RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6068
(329 letters)
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
transporter, nucleotide translocation, membrane protein,
transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
f.42.1.1 PDB: 2c3e_A*
Length = 297
Score = 140 bits (355), Expect = 1e-39
Identities = 61/295 (20%), Positives = 118/295 (40%), Gaps = 46/295 (15%)
Query: 45 YPLTLIKTRLQLQ------KHDQLYKGLLDAGAKIYKSEGLGGLYRGFWVSSVQIF--SG 96
P+ +K LQ+Q ++ YKG++D +I K +G +RG + ++ F
Sbjct: 26 APIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQA 85
Query: 97 VMYIATYEGVRHVITKNNIHNNQ-----AKSLIAGAAASLVGQTIIVPFDVISQHLMVLG 151
+ + A + + + + Q A +L +G AA + P D L
Sbjct: 86 LNF-AFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRL---- 140
Query: 152 LATANQSKKKIVLEPLGITIDTSQTKFRTTMNIAQFIYKQDGFKGFYRGYLASLCAYVPN 211
A K +Q +F N I+K DG +G Y+G+ S+ +
Sbjct: 141 ---AADVGKG-----------AAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIY 186
Query: 212 SAFWWTFYHIYQEKLNRVFPDDF-SHLLIQCISGTLGGFTTTLITNPLDTIRARLQVQ-- 268
A ++ Y + + PD H+++ + L++ P DT+R R+ +Q
Sbjct: 187 RAAYFGVY----DTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSG 242
Query: 269 ------RTNSMLQTCKLLWIEEGFWMFSKGLSARLVQSVMFSFSIILGYETIKRF 317
+ + + +EG F KG + +++ + +F ++L Y+ IK+F
Sbjct: 243 RKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLVL-YDEIKKF 296
Score = 118 bits (297), Expect = 3e-31
Identities = 45/192 (23%), Positives = 79/192 (41%), Gaps = 31/192 (16%)
Query: 34 MLSSFCVRGSLYPLTLIKTRLQLQ----KHDQLYKGLLDAGAKIYKSEGLGGLYRGFWVS 89
S V YPL +TRL + + GL + KI+KS+GL GLY+GF VS
Sbjct: 124 ATSLCFV----YPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVS 179
Query: 90 SVQI--FSGVMYIATYEGVRHVITKNNIHNNQAKSLIAGAAASLVGQTIIVPFDVISQHL 147
I + Y Y+ + ++ + + S + + V + PFD + + +
Sbjct: 180 VQGIIIYRAA-YFGVYDTAKGMLPDPK-NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRM 237
Query: 148 MVLGLATANQSKKKIVLEPLGITIDTSQTKFRTTMNIAQFIYKQDGFKGFYRGYLASLCA 207
M+ QS +K + + T++ + I K +G K F++G +++
Sbjct: 238 MM-------QSGRK-----------GADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLR 279
Query: 208 YVPNSAFWWTFY 219
+ AF Y
Sbjct: 280 GMG-GAFVLVLY 290
Score = 95.4 bits (238), Expect = 7e-23
Identities = 40/212 (18%), Positives = 78/212 (36%), Gaps = 33/212 (15%)
Query: 120 AKSLIAGAAASLVGQTIIVPFDVISQHLMVLGLATANQSKKKIVLEPLGITIDTSQTKFR 179
K +AG A+ + +T + P + + L V Q K + +++ +++
Sbjct: 8 LKDFLAGGVAAAISKTAVAPIERVKLLLQV-------QHASKQI---------SAEKQYK 51
Query: 180 TTMNIAQFIYKQDGFKGFYRGYLASLCAYVPNSAFWWTFYHIYQEKLNRVFP---DDFSH 236
++ I K+ GF F+RG LA++ Y P A + F Y++ + +
Sbjct: 52 GIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRY 111
Query: 237 LLIQCISGTLGGFTTTLITNPLDTIRARLQVQRT--------NSMLQTCKLLWIEEGFWM 288
SG G T+ PLD R RL + ++ +G
Sbjct: 112 FAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRG 171
Query: 289 FSKGLSARLVQSVMF---SFSIILGYETIKRF 317
+G + + +++ F + Y+T K
Sbjct: 172 LYQGFNVSVQGIIIYRAAYFGV---YDTAKGM 200
Score = 67.3 bits (165), Expect = 6e-13
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 45 YPLTLIKTRLQLQ----KHDQLYKGLLDAGAKIYKSEGLGGLYRGFWVSSVQIFSGVMYI 100
YP ++ R+ +Q D +Y G +D KI K EG ++G W + ++ G +
Sbjct: 228 YPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVL 287
Query: 101 ATYEGVRHVI 110
Y+ ++ +
Sbjct: 288 VLYDEIKKFV 297
Score = 39.2 bits (92), Expect = 0.001
Identities = 19/113 (16%), Positives = 41/113 (36%), Gaps = 20/113 (17%)
Query: 232 DDFSHLLIQCISGTLGGFTTTLITNPLDTIRARLQVQRT----------NSMLQTCKLLW 281
D L ++G + + P++ ++ LQVQ ++ +
Sbjct: 2 DQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIP 61
Query: 282 IEEGFWMFSKGLSARLV-----QSVMFSFSIILGYETIKRFSIKSEYKQHVRW 329
E+GF F +G A ++ Q++ F+F + K+ + + W
Sbjct: 62 KEQGFLSFWRGNLANVIRYFPTQALNFAF-----KDKYKQIFLGGVDRHKQFW 109
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 128 bits (324), Expect = 5e-35
Identities = 61/313 (19%), Positives = 117/313 (37%), Gaps = 51/313 (16%)
Query: 33 SMLSSFCVRGSLYPLTLIKTRLQLQ---------KHDQLYKGLLDAGAKIYKSEGLGGLY 83
+ ++ +PL K RLQ+Q Y+G+L + ++EG LY
Sbjct: 12 ACIADLIT----FPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLY 67
Query: 84 RGFWVSSV-QIFSGVMYIATYEGVRHVITKNNIHNNQAKSLIAGAAASLVGQTIIVPFDV 142
G Q+ + I Y+ V+ TK + H L+AG+ + + P DV
Sbjct: 68 NGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDV 127
Query: 143 ISQHLMVLGLATANQSKKKIVLEPLGITIDTSQTKFRTTMNIAQFIYKQDGFKGFYRGYL 202
+ Q++ + ++++T+ + I +++G +G ++G
Sbjct: 128 VKVRF---------QAQARA----------GGGRRYQSTVEAYKTIAREEGIRGLWKGTS 168
Query: 203 ASLCAYVPNSAFWWTFYHIYQEKLNR--VFPDDFSHLLIQCISGTLGGFTTTLITNPLDT 260
++ + Y + ++ L + + DD L S GF TT+I +P+D
Sbjct: 169 PNVARNAIVNCAELVTYDLIKDTLLKANLMTDD---LPCHFTSAFGAGFCTTVIASPVDV 225
Query: 261 IRARLQVQRT---NSMLQTCKLLWIEEGFWMFSKGLSARLV-----QSVMFSFSIILGYE 312
++ R +S + +EG F KG + VMF YE
Sbjct: 226 VKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVT-----YE 280
Query: 313 TIKRFSIKSEYKQ 325
+KR + + +
Sbjct: 281 QLKRALMAAYQSR 293
Score = 71.9 bits (177), Expect = 1e-14
Identities = 35/208 (16%), Positives = 79/208 (37%), Gaps = 22/208 (10%)
Query: 123 LIAGAAASLVGQTIIVPFDVISQHLMVLGLATANQSKKKIVLEPLGITIDTSQTKFRTTM 182
+ A+ + I P D L + G E G+ + ++R +
Sbjct: 5 FLGAGTAACIADLITFPLDTAKVRLQIQG-------------ESQGLVRTAASAQYRGVL 51
Query: 183 NIAQFIYKQDGFKGFYRGYLASLCAYVPNSAFWWTFYHIYQEKLNRVFPDDFSHLLIQCI 242
+ + +G + Y G +A L + ++ Y ++ + + + + + +
Sbjct: 52 GTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTK--GSEHAGIGSRLL 109
Query: 243 SGTLGGFTTTLITNPLDTIRARLQVQ-------RTNSMLQTCKLLWIEEGFWMFSKGLSA 295
+G+ G + P D ++ R Q Q R S ++ K + EEG KG S
Sbjct: 110 AGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSP 169
Query: 296 RLVQSVMFSFSIILGYETIKRFSIKSEY 323
+ ++ + + + ++ Y+ IK +K+
Sbjct: 170 NVARNAIVNCAELVTYDLIKDTLLKANL 197
Score = 51.5 bits (124), Expect = 1e-07
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 15/95 (15%)
Query: 237 LLIQCISGTLGGFTTTLITNPLDTIRARLQVQRT-------------NSMLQTCKLLWIE 283
+ ++ + LIT PLDT + RLQ+Q +L T +
Sbjct: 1 MTVKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRT 60
Query: 284 EGFWMFSKGLSARLVQSVMFSFSIILG-YETIKRF 317
EG GL A L + + F+ S+ +G Y+++K+F
Sbjct: 61 EGPRSLYNGLVAGLQRQMSFA-SVRIGLYDSVKQF 94
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 0.001
Identities = 56/279 (20%), Positives = 89/279 (31%), Gaps = 90/279 (32%)
Query: 31 PLSMLSSFCVRGSLYPLTLIKTRL-----QLQKHDQLYKGLLDAGAKIYKSE------GL 79
PL+ LS GSL + L+ T QLQ +Q K L + + L
Sbjct: 8 PLT-LSH----GSLEHVLLVPTASFFIASQLQ--EQFNKILPEPTEGFAADDEPTTPAEL 60
Query: 80 GGLYRGFWVSSVQ-----IFSGVMYIATYEGVRHVITKNNIHNNQAKSLIAGAAASLVGQ 134
G + G+ S V+ F V+ + E + N+IH +L AA L+ +
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH-----AL----AAKLLQE 111
Query: 135 ---TIIVPFDVISQHLMVLGLATANQSKKKIVLEPLGITIDTSQTKFRTTMNIAQFIYKQ 191
T++ ++I ++ A + K L + + +A F
Sbjct: 112 NDTTLVKTKELIKNYI--TARIMAKRPFDKKSNSALFRAVGEGNAQL-----VAIF---- 160
Query: 192 DGFKGFYRGY---LASLCAYVPNSAFWWTFYHIYQEKLNRVFPDDFSHLLIQCISGTLGG 248
G +G Y L L Y Y V D I+ + TL
Sbjct: 161 -GGQGNTDDYFEELRDL-------------YQTY-----HVLVGDL----IKFSAETL-- 195
Query: 249 FTTTLITNPLDTIRAR---LQVQRTNSMLQTCKLLWIEE 284
+ LI LD + L + W+E
Sbjct: 196 --SELIRTTLDAEKVFTQGLNILE-----------WLEN 221
Score = 38.1 bits (88), Expect = 0.004
Identities = 34/248 (13%), Positives = 65/248 (26%), Gaps = 112/248 (45%)
Query: 31 PLSMLSSFCVRGSLYPLTLIKTRLQLQKHDQLYKGLLDAGAKIYKSEGLGGLYRGFWVSS 90
P MLS + T+ Q+Q + L AG ++
Sbjct: 335 PSPMLS---ISNL--------TQEQVQDYVNKTNSHLPAGKQVE---------------- 367
Query: 91 VQIFSGVMYIATYEGVRHVITKNNIHNNQAKSLIAGAAASLVGQTIIVPFDVISQHLMVL 150
I+ G ++++ ++G SL G + L
Sbjct: 368 ---------ISLVNGAKNLV-------------VSGPPQSLYG--------------LNL 391
Query: 151 GL------ATANQSKKKIVLEPLGITIDTSQTKFRTTMNIAQF--IYKQDGFKGFYRGYL 202
L + +QS+ P S+ K + + +F + F+ L
Sbjct: 392 TLRKAKAPSGLDQSRI-----PF------SERKLKFSN---RFLPV-----ASPFHSHLL 432
Query: 203 AS----LCAYVPNSAFWW-------TFYHIYQEKLNRVFPDDFSHLLIQCISGTLGGFTT 251
+ + + + Y + RV S ++ CI
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCI--------- 483
Query: 252 TLITNPLD 259
I P+
Sbjct: 484 --IRLPVK 489
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 0.002
Identities = 53/381 (13%), Positives = 114/381 (29%), Gaps = 92/381 (24%)
Query: 8 ADTQTPILITNIEWEMMDKTQFFPLSMLSSFCVRGSLYPLTLIKTRLQLQKHDQ--LYKG 65
+ + P ++T + E D+ R Y L L + L+L+ + G
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY-LKLRQALLELRPAKNVLID-G 157
Query: 66 LLDAG-----AKIYKSEGLGGL--YRGFWVSSVQIFSGVMYIATYEGVRHVITKN----- 113
+L +G + S + ++ FW++ S + + + + I N
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 114 --------NIHNNQA--KSLIAGA--AASLV------GQTIIVPFDVISQHLMVLGLATA 155
IH+ QA + L+ L+ F++ + L+ T
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT----TR 273
Query: 156 NQS---------KKKIVLEPLGITIDTSQTK--FRTTMNIAQFIYKQDGFKGFYRGYLAS 204
+ I L+ +T+ + K ++ ++ R L+
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR-RLSI 332
Query: 205 LCAYVPNSAFWWTFY-HIYQEKLNRVF--------PDDFSHLLIQCISGTLGGFTTTLIT 255
+ + + W + H+ +KL + P ++ + + L F
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR-----LSVF------ 381
Query: 256 NPLDTIRARLQVQRTNSMLQTCKLLWIEEGFW--------MFSKGLSARLVQSVMFSFSI 307
P + L+W + + L + Q + SI
Sbjct: 382 -PPS----------AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK--QPKESTISI 428
Query: 308 ILGYETIKRFSIKSEYKQHVR 328
Y +K +++EY H
Sbjct: 429 PSIYLELKV-KLENEYALHRS 448
Score = 31.7 bits (71), Expect = 0.41
Identities = 37/282 (13%), Positives = 81/282 (28%), Gaps = 97/282 (34%)
Query: 9 DTQTPILITNIEWEMMDKTQFFPLSMLSSFCVRG--------------SLYPLTLIKTRL 54
P ++ ++ W + K+ + +++ S+Y +K
Sbjct: 384 SAHIPTILLSLIWFDVIKSD--VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441
Query: 55 QLQKHDQL---YKGLLDAGAKIYKSEGLGGLYRGFWVSSVQIFSGVMYIATYEGVRHVIT 111
+ H + Y K + S+ L Y Y ++ G H+
Sbjct: 442 EYALHRSIVDHYNIP-----KTFDSDDLIPPYLD------------QYFYSHIG-HHL-- 481
Query: 112 KNNIHNNQAKSLIAGAAASLVGQTIIVPFDVISQHLMVLGLATANQSKKKIVLEPLGITI 171
NI + + +L + + + F + Q + A G +
Sbjct: 482 -KNIEHPERMTLF---------RMVFLDFRFLEQKIRHDSTA----------WNASGSIL 521
Query: 172 DTSQT--KFRTTMNIAQFIYKQDGFKGFYRGYLASLCAYVPNSAFWWTFYHIYQEKLNRV 229
+T Q ++ +I D Y + ++ ++P ++ K
Sbjct: 522 NTLQQLKFYK------PYICDND---PKYERLVNAILDFLPKIE-----ENLICSK---- 563
Query: 230 FPDDFSHLLIQCISGTLGGFTTTLITNPLDTI--RARLQVQR 269
+ D L++ + + I A QVQR
Sbjct: 564 YTD-----LLRIA-----------LMAEDEAIFEEAHKQVQR 589
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.87
Identities = 10/25 (40%), Positives = 11/25 (44%), Gaps = 7/25 (28%)
Query: 190 KQDGFKGFYRGYL-ASLCAYVPNSA 213
KQ K L ASL Y +SA
Sbjct: 19 KQA-LKK-----LQASLKLYADDSA 37
>2icg_A LIN2918 protein; hypothetical protein, structural genomics, PSI-
protein structure initiative, joint center for
structural G JCSG; 1.65A {Listeria innocua} SCOP:
d.369.1.1
Length = 160
Score = 29.3 bits (65), Expect = 1.2
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 220 HIYQEKLNRVFPDDFSHLLIQCISGTLGG 248
IYQ+ L FP+ + L + + T G
Sbjct: 33 KIYQDALGNEFPETYKLFLEKYGTLTFNG 61
>1dy2_A Collagen alpha1(XV) chain; angiogenesis inhibitor; 2.0A {Mus
musculus} SCOP: d.169.1.5
Length = 180
Score = 28.1 bits (62), Expect = 2.6
Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 3/99 (3%)
Query: 46 PLTLIKTRLQLQKHDQLYKGLLDAGAKIY---KSEGLGGLYRGFWVSSVQIFSGVMYIAT 102
PL + L L + G + A + + ++ GL +R F S +Q S V+ A
Sbjct: 2 PLAYERPVLHLVALNTPVAGDIRADFQCFQQARAAGLLSTFRAFLSSHLQDLSTVVRKAE 61
Query: 103 YEGVRHVITKNNIHNNQAKSLIAGAAASLVGQTIIVPFD 141
G+ V K + N S+ +G I FD
Sbjct: 62 RFGLPIVNLKGQVLFNNWDSIFSGDGGQFNTHIPIYSFD 100
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C;
cytochrome BC1, membrane protein, heme protein, rieske
iron protein, cytochrome B, complex III; HET: BHG HEM
HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1
PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G*
1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G*
1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G*
...
Length = 81
Score = 26.7 bits (59), Expect = 2.9
Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 11/59 (18%)
Query: 189 YKQDGFKGFYRGYLASLCAYVPNSAFWWT-----FYHIYQ------EKLNRVFPDDFSH 236
++Q F ++ + ++ FY +Y EK R P + +
Sbjct: 21 FEQRAFPHYFSKGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSKRKNPAAYEN 79
>2prv_A Uncharacterized protein YOBK; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE; 1.30A {Bacillus subtilis} SCOP:
d.369.1.1
Length = 153
Score = 27.3 bits (60), Expect = 4.8
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 220 HIYQEKLNRVFPDDFSHLLIQCISGTLGG 248
+E L P+ + L + +G L G
Sbjct: 30 GRIEENLQCDLPNSYKWFLEKYGAGGLFG 58
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis,
eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida
glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Length = 540
Score = 27.5 bits (61), Expect = 7.2
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 8/63 (12%)
Query: 120 AKSLIAGAAASLVGQTIIVPFDVISQHLMVLGLATANQSKKKIVLEPLGITIDTSQTKFR 179
L A A+L+ T V ++ + N K+ IV +P+G + T+ R
Sbjct: 299 VNDLAAIPHATLLLNT----GSVAPPEMLKAAIRAYNDVKRPIVFDPVGYSA----TETR 350
Query: 180 TTM 182
+
Sbjct: 351 LLL 353
>3tav_A Methionine aminopeptidase; ssgcid, seattle structural genomics
center for infectious DI protease, hydrolase; 2.15A
{Mycobacterium abscessus}
Length = 286
Score = 27.2 bits (61), Expect = 8.7
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 4/27 (14%)
Query: 186 QFIYKQDG---FKGFYRGYLASLCAYV 209
I + F G Y G+ AS+C+ V
Sbjct: 76 SVIREAGAVPSFLG-YHGFPASICSSV 101
>4a01_A Proton pyrophosphatase; hydrolase, membrane protein, proton
pumping; HET: DMU; 2.35A {Vigna radiata}
Length = 766
Score = 27.5 bits (61), Expect = 8.8
Identities = 7/55 (12%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 79 LGGLYRGFWVSSVQIFSGVMYIATYEGVRHVITKNNIHNNQAKSLIAGAAASLVG 133
L + +S+V + + + + ++ + T N + VG
Sbjct: 358 EPALKKQLVISTV-LMTIGVAVVSFVALPTSFTIFNFGVQKDVKSWQLFLCVAVG 411
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus
sphaericus} SCOP: c.2.1.7 c.58.1.1
Length = 364
Score = 27.1 bits (61), Expect = 9.0
Identities = 8/20 (40%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 109 VITKNNIHNNQAKSLIAGAA 128
V+ I +AK +IAG+A
Sbjct: 242 VLNDFTIPQLKAK-VIAGSA 260
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative
deamination mechanism, oxidoreductase; HET: PHE NAD;
1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB:
1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*
Length = 355
Score = 27.1 bits (61), Expect = 9.2
Identities = 7/20 (35%), Positives = 9/20 (45%), Gaps = 1/20 (5%)
Query: 109 VITKNNIHNNQAKSLIAGAA 128
VIT ++AGAA
Sbjct: 243 VITTEVARTLDCS-VVAGAA 261
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.138 0.417
Gapped
Lambda K H
0.267 0.0637 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,791,185
Number of extensions: 270424
Number of successful extensions: 777
Number of sequences better than 10.0: 1
Number of HSP's gapped: 750
Number of HSP's successfully gapped: 26
Length of query: 329
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 235
Effective length of database: 4,077,219
Effective search space: 958146465
Effective search space used: 958146465
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (25.9 bits)