RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6067
(584 letters)
>gnl|CDD|129984 TIGR00906, 2A0303, cationic amino acid transport permease.
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 557
Score = 460 bits (1186), Expect = e-157
Identities = 242/588 (41%), Positives = 353/588 (60%), Gaps = 41/588 (6%)
Query: 1 MWLSNFLDALSRKKSSYSEDAYDDGSGSREKLARVLGLTDLTLLGIGATLGVGVYVLAGS 60
+ F L R+K D S K+ R L DL LGIG+T+G G+YVL G
Sbjct: 1 RAVLTFARCLIRRKI------VDLDSREESKMKRCLTTWDLMALGIGSTIGAGIYVLTGE 54
Query: 61 VAKNQAGPSVVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLSIGEFAAYIIGWN 120
VA+N +GP++V+SF+I+ LA+ LSG CY EF +R+ K+GSAY Y+Y+++GE A+I GWN
Sbjct: 55 VARNDSGPAIVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVTVGELWAFITGWN 114
Query: 121 LELFIEVQAFCIEFSRI-REAAALFRLLKQLESGGGETSTLTTDR--YSFLSTYPDFIAA 177
L L + I + + R +A F +L + T + Y L+ YPDF A
Sbjct: 115 LIL-----EYVIGTAAVARSWSAYF---DELLNKQIGQFRRTYFKLNYDGLAEYPDFFAV 166
Query: 178 GIVMLMSALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVR 237
+++L++ L+S+GV ES +N +FT +N+ ++ ++ +G K + NW+I +E
Sbjct: 167 CLILLLAVLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEK------ 220
Query: 238 HGGTGGFAPFGLNGIIVGAAKCFFGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVC 297
G GGF P+G G++ GAA CFF F+GFD IATTGEE KNP+R IP+ I+ SL + FV
Sbjct: 221 --GAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQRAIPIGIVTSLLVCFVA 278
Query: 298 YLAIAIVLTLIIPYYEQDAEAPFPHIFDSLGWPVMKWLVTVGSLFALLTAMFGALFPLPR 357
Y ++ LTL++PYY D +APFP F+ +GW K++V VG+L + T++ G +FPLPR
Sbjct: 279 YFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPR 338
Query: 358 ILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVFKLDQLVDMLSIGTLLAY 417
++YAM+ DGLL+ + ++ +TKTP+ +++++GA+ A+++ +F L LVD+LSIGTLLAY
Sbjct: 339 VIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALVDLLSIGTLLAY 398
Query: 418 TIVALSVLILRYS-----EDGADTPIKGT--SCAEKETKSSSFAEKDINAKNFSVNALPE 470
++VA VLILRY DT K T S +KS S +E FS+ L
Sbjct: 399 SLVAACVLILRYQPGLVYGQAKDTDEKDTLDSWVPFTSKSESQSEG------FSLRTLFS 452
Query: 471 ETLDPNSQSALTGGPVPTSDCTSALQYATFTLLGLVYTVVFVCLARQNQNRARLKFKVPW 530
+ S G + S F +L L +V + + RQ QN+ ++ FKVP
Sbjct: 453 GLILGLSILTTYGRAAIAEEAWSIALLTLFLVLFL---LVVLTIWRQPQNKQKVAFKVPL 509
Query: 531 VPLVPCLSIFMNIYLMINLDISTWVRFVIWLVIGFGIYFTYGISHSKQ 578
VP +P LSI +NI+LM+ LD TWVRF IW+ IGF IYF YGI HS +
Sbjct: 510 VPFLPALSILINIFLMVQLDADTWVRFAIWMAIGFLIYFLYGIRHSLE 557
>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter. [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 429
Score = 231 bits (591), Expect = 5e-70
Identities = 130/403 (32%), Positives = 216/403 (53%), Gaps = 35/403 (8%)
Query: 32 LARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEF 91
L+R LGL DLT+LGIGA +G G++V+ G A +AGP+V++SF++A L + L Y E
Sbjct: 1 LSRELGLFDLTMLGIGAMIGTGIFVVTGIAA-GKAGPAVILSFVLAGLTALFIALVYAEL 59
Query: 92 ASRISKSGSAYNYTYLSIGEFAAYIIGWNL--ELFIEVQAFCIEFSRIREAAALFRLLKQ 149
A+ + +GS Y Y Y ++GE A+IIGW+L E + V A + + L++
Sbjct: 60 AAMLPVAGSPYTYAYEAMGELTAFIIGWSLWLEYGVAVAAVAVGWGG---------YLQE 110
Query: 150 LESGGGET--STLTT-DRYSFLSTYPDFIAAGIVMLMSALISWGVSESTRLNSVFTFLNL 206
G G + LT + P + IV+ ++ ++ G ES ++N + L +
Sbjct: 111 FLPGVGLDLPAVLTAKPGNGGVFNLPALL---IVLFLTYILYLGAKESGKVNDILVVLKV 167
Query: 207 GTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGF 266
+++ G N+ F P G G+ A FF F+GF
Sbjct: 168 AALLLFAALGAIHFASNNYT----------------PFMPMGFGGVGAATALVFFAFIGF 211
Query: 267 DCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYE-QDAEAPFPHIFD 325
+ I+T EE KNP+RDIP +I+LSL +V + Y+ +A V+ +P+ + + AP +
Sbjct: 212 EAISTAAEEVKNPERDIPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGY 271
Query: 326 SLGWPVMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLS 385
LG + ++T G++F++ + M ++ R+L+AMS DGLL S V P+T TP +S
Sbjct: 272 DLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLPGSLSKVHPKTGTPHMS 331
Query: 386 SLLTGALTAVLSAVFKLDQLVDMLSIGTLLAYTIVALSVLILR 428
++ A+L+++ L+ L ++ SIGTL+A+ V ++V+ILR
Sbjct: 332 IIIFSLTAALLASLVPLEGLAELTSIGTLIAFAAVNVAVIILR 374
Score = 53.6 bits (129), Expect = 1e-07
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 479 SALTGGPVPTSDCTSALQYATFTLLGLVYTVVFVCLARQNQNRARLKFKVPWVPLVPCLS 538
+AL VP T L+ V V + R+ + + F+ P VP++P L
Sbjct: 339 AALLASLVPLEGLAELTSIGT--LIAFAAVNVAVIILRRRRPDIQRAFRCPLVPVLPVLV 396
Query: 539 IFMNIYLMINLDISTWVRFVIWLVIGFGIYFTY 571
+ IYL++NL T V F++W+++G YF Y
Sbjct: 397 VSYCIYLLLNLGPGTTVWFLVWMLLGSVFYFIY 429
>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and
metabolism].
Length = 466
Score = 173 bits (440), Expect = 7e-48
Identities = 120/423 (28%), Positives = 199/423 (47%), Gaps = 37/423 (8%)
Query: 26 SGSREKLARVLGL-TDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALS 84
S +L + LGL LT LG+G+ +G G++ L GS A P+ +++++IA +
Sbjct: 4 SMMSSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAA--GLAPAAILAWLIAGIIILFL 61
Query: 85 GLCYVEFASRISKSGSAYNYTYLSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALF 144
L Y E +S I +G AY Y ++G ++ GW + + A
Sbjct: 62 ALSYAELSSAIPSAGGAYAYAKRALGPRLGFLAGW-------LYLLAYVIALAAIAIGAA 114
Query: 145 RLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWGVSESTRLNSVFTFL 204
L L G G S IA ++ L++ L G+ S ++NS+ T L
Sbjct: 115 SYLSYLFPGPGLLSIG--------PLLIILIALALIALLTLLNLRGIKASAKINSIITIL 166
Query: 205 NLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFV 264
+ +++ + GLF N + GI+ FF F
Sbjct: 167 KIIILLIFIILGLFAFGFSNGNLF-----------APFNPGGGSFGGILAAILLAFFAFT 215
Query: 265 GFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDA---EAPFP 321
GF+ IAT EE KNPKR IP +I+LSL IV + Y+ A+V+ ++P + A AP
Sbjct: 216 GFEAIATLAEEVKNPKRTIPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLA 275
Query: 322 HIFDSLGWPVMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKT 381
G ++ + +L +L ++ + + R+LYAM+ DGLL F+ V+P+ +T
Sbjct: 276 LAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVLYAMARDGLLPKFFAKVNPKGRT 335
Query: 382 PVLSSLLTGALTAVLSAVFKL-----DQLVDMLSIGTLLAYTIVALSVLILRYSEDGADT 436
PV++ +LTG ++ +L +F L + LV + S+ L+AY +VAL++L+LR +
Sbjct: 336 PVIALILTGIISLILLLLFPLSSIAFNALVSLASVAFLIAYLLVALALLVLRRKKPDLKR 395
Query: 437 PIK 439
P +
Sbjct: 396 PFR 398
>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease.
Length = 425
Score = 122 bits (307), Expect = 6e-30
Identities = 95/416 (22%), Positives = 175/416 (42%), Gaps = 43/416 (10%)
Query: 36 LGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSG-LCYVEFASR 94
L L L IG+ +G G++V + AG + ++ IAAL +L+ L Y E +S
Sbjct: 1 LSLLSAFALVIGSIIGSGIFVTPLIAS---AGAAAILWGWIAALIFSLAVALVYAELSSA 57
Query: 95 ISKSGSAYNYTYLSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGG 154
++G Y + + G+ A+I W L + + + F
Sbjct: 58 FPRNGGIYVWLKNAFGKPVAFIAAWFNWLAYILGLASSSSVAAQYLLSAF---------F 108
Query: 155 GETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWGVSESTRLNSV-FTFLNLGTVVVIV 213
+ T Y IA I+++ + + G+ ES ++ ++ L +++I+
Sbjct: 109 PDLVGNTWLTY--------GIAIAILIIFALINIRGIKESAKIQNILGIVKLLLPLILII 160
Query: 214 GSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGFDCIATTG 273
GL + F P G G+ +G + F GF+ A
Sbjct: 161 LLGLVLALGG---------GFNLLPNSWTTFFPSGWPGVFLGLLIVLWSFGGFESAANVS 211
Query: 274 EESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYE----QDAEAPFPHIFDSLGW 329
EE KRD+P ++ + L IV V YL + I+ ++P E + + +F+++G
Sbjct: 212 EE--VKKRDVPKALFIGLLIVGVLYLLVNILFLGVVPDDEIAKLSNLPSVAALLFEAVGG 269
Query: 330 PVMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLT 389
P +V + +LL A+ A+ R+L A++ DG+L F+ V+ +PV + +LT
Sbjct: 270 PWGAIIVVILLALSLLGAVNTAIVASSRVLEALARDGVLPKFFAKVNKF-GSPVRALILT 328
Query: 390 GALTAVLSAVF-----KLDQLVDMLSIGTLLAYTIVALSVLILRYSEDGADTPIKG 440
L+ +L +F + L+ + ++G LL Y ++ + +LILR
Sbjct: 329 AILSLILLLLFLLSGAAYNALLSLSAVGYLLVYLLLIIGLLILRKKRPDLPRIKGR 384
>gnl|CDD|215858 pfam00324, AA_permease, Amino acid permease.
Length = 473
Score = 115 bits (289), Expect = 2e-27
Identities = 82/402 (20%), Positives = 159/402 (39%), Gaps = 30/402 (7%)
Query: 40 DLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRISKSG 99
+ ++ +G +G G++V +GSV ++ ++IA + L+ L E ++ +G
Sbjct: 1 HVLMIALGGVIGTGLFVGSGSVLGQAGPAGALLGYLIAGVVIFLTMLSLGEMSTNGPVAG 60
Query: 100 SAYNYTYLSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETST 159
Y Y +G + GWN L A L ++
Sbjct: 61 GFYAYASRFLGPSLGFATGWNYWLSWIFVI----------ALELTAASILIQFWELVPDI 110
Query: 160 LTTDRYSFLSTYPDFIAAGIVMLMSALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFK 219
+ + FI +++ + + +G +E + +G ++V L
Sbjct: 111 PYLWVWGAV-----FIVLLLIINLVGVKGYGEAE-FWFALIKVIAIIGFIIVGFIIPLSG 164
Query: 220 MNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGFDCIATTGEESKNP 279
P + A + + G FF F G + + E KNP
Sbjct: 165 GGPNDGAYLGYNGGKNNFPPGFASPGTGSFANFFSVFVIAFFAFTGIELVGNAAGEVKNP 224
Query: 280 KRDIPLSILLSLFIVFVCYLAIAIVLTLIIPY-------YEQDAEAPFPHIFDSLGWPVM 332
++ IP +IL +++ + + Y+ + + L++P+ A +PF F SLG +
Sbjct: 225 RKAIPKAILQAVWRITIFYILSLLAIGLLVPWNDPGLLADSASAASPFVIFFKSLGISGL 284
Query: 333 KWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGAL 392
L+ L A L+A +L+ R+LYA++ DGL V ++ P+ + LL+ A+
Sbjct: 285 APLINAVILTAALSAANSSLYSGSRVLYALARDGLAPKFLKKVD-KSGVPLRAILLSTAI 343
Query: 393 T--AVLSAVFKLDQLVDMLS----IGTLLAYTIVALSVLILR 428
+ AVL A + + L + L+ + +++LS L R
Sbjct: 344 SLLAVLLASLNPAIVFNFLLAISGLIGLIVWGLISLSHLRFR 385
>gnl|CDD|183096 PRK11357, frlA, putative fructoselysine transporter; Provisional.
Length = 445
Score = 106 bits (267), Expect = 9e-25
Identities = 103/417 (24%), Positives = 178/417 (42%), Gaps = 54/417 (12%)
Query: 30 EKLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSV-VISFIIAALASALSGLCY 88
++L R LG + + +G T+G G++V G VAK P + V++F+I L Y
Sbjct: 4 QELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVY 63
Query: 89 VEFASRISKSGSAYNYTYLSIGEFAAYIIGW-----NLELFIEVQAFCIEFSRIREAAAL 143
E ++ ++G+ Y Y + A++ GW N + + A I +
Sbjct: 64 AELSTAYPENGADYVYLKNAGSRPLAFLSGWASFWANDAPSLSIMALAI--------VSN 115
Query: 144 FRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWGVSESTRLNSVFTF 203
L ++ G+ FIAAG+++ L V ++ T
Sbjct: 116 LGFLTPIDPLLGK-----------------FIAAGLIIAFMLLHLRSVEGGAAFQTLITI 158
Query: 204 LNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGF 263
+ +++G G+F N+A P T G TG F ++ G + + +
Sbjct: 159 AKIIPFTIVIGLGIFWFKAENFAA-----PTTTAIGATGSFM-----ALLAGISATSWSY 208
Query: 264 VGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDA-EAPFPH 322
G I E KNP + +P +++ S +V V Y +A+V++ ++P+ + E P
Sbjct: 209 TGMASICYMTGEIKNPGKTMPRALIGSCLLVLVLYTLLALVISGLMPFDKLANSETP--- 265
Query: 323 IFDSLGWPVMKWLVTVGSLFALLTAMFGALFPL-------PRILYAMSLDGLLYDCFSYV 375
I D+L W + L + +F +TAM L L PR+ YAM+ D L + CF +V
Sbjct: 266 ISDALTW--IPALGSTAGIFVAITAMIVILGSLSSCVMYQPRLEYAMAKDNLFFKCFGHV 323
Query: 376 SPRTKTPVLSSLLTGALTAVLSAVFKLDQLVDMLSIGTLLAYTIVALSVLILRYSED 432
P+ TP +S +L GAL V L L+ ++ T+ S++ R +D
Sbjct: 324 HPKYNTPDVSIILQGALGIFFIFVSDLTSLLGYFTLVMCFKNTLTFGSIIWCRKRDD 380
>gnl|CDD|206077 pfam13906, AA_permease_C, C-terminus of AA_permease. This is the
C-terminus of AA-permease enzymes that is not captured
by the models pfam00324 and pfam13520.
Length = 51
Score = 90.4 bits (225), Expect = 1e-22
Identities = 33/51 (64%), Positives = 39/51 (76%)
Query: 526 FKVPWVPLVPCLSIFMNIYLMINLDISTWVRFVIWLVIGFGIYFTYGISHS 576
FKVP VP +P LSI +NIYLM+ LD TW+RF +WL+IG IYF YGI HS
Sbjct: 1 FKVPLVPFLPALSILINIYLMVQLDALTWIRFAVWLLIGLLIYFGYGIRHS 51
>gnl|CDD|233179 TIGR00911, 2A0308, L-type amino acid transporter. [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 501
Score = 92.9 bits (231), Expect = 6e-20
Identities = 90/418 (21%), Positives = 162/418 (38%), Gaps = 43/418 (10%)
Query: 32 LARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSV-VISFIIAALASALSGLCYVE 90
L + + L + +G +G G++V V KN + +I + + + S + L Y E
Sbjct: 40 LKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAE 99
Query: 91 FASRISKSGSAYNYTYLSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQL 150
+ I KSG YNY G A++ W IE IR +
Sbjct: 100 LGTTIPKSGGEYNYILEVFGPLLAFLRLW------------IELLVIRPGSQ-------- 139
Query: 151 ESGGGETSTLTTDRYSFLSTYPD---------FIAAGIVMLMSALISWGVSESTRLNSVF 201
+ L Y +PD +A V+L++ + V +TR+ +F
Sbjct: 140 -----AVNALNFAIYILTPVFPDCEVPEWAIRLVAVLCVLLLTLVNCLSVKWATRVQDIF 194
Query: 202 TFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFF 261
T L +++I+ +G + K + G GI++ +
Sbjct: 195 TACKLLALLLIIITGWV-------QLGKGGVESLNPKNAFEGTET-SAGGIVLAFYSGIW 246
Query: 262 GFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDAEAPFP 321
+ G++ + EE KNP R +P++I++S+ IV Y+ I ++ E A
Sbjct: 247 AYGGWNYLNFVTEEVKNPYRTLPIAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAVA 306
Query: 322 HIFDSLGWPVMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKT 381
F VM W + + ++ G+LF R+ + +G L S + + T
Sbjct: 307 VDFGERLLGVMSWAMPALVGLSCFGSVNGSLFSSSRLFFVGGREGHLPSLLSMIHVKRLT 366
Query: 382 PVLSSLLTGALTAVLSAVFKLDQLVDMLSIGTLLAYTIVALSVLILRYSEDGADTPIK 439
P+ S L+ LT ++ + L++++S L + +L LRY + PIK
Sbjct: 367 PLPSLLIVCTLTLLMLFSGDIYSLINLISFANWLFNALAVAGLLWLRYKRPEMNRPIK 424
>gnl|CDD|224038 COG1113, AnsP, Gamma-aminobutyrate permease and related permeases
[Amino acid transport and metabolism].
Length = 462
Score = 89.6 bits (223), Expect = 5e-19
Identities = 99/429 (23%), Positives = 176/429 (41%), Gaps = 44/429 (10%)
Query: 23 DDGSGSREKLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASA 82
+D + L R L + L+ IG +G G+++ +GS AGPSV+++++IA +
Sbjct: 2 EDQKNEEQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIA-MAGPSVLLAYLIAGIFVF 60
Query: 83 LSGLCYVEFASRISKSGSAYNYTYLSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAA 142
L E SGS +Y +G +A ++ GW F I E A
Sbjct: 61 LIMRALGEMLVANPVSGSFSDYARKYLGPWAGFLTGWT-------YWFFWVLVGIAELTA 113
Query: 143 LFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWGVSESTRLNSVFT 202
+ L+ + F A V+L+ A+ V L F
Sbjct: 114 IGIYLQ----------------FWFPDVPQWVFALAAVVLLLAVNLISVKVFGELEFWFA 157
Query: 203 FLNLGTVV--VIVGSG-LFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKC 259
+ + ++ ++VG LF HGG F P G G +
Sbjct: 158 LIKVAAIIAFIVVGIVLLFGGFGGGGGA--AGFSNLWDHGG---FFPNGFLGFLSALQIV 212
Query: 260 FFGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYE-QDAEA 318
F F G + + T E+K+P++ IP +I ++ + + Y+ V+ + P+ + + +
Sbjct: 213 MFAFGGIELVGITAAEAKDPEKAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGS 272
Query: 319 PFPHIFDSLGWPVMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPR 378
PF +F +G P ++ L A L+A+ L+ R+LY+++ G F+ +S +
Sbjct: 273 PFVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGDAPKAFAKLS-K 331
Query: 379 TKTPVLSSLLTGA---LTAVLSA-----VFKLDQLVDMLSIGTLLAYTIVALSVLILRYS 430
PV + LL+ L VL+ VF+L + +G L + ++ LS L LR +
Sbjct: 332 RGVPVNAILLSAVVLLLGVVLNYILPEKVFEL--VTSSSGLGLLFVWLMILLSQLKLRKA 389
Query: 431 EDGADTPIK 439
+ +K
Sbjct: 390 KPAEGKKLK 398
>gnl|CDD|236667 PRK10249, PRK10249, phenylalanine transporter; Provisional.
Length = 458
Score = 84.3 bits (208), Expect = 3e-17
Identities = 97/407 (23%), Positives = 178/407 (43%), Gaps = 35/407 (8%)
Query: 18 SEDAYDDGSGSREKLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIA 77
S + D S L R L + L+ +G +G G+++ G A AGP+V++ + +A
Sbjct: 5 STVSEDTASNQEPTLHRGLHNRHIQLIALGGAIGTGLFLGIGP-AIQMAGPAVLLGYGVA 63
Query: 78 ALASALSGLCYVEFASRISKSGSAYNYTYLSIGEFAAYIIGWNLELFIEVQAFCIEFSRI 137
+ + L E SGS ++ Y G FA ++ GWN +
Sbjct: 64 GIIAFLIMRQLGEMVVEEPVSGSFAHFAYKYWGPFAGFLSGWNYWV-------------- 109
Query: 138 REAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFI-AAGIVMLMSALISWGVSESTR 196
+F L+ G E + + P +I AA ++++A+ V
Sbjct: 110 -----MFVLV-----GMAELTAAGIYMQYWFPDVPTWIWAAAFFIIINAVNLVNVRLYGE 159
Query: 197 LNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGA 256
F + + ++ ++G GL+ + + K I R+GG F G NG+I+
Sbjct: 160 TEFWFALIKVLAIIGMIGFGLWLLFSGHGG-EKASIDNLWRYGG---FFATGWNGLILSL 215
Query: 257 AKCFFGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYE-QD 315
A F F G + I T E+++P++ IP ++ ++ + + Y+ +VL + P+ E +
Sbjct: 216 AVIMFSFGGLELIGITAAEARDPEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKS 275
Query: 316 AEAPFPHIFDSLGWPVMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYV 375
+PF IF +L V+ + L A L+ ++ R+L+ +S+ G + V
Sbjct: 276 NSSPFVMIFHNLDSNVVASALNFVILVASLSVYNSGVYSNSRMLFGLSVQGNAPKFLTRV 335
Query: 376 SPRTKTPVLSSLLTGALTAVLSAVFKLDQLVDMLSIGTLLAYTIVAL 422
S R P+ S +L+GA+T S V ++ L+ + G L+A + L
Sbjct: 336 S-RRGVPINSLMLSGAIT---SLVVLINYLLPQKAFGLLMALVVATL 378
>gnl|CDD|223903 COG0833, LysP, Amino acid transporters [Amino acid transport and
metabolism].
Length = 541
Score = 74.6 bits (184), Expect = 5e-14
Identities = 50/203 (24%), Positives = 90/203 (44%), Gaps = 17/203 (8%)
Query: 242 GGFAPFGLNGIIVGAAKCFFGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAI 301
G FA G G F F G + + ES+NP++ IP +I + + + Y+
Sbjct: 227 GAFAG-GFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPKAIKQVFWRILLFYILS 285
Query: 302 AIVLTLIIPYYEQD---------AEAPFPHIFDSLGWPVMKWLVTVGSLFALLTAMFGAL 352
V+ L++PY + A +PF + G PV ++ L ++L+A L
Sbjct: 286 IFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGL 345
Query: 353 FPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTG--ALTAVLSAVFKLDQLVDML- 409
+ R+LY+++ G F+ V R P+++ L+T L A L++ FK + + L
Sbjct: 346 YASSRMLYSLAKQGKAPKIFAKVD-RRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLL 404
Query: 410 ---SIGTLLAYTIVALSVLILRY 429
+ +A+ + LS + R
Sbjct: 405 NISGLSGFIAWGSICLSHIRFRR 427
Score = 42.2 bits (100), Expect = 6e-04
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 4/118 (3%)
Query: 6 FLDALSRKKSSYSEDAYDDGS--GSREKLARVLGLTDLTLLGIGATLGVGVYVLAGSVAK 63
F+D+ R + + DD +L R L L ++ IG +G G++V +G A
Sbjct: 14 FIDSFKRDEHDMDSELEDDEDETQQGGELKRSLKSRHLQMIAIGGAIGTGLFVGSGK-AL 72
Query: 64 NQAGP-SVVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLSIGEFAAYIIGWN 120
+QAGP ++I+++I + E A SGS Y + + +GWN
Sbjct: 73 SQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFVDPAFGFALGWN 130
Score = 31.4 bits (72), Expect = 1.3
Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 10/77 (12%)
Query: 517 QNQNRARLKFKVPWVPLVPCLSIFMNIYLMINLDIS-------TWVRFV---IWLVIGFG 566
Q ++ L +K P+ P P + + I ++I + F + L I
Sbjct: 432 QGRSLDELPYKSPFGPYGPIYGLILCILILIGQGYVAFFPIGFSAGDFFAAYLGLPIFIA 491
Query: 567 IYFTYGISHSKQKLTKL 583
IY Y + K +L
Sbjct: 492 IYIGYKLYKKTTKFVRL 508
>gnl|CDD|182324 PRK10238, PRK10238, aromatic amino acid transporter; Provisional.
Length = 456
Score = 69.6 bits (170), Expect = 2e-12
Identities = 93/406 (22%), Positives = 172/406 (42%), Gaps = 41/406 (10%)
Query: 24 DGSGSREKLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASAL 83
+G E+L R L + L+ +G +G G+++ + SV ++ AGP +++ + IA + L
Sbjct: 2 EGQQHGEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQS-AGPGIILGYAIAGFIAFL 60
Query: 84 SGLCYVEFASRISKSGSAYNYTYLSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAAL 143
E +GS ++ Y G FA + GWN + + A A L
Sbjct: 61 IMRQLGEMVVEEPVAGSFSHFAYKYWGSFAGFASGWNYWVLYVLVAM----------AEL 110
Query: 144 FRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWGVSESTRLNSVFTF 203
+ K ++ E T + AA ++++A+ V + F
Sbjct: 111 TAVGKYIQFWYPEIPTWVS-------------AAVFFVVINAINLTNVKVFGEMEFWFAI 157
Query: 204 LNLGTVVVIVGSG---LFKMNPRNWAIRKEDIPRTVRH-GGTGGFAPFGLNGIIVGAAKC 259
+ + VV ++ G LF N A TV + GGF P G G+++ A
Sbjct: 158 IKVIAVVAMIIFGGWLLFSGNGGPQA--------TVSNLWDQGGFLPHGFTGLVMMMAII 209
Query: 260 FFGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDAE-A 318
F F G + + T E+ NP++ IP + ++ + + Y+ VL ++P+ A+ +
Sbjct: 210 MFSFGGLELVGITAAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTS 269
Query: 319 PFPHIFDSLGWPVMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPR 378
PF IF LG + + + L A L+ ++ R+L+ ++ G + V R
Sbjct: 270 PFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALASVDKR 329
Query: 379 TKTPVLSSLLTGALTAVLSAVFKLDQLVDMLSIGTLLAYTIVALSV 424
PV + L++ +TA+ ++ L + G L+A + AL +
Sbjct: 330 -GVPVNTILVSALVTAL---CVLINYLAPESAFGLLMALVVSALVI 371
>gnl|CDD|236904 PRK11387, PRK11387, S-methylmethionine transporter; Provisional.
Length = 471
Score = 68.0 bits (166), Expect = 5e-12
Identities = 91/409 (22%), Positives = 172/409 (42%), Gaps = 42/409 (10%)
Query: 26 SGSREKLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSG 85
S + R + + L +L +G +G G++ G + +++++I AL L
Sbjct: 6 SQQAGQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVM 65
Query: 86 LCYVEFASRISKSGSAYNYTYLSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFR 145
C E + + ++G+ + Y +G Y + W L+
Sbjct: 66 QCLGELSVAMPETGAFHVYAARYLGPATGYTVAW-----------------------LYW 102
Query: 146 LLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWGVSESTRLNSV----F 201
L + G S+LT + +P +L ALI STR + F
Sbjct: 103 LTWTVALG----SSLTAAGFCMQYWFPQVPVWPWCLLFCALIFGLNVVSTRFFAEGEFWF 158
Query: 202 TFLNLGTVVVIV---GSGLFKMNPRNWAIRKEDIPRT-VRHGGTGGFAPFGLNGIIVGAA 257
+ + + T++ + G+ +F P ++ P +R+ G+ P G I++
Sbjct: 159 SLIKVVTILAFIVLGGAAIFGFIPM-----QDGSPAPGLRNLTAEGWFPHGGLPILMTMV 213
Query: 258 KCFFGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDAE 317
F F G + I E++NP + IP++I ++ + + ++ +VL +IP + E
Sbjct: 214 AVNFAFSGTELIGIAAGETENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVE 273
Query: 318 -APFPHIFDSLGWPVMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVS 376
+PF +F+ +G P + L A+L+A L+ R+L+++S +G L CF+ ++
Sbjct: 274 KSPFVLVFEKVGIPYAADIFNFVILTAILSAANSGLYASGRMLWSLSNEGTLPACFARLT 333
Query: 377 PR-TKTPVLSSLLTGALTAVLSAVFKLDQLVDMLSIGTLLAYTIVALSV 424
R LS + G L A+ S+V D + LS + A V LS+
Sbjct: 334 KRGIPLTALSVSMLGGLLALFSSVVAPDTVFVALSAISGFAVVAVWLSI 382
Score = 31.0 bits (70), Expect = 2.0
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 516 RQNQNRARLKFKVPWVPLVPCLSIFMNIYLMINLDISTWVRFVIWLVIGFGIYFTYGISH 575
R + + L ++ PW PL P L + + + L R +W I F + YG +
Sbjct: 395 RDGKALSELAYRAPWYPLTPILGFVLCLLACVGLAFDPSQRIALWCGIPF-VALCYGAYY 453
Query: 576 SKQKLTK 582
Q+L +
Sbjct: 454 LTQRLKR 460
>gnl|CDD|129986 TIGR00908, 2A0305, ethanolamine permease. The three genes used as
the seed for this model (from Burkholderia pseudomallei,
Pseudomonas aeruginosa and Clostridium acetobutylicum
are all adjacent to genes for the catabolism of
ethanolamine. Most if not all of the hits to this model
have a similar arrangement of genes. This group is a
member of the Amino Acid-Polyamine-Organocation (APC)
Superfamily [Transport and binding proteins, Amino
acids, peptides and amines].
Length = 442
Score = 64.1 bits (156), Expect = 8e-11
Identities = 88/411 (21%), Positives = 159/411 (38%), Gaps = 44/411 (10%)
Query: 37 GLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLC----YVEFA 92
L L GIG + + Q G F++A L A L E +
Sbjct: 8 TLATWQLWGIGVGYVISGDYAGWNFGLAQGGW---GGFVVATLLVATMYLTFCFSLAELS 64
Query: 93 SRISKSGSAYNYTYLSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLES 152
+ I +G Y + + G + ++ G A IEF+ A A F
Sbjct: 65 TMIPTAGGGYGFARRAFGPWGGFLAGT---------AILIEFAFAPPAIACFI------- 108
Query: 153 GGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWGVSESTRLNSVFTFLNLGTVVVI 212
G +L F A ++ + GV E+ +L V T + + + V
Sbjct: 109 -GAYCESL------FPVGPGWLAALVFYIVFIGINILGVGEAAKLEFVVTAVAIIALGVF 161
Query: 213 VGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGFDCIATT 272
+G+ + + N + P+T G F P G+ + F+ + +A
Sbjct: 162 IGAMVPHFDSANLF----NGPQT----GASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMA 213
Query: 273 GEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYE-QDAEAPFPHIFDSL---G 328
EE+KNPKRDIP ++ ++ + I +V E + P P +S+
Sbjct: 214 AEETKNPKRDIPRGLIGAILTLLALAAGILVVGPGAADAKELMGSNNPLPEALESIYGGS 273
Query: 329 WPVMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLL 388
+ +++ VG LF L+ + G ++ R ++A+S G L + S V+ R K PVL+ ++
Sbjct: 274 TWMSQFVNLVG-LFGLIASFHGIIYGYSRQIFALSRAGYLPESLSKVN-RKKAPVLAIVV 331
Query: 389 TGALTAVLSAVFKLDQLVDMLSIGTLLAYTIVALSVLILRYSEDGADTPIK 439
G + LS + ++ + G +++Y + + LR + P +
Sbjct: 332 PGVIGFGLSLTGQTALIILVSVFGAIISYVLSMAAHFTLRIRRPDMERPYR 382
>gnl|CDD|182566 PRK10580, proY, putative proline-specific permease; Provisional.
Length = 457
Score = 64.1 bits (156), Expect = 9e-11
Identities = 97/412 (23%), Positives = 178/412 (43%), Gaps = 50/412 (12%)
Query: 28 SREKLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLC 87
S+ KL R L + + +G+ +G G++ + K AGPSV++++II +A+ +
Sbjct: 3 SKNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIK-MAGPSVLLAYIIGGVAAYIIMRA 61
Query: 88 YVEFASRISKSGSAYNYTYLSIGEFAAYIIGWN--LELFI----EVQAFCIEFSRIREAA 141
E + + S Y ++G A YI GW E+ I +V AF I
Sbjct: 62 LGEMSVHNPAASSFSRYAQENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMG------ 115
Query: 142 ALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFI-AAGIVMLMSALISWGVSESTRLNSV 200
+ T P +I +V+++ A+ V L
Sbjct: 116 ------------------------VWFPTVPHWIWVLSVVLIICAVNLMSVKVFGELEFW 151
Query: 201 FTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGT-GGFAPFGLNGIIVGAAKC 259
F+F + T+++++ +G+ + W I P + + + GGF G G+++
Sbjct: 152 FSFFKVATIIIMIVAGIGIII---WGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMV 208
Query: 260 FFGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDAE-A 318
F + G + I T E+K+P++ IP +I + V Y+ V+ I P+ + +
Sbjct: 209 MFAYGGIEIIGITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGS 268
Query: 319 PFPHIFDSLGWPVMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPR 378
PF F +G ++ L A L+A+ +F + R+L+ M+ G FS S R
Sbjct: 269 PFVLTFQHMGITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAPKIFSKTSRR 328
Query: 379 TKTPVLSSLLTGALTAVLSAVFKLDQLVD---MLSIGTLLAYTIVALSVLIL 427
P ++ L+ TA+L AV+ L+ ++ L I +L + V + ++IL
Sbjct: 329 -GIPWVTVLVM--TTALLFAVY-LNYIMPENVFLVIASLATFATVWVWIMIL 376
>gnl|CDD|233181 TIGR00913, 2A0310, amino acid permease (yeast). [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 478
Score = 63.5 bits (155), Expect = 1e-10
Identities = 80/417 (19%), Positives = 159/417 (38%), Gaps = 62/417 (14%)
Query: 41 LTLLGIGATLGVGVYVLAGSVAKNQAGP-SVVISFIIAALASALSGLCYVEFASRISKSG 99
+ ++ +G T+G G+ V +G+ A GP ++I + I E A+
Sbjct: 9 IQMIALGGTIGTGLLVGSGT-ALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVS 67
Query: 100 SAYNYTYLS--IGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGET 157
++ TY S + + +GWN + +++ L L +L +
Sbjct: 68 GSFA-TYASRFVDPAFGFAVGWN---------YWLQW--------LIVLPLELVTASMTI 109
Query: 158 STLTTDRYSFLSTYPD-----FIAAGIVMLMSALISWGVSE----STRLNSVFTFLNLGT 208
T P F +++ + + +G +E S ++ ++ F+ L
Sbjct: 110 QYWTD------KVNPAVWIAIFYVFIVIINLFGVKGYGEAEFWFSSIKILAIIGFIILSI 163
Query: 209 VVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGFDC 268
++ G N R P G GG + + A F F G +
Sbjct: 164 ILNCGGGP----NHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAA----FSFGGTEL 215
Query: 269 IATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPY----------YEQDAEA 318
+A T E+ NP++ IP + + + + V Y+ ++ ++PY A +
Sbjct: 216 VALTAGEAANPRKSIPRAAKRTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAAS 275
Query: 319 PFPHIFDSLGWPVMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPR 378
PF + G V+ + L ++L+A +L+ R LYA++ GL F+YV R
Sbjct: 276 PFVIAIQNHGIKVLPHIFNAVILISVLSAANSSLYASSRTLYALAHQGLAPKIFAYVD-R 334
Query: 379 TKTPVLSSLLTGA--LTAVLSAVFKLDQ----LVDMLSIGTLLAYTIVALSVLILRY 429
P ++ +++ L A L+ K + L+++ + + + LS + R
Sbjct: 335 RGVPYVAVIVSSLFGLLAFLAVSKKEAEVFTWLLNISGLSGFFTWMCICLSHIRFRK 391
>gnl|CDD|185009 PRK15049, PRK15049, L-asparagine permease; Provisional.
Length = 499
Score = 63.1 bits (153), Expect = 2e-10
Identities = 77/354 (21%), Positives = 147/354 (41%), Gaps = 57/354 (16%)
Query: 30 EKLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYV 89
E + +G + ++ IG +G G+++ AG+ + AGP++ + ++I L S
Sbjct: 24 EGYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQ-MAGPALALVYLICGLFSFFILRALG 82
Query: 90 EFASRISKSGSAYNYTYLSIGEFAAYI------IGWNLELFIEVQAFCIEFSRIREAAAL 143
E SGS +Y +GE AAY+ I W + +++ A
Sbjct: 83 ELVLHRPSSGSFVSYAREFLGEKAAYVAGWMYFINWAMTGIVDITAV------------- 129
Query: 144 FRLLKQLESGGGETSTLTTDRYSFLSTYPDFI----AAGIVMLMSAL-ISWGVSES---- 194
L + P ++ A IV M+ + + W
Sbjct: 130 ---------------ALYMHYWGAFGGVPQWVFALAALTIVGTMNMIGVKWFAEMEFWFA 174
Query: 195 -TRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGII 253
++ ++ TFL +GTV + G L N + + ++ GGF P GL +
Sbjct: 175 LIKVLAIVTFLVVGTVFLGSGQPL-DGNTTGFHLITDN----------GGFFPHGLLPAL 223
Query: 254 VGAAKCFFGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYE 313
V F F + + T E K+P+ +P +I ++ + + Y+ ++L +++P+
Sbjct: 224 VLIQGVVFAFASIEMVGTAAGECKDPQTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSA 283
Query: 314 -QDAEAPFPHIFDSLGWPVMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDG 366
Q ++PF F LG P + ++ + L A L+++ L+ RIL +M++ G
Sbjct: 284 YQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAMGG 337
>gnl|CDD|220604 pfam10155, DUF2363, Uncharacterized conserved protein (DUF2363).
This is a region of 120 amino acids of a family of
proteins conserved from plants to humans. The function
is not known.
Length = 126
Score = 58.1 bits (141), Expect = 3e-10
Identities = 19/28 (67%), Positives = 25/28 (89%)
Query: 122 ELFIEVQAFCIEFSRIREAAALFRLLKQ 149
+LF E+QAFC+EFS+IREA ALF+L+K
Sbjct: 99 DLFTELQAFCLEFSKIREATALFKLIKN 126
>gnl|CDD|182297 PRK10197, PRK10197, gamma-aminobutyrate transporter; Provisional.
Length = 446
Score = 62.3 bits (151), Expect = 3e-10
Identities = 99/405 (24%), Positives = 168/405 (41%), Gaps = 58/405 (14%)
Query: 43 LLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRISKSGSAY 102
+L I +G ++V SVA +AGP+V+++++ A L + E A +GS
Sbjct: 1 MLSIAGVIGASLFV-GSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFS 59
Query: 103 NYTYLSIGEFAAYIIG------WNLELFIEVQ-AFCIEFSRIREAAA-LFRLLKQLE-SG 153
Y +IG +A Y IG W L + +E A I S + LF L+ L +G
Sbjct: 60 TYADKAIGRWAGYTIGWLYWWFWVLVIPLEANIAAMILHSWVPGIPIWLFSLVITLALTG 119
Query: 154 GGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWGVSESTRLNSVFTFLNLGTVVVIV 213
S + F IA + F+ LG V +
Sbjct: 120 SNLLSVKNYGEFEFWLALCKVIA-----------------------ILAFIFLGAVAI-- 154
Query: 214 GSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGFDCIATTG 273
SG + ++ R +GGF P G ++ F F+G + +
Sbjct: 155 -SGFYPY---------AEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAA 204
Query: 274 EESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDAEA--PFPHIFDSLGWPV 331
ES P++ I + ++ + + YL V+ +IP+ +A + + + L P
Sbjct: 205 AESDTPEKHIVRATNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNIPH 264
Query: 332 MKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLL-TG 390
K ++ L ++ + + AL+ R+LY++S G ++ R+KTP ++ LL TG
Sbjct: 265 AKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKIN-RSKTPYVAVLLSTG 323
Query: 391 A--LTAVL-----SAVFKLDQLVDMLSIGTLLAYTIVALSVLILR 428
A LT V+ + VFK L+D LL Y ++A+S L +R
Sbjct: 324 AAFLTVVVNYYAPAKVFKF--LIDSSGAIALLVYLVIAVSQLRMR 366
>gnl|CDD|132469 TIGR03428, ureacarb_perm, permease, urea carboxylase system. A
number of bacteria obtain nitrogen by biotin- and
ATP-dependent urea degradation system distinct from
urease. The two characterized proteins of this system
are the enzymes urea carboxylase and allophanate
hydrolase, but other, uncharacterized proteins co-occur
as genes encoded nearby in multiple organisms. This
family includes predicted permeases of the amino acid
permease family, likely to transport either urea or a
compound from which urea is derived. It is found so far
only Actinobacteria, whereas a number of other species
with the urea carboxylase have an adjacent ABC
transporter operon.
Length = 475
Score = 61.4 bits (149), Expect = 6e-10
Identities = 95/386 (24%), Positives = 154/386 (39%), Gaps = 51/386 (13%)
Query: 66 AGPSVVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLSIGEFAAYIIGWNLELFI 125
GP+ ++ + + L L + E A+R SG+ Y ++ GE + GW + +
Sbjct: 45 GGPAFFWTWPVVFVGQLLVALNFAELAARYPISGAIYQWSRRMGGEVIGWFAGWFMIIAQ 104
Query: 126 EVQAFCIEFSRIREAAALFRLLKQLESGG---GETSTLTTDRYSFLSTYPDFIAAGIVML 182
V A A AL +L + SG GE TLT+ AA V+L
Sbjct: 105 IVTAAA-------AAIALQVVLPNIWSGFQIIGEDPTLTSPSG----------AANAVLL 147
Query: 183 MSALI-------SWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRT 235
S L+ GV +R+N++ + V+ ++G LF R P
Sbjct: 148 GSVLLVLTTVINCIGVEWMSRVNTIGVTCEIVGVLAVIGV-LFTHAQRG--------PGV 198
Query: 236 VRHGGTGGFAPFGLNGIIVGAAKCFFGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVF 295
V G +P +V + VGF EE+KNP+R P +IL +L +
Sbjct: 199 VFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNPRRVAPRTILTALSVSA 258
Query: 296 VCYLAIAIVLTLIIPYYEQD--AEAPFPHIFDS-LGWPVMKWLVTVGSLFALLTAMFGAL 352
+ + + + P A P++ + L P L+ V A+L
Sbjct: 259 LGGGLMILGALMAAPSLTDGRLAAEGLPYVLSAVLDSPWGTVLL-VDVAIAILVCTLAIQ 317
Query: 353 FPLPRILYAMSLDGLL--YDCFSYVSPRTKTPVLSSLLTGALTAVL-------SAVFKLD 403
R++++M+ DG L S V PRT TP+L S++ G L + SA+F
Sbjct: 318 TAGSRLMFSMARDGKLPASAQLSRVHPRTGTPILPSIVIGVLCIGILLINVGNSALFA-- 375
Query: 404 QLVDMLSIGTLLAYTIVALSVLILRY 429
L + + LAY +V + +L+ R
Sbjct: 376 TLASVCIVLIYLAYLLVTVPLLLRRL 401
>gnl|CDD|129983 TIGR00905, 2A0302, transporter, basic amino acid/polyamine
antiporter (APA) family. This family includes several
families of antiporters that, rather commonly, are
encoded next to decarboxylases that convert one of the
antiporter substrates into the other. This arrangement
allows a cycle that can remove proteins from the
cytoplasm and thereby protect against acidic conditions
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 473
Score = 59.7 bits (145), Expect = 2e-09
Identities = 85/412 (20%), Positives = 161/412 (39%), Gaps = 47/412 (11%)
Query: 30 EKLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYV 89
E ++ LGL LT L IG+ +G G++ L ++A +V+I +II + +
Sbjct: 3 EAKSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFA 62
Query: 90 EFASRIS-KSGSAYNYTYLSIGEFAAYIIGWNLEL---FIEVQAFCIEFSRIREAAALFR 145
A++ G Y Y G + ++ GW L V + FS + LF
Sbjct: 63 ILATKKPELDGGIYAYAREGFGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFG 122
Query: 146 LLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWGVSESTRLNSVFTFLN 205
+ S G A+ ++ + + L+ GV ++ +N++ T
Sbjct: 123 SGNPVPSILG--------------------ASVLLWVFTFLVLRGVRQAAFINTITTIAK 162
Query: 206 LGTVV--VIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGF 263
L + +I+G FK + D H + F + + + F
Sbjct: 163 LIPLFLFIIIGWFWFK-----LDLFTADF---WGHDVPSLGSVF--SQVKNTMLVTLWVF 212
Query: 264 VGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDAEAPFPHI 323
+G + + +KN K D+ + +L V Y+ I ++ ++P E A P P +
Sbjct: 213 IGIEGAVVSSGRAKN-KSDVGKATVLGTLGALVIYILITLLSLGVLPQQEL-ANLPNPSM 270
Query: 324 FDSLGWPVMKW---LVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTK 380
L V KW L+++G + ++L ++ + ++ + DGL F V+
Sbjct: 271 AAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFSAAKDGLFPKIFGRVNKN-G 329
Query: 381 TPVLSSLLTGALTAVLSAVFKL--DQLVDMLSIGT---LLAYTIVALSVLIL 427
P ++ LLT L + + L ++S+ L+ Y + A +L L
Sbjct: 330 APSVALLLTNILIQLFLLLTLLTSSAYNVLVSLAVVMILVPYLLSAAYLLKL 381
>gnl|CDD|236823 PRK11021, PRK11021, putative transporter; Provisional.
Length = 410
Score = 55.3 bits (134), Expect = 4e-08
Identities = 57/227 (25%), Positives = 88/227 (38%), Gaps = 26/227 (11%)
Query: 174 FIAAGIVMLMSALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIP 233
+ L+ L G S S L +V L + VV I +G I+ DIP
Sbjct: 117 LAELLTLALLWLLNLRGASSSANLQTVIALLIVALVVAIWWAG---------DIKPADIP 167
Query: 234 RTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGFDCIATTGEESKNPKRDIPLSILLSLFI 293
+G+ F+ FVG + A E KNP+RD P ++++ L +
Sbjct: 168 FPA-------PGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLL 220
Query: 294 VFVCYLAIAIVLTLIIPYY--EQDAEAPFPHIFDSLGWPVMKWLVTVGSLFALLTAMFGA 351
+ Y A V+ L P Y +Q A A P IF L W++ V A ++
Sbjct: 221 AGLVYWACT-VVVLHFPAYGDKQAAAASLPGIFVQLFGGYALWVICVIGYLACFASVNIY 279
Query: 352 LFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSA 398
R++++ + +G + +S R PV AL AVL
Sbjct: 280 TQSFARLVWSQAREGRPPSYLARLSAR-GVPV------NALNAVLGC 319
>gnl|CDD|182767 PRK10836, PRK10836, lysine transporter; Provisional.
Length = 489
Score = 53.7 bits (129), Expect = 2e-07
Identities = 88/367 (23%), Positives = 157/367 (42%), Gaps = 61/367 (16%)
Query: 32 LARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPS-VVISFIIAALASALSGLCYVE 90
L R L LT++ IG ++G G++V +G+ +QAGP ++S+++ L E
Sbjct: 13 LRRELKARHLTMIAIGGSIGTGLFVASGATI-SQAGPGGALLSYMLIGLMVYFLMTSLGE 71
Query: 91 FASRISKSGSAYNYTYLSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQL 150
A+ + SGS Y + E + +GWN V A+ + QL
Sbjct: 72 LAAYMPVSGSFATYGQNYVEEGFGFALGWNYWYNWAV------------TIAVDLVAAQL 119
Query: 151 ESGGGETSTLTTDRYSFLSTYPDFIAA----GIVMLMSALISWGVSES------TRLNSV 200
+ F T P +I + G++ L++ + G E+ ++ +V
Sbjct: 120 VMS-----------WWFPDT-PGWIWSALFLGVIFLLNYISVRGFGEAEYWFSLIKVTTV 167
Query: 201 FTFLNLGTVVVIVG--SGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAK 258
F+ +G V++I+G G NW I D P GGFA +IVG
Sbjct: 168 IVFIIVG-VLMIIGIFKGAEPAGWSNWTI--GDAPFA------GGFAAMIGVAMIVG--- 215
Query: 259 CFFGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQD--- 315
F F G + I ES++P ++IP ++ + + + Y+ ++++LIIPY +
Sbjct: 216 --FSFQGTELIGIAAGESEDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLR 273
Query: 316 ------AEAPFPHIFDSLGWPVMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLY 369
+ +PF +F G ++ L A+L+A ++ R+LY ++ DG
Sbjct: 274 NDVKDISVSPFTLVFQHAGLLSAAAVMNAVILTAVLSAGNSGMYASTRMLYTLACDGKAP 333
Query: 370 DCFSYVS 376
F+ +S
Sbjct: 334 RIFAKLS 340
>gnl|CDD|233567 TIGR01773, GABAperm, gamma-aminobutyrate permease. GABA permease
(gabP) catalyzes the translocation of 4-aminobutyrate
(GABA) across the plasma membrane, with homologues
expressed in Gram-negative and Gram-positive organisms.
This permease is a highly hydrophobic transmembrane
protein consisting of 12 transmembrane domains with
hydrophilic N- and C-terminal ends. Induced by
nitrogen-limited culture conditions in both Escherichia
coli and Bacillus subtilis, gabP is an energy dependent
transport system stimulated by membrane potential and
has been observed adjacent and distant from other GABA
degradation proteins. GabP is highly homologous to amino
acid permeases from B. subtilis, E. coli, as well as to
other members of the amino acid permease family
(pfam00324). A member of the APC
(amine-polyamine-choline) transporter superfamily, GABA
permease possesses a "consensus amphiphatic region"
(CAR) found to be evolutionarily conserved within this
transport family. This amphiphatic region is located
between helix 8 and cytoplasmic loop 8-9, forming a
potential channel domain and suggested to play a
significant role in ligand recognition and
translocation. Unique to GABA permeases, a conserved
cysteine residue (CYS-300, E.coli) located at the
beginning of the amphiphatic domain, has been determined
to be critical for catalytic specificity [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 452
Score = 52.9 bits (127), Expect = 2e-07
Identities = 52/213 (24%), Positives = 95/213 (44%), Gaps = 19/213 (8%)
Query: 240 GTGGFAPFGLNGIIVGAAKCFFGFVGFDCIATTGEESKNPKRDIPL---SILLSLFIVFV 296
G GGF P G+ +++ F F+G + + ES NP + I S++ + + ++
Sbjct: 191 GKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKSITRATNSVIWRIIVFYL 250
Query: 297 CYLAIAIVLTLIIPYYEQD--AEAPFPHIFDSLGWPVMKWLVTVGSLFALLTAMFGALFP 354
+ I + L +P+ + + + + LG P K ++ L A+L+ + AL+
Sbjct: 251 GSIFIVVAL---LPWNSPNLLEVGSYVAVLELLGIPHAKLIMDFVVLTAVLSCLNSALYT 307
Query: 355 LPRILYAMSLDGLLYDCFSYVSPRTKTP---VLSSLLTGALTAVLS-----AVFKLDQLV 406
R+LY+++ G F ++ + P VL+S LT V++ VF LV
Sbjct: 308 TSRMLYSLAERGDAPRVFMKLN-KKGVPVQAVLASTFFSFLTVVVNYFAPDKVFLF--LV 364
Query: 407 DMLSIGTLLAYTIVALSVLILRYSEDGADTPIK 439
+ LL Y ++A+S L +R IK
Sbjct: 365 NSSGAIALLVYLVIAVSQLRMRKKLKANGEAIK 397
Score = 44.5 bits (105), Expect = 1e-04
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 41 LTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRISKSGS 100
+T+L I +G G++V +GS AGP+ ++++++A L E A +GS
Sbjct: 19 VTMLSIAGVIGAGLFVGSGSAI-ASAGPAALLAYLLAGLLVVFIMRMLGEMAVANPDTGS 77
Query: 101 AYNYTYLSIGEFAAYIIGW 119
Y +IG +A + IGW
Sbjct: 78 FSTYADDAIGRWAGFTIGW 96
>gnl|CDD|233178 TIGR00907, 2A0304, amino acid permease (GABA permease). [Transport
and binding proteins, Amino acids, peptides and amines].
Length = 482
Score = 50.5 bits (121), Expect = 1e-06
Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 12/191 (6%)
Query: 241 TGGFAPFGLNGIIVGAAKCFFGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFV---C 297
TGG+ P G ++G + G+D A EE +NP+ P +I+ ++ I V C
Sbjct: 209 TGGWKPGGF-AFLLGLLNPAWSMTGYDGTAHMAEEIENPEVVGPRAIIGAVAIGIVTGFC 267
Query: 298 Y-LAIAIVLTLIIPYYEQDAEAPFPHIF-DSLGWPVMKWLVTVGSLFALLTAMFGALFPL 355
+ + + + I P IF ++LG + L +
Sbjct: 268 FNIVLFFSMGDIDSLISSTTGQPIAQIFYNALGNKAGAIFLLCLILVTSFFCAITCMTAN 327
Query: 356 PRILYAMSLDGLL--YDCFSYVSPRTKTPVLSSLLTGALTAVLSAVFKLDQLVDMLSIGT 413
R++YA S DG L +S V+PRT+ P+ + L+AV + L L +
Sbjct: 328 SRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVW----LSAVWIILIGLLGLGSSTAFQA 383
Query: 414 LLAYTIVALSV 424
+ + VAL V
Sbjct: 384 IFSVCTVALDV 394
>gnl|CDD|236830 PRK11049, PRK11049, D-alanine/D-serine/glycine permease;
Provisional.
Length = 469
Score = 48.6 bits (116), Expect = 6e-06
Identities = 35/138 (25%), Positives = 68/138 (49%), Gaps = 1/138 (0%)
Query: 242 GGFAPFGLNGIIVGAAKCFFGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAI 301
GG P GL+G G F FVG + + TT E+K+P++ +P +I + + Y+
Sbjct: 203 GGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKSLPRAINSIPIRIIMFYVFA 262
Query: 302 AIVLTLIIPYYEQDA-EAPFPHIFDSLGWPVMKWLVTVGSLFALLTAMFGALFPLPRILY 360
IV+ + P+ ++PF +F +G P ++ L + ++ +F R+L+
Sbjct: 263 LIVIMSVTPWSSVVPDKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVFSTSRMLF 322
Query: 361 AMSLDGLLYDCFSYVSPR 378
++ +G+ F+ +S R
Sbjct: 323 GLAQEGVAPKAFAKLSKR 340
>gnl|CDD|213912 TIGR04299, antiport_PotE, putrescine-ornithine antiporter. Members
of this protein family are putrescine-ornithine
antiporter. They work together with an enzyme that
decarboxylates ornithine to putrescine. This two-gene
system has the net effect of removing a protein from the
cytosol, providing transient resistance to acid
conditions.
Length = 430
Score = 45.7 bits (108), Expect = 4e-05
Identities = 71/364 (19%), Positives = 142/364 (39%), Gaps = 37/364 (10%)
Query: 36 LGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRI 95
+ + LT+L +G G+ +L ++A Q G +IS+++ A+ + +
Sbjct: 6 MSVVQLTILTAVNMMGSGIIMLPTNLA--QVGTMSIISWLVTAVGAMALAWAFARAGMYS 63
Query: 96 SKSGSAYNYTYLSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRL-LKQLESGG 154
SKSG Y S G+ ++ + + + + I S + A L L ++
Sbjct: 64 SKSGGMGGYAEYSFGKAGNFMANYTYGVSLVIANAAIAISAVGYGAELLGAHLSPVQIAL 123
Query: 155 GETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWGVSESTRLNSVFTFLNLGTVVVIVG 214
L +++T +F A I +S+ WGV + VV I
Sbjct: 124 ATIGVL------WIATVLNFGGARITGQISSFTVWGV--------------IIPVVGISI 163
Query: 215 SGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGFDCIATTGE 274
G F + +A A F +G+ + + F+G + +
Sbjct: 164 IGWFWFSGTLYA-----------DSWNPHHAGF-FSGVGSSISITLWAFLGLESACANTD 211
Query: 275 ESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYE-QDAEAPFPHIFDSLGWPVMK 333
+NPK+++P+++L V Y+ V+ I+P E ++ APF F + P +
Sbjct: 212 VVENPKKNVPIAVLGGTIGAAVMYIISTNVIAGIVPNMELANSNAPFGLAFSQMFNPTVG 271
Query: 334 WLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALT 393
+V + + ++ G F + + + + +G FS TP++ L+ L
Sbjct: 272 KIVMGLMVISCFGSLLGWQFTIAEVFRSSADEGYFPKIFSKTI-GNGTPLIGMLIITILQ 330
Query: 394 AVLS 397
++L+
Sbjct: 331 SLLA 334
>gnl|CDD|182694 PRK10746, PRK10746, putative transport protein YifK; Provisional.
Length = 461
Score = 45.6 bits (108), Expect = 6e-05
Identities = 87/377 (23%), Positives = 162/377 (42%), Gaps = 56/377 (14%)
Query: 28 SREKLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAAL-----ASA 82
++ +L R L + L+ +G T+GVG+++ A S K AGPSV++++IIA L +
Sbjct: 4 NKPELQRGLEARHIELIALGGTIGVGLFMGAASTLK-WAGPSVLLAYIIAGLFVFFIMRS 62
Query: 83 LSGLCYVEFASRISKSGSAYNYTYLSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAA 142
+ + ++E ++ S + Y + Y+S F Y+ W+ F+ + E + I
Sbjct: 63 MGEMLFLE---PVTGSFAVYAHRYMS--PFFGYLTAWSY-WFMWMAVGISEITAIGVYVQ 116
Query: 143 L-FRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVML--MSALISWGVSESTRLNS 199
F + Q P IA +V L ++A+ +G +
Sbjct: 117 FWFPEMAQW--------------------IPALIAVALVALANLAAVRLYG-----EIEF 151
Query: 200 VFTFLNLGTVVVIVGSGL----FKMNPRNWAIRKEDIPRTVRHGG--TGGFAPFGLNGII 253
F + + T++V++ GL F +I ++ HGG GG+ F I
Sbjct: 152 WFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNL---TEHGGFFAGGWKGFLTALCI 208
Query: 254 VGAAKCFFGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYE 313
V A+ + G + I T E+KNP+ + ++ L+ + + Y+ V+ I P+ E
Sbjct: 209 VVAS-----YQGVELIGITAGEAKNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNE 263
Query: 314 QDAE-APFPHIFDSLGWPVMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCF 372
+ +PF F +G ++ L A L+ ++ R+LYA++ + L
Sbjct: 264 IGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAAM 323
Query: 373 SYVSPRTKTPVLSSLLT 389
+ VS R PV ++
Sbjct: 324 AKVS-RHGVPVAGVAVS 339
>gnl|CDD|213911 TIGR04298, his_histam_anti, histidine-histamine antiporter.
Members of this protein family are antiporters that
exchange histidine with histamine, product of histidine
decarboxylation. A system consisting of this protein,
and a histidine decarboxylase encoded by an adjacent
gene, creates decarboxylation/antiport proton-motive
cycle that provides a transient resistance to acidic
conditions.
Length = 429
Score = 42.2 bits (99), Expect = 6e-04
Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 19/156 (12%)
Query: 169 STYPDFIAAGIVMLMSALISWGVSESTRLNSVFTFLNLGTVVVIVGSGL---FKMNPRNW 225
+TY A I+ L S+G + R S F + + VI+G G+ F P +
Sbjct: 118 TTYGCIAAIIILWAFVFLASFGAKVAGRAQS---FTAICGLAVILGVGIFGWFWFKPEMY 174
Query: 226 AIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGFDCIATTGEESKNPKRDIPL 285
+ + II A+ +GF+G + + + +NP++ +P
Sbjct: 175 LEVINATGNS------------NFSAIIAAASIALWGFLGIESAVVSTGQVENPEKTVPK 222
Query: 286 SILLSLFIVFVCYLAIAIVLTLIIPYYE-QDAEAPF 320
+ ++ L I VCY+A V+ IIP+ ++ APF
Sbjct: 223 ATVMGLLIAAVCYVASCTVIAGIIPHEVLINSAAPF 258
>gnl|CDD|233194 TIGR00930, 2a30, K-Cl cotransporter. [Transport and binding
proteins, Other].
Length = 953
Score = 40.1 bits (94), Expect = 0.004
Identities = 41/207 (19%), Positives = 72/207 (34%), Gaps = 36/207 (17%)
Query: 253 IVGAAKCFFGFVGFDCIATTG--------EESKNPKRDIPLSILLSLFIVFVCYLAIAI- 303
I G FF G + TG + K+P++ IP LL++ V YL +
Sbjct: 275 IPGPEGGFFSLFGIFFPSVTGILAGANISGDLKDPQKAIPKGTLLAILTTTVVYLGSVVL 334
Query: 304 ----------------VLTLIIPYYEQDAEAPFPHIFD--------SLGWPVMKWLVTVG 339
++T A + SL P L+T G
Sbjct: 335 FGACVVRDATGDKNDTLVTNCTSAACFSECAHNTCSYGLMNNLQVMSLVSP-FPPLITAG 393
Query: 340 SLFALLTAMFGALFPLPRILYAMSLDGL--LYDCFSYVSPRTKTPVLSSLLTGALTAVLS 397
A L++ +L PR+ A+ D + F + P+ + LLT +
Sbjct: 394 IFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEPLRAYLLTAFIAEGFI 453
Query: 398 AVFKLDQLVDMLSIGTLLAYTIVALSV 424
+ +L+ + ++S L +Y ++ S
Sbjct: 454 LIAELNTIAPIISNFFLASYALINFSC 480
>gnl|CDD|182613 PRK10644, PRK10644, arginine:agmatin antiporter; Provisional.
Length = 445
Score = 37.8 bits (88), Expect = 0.014
Identities = 85/427 (19%), Positives = 162/427 (37%), Gaps = 68/427 (15%)
Query: 33 ARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFA 92
A +GL +TL+ G +G GV++L ++A G + +++ + + + Y + +
Sbjct: 7 AHKVGLIPVTLMVAGNIMGSGVFLLPANLAS--TGGIAIYGWLVTIIGALGLSMVYAKMS 64
Query: 93 SRISKSGSAYNYTYLSIGEFAAY---IIGW------NLELFIEVQAFCIEFSRIREAAAL 143
S G +Y Y G F Y ++ W N+ + + + F
Sbjct: 65 SLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYF--------- 115
Query: 144 FRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWGVSESTRLNSVFTF 203
F +LK T+T ++ + + ++ TR+ +V T
Sbjct: 116 FPILKD-----PLVLTITCVVVLWIFVLLNIVGPKMI--------------TRVQAVATV 156
Query: 204 LNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRH-GGTGGFAPFGLNGIIVGAAKCFFG 262
L L + IVG +F W + + + G G F I +
Sbjct: 157 LAL---IPIVGIAVF-----GWFWFRGETYMAAWNVSGLGTFG-----AIQSTLNVTLWS 203
Query: 263 FVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYE-QDAEAPFP 321
F+G + + KNPKR++P++ + + I VCY+ + + +IP + + +PF
Sbjct: 204 FIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSSTAIMGMIPNAALRVSASPFG 263
Query: 322 HIFDSLGWPVMKWLVTVGSLFAL---LTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPR 378
D+ + + S A L ++ G + A + DGL F+ V+ +
Sbjct: 264 ---DAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVN-K 319
Query: 379 TKTPVLSSLLTGALTAVL-------SAVFKLDQLVDMLSIGTLLAYTIVALSVLILRYSE 431
TPV L+ G L + +A + + + I TL+ Y ++L+L +
Sbjct: 320 AGTPVAGLLIVGVLMTIFQLSSISPNASKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGH 379
Query: 432 DGADTPI 438
G P
Sbjct: 380 FGKARPA 386
>gnl|CDD|182458 PRK10435, cadB, lysine/cadaverine antiporter; Provisional.
Length = 435
Score = 36.3 bits (84), Expect = 0.039
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 259 CFFGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDAE- 317
C + FVG + A + KNPKR +PL+ +L + + Y+A V++ + P A
Sbjct: 196 CLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTGLAGIIYIAATQVISGMFPASVMAASG 255
Query: 318 APFP----HIFDSLGWPVMKWLVTVGSLFALLTAM 348
APF I + P+ V+ + FA LT++
Sbjct: 256 APFAISASTILGNWAAPL----VSAFTAFACLTSL 286
>gnl|CDD|163522 TIGR03810, arg_ornith_anti, arginine-ornithine antiporter. Members
of this protein family are the arginine/ornithine
antiporter, ArcD. This exchanger of ornithine for
arginine occurs in a system with arginine deiminase,
ornithine carbamoyltransferase, and carbamate kinase,
with together turn arginine to ornithine with the
generation of ATP and release of CO2 [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 468
Score = 35.8 bits (83), Expect = 0.057
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 36 LGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRI 95
LGL LT L +G+ +G G++ L +A A +V+I ++I + + A++
Sbjct: 3 LGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKK 62
Query: 96 SK-SGSAYNYTYLSIGEFAAYIIGW 119
+ G Y+Y G F +I W
Sbjct: 63 PELDGGVYSYAKAGFGPFMGFISAW 87
>gnl|CDD|129988 TIGR00910, 2A0307_GadC, glutamate:gamma-aminobutyrate antiporter.
Lowered cutoffs from 1000/500 to 800/300, promoted from
subfamily to equivalog, and put into a Genome Property
DHH 9/1/2009 [Transport and binding proteins, Amino
acids, peptides and amines].
Length = 507
Score = 36.0 bits (83), Expect = 0.059
Identities = 43/165 (26%), Positives = 79/165 (47%), Gaps = 9/165 (5%)
Query: 263 FVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAI-AIVLTLIIPYYEQDAEAPFP 321
++G + A+ E +NP RD PL+++L L I +C AI + +IP E + A
Sbjct: 207 YMGVEASASHINELENPGRDYPLAMIL-LMIAAICLDAIGGFSIAAVIPGKEINLSAGVI 265
Query: 322 HIFDSLGW---PVMKWLVTVGS---LFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYV 375
F +L ++WLV V + F +L + + R ++A + GLL F+ +
Sbjct: 266 QTFQTLILHFAHEIEWLVKVIAALIAFGVLAEIASWIVGPSRGMFAAAQKGLLPAAFAKM 325
Query: 376 SPRTKTPVLSSLLTGALTAVLSAVFKLDQLVDMLSIGTLLAYTIV 420
+ + + PV ++ G +T++ A+ + LS +A T+V
Sbjct: 326 N-KHEVPVPLVIIQGIITSIAGAILTFGGGGNNLSFLIAIALTVV 369
>gnl|CDD|182622 PRK10655, potE, putrescine transporter; Provisional.
Length = 438
Score = 35.0 bits (81), Expect = 0.11
Identities = 76/373 (20%), Positives = 146/373 (39%), Gaps = 55/373 (14%)
Query: 36 LGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRI 95
+G+ LT+L +G G+ +L +A Q G ++S+++ A+ S + +
Sbjct: 8 MGVVQLTILTAVNMMGSGIIMLPTKLA--QVGTISILSWLVTAVGSMALAYAFAKCGMFS 65
Query: 96 SKSGSAYNYTYLSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRL-LKQLESGG 154
KSG Y + G+ ++ + + + + I S + LF L ++
Sbjct: 66 RKSGGMGGYAEYAFGKSGNFMANYTYGVSLLIANVAIAISAVGYGTELFGATLSPVQICL 125
Query: 155 GETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWGVSESTRLNSVFTFLNLGTVVVIVG 214
L +L T +F A I +S++ WGV + VV +
Sbjct: 126 ATIGVL------WLCTVANFGGARITGQISSVTVWGV--------------IIPVVGLSI 165
Query: 215 SGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGL---NGIIVGAAKCFFGFVGFDCIAT 271
G F +P + + P L + + A + F+G +
Sbjct: 166 IGWFWFSPSLYV---------------AAWNPHHLPFFSAVGSSIAMTLWAFLGLESACA 210
Query: 272 TGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYE-QDAEAPFPHIFDSLGWP 330
+ +NP+R++P+++L V Y+ V+ I+P E ++ APF L +
Sbjct: 211 NSDAVENPERNVPIAVLGGTLGAAVIYIVSTNVIAGIVPNMELANSTAPF-----GLAFA 265
Query: 331 VMKWLVTVGSLFALLTAM--FGAL----FPLPRILYAMSLDGLLYDCFSYVSPRTKTPVL 384
M + TVG + L M G+L F + ++ + + +G FS V+ + PV
Sbjct: 266 QM-FNPTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSSADEGYFPKIFSRVT-KVDAPVQ 323
Query: 385 SSLLTGALTAVLS 397
L+ + ++LS
Sbjct: 324 GMLIIVVIQSLLS 336
>gnl|CDD|112053 pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine permease family.
Length = 393
Score = 34.2 bits (79), Expect = 0.16
Identities = 33/185 (17%), Positives = 59/185 (31%), Gaps = 23/185 (12%)
Query: 42 TLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRISKSGSA 101
L+ G +G G+ L + A PS+++ I++ SGL +E G+
Sbjct: 9 VLIIAGTAIGAGMLALPVATAGAGFIPSLLL-LILSWFLMLASGLLLLE-VYLWYPEGA- 65
Query: 102 YNYTYLSIGEFAAYIIG--WNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETST 159
S A ++G N+ + + A L+ L SGGG +
Sbjct: 66 ------SFNTLAKDLLGKKGNI------------IAGLVYAFLLYILTYAYISGGGSILS 107
Query: 160 LTTDRYSFLSTYPDFIAAGIVMLMSALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFK 219
+ +L + G R+N V F + ++ L K
Sbjct: 108 RVIPEMFGIPWSARAAPLIFTLLFGPFVWAGTKAVDRINRVLIFGKIIAFALVFSGLLPK 167
Query: 220 MNPRN 224
+
Sbjct: 168 IKGDL 172
>gnl|CDD|220380 pfam09751, Es2, Nuclear protein Es2. This entry is of a family of
proteins of approximately 500 residues with alternating
regions of low complexity and conservation where the
domain similarities are strong. Apart from a predicted
coiled-coil domain, no other known functional domains
have been characterized. The protein appears to be
expressed in the nucleus and particularly highly in the
pons sub-region of the brain. The protein is clearly
necessary for normal development of the nervous system.
Length = 390
Score = 34.0 bits (78), Expect = 0.19
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 134 FSRIREAAALFRLLKQLESGGGETSTLT--TDRYSFLSTYPDFIAAGIVMLMSALISWGV 191
S I+EA A K E G + T + Y+F+ T A V S L++WG
Sbjct: 256 KSAIQEAIAGKARAKDGEVGEDGKGSETPRVNGYAFVDTP---SPAPGVDE-SPLMTWGE 311
Query: 192 SESTRL 197
+ T L
Sbjct: 312 IDGTPL 317
>gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
This group is a member of the medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, but lacks the zinc-binding
sites of the zinc-dependent alcohol dehydrogenases. The
medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 328
Score = 33.3 bits (77), Expect = 0.27
Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 11/95 (11%)
Query: 323 IFDSLGWPVMKWLVTVGSLFALLTAMFGAL----FPLPRILYA---MSLDGLLYDCFSYV 375
+FD +G P L + L ++GAL P P ++ G D +
Sbjct: 217 VFDPVGGPQFAKLADALAPGGTL-VVYGALSGEPTPFPLKAALKKSLTFRGYSLDEITLD 275
Query: 376 S---PRTKTPVLSSLLTGALTAVLSAVFKLDQLVD 407
R +L L +GAL V+ VF D +V+
Sbjct: 276 PEARRRAIAFILDGLASGALKPVVDRVFPFDDIVE 310
>gnl|CDD|219102 pfam06600, DUF1140, Protein of unknown function (DUF1140). This
family consists of several short, hypothetical phage and
bacterial proteins. The function of this family is
unknown.
Length = 107
Score = 31.9 bits (72), Expect = 0.27
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 132 IEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYP 172
+EF IRE + L L +L+ + L DRYSF++ Y
Sbjct: 58 LEFY-IREKSFLLHQLLELDRSYRWSEKLHQDRYSFVTKYV 97
>gnl|CDD|222812 PHA00727, PHA00727, hypothetical protein.
Length = 278
Score = 33.3 bits (76), Expect = 0.29
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 30 EKLARVLGLTDLTLLGIGATLGVGVYVLAG 59
E LA+V DL +L IGA +G+G+ V G
Sbjct: 204 EALAKVGSGPDLMMLIIGAIMGIGIGVAIG 233
>gnl|CDD|233729 TIGR02103, pullul_strch, alpha-1,6-glucosidases, pullulanase-type.
Members of this protein family include secreted (or
membrane-anchored) pullulanases of Gram-negative
bacteria and pullulanase-type starch debranching enzymes
of plants. Both enzymes hydrolyze alpha-1,6 glycosidic
linkages. Pullulan is an unusual, industrially important
polysaccharide in which short alpha-1,4 chains
(maltotriose) are connected in alpha-1,6 linkages.
Enzymes that cleave alpha-1,6 linkages in pullulan and
release maltotriose are called pullulanases although
pullulan itself may not be the natural substrate. This
family is closely homologous to, but architecturally
different from, the Gram-positive pullulanases of
Gram-positive bacteria (TIGR02102) [Energy metabolism,
Biosynthesis and degradation of polysaccharides].
Length = 898
Score = 31.3 bits (71), Expect = 1.6
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 17/87 (19%)
Query: 129 AFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALIS 188
AF +E RIR ++ LFRL +T+ R F +T PD I IVM +
Sbjct: 773 AFFLELLRIRSSSPLFRL---------DTAAEVMKRVDFRNTGPDQIPGLIVMSIDDGGI 823
Query: 189 WGVSESTRLNSVFTFLNLGTVVVIVGS 215
+ L+ +VVI +
Sbjct: 824 QAGA---SLDP-----RYDGIVVIFNA 842
>gnl|CDD|211918 TIGR04195, S_glycosyl_SunS, peptide S-glycosyltransferase, SunS
family. Members of this family include SunS, the
S-glycosyltransferase that transfers a sugar (substrate
is variable in reconstitution assays) onto the precursor
of the glycopeptide sublancin, which once was thought to
be a lantibiotic.
Length = 422
Score = 29.9 bits (67), Expect = 3.6
Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
Query: 121 LELFIEVQAFCIEFSRIREAAALFRLLKQLES--GGGETSTLTTDRYSFLSTYPDFIAAG 178
L++ E Q C + R A + +L L ++YS + + D A
Sbjct: 318 LDILEEEQPLCSDVDYFRSAILFVDIQLKLGKLLDNLIDEALEDEKYSAIDSSKDHFKAI 377
Query: 179 IVMLMSALISW 189
++ L + W
Sbjct: 378 LIELNCQIDDW 388
>gnl|CDD|226645 COG4177, LivM, ABC-type branched-chain amino acid transport system,
permease component [Amino acid transport and
metabolism].
Length = 314
Score = 29.9 bits (68), Expect = 3.6
Identities = 20/62 (32%), Positives = 30/62 (48%)
Query: 35 VLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASR 94
V+G L LG A G+G Y A +A+ G S ++ ++ L +AL GL A R
Sbjct: 48 VVGYAGLLSLGHAAFFGLGAYTAALLLARLLGGLSFWLALLLGGLVAALLGLLLGLPALR 107
Query: 95 IS 96
+
Sbjct: 108 LR 109
>gnl|CDD|235503 PRK05561, PRK05561, DNA topoisomerase IV subunit A; Validated.
Length = 742
Score = 30.1 bits (69), Expect = 4.1
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 357 RILYAMSLDGLLYD 370
RILYAMS GL D
Sbjct: 49 RILYAMSELGLTPD 62
>gnl|CDD|237258 PRK12903, secA, preprotein translocase subunit SecA; Reviewed.
Length = 925
Score = 29.6 bits (67), Expect = 5.3
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 9/60 (15%)
Query: 28 SREKLARVLGLT--DLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSG 85
+RE RVLG D+ ++G G+ + GSVA+ + G I+ I +AL+G
Sbjct: 67 AREATKRVLGKRPYDVQIIG-------GIILDLGSVAEMKTGEGKTITSIAPVYLNALTG 119
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and
metabolism].
Length = 415
Score = 29.5 bits (67), Expect = 5.7
Identities = 54/320 (16%), Positives = 108/320 (33%), Gaps = 43/320 (13%)
Query: 42 TLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRISKSGSA 101
L+ G +G GV L + P +++ IIA + LS L +E ++
Sbjct: 15 VLILAGTAIGAGVLFLPVAFGGGGFWPGLLL-LIIAWPLTYLSLLLLLEALLSSPNGKAS 73
Query: 102 YNYTYLS-IGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTL 160
+G+ +IG L F + + + G ++
Sbjct: 74 ITSLVEDYLGKKGGILIG--LSYFFALYGLLVAYIVG---------------IGNLLASF 116
Query: 161 TTDRYSFLSTYPDFIAAGIVMLMSALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKM 220
+++ + ++++ L G ++ S+ F + +V++V +
Sbjct: 117 LGNQFGLNPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGKVIYLVLLVVYLIPHW 176
Query: 221 NPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGFDCIATTGEE-SKNP 279
NP N F + L I V F F I + KN
Sbjct: 177 NPANLFALPSASQ---------SFWKYLLLAIPV----FVFSFGFHGNIPSLVNYMRKNS 223
Query: 280 KRDIPLSILLSLFIVFVCYLAIA---------IVLTLIIPYYEQDAEAPFPHIFDSLGWP 330
K+ + +IL+ I V Y+ + +V I+ EQ+ + + P
Sbjct: 224 KKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLL-SALAGVINSP 282
Query: 331 VMKWLVTVGSLFALLTAMFG 350
++ + + +LFA+ T+ G
Sbjct: 283 ILSIALNIFALFAIATSFLG 302
>gnl|CDD|181662 PRK09125, PRK09125, DNA ligase; Provisional.
Length = 282
Score = 29.1 bits (66), Expect = 6.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 132 IEFSRIREAAALFRLLKQLESGGGE 156
IE R+R AAL + L Q+ + GGE
Sbjct: 153 IEQIRVRSEAALQQFLDQIVAAGGE 177
>gnl|CDD|163525 TIGR03813, put_Glu_GABA_T, putative glutamate/gamma-aminobutyrate
antiporter. Members of this protein family are putative
putative glutamate/gamma-aminobutyrate antiporters. Each
member of the seed alignment is found adjacent to a
glutamate decarboxylase, which converts glutamate (Glu)
to gamma-aminobutyrate (GABA). However, the majority
belong to genome contexts with a glutaminase (converts
Gln to Glu) as well as the decarboxylase that converts
Glu to GABA. The specificity of the transporter remains
uncertain.
Length = 474
Score = 29.0 bits (65), Expect = 7.1
Identities = 45/201 (22%), Positives = 88/201 (43%), Gaps = 21/201 (10%)
Query: 253 IVGAAKCFFGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYY 312
+V AA F + G + A ++ NP ++ P++IL++ + ++ + + IIP
Sbjct: 197 VVLAASIFLFYAGMEMNAVHVKDVDNPDKNYPIAILIAALGTVLIFVLGTLAIAFIIPRE 256
Query: 313 E----QDAEAPFPHIFDSLG--W--PVMKWLVTVGSLFALLTAMFGALFPLPRILYAMSL 364
+ Q F + F G W P++ + + +G L ++T + G + A++
Sbjct: 257 DISLTQSLLVAFDNAFHWAGLSWLGPILAFALAIGVLAGVVTWVAGP----SSGMLAVAK 312
Query: 365 DGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVF----KLDQLVDMLSIGTLLAYTIV 420
G L F + + P+ + G +VLS +F + +LS T++ Y ++
Sbjct: 313 AGYLPTFFQKTN-KNGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQLTVILYLVM 371
Query: 421 AL----SVLILRYSEDGADTP 437
L S + LRYS+ P
Sbjct: 372 YLLMFASAIYLRYSQPDRPRP 392
>gnl|CDD|163293 TIGR03498, FliI_clade3, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively.
Length = 418
Score = 28.8 bits (65), Expect = 7.9
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 44 LGIGATLGVGVYVLAGSVAKNQAGPSVVISFI 75
LGI A GVG L +A+N VVI+ +
Sbjct: 143 LGIFAGSGVGKSTLLSMLARNTDADVVVIALV 174
>gnl|CDD|224735 COG1822, COG1822, Predicted archaeal membrane protein [Function
unknown].
Length = 349
Score = 28.9 bits (65), Expect = 8.1
Identities = 35/186 (18%), Positives = 68/186 (36%), Gaps = 14/186 (7%)
Query: 248 GLNGIIVGAAKCFFGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTL 307
+ +I+G FF + GF G+ + + I LL + L I +++
Sbjct: 28 TILSLIIGPFALFFIY-GFTGPFVAGKGIRLLRFIIDDIFLLLSLLSIFFILGIQLLIIG 86
Query: 308 IIPYYEQDAEAPFPHIFDSLGWPVMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGL 367
IP A P + L + + L + + L P+ L + +
Sbjct: 87 AIPLIPL---AIRPLLNPKLKKLKYVLIFSSYLLPLIPIVVISGLIPILNYLTRFIILSI 143
Query: 368 LYDCFSYVSPRTKTPVLSSLLTGALTAVL-----SAVFKLDQLVDMLSIGTLLAYTIVAL 422
L Y +TP+L+S+L+G + L +L+ LSI L+ +
Sbjct: 144 LLALIGY-----RTPLLASILSGVFIIITYLGLFLGWLILYRLIIALSILPLIYGYRSVI 198
Query: 423 SVLILR 428
++++
Sbjct: 199 ALIVFG 204
>gnl|CDD|235385 PRK05277, PRK05277, chloride channel protein; Provisional.
Length = 438
Score = 29.1 bits (66), Expect = 8.1
Identities = 41/146 (28%), Positives = 59/146 (40%), Gaps = 30/146 (20%)
Query: 164 RYSFLSTYPDFIA---AGIVMLM----SALISWGVSESTRLNSVFTFLNLGTVVVIVG-- 214
RYS +S FI A IV + A+I G + LN+++ FL LG + I G
Sbjct: 174 RYSLISIKAVFIGVIMATIVFRLFNGEQAVIEVGKFSAPPLNTLWLFLLLGIIFGIFGVL 233
Query: 215 --SGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFV--GFDCI- 269
L + + + R V GG G GL G++ AA V GF+ I
Sbjct: 234 FNKLLLRTQDLFDRLHGGNKKRWVLMGGAVGGL-CGLLGLLAPAA------VGGGFNLIP 286
Query: 270 -ATTGEESKNPKRDIPLSILLSLFIV 294
A G S + +LL +F+
Sbjct: 287 IALAGNFS--------IGMLLFIFVA 304
>gnl|CDD|226133 COG3605, PtsP, Signal transduction protein containing GAF and PtsI
domains [Signal transduction mechanisms].
Length = 756
Score = 28.9 bits (65), Expect = 8.4
Identities = 33/121 (27%), Positives = 48/121 (39%), Gaps = 25/121 (20%)
Query: 309 IPYYEQDAEAPFPHIFDSLGWPVMKWLVTVGSLF-----ALLTAMFGALFPLPRILYAM- 362
+PY E P LGW ++ + +F A+L A L RIL M
Sbjct: 516 LPYMPISEENPA------LGWRGIRLTLDRPEIFRIQVRAMLRAS-AGTGNL-RILLPMV 567
Query: 363 -SLD------GLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVFKLDQL---VDMLSIG 412
+D L+ VS + GA+ V S +F+LD+L VD +S+G
Sbjct: 568 TEVDEVDEARRLIERAVREVSEMGG-YLPPKPRIGAMLEVPSLLFQLDELAKRVDFVSVG 626
Query: 413 T 413
T
Sbjct: 627 T 627
>gnl|CDD|233237 TIGR01026, fliI_yscN, ATPase FliI/YscN family. This family of
ATPases demonstrates extensive homology with ATP
synthase F1, beta subunit. It is a mixture of members
with two different protein functions. The first group is
exemplified by Salmonella typhimurium FliI protein. It
is needed for flagellar assembly, its ATPase activity is
required for flagellation, and it may be involved in a
specialized protein export pathway that proceeds without
signal peptide cleavage. The second group of proteins
function in the export of virulence proteins;
exemplified by Yersinia sp. YscN protein an ATPase
involved in the type III secretory pathway for the
antihost Yops proteins [Energy metabolism, ATP-proton
motive force interconversion].
Length = 440
Score = 28.9 bits (65), Expect = 9.0
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 44 LGIGATLGVGVYVLAGSVAKNQAGPSVVISFI 75
+GI A GVG L G +A+N VI+ I
Sbjct: 166 IGIFAGSGVGKSTLLGMIARNTEADVNVIALI 197
>gnl|CDD|221267 pfam11852, DUF3372, Domain of unknown function (DUF3372). This
domain is functionally uncharacterized. This domain is
found in bacteria and eukaryotes. This presumed domain
is about 170 amino acids in length.
Length = 168
Score = 28.0 bits (63), Expect = 9.2
Identities = 28/84 (33%), Positives = 33/84 (39%), Gaps = 17/84 (20%)
Query: 129 AFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALIS 188
AF E RIR ++ LFRL T+ R F +T PD IVM I
Sbjct: 45 AFFQELLRIRSSSPLFRL---------GTAADIQQRVDFHNTGPDQTPGLIVM----SID 91
Query: 189 WGVSESTRLNSVFTFLNLGTVVVI 212
GV L+ F L VVV
Sbjct: 92 DGVGAGADLDPNFDAL----VVVF 111
>gnl|CDD|119323 cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of
Escherichia coli LivM and related proteins. LivM is one
of two TMs of the E. coli LIV-1/LS transporter, a
Periplasmic Binding Protein (PBP)-dependent ATP-Binding
Cassette (ABC) transporter involved in the uptake of
branched-chain amino acids (AAs). These types of
transporters generally bind type 1 PBPs. PBP-dependent
ABC transporters consist of a PBP, two TMs, and two
cytoplasmic ABCs, and are mainly involved in importing
solutes from the environment. The solute is captured by
the PBP, which delivers it to a gated translocation
pathway formed by the two TMs. The two ABCs bind and
hydrolyze ATP and drive the transport reaction. E. coli
LivM forms a heterodimer with another TM, LivH, to
generate the transmembrane pore. LivH is not included
in this subgroup. The LIV-1/LS transporter is comprised
of two TMs (LivM and LivH), two ABCs (LivG and LivF),
and one of two alternative PBPs, LivJ (LIV-BP) or LivK
(LS-BP). In addition to transporting branched-chain AAs
including leucine, isoleucine and valine, the E. coli
LIV-1/LS transporter is involved in the uptake of the
aromatic AA, phenylalanine.
Length = 268
Score = 28.6 bits (65), Expect = 9.6
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 35 VLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGL 86
+LG LG A G+G Y A + + G ++ + A L +AL GL
Sbjct: 14 LLGYAGQLSLGHAAFFGIGAYTAA--LLATRLGLPFWLALLAAGLVAALVGL 63
>gnl|CDD|223964 COG1033, COG1033, Predicted exporters of the RND superfamily
[General function prediction only].
Length = 727
Score = 28.8 bits (65), Expect = 9.9
Identities = 22/125 (17%), Positives = 41/125 (32%), Gaps = 18/125 (14%)
Query: 465 VNALPEETLDPNSQSALTGGPVPTSDCTSALQYATFTLLGLVYTVVFVCLARQNQNRARL 524
+ + LTG P +Q LL L ++ + L
Sbjct: 164 ERIIEIAKFPSGVKLYLTGDPAIRYQILREIQKDMVVLLALAVILMVIVL--------YY 215
Query: 525 KFKVPWVPLVPCLSIFM--------NIYLMINLDISTWVRFVIWLVIG--FGIYFTYGIS 574
F+ L+P + + + L I L I+T + + IG +G++F
Sbjct: 216 VFRSVRRALLPLIIVLVSVLWTLGAMGLLGIPLTITTSAVPPLLIGIGIDYGVHFHNRYE 275
Query: 575 HSKQK 579
++K
Sbjct: 276 EERRK 280
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.139 0.414
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 30,180,874
Number of extensions: 3069595
Number of successful extensions: 5496
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5340
Number of HSP's successfully gapped: 279
Length of query: 584
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 482
Effective length of database: 6,413,494
Effective search space: 3091304108
Effective search space used: 3091304108
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 62 (27.6 bits)