RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6067
         (584 letters)



>d1ei6a_ c.76.1.4 (A:) Phosphonoacetate hydrolase {Pseudomonas
           fluorescens [TaxId: 294]}
          Length = 406

 Score = 29.1 bits (63), Expect = 1.5
 Identities = 6/39 (15%), Positives = 12/39 (30%)

Query: 362 MSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVF 400
           + +DG   +  +      + P L+ L           V 
Sbjct: 21  ICVDGCEQEYINQAIQAGQAPFLAELTGFGTVLTGDCVV 59


>d3bnea1 a.119.1.1 (A:150-839) Lipoxigenase, C-terminal domain
           {Soybean (Glycine max), isozyme L1 [TaxId: 3847]}
          Length = 690

 Score = 29.1 bits (65), Expect = 1.8
 Identities = 24/125 (19%), Positives = 41/125 (32%), Gaps = 16/125 (12%)

Query: 377 PRTKTPVLSSLLTGALTAVLSAVFKLDQLVDMLSIGTLL---AYTIVALSVLILRYSEDG 433
           P   TP    ++     A L  +      +  LS+  +L   A   V L      +    
Sbjct: 567 PEKGTPEYEEMINNHEKAYLRTITSKLPTLISLSVIEILSTHASDEVYLGQRDNPHWT-- 624

Query: 434 ADTPIKGTSCAEKETKSSSFAEKDINAKNFSVNA---------LPEETLDPNSQSALTGG 484
           +D+        +K        E+ +  +N   +          LP   L P+S+  LT  
Sbjct: 625 SDSKAL--QAFQKFGNKLKEIEEKLVRRNNDPSLQGNRLGPVQLPYTLLYPSSEEGLTFR 682

Query: 485 PVPTS 489
            +P S
Sbjct: 683 GIPNS 687


>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter
           MsbA, N-terminal domain {Salmonella typhimurium [TaxId:
           90371]}
          Length = 319

 Score = 26.8 bits (57), Expect = 8.5
 Identities = 8/49 (16%), Positives = 21/49 (42%)

Query: 307 LIIPYYEQDAEAPFPHIFDSLGWPVMKWLVTVGSLFALLTAMFGALFPL 355
           +  P  +  A      +  +  +P +   +T G++  + ++M   + PL
Sbjct: 241 ISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPL 289


>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction
           centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
          Length = 38

 Score = 23.7 bits (51), Expect = 9.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 286 SILLSLFIVFVCYLAIAIVLTLIIPYYEQDA 316
           S L  +FI  VC+L   +V+ L+  Y E +A
Sbjct: 8   SFLPWIFIPVVCWLMPTVVMGLLFLYIEGEA 38


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.139    0.414 

Gapped
Lambda     K      H
   0.267   0.0582    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,098,704
Number of extensions: 96297
Number of successful extensions: 240
Number of sequences better than 10.0: 1
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 11
Length of query: 584
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 494
Effective length of database: 1,171,896
Effective search space: 578916624
Effective search space used: 578916624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.3 bits)