RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6068
(329 letters)
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein.
Length = 96
Score = 70.0 bits (172), Expect = 3e-15
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 34 MLSSFCVRGSLYPLTLIKTRLQLQ--KHDQLYKGLLDAGAKIYKSEGLGGLYRGFWVSSV 91
+++ YPL ++KTRLQ + YKG+LD KIYK EG+ GLY+G + +
Sbjct: 17 AIAATVT----YPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGIRGLYKGLLPNLL 72
Query: 92 QIFSGVM-YIATYEGVRHVITKNN 114
++ Y TYE ++ ++ K
Sbjct: 73 RVAPAAAIYFGTYETLKKLLLKKL 96
Score = 63.4 bits (155), Expect = 7e-13
Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 24/115 (20%)
Query: 120 AKSLIAGAAASLVGQTIIVPFDVISQHLMVLGLATANQSKKKIVLEPLGITIDTSQTKFR 179
SL+AG A + T+ P DV+ L K++
Sbjct: 6 LASLLAGGIAGAIAATVTYPLDVVKTRLQSSA--------------------AGGSRKYK 45
Query: 180 TTMNIAQFIYKQDGFKGFYRGYLASLCAYVPNSAFWWTFYHIYQEKLNRVFPDDF 234
++ + IYK++G +G Y+G L +L P +A ++ Y E L ++
Sbjct: 46 GILDCFKKIYKEEGIRGLYKGLLPNLLRVAPAAAIYFGTY----ETLKKLLLKKL 96
Score = 58.0 bits (141), Expect = 5e-11
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 235 SHLLIQCISGTLGGFTTTLITNPLDTIRARLQVQ------RTNSMLQTCKLLWIEEGFWM 288
L ++G + G +T PLD ++ RLQ + +L K ++ EEG
Sbjct: 3 LSFLASLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGIRG 62
Query: 289 FSKGLSARLVQSVMFSFSIILGYETIKRF 317
KGL L++ + YET+K+
Sbjct: 63 LYKGLLPNLLRVAPAAAIYFGTYETLKKL 91
>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase;
Provisional.
Length = 300
Score = 65.2 bits (159), Expect = 6e-12
Identities = 51/193 (26%), Positives = 86/193 (44%), Gaps = 33/193 (17%)
Query: 25 DKTQFFPLSMLSSFCVRGS----LYPLTLIKTRLQL---QKHDQLYKGLLDAGAKIYKSE 77
D +FF +++LS S +YPL +TRL + D+ + GL D KI K
Sbjct: 108 DFWKFFGVNILSGGLAGASSLLIVYPLDFARTRLASDIGKGGDREFTGLFDCLMKISKQT 167
Query: 78 GLGGLYRGFWVSSVQIFSGVMYIATYEGV----RHVITKNNIHNNQA-KSLIAGAAASLV 132
G LY+GF VS I +Y Y G+ + ++ N+ + N K +A L
Sbjct: 168 GFLSLYQGFGVSVQGII---VYRGAYFGLYDSAKALLFGNDKNTNILYKWAVAQTVTILA 224
Query: 133 GQTIIVPFDVISQHLMVLGLATANQSKKKIVLEPLGITIDTSQTKFRTTMNIAQFIYKQD 192
G I PFD + + +M++ +K S+ ++ T++ + I K +
Sbjct: 225 G-LISYPFDTVRRRMMMMS------GRKA-----------KSEIQYTGTLDCWKKILKNE 266
Query: 193 GFKGFYRGYLASL 205
G GF++G A++
Sbjct: 267 GLGGFFKGAWANV 279
Score = 39.4 bits (92), Expect = 0.002
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 45 YPLTLIKTRLQL-----QKHDQLYKGLLDAGAKIYKSEGLGGLYRGFWVSSVQIFSGVMY 99
YP ++ R+ + K + Y G LD KI K+EGLGG ++G W + ++ G +
Sbjct: 229 YPFDTVRRRMMMMSGRKAKSEIQYTGTLDCWKKILKNEGLGGFFKGAWANVLRGAGGALV 288
Query: 100 IATYE 104
+ Y+
Sbjct: 289 LVFYD 293
Score = 38.6 bits (90), Expect = 0.002
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 190 KQDGFKGFYRGYLASLCAYVPNSAFWWTFYHIYQEKLNRVFP-----DDFSHLL-IQCIS 243
K+ G +RG A++ Y P AF + F ++ +FP DF + +S
Sbjct: 64 KEQGVLSLWRGNTANVIRYFPTQAFNFAF----KDYFKNMFPKYNQKTDFWKFFGVNILS 119
Query: 244 GTLGGFTTTLITNPLDTIRARL 265
G L G ++ LI PLD R RL
Sbjct: 120 GGLAGASSLLIVYPLDFARTRL 141
Score = 30.9 bits (70), Expect = 0.74
Identities = 53/274 (19%), Positives = 104/274 (37%), Gaps = 46/274 (16%)
Query: 63 YKGLLDAGAKIYKSEGLGGLYRGFWVSSVQIFSGVMY-IATYEGVRHVITKNNIHN---- 117
Y G+++ ++ K +G+ L+RG + ++ F + A + +++ K N
Sbjct: 52 YSGIVNCFRRVSKEQGVLSLWRGNTANVIRYFPTQAFNFAFKDYFKNMFPKYNQKTDFWK 111
Query: 118 ----NQAKSLIAGAAASLVGQTIIVPFDVISQHLMVLGLATANQSKKKIVLEPLGITIDT 173
N +AGA++ L I+ P D L A+ K
Sbjct: 112 FFGVNILSGGLAGASSLL----IVYPLDFARTRL-------ASDIGKG------------ 148
Query: 174 SQTKFRTTMNIAQFIYKQDGFKGFYRGYLASLCAYVPNSAFWWTFYHIYQEKLNRVFPDD 233
+F + I KQ GF Y+G+ S+ + ++ Y + L D
Sbjct: 149 GDREFTGLFDCLMKISKQTGFLSLYQGFGVSVQGIIVYRGAYFGLYDSAKALLFG--NDK 206
Query: 234 FSHLLIQCISGTLGGFTTTLITNPLDTIRARL----------QVQRTNSMLQTCKLLWIE 283
+++L + LI+ P DT+R R+ ++Q T + L K +
Sbjct: 207 NTNILYKWAVAQTVTILAGLISYPFDTVRRRMMMMSGRKAKSEIQYTGT-LDCWKKILKN 265
Query: 284 EGFWMFSKGLSARLVQSVMFSFSIILGYETIKRF 317
EG F KG A +++ + ++ Y+ +++
Sbjct: 266 EGLGGFFKGAWANVLRGAGGALVLVF-YDELQKL 298
>gnl|CDD|185494 PTZ00168, PTZ00168, mitochondrial carrier protein; Provisional.
Length = 259
Score = 50.7 bits (121), Expect = 3e-07
Identities = 62/304 (20%), Positives = 116/304 (38%), Gaps = 50/304 (16%)
Query: 24 MDKTQFFPLSMLSSFCVRGSLYPLTLIKTRLQLQKHDQLYKGLLDAGAKIYKSEGLGGLY 83
M+ LS V LYP+ IKT +Q +K + LY
Sbjct: 1 MEHFHNLVTGALSGVIVDAVLYPIDSIKTNIQAKKSFSFSD--------------IKKLY 46
Query: 84 RGFWVSSV-QIFSGVMYIATYEGVRHVITKNNIHNNQAK-SLIAGAAASLVGQTIIVPFD 141
G + V + + + YE + ++T+ + ++ LI+ + A + + +PF+
Sbjct: 47 SGILPTLVGTVPASAFFYCFYELSKKLLTEYRENISKTNLYLISTSIAEITACIVRLPFE 106
Query: 142 VISQHLMVLGLATANQSKKKIVLEPLGITIDTSQTKFRTTMNIAQFIYKQDGFKGFYRGY 201
++ Q++ V G + + +T I Q ++ + Y
Sbjct: 107 IVKQNMQVSG----------------------NISVLKTIYEITQ---REGLPSFLGKSY 141
Query: 202 LASLCAYVPNSAFWWTFYHIYQEKLNRVFPDDFSHL---LIQCISGTLGGFTTTLITNPL 258
+ +P + + +EK + F FS + I G L G +T P+
Sbjct: 142 FVMIVREIPFDCIQYFLWETLKEKAKKDF-GKFSKKYPSITSAICGGLAGGIAGFLTTPV 200
Query: 259 DTIRARLQVQRTNSMLQTCKLLWIEEGFWMFSKGLSARLVQSVMFSFSIILGYETIKRFS 318
D I++R Q+ S ++T + EEG+ F KG R S F ++ + +++ FS
Sbjct: 201 DVIKSR-QIIYGKSYIETVTEI-AEEGYLTFYKGCCFR---SSYLFFGGLIFFGSLRFFS 255
Query: 319 IKSE 322
K E
Sbjct: 256 FKKE 259
>gnl|CDD|225056 COG2145, ThiM, Hydroxyethylthiazole kinase, sugar kinase family
[Coenzyme metabolism].
Length = 265
Score = 28.8 bits (65), Expect = 3.3
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 147 LMVLGLATANQSKKKIVLEPLGITIDTSQTKFRT 180
M + AN+S K +VL+P+G+ TKFRT
Sbjct: 73 AMRAAIKAANESGKPVVLDPVGV----GATKFRT 102
>gnl|CDD|236095 PRK07777, PRK07777, aminotransferase; Validated.
Length = 387
Score = 27.7 bits (62), Expect = 8.4
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 58 KHDQLYKGLLDAGAKIYKSEG 78
K D+L GL +AG +++ S G
Sbjct: 294 KRDRLAAGLAEAGFEVHDSAG 314
>gnl|CDD|201239 pfam00455, DeoRC, DeoR C terminal sensor domain. The sensor
domains of the DeoR are catalytically inactive versions
of the ISOCOT fold, but retain the substrate binding
site. DeorC senses diverse sugar derivatives such as
deoxyribose nucleoside (DeoR), tagatose phosphate
(LacR), galactosamine (AgaR), myo-inositol (Bacillus
IolR) and L-ascorbate (UlaR).
Length = 162
Score = 27.1 bits (61), Expect = 9.1
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 117 NNQAKSLIAGAAASLV--GQTIIV 138
N + K IA AAASL+ G TI +
Sbjct: 3 NAEEKRRIARAAASLIEDGDTIFL 26
>gnl|CDD|236477 PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated.
Length = 263
Score = 27.5 bits (62), Expect = 9.9
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 146 HLMVLGLATANQSKKKIVLEPLGITIDTSQTKFRT 180
M+ AN++ K +VL+P+G+ T +RT
Sbjct: 71 EAMLAAGKIANEAGKPVVLDPVGV----GATSYRT 101
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.138 0.417
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,370,025
Number of extensions: 1537785
Number of successful extensions: 1763
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1753
Number of HSP's successfully gapped: 29
Length of query: 329
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 232
Effective length of database: 6,635,264
Effective search space: 1539381248
Effective search space used: 1539381248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (26.5 bits)