Query psy6068
Match_columns 329
No_of_seqs 165 out of 2006
Neff 9.6
Searched_HMMs 29240
Date Fri Aug 16 16:48:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6068.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6068hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 5E-57 1.7E-61 403.8 20.5 277 28-324 3-292 (303)
2 1okc_A ADP, ATP carrier protei 100.0 7.7E-56 2.6E-60 395.1 20.6 272 25-318 6-297 (297)
3 1okc_A ADP, ATP carrier protei 100.0 1.7E-35 5.8E-40 263.6 17.6 189 117-321 5-204 (297)
4 2lck_A Mitochondrial uncouplin 100.0 5.8E-35 2E-39 260.8 13.1 186 121-321 3-195 (303)
5 3tgu_G UQCRQ, mitochondrial ub 27.7 52 0.0018 22.1 3.0 35 285-319 33-67 (81)
6 1pp9_G Ubiquinol-cytochrome C 20.7 76 0.0026 21.3 2.8 37 284-320 32-68 (81)
7 2acm_A Mucin-1; auto-catalytic 15.4 41 0.0014 21.0 0.4 20 64-83 40-59 (66)
8 2a3d_A Protein (de novo three- 11.9 2.8E+02 0.0096 16.9 3.6 14 256-269 9-22 (73)
9 3cx5_H Cytochrome B-C1 complex 9.3 2E+02 0.0068 19.8 2.4 35 284-318 42-76 (93)
10 1y9i_A Low temperature require 9.2 2.3E+02 0.0079 22.1 3.0 43 210-252 111-157 (178)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=5e-57 Score=403.76 Aligned_cols=277 Identities=21% Similarity=0.307 Sum_probs=250.1
Q ss_pred hhhHhhhHhhHhhhcccchHHHHHHHHhcccC---------CCccccHHHHHHHHHhhccccccccccccchh-hhhhhh
Q psy6068 28 QFFPLSMLSSFCVRGSLYPLTLIKTRLQLQKH---------DQLYKGLLDAGAKIYKSEGLGGLYRGFWVSSV-QIFSGV 97 (329)
Q Consensus 28 ~~~~~g~~a~~~~~~~~~Pld~vk~~~Q~~~~---------~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~-~~~~~~ 97 (329)
.++++|++|++++.++++|+|++|+|+|++.. ...|+++++++++|+++||++|||||+.++++ .++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 57899999999999999999999999999864 24688999999999999999999999999999 566789
Q ss_pred HHHHHHHHHHHHHhhcCCCCchhHHHHhhhhHHhhhhhccccHHHHHHHHHHhcccccccccccccccCCccccccCccc
Q psy6068 98 MYIATYEGVRHVITKNNIHNNQAKSLIAGAAASLVGQTIIVPFDVISQHLMVLGLATANQSKKKIVLEPLGITIDTSQTK 177 (329)
Q Consensus 98 ~~~~~y~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~ik~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (329)
++|.+||.+|+.+.+.....+....+++|++||+++.++++|+|+||+|+|++... ....+
T Consensus 83 i~f~~ye~~k~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~-------------------~~~~~ 143 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA-------------------GGGRR 143 (303)
T ss_dssp HTTTHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC-------------------CCSSS
T ss_pred HHHHHHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc-------------------CCCCC
Confidence 99999999999887653346778899999999999999999999999999997542 12457
Q ss_pred cCcHHHHHHHHHHHhCccccccccchhhcccccchhHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHhhhhhhcccc
Q psy6068 178 FRTTMNIAQFIYKQDGFKGFYRGYLASLCAYVPNSAFWWTFYHIYQEKLNRVFPDDFSHLLIQCISGTLGGFTTTLITNP 257 (329)
Q Consensus 178 y~~~~~~~~~i~~~~G~~glyrG~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~~~~~~P 257 (329)
|++.++++++|+++||++|||||+.+++++.+|..+++|.+||.+|+.+.+.... ..+....+++|++||++++++++|
T Consensus 144 ~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~-~~~~~~~~~~g~~ag~~~~~~~~P 222 (303)
T 2lck_A 144 YQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLM-TDDLPCHFTSAFGAGFCTTVIASP 222 (303)
T ss_dssp CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSC-CSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCchHHHHHHHHHHHHHHHHHcCH
Confidence 8999999999999999999999999999999999999999999999988764322 235677899999999999999999
Q ss_pred HHHHHHHHhhcC---CccHHHHHHHHHHhhchhhhccchhHhHHHHhhhhhHHHHHHHHHHhhhchhhhh
Q psy6068 258 LDTIRARLQVQR---TNSMLQTCKLLWIEEGFWMFSKGLSARLVQSVMFSFSIILGYETIKRFSIKSEYK 324 (329)
Q Consensus 258 ldvvk~r~q~~~---~~~~~~~~~~i~~~eG~~~lyrG~~~~l~~~~~~~~~~~~~ye~~~~~~~~~~~~ 324 (329)
+||||+|||.+. |.++++|+++|+++||++|||||+.++++|.+|..+++|.+||.+|+++.+...+
T Consensus 223 ~dvvktrlq~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~~~~~ 292 (303)
T 2lck_A 223 VDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQS 292 (303)
T ss_dssp HHHHHHHHTTCCSSSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHhccccccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999985 8899999999999999999999999999999999999999999999998765443
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=7.7e-56 Score=395.12 Aligned_cols=272 Identities=21% Similarity=0.320 Sum_probs=236.2
Q ss_pred CcchhhHhhhHhhHhhhcccchHHHHHHHHhcccC------CCccccHHHHHHHHHhhccccccccccccchh-hhhhhh
Q psy6068 25 DKTQFFPLSMLSSFCVRGSLYPLTLIKTRLQLQKH------DQLYKGLLDAGAKIYKSEGLGGLYRGFWVSSV-QIFSGV 97 (329)
Q Consensus 25 ~~~~~~~~g~~a~~~~~~~~~Pld~vk~~~Q~~~~------~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~-~~~~~~ 97 (329)
+.+.++++|++|++++.++++|+|++|+|+|++.. ...|+++++++++|+++||++|||||+.++++ .++.++
T Consensus 6 ~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 85 (297)
T 1okc_A 6 SFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQA 85 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHH
Confidence 35678999999999999999999999999999853 24688999999999999999999999999999 566789
Q ss_pred HHHHHHHHHHHHHhhc-CCCC----chhHHHHhhhhHHhhhhhccccHHHHHHHHHHhcccccccccccccccCCccccc
Q psy6068 98 MYIATYEGVRHVITKN-NIHN----NQAKSLIAGAAASLVGQTIIVPFDVISQHLMVLGLATANQSKKKIVLEPLGITID 172 (329)
Q Consensus 98 ~~~~~y~~~~~~~~~~-~~~~----~~~~~~~ag~~ag~~~~~~~~Pld~ik~r~q~~~~~~~~~~~~~~~~~~~~~~~~ 172 (329)
++|.+||.+++.+... +.+. .....+++|++||+++.++++|+|+||+|+|++....
T Consensus 86 ~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~------------------ 147 (297)
T 1okc_A 86 LNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKG------------------ 147 (297)
T ss_dssp HHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS------------------
T ss_pred HHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCC------------------
Confidence 9999999999954332 2211 3467899999999999999999999999999975422
Q ss_pred cCccccCcHHHHHHHHHHHhCccccccccchhhcccccchhHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHhhhhh
Q psy6068 173 TSQTKFRTTMNIAQFIYKQDGFKGFYRGYLASLCAYVPNSAFWWTFYHIYQEKLNRVFPDDFSHLLIQCISGTLGGFTTT 252 (329)
Q Consensus 173 ~~~~~y~~~~~~~~~i~~~~G~~glyrG~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~~ 252 (329)
....+|+++++++++|+++||++|||||+.+++++.+|.++++|.+||.+|+.+.+.. ..+.+..+++|++||++++
T Consensus 148 ~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~---~~~~~~~~~~g~~ag~~a~ 224 (297)
T 1okc_A 148 AAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK---NVHIIVSWMIAQTVTAVAG 224 (297)
T ss_dssp TTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG---CSCHHHHHHHHHHHHHHHH
T ss_pred CcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC---CccHHHHHHHHHHHHHHHH
Confidence 2346789999999999999999999999999999999999999999999999775432 2346778899999999999
Q ss_pred hccccHHHHHHHHhhcC--------CccHHHHHHHHHHhhchhhhccchhHhHHHHhhhhhHHHHHHHHHHhhh
Q psy6068 253 LITNPLDTIRARLQVQR--------TNSMLQTCKLLWIEEGFWMFSKGLSARLVQSVMFSFSIILGYETIKRFS 318 (329)
Q Consensus 253 ~~~~Pldvvk~r~q~~~--------~~~~~~~~~~i~~~eG~~~lyrG~~~~l~~~~~~~~~~~~~ye~~~~~~ 318 (329)
++++|+||||+|||.+. |.++++|+++|+++||++|||||+.++++|. +..+++|.+||.+|+++
T Consensus 225 ~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 225 LVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred HhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 99999999999999874 7899999999999999999999999999996 46789999999998753
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.7e-35 Score=263.60 Aligned_cols=189 Identities=20% Similarity=0.313 Sum_probs=165.4
Q ss_pred CchhHHHHhhhhHHhhhhhccccHHHHHHHHHHhcccccccccccccccCCccccccCccccCcHHHHHHHHHHHhCccc
Q psy6068 117 NNQAKSLIAGAAASLVGQTIIVPFDVISQHLMVLGLATANQSKKKIVLEPLGITIDTSQTKFRTTMNIAQFIYKQDGFKG 196 (329)
Q Consensus 117 ~~~~~~~~ag~~ag~~~~~~~~Pld~ik~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~i~~~~G~~g 196 (329)
.+.+..+++|++||+++.++++|+|+||+|+|++..... ......|++.++++++|+++||++|
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~----------------~~~~~~~~~~~~~~~~i~~~eG~~g 68 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQ----------------ISAEKQYKGIIDCVVRIPKEQGFLS 68 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSS----------------CCGGGSCCSHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccc----------------cccccccccHHHHHHHHHhccchhh
Confidence 456778999999999999999999999999999754210 0124578999999999999999999
Q ss_pred cccccchhhcccccchhHHHHHHHHHHHHhhc-cCCCCc--hhHHHHHHHHHHHhhhhhhccccHHHHHHHHhhcC----
Q psy6068 197 FYRGYLASLCAYVPNSAFWWTFYHIYQEKLNR-VFPDDF--SHLLIQCISGTLGGFTTTLITNPLDTIRARLQVQR---- 269 (329)
Q Consensus 197 lyrG~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~ag~~~~~~~~Pldvvk~r~q~~~---- 269 (329)
||||+.+++++.+|..+++|.+||.+|+.+.. ....+. ...+..+++|++||++++++++|+|+||+|||++.
T Consensus 69 lyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~ 148 (297)
T 1okc_A 69 FWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGA 148 (297)
T ss_dssp GGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSST
T ss_pred eecccHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCC
Confidence 99999999999999999999999999995433 222222 24577899999999999999999999999999873
Q ss_pred ----CccHHHHHHHHHHhhchhhhccchhHhHHHHhhhhhHHHHHHHHHHhhhchh
Q psy6068 270 ----TNSMLQTCKLLWIEEGFWMFSKGLSARLVQSVMFSFSIILGYETIKRFSIKS 321 (329)
Q Consensus 270 ----~~~~~~~~~~i~~~eG~~~lyrG~~~~l~~~~~~~~~~~~~ye~~~~~~~~~ 321 (329)
|.++++|+++|+++||++|||||+.+++++.+|..++.|.+||.+|+.+.+.
T Consensus 149 ~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~ 204 (297)
T 1okc_A 149 AQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP 204 (297)
T ss_dssp TTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG
T ss_pred cCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 6899999999999999999999999999999999999999999999987643
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=5.8e-35 Score=260.78 Aligned_cols=186 Identities=17% Similarity=0.298 Sum_probs=164.6
Q ss_pred HHHHhhhhHHhhhhhccccHHHHHHHHHHhcccccccccccccccCCccccccCccccCcHHHHHHHHHHHhCccccccc
Q psy6068 121 KSLIAGAAASLVGQTIIVPFDVISQHLMVLGLATANQSKKKIVLEPLGITIDTSQTKFRTTMNIAQFIYKQDGFKGFYRG 200 (329)
Q Consensus 121 ~~~~ag~~ag~~~~~~~~Pld~ik~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~i~~~~G~~glyrG 200 (329)
..+++|++||+++.++++|+|+||+|+|++....... ......+|++.++++++|+++||+++||||
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~-------------~~~~~~~~~~~~~~~~~i~~~eG~~glyrG 69 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLV-------------RTAASAQYRGVLGTILTMVRTEGPRSLYNG 69 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHH-------------HHCSCSSCSCHHHHHHHHHHHHCHHHHHSS
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhcccccc-------------ccccCCCCCCHHHHHHHHHHhhCHHHHHcC
Confidence 3678999999999999999999999999875421000 001245789999999999999999999999
Q ss_pred cchhhcccccchhHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHhhhhhhccccHHHHHHHHhhcC-------CccH
Q psy6068 201 YLASLCAYVPNSAFWWTFYHIYQEKLNRVFPDDFSHLLIQCISGTLGGFTTTLITNPLDTIRARLQVQR-------TNSM 273 (329)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~~~~~~Pldvvk~r~q~~~-------~~~~ 273 (329)
+.+.+++.+|..+++|.+||.+|+.+.+... ..+.+..+++|++||+++.++++|+|+||+|+|++. |.++
T Consensus 70 ~~~~l~~~~~~~~i~f~~ye~~k~~~~~~~~--~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~ 147 (303)
T 2lck_A 70 LVAGLQRQMSFASVRIGLYDSVKQFYTKGSE--HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQST 147 (303)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHHHHSCCCS--SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCH
Confidence 9999999999999999999999999876422 356788999999999999999999999999999974 6899
Q ss_pred HHHHHHHHHhhchhhhccchhHhHHHHhhhhhHHHHHHHHHHhhhchh
Q psy6068 274 LQTCKLLWIEEGFWMFSKGLSARLVQSVMFSFSIILGYETIKRFSIKS 321 (329)
Q Consensus 274 ~~~~~~i~~~eG~~~lyrG~~~~l~~~~~~~~~~~~~ye~~~~~~~~~ 321 (329)
++|+++|+++||++|||||+.+++++.+|..++.|.+||.+|+.+.+.
T Consensus 148 ~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~ 195 (303)
T 2lck_A 148 VEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKA 195 (303)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999998754
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=27.70 E-value=52 Score=22.09 Aligned_cols=35 Identities=9% Similarity=-0.123 Sum_probs=27.3
Q ss_pred chhhhccchhHhHHHHhhhhhHHHHHHHHHHhhhc
Q psy6068 285 GFWMFSKGLSARLVQSVMFSFSIILGYETIKRFSI 319 (329)
Q Consensus 285 G~~~lyrG~~~~l~~~~~~~~~~~~~ye~~~~~~~ 319 (329)
|+...+|-+.-.++.++|..++.+.+|+..++...
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne 67 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFE 67 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 55566666777888999999999999988776553
No 6
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=20.74 E-value=76 Score=21.26 Aligned_cols=37 Identities=14% Similarity=-0.056 Sum_probs=28.9
Q ss_pred hchhhhccchhHhHHHHhhhhhHHHHHHHHHHhhhch
Q psy6068 284 EGFWMFSKGLSARLVQSVMFSFSIILGYETIKRFSIK 320 (329)
Q Consensus 284 eG~~~lyrG~~~~l~~~~~~~~~~~~~ye~~~~~~~~ 320 (329)
.|+...+|-+.-+++.++|..++.+.+|+..++....
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~ 68 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEK 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHH
Confidence 3666677777778889999999999999887765533
No 7
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=15.38 E-value=41 Score=20.97 Aligned_cols=20 Identities=30% Similarity=0.466 Sum_probs=17.2
Q ss_pred ccHHHHHHHHHhhccccccc
Q psy6068 64 KGLLDAGAKIYKSEGLGGLY 83 (329)
Q Consensus 64 ~~~~~~~~~i~~~~G~~gly 83 (329)
+++.+.+.+||+++++.|++
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 46788899999999999886
No 8
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=11.89 E-value=2.8e+02 Score=16.87 Aligned_cols=14 Identities=36% Similarity=0.484 Sum_probs=11.1
Q ss_pred ccHHHHHHHHhhcC
Q psy6068 256 NPLDTIRARLQVQR 269 (329)
Q Consensus 256 ~Pldvvk~r~q~~~ 269 (329)
+-+..||+|+|..+
T Consensus 9 qrlaaiktrlqalg 22 (73)
T 2a3d_A 9 QRLAAIKTRLQALG 22 (73)
T ss_dssp HHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhc
Confidence 44567999999887
No 9
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=9.34 E-value=2e+02 Score=19.76 Aligned_cols=35 Identities=0% Similarity=0.016 Sum_probs=27.5
Q ss_pred hchhhhccchhHhHHHHhhhhhHHHHHHHHHHhhh
Q psy6068 284 EGFWMFSKGLSARLVQSVMFSFSIILGYETIKRFS 318 (329)
Q Consensus 284 eG~~~lyrG~~~~l~~~~~~~~~~~~~ye~~~~~~ 318 (329)
.|+...+|-+.-+++.++|..++.+.+|+..++..
T Consensus 42 ~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~ 76 (93)
T 3cx5_H 42 NAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYN 76 (93)
T ss_dssp TTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHhcceEEechHhHHHHHHHHHHHHH
Confidence 46667777777788899999999999997766543
No 10
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=9.22 E-value=2.3e+02 Score=22.06 Aligned_cols=43 Identities=2% Similarity=-0.049 Sum_probs=27.3
Q ss_pred cchhHHHHHHHHHHHHhhccCC----CCchhHHHHHHHHHHHhhhhh
Q psy6068 210 PNSAFWWTFYHIYQEKLNRVFP----DDFSHLLIQCISGTLGGFTTT 252 (329)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ag~~~~ 252 (329)
....+.|-.||..|.+.-.... ..-.-++..+++|.+|++++.
T Consensus 111 ~~gf~~Fr~fDi~KPgpI~~ld~~~~gg~gimlDDivAgi~A~~~~~ 157 (178)
T 1y9i_A 111 SIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASR 157 (178)
T ss_dssp GGGHHHHHHHHHHCCTHHHHTTCCCSSCCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHhhhcccCCCCcchHHHHHHHHHHHHHHH
Confidence 3566778888888865443322 122357778888888777553
Done!