Query psy6067
Match_columns 584
No_of_seqs 189 out of 2130
Neff 8.2
Searched_HMMs 13730
Date Fri Aug 16 16:47:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6067.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6067hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2a65a1 f.54.1.1 (A:5-513) Na( 97.2 0.18 1.3E-05 51.8 31.4 39 38-76 7-45 (509)
2 d1fftb2 f.17.2.1 (B:27-117) Cy 14.3 56 0.004 23.9 3.0 19 561-579 31-49 (91)
3 d2h8pc1 f.14.1.1 (C:22-78) Pot 6.1 3.4E+02 0.025 17.5 4.3 27 269-295 25-53 (57)
4 d1nekd_ f.21.2.2 (D:) Succinat 5.9 4.4E+02 0.032 19.2 5.6 50 248-298 53-102 (113)
5 d1sfua_ a.4.5.19 (A:) 34L {Yab 3.8 1.6E+02 0.011 20.3 1.1 13 356-368 42-54 (70)
6 d2e74g1 f.23.26.1 (G:9-35) Pet 3.8 3.5E+02 0.025 14.3 2.6 18 558-575 5-22 (27)
7 d3dtub2 f.17.2.1 (B:30-129) Ba 3.2 7.5E+02 0.055 17.3 7.8 10 422-431 49-58 (100)
8 d2qqra1 b.34.9.1 (A:897-955) J 3.0 72 0.0052 21.2 -1.3 33 443-475 21-53 (59)
9 d2uuia1 f.56.1.1 (A:2-147) Leu 2.9 9.2E+02 0.067 18.3 5.4 25 408-432 9-33 (146)
10 d1iwga7 f.35.1.1 (A:7-37,A:331 2.5 1.2E+03 0.088 18.1 8.7 18 524-541 61-78 (199)
No 1
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=97.17 E-value=0.18 Score=51.82 Aligned_cols=39 Identities=26% Similarity=0.409 Sum_probs=30.1
Q ss_pred HHHHHHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHH
Q psy6067 38 LTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFII 76 (584)
Q Consensus 38 ~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll 76 (584)
..+.+.-++|..+|.|-+.+.+.....++|...++.+++
T Consensus 7 ~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~ 45 (509)
T d2a65a1 7 RLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYII 45 (509)
T ss_dssp HHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHH
Confidence 466777789999999999998888878878665555544
No 2
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=14.26 E-value=56 Score=23.87 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=13.6
Q ss_pred HHHHHHHHhhhcccccccc
Q psy6067 561 LVIGFGIYFTYGISHSKQK 579 (584)
Q Consensus 561 ~~~~~~~y~~~~~~~~~~~ 579 (584)
.+.+.++|+.+++|+++++
T Consensus 31 ~V~~~~~~~~~ryR~~~~~ 49 (91)
T d1fftb2 31 PAILMAVGFAWKYRASNKD 49 (91)
T ss_dssp HHHHHHHTTTTTTTTSTTT
T ss_pred HHHHHHHhhheeeeccCCc
Confidence 4677788888887776654
No 3
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=6.15 E-value=3.4e+02 Score=17.53 Aligned_cols=27 Identities=11% Similarity=0.022 Sum_probs=17.7
Q ss_pred hhcccccccCc--CCCchhHHHHHHHHHH
Q psy6067 269 IATTGEESKNP--KRDIPLSILLSLFIVF 295 (584)
Q Consensus 269 ~~~~~~E~knP--~k~ip~ai~~~i~i~~ 295 (584)
.....|+-.+| -+++|.++.++++..+
T Consensus 25 ~~y~~E~~~~~~~f~sip~a~WWaivT~T 53 (57)
T d2h8pc1 25 LAVLAERGAPGAQLITYPRALWWACETAT 53 (57)
T ss_dssp HHHHHHTTSTTCCCCSHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCccccccchhhhhheeeee
Confidence 44445544333 3689999999988654
No 4
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=5.85 E-value=4.4e+02 Score=19.18 Aligned_cols=50 Identities=12% Similarity=0.125 Sum_probs=26.6
Q ss_pred chHHHHHHHHHHHHhhhhhhhhhcccccccCcCCCchhHHHHHHHHHHHHH
Q psy6067 248 GLNGIIVGAAKCFFGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCY 298 (584)
Q Consensus 248 g~~~~~~~i~~~~~af~G~e~~~~~~~E~knP~k~ip~ai~~~i~i~~viy 298 (584)
.+...+..+......|=++...-.+.||--+|+ ...+..........+.+
T Consensus 53 ~~~~il~~l~l~~~~~H~~lGl~~IieDYi~~~-~~r~~~~~~~~~~~~~~ 102 (113)
T d1nekd_ 53 AFTKVFTLLALFSILIHAWIGMWQVLTDYVKPL-ALRLMLQLVIVVALVVY 102 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSH-HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHhhhHHHhcCCh-hHHHHHHHHHHHHHHHH
Confidence 344555555555555556666667777777653 34444444444333333
No 5
>d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]}
Probab=3.80 E-value=1.6e+02 Score=20.34 Aligned_cols=13 Identities=15% Similarity=0.368 Sum_probs=10.4
Q ss_pred HHHHHHHHhcCcc
Q psy6067 356 PRILYAMSLDGLL 368 (584)
Q Consensus 356 sR~l~a~A~dg~l 368 (584)
-|.||.|-++|.+
T Consensus 42 Nr~LY~L~~~G~v 54 (70)
T d1sfua_ 42 NQQLYKLQKEDTV 54 (70)
T ss_dssp HHHHHHHHHTTSE
T ss_pred HHHHHHHHHCCCe
Confidence 5788999888775
No 6
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.78 E-value=3.5e+02 Score=14.31 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHhhhcccc
Q psy6067 558 VIWLVIGFGIYFTYGISH 575 (584)
Q Consensus 558 ~~~~~~~~~~y~~~~~~~ 575 (584)
.+..-++-++|..|...+
T Consensus 5 li~~tl~glf~aayqqyk 22 (27)
T d2e74g1 5 LVFATLGGLFYAAYQQYK 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred ehHHHHHHHHHHHHHHhc
Confidence 334445666777776543
No 7
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.21 E-value=7.5e+02 Score=17.25 Aligned_cols=10 Identities=10% Similarity=0.062 Sum_probs=4.4
Q ss_pred HHHHHHhhcc
Q psy6067 422 LSVLILRYSE 431 (584)
Q Consensus 422 la~i~~r~~~ 431 (584)
...++.|+++
T Consensus 49 ~~~~~~r~~~ 58 (100)
T d3dtub2 49 YAVWRFHEKR 58 (100)
T ss_dssp HHHHHHBTTT
T ss_pred HHhhhhhccC
Confidence 3344555443
No 8
>d2qqra1 b.34.9.1 (A:897-955) Jumonji domain-containing protein 2A {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.03 E-value=72 Score=21.24 Aligned_cols=33 Identities=24% Similarity=0.468 Sum_probs=22.9
Q ss_pred ccccccccccchhhhhcccccccCCCCCCcCCC
Q psy6067 443 CAEKETKSSSFAEKDINAKNFSVNALPEETLDP 475 (584)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (584)
|--...+.-.+.+.-+.--+|+.|+.|||-+.-
T Consensus 21 c~V~~~~~qtfyeV~FdDgS~sdnl~PEdIvs~ 53 (59)
T d2qqra1 21 CEVVRLTTETFYEVNFDDGSFSDNLYPEDIVSQ 53 (59)
T ss_dssp EEEEEEEEEEEEEEEETTSCEEEEECGGGBCSS
T ss_pred EEEEEeeeEEEEEEEecCCCcccCcCchhcccc
Confidence 444555555666666666788889999987654
No 9
>d2uuia1 f.56.1.1 (A:2-147) Leukotriene C4 synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.86 E-value=9.2e+02 Score=18.27 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccC
Q psy6067 408 MLSIGTLLAYTIVALSVLILRYSED 432 (584)
Q Consensus 408 ~~s~~~l~~y~l~~la~i~~r~~~~ 432 (584)
+.+....+.+.....-+.+.|+|++
T Consensus 9 ~vt~l~~i~~~~~s~~V~~~R~k~k 33 (146)
T d2uuia1 9 AVTLLGVLLQAYFSLQVISARRAFR 33 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3334444555555556777777654
No 10
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=2.47 E-value=1.2e+03 Score=18.13 Aligned_cols=18 Identities=11% Similarity=0.479 Sum_probs=8.7
Q ss_pred CcccccccchhHHHHHHH
Q psy6067 524 LKFKVPWVPLVPCLSIFM 541 (584)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~ 541 (584)
|.+|.+..+..++...+.
T Consensus 61 rs~~~~li~~~~i~~~i~ 78 (199)
T d1iwga7 61 QNFRATLIPTIAVPVVLL 78 (199)
T ss_dssp CCTTTTTHHHHHHHHHHH
T ss_pred hhhhhhheeccccchhhH
Confidence 346666554444443333
Done!