BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6068
         (329 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
           Carboxyatractyloside
 pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
          Length = 297

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/315 (20%), Positives = 124/315 (39%), Gaps = 52/315 (16%)

Query: 32  LSMLSSFCVRG--------SLYPLTLIKTRLQLQ------KHDQLYKGLLDAGAKIYKSE 77
           LS L  F   G        ++ P+  +K  LQ+Q        ++ YKG++D   +I K +
Sbjct: 5   LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQ 64

Query: 78  GLGGLYRGFWVSSVQIF-SGVMYIATYEGVRHVITKNNIHNNQ-----AKSLIAGAAASL 131
           G    +RG   + ++ F +  +  A  +  + +       + Q     A +L +G AA  
Sbjct: 65  GFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGA 124

Query: 132 VGQTIIVPFDVISQHLMVLGLATANQSKKKIVLEPLGITIDTSQTKFRTTMNIAQFIYKQ 191
                + P D     L       A+  K              +Q +F    N    I+K 
Sbjct: 125 TSLCFVYPLDFARTRL------AADVGK------------GAAQREFTGLGNCITKIFKS 166

Query: 192 DGFKGFYRGYLASLCAYVPNSAFWWTFYHIYQEKLNRVFPDDFS-HLLIQCISXXXXXXX 250
           DG +G Y+G+  S+   +   A ++  Y   +  L    PD  + H+++  +        
Sbjct: 167 DGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGML----PDPKNVHIIVSWMIAQTVTAV 222

Query: 251 XXXXXNPLDTIRARLQVQRT--------NSMLQTCKLLWIEEGFWMFSKGLSARLVQSVM 302
                 P DT+R R+ +Q             +   + +  +EG   F KG  + +++ + 
Sbjct: 223 AGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMG 282

Query: 303 FSFSIILGYETIKRF 317
            +F ++L Y+ IK+F
Sbjct: 283 GAFVLVL-YDEIKKF 296



 Score = 36.6 bits (83), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 4/70 (5%)

Query: 45  YPLTLIKTRLQLQK----HDQLYKGLLDAGAKIYKSEGLGGLYRGFWVSSVQIFSGVMYI 100
           YP   ++ R+ +Q      D +Y G +D   KI K EG    ++G W + ++   G   +
Sbjct: 228 YPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVL 287

Query: 101 ATYEGVRHVI 110
             Y+ ++  +
Sbjct: 288 VLYDEIKKFV 297


>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
           Determined By Nmr Molecular Fragment Replacement
          Length = 303

 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/291 (19%), Positives = 109/291 (37%), Gaps = 45/291 (15%)

Query: 45  YPLTLIKTRLQLQKHDQ---------LYKGLLDAGAKIYKSEGLGGLYRGFWVS-SVQIF 94
           +PL   K RLQ+Q   Q          Y+G+L     + ++EG   LY G       Q+ 
Sbjct: 20  FPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMS 79

Query: 95  SGVMYIATYEGVRHVITKNNIHNNQAKSLIAGAAASLVGQTIIVPFDVISQHLMVLGLAT 154
              + I  Y+ V+   TK + H      L+AG+    +   +  P DV+         A 
Sbjct: 80  FASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAG 139

Query: 155 ANQSKKKIVLEPLGITIDTSQTKFRTTMNIAQFIYKQDGFKGFYRGYLASLCAYVPNSAF 214
             +                   ++++T+   + I +++G +G ++G   ++      +  
Sbjct: 140 GGR-------------------RYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCA 180

Query: 215 WWTFYHIYQEKLNR--VFPDDFSHLLIQCISXXXXXXXXXXXXNPLDTIRARLQVQRTNS 272
               Y + ++ L +  +  DD   L     S            +P+D ++ R      NS
Sbjct: 181 ELVTYDLIKDTLLKANLMTDD---LPCHFTSAFGAGFCTTVIASPVDVVKTRYM----NS 233

Query: 273 MLQT------CKLLWI-EEGFWMFSKGLSARLVQSVMFSFSIILGYETIKR 316
            L        C L  + +EG   F KG     ++   ++  + + YE +KR
Sbjct: 234 ALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKR 284


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.137    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,657,163
Number of Sequences: 62578
Number of extensions: 319050
Number of successful extensions: 765
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 755
Number of HSP's gapped (non-prelim): 8
length of query: 329
length of database: 14,973,337
effective HSP length: 99
effective length of query: 230
effective length of database: 8,778,115
effective search space: 2018966450
effective search space used: 2018966450
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)