RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6068
(329 letters)
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
heart isoform t1 [TaxId: 9913]}
Length = 292
Score = 78.6 bits (192), Expect = 2e-17
Identities = 52/300 (17%), Positives = 111/300 (37%), Gaps = 42/300 (14%)
Query: 35 LSSFCVRGSLYPLTLIKTRLQLQ------KHDQLYKGLLDAGAKIYKSEGLG-GLYRGFW 87
+++ + ++ P+ +K LQ+Q ++ YKG++D +I K +G
Sbjct: 15 VAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLA 74
Query: 88 VSSVQIFSGVMYIATYEGVRHVITKNNIHNNQ-----AKSLIAGAAASLVGQTIIVPFDV 142
+ + A + + + + Q A +L +G AA + P D
Sbjct: 75 NVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDF 134
Query: 143 ISQHLMVLGLATANQSKKKIVLEPLGITIDTSQTKFRTTMNIAQFIYKQDGFKGFYRGYL 202
L + +Q +F N I+K DG +G Y+G+
Sbjct: 135 ARTRLAA------------------DVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFN 176
Query: 203 ASLCAYVPNSAFWWTFYHIYQEKLNRVFPDDFSHLLIQCISGTLGGFTTTLITNPLDTIR 262
S+ + A ++ Y + + H+++ + L++ P DT+R
Sbjct: 177 VSVQGIIIYRAAYFGVYDTAK---GMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVR 233
Query: 263 ARLQVQ--------RTNSMLQTCKLLWIEEGFWMFSKGLSARLVQSVMFSFSIILGYETI 314
R+ +Q + + + +EG F KG + +++ + +F ++L Y+ I
Sbjct: 234 RRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLVL-YDEI 292
Score = 56.6 bits (135), Expect = 7e-10
Identities = 36/203 (17%), Positives = 69/203 (33%), Gaps = 22/203 (10%)
Query: 23 MMDKTQFFPLSMLSSFCVRGSLYPLTLIKTRLQLQKHDQL----YKGLLDAGAKIYKSEG 78
+ +YPL +TRL + GL + KI+KS+G
Sbjct: 108 WRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDG 167
Query: 79 LGGLYRGFWVSSVQIFSGVMYIATYEGVRHVITKNNIHNNQAKSLIAGAAASLVGQTIIV 138
L GLY+GF VS I + + + + S + + V +
Sbjct: 168 LRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSY 227
Query: 139 PFDVISQHLMVLGLATANQSKKKIVLEPLGITIDTSQTKFRTTMNIAQFIYKQDGFKGFY 198
PFD + + +M+ + + T++ + I K +G K F+
Sbjct: 228 PFDTVRRRMMMQSGRKG------------------ADIMYTGTVDCWRKIAKDEGPKAFF 269
Query: 199 RGYLASLCAYVPNSAFWWTFYHI 221
+G +++ + + + I
Sbjct: 270 KGAWSNVLRGMGGAFVLVLYDEI 292
Score = 54.0 bits (128), Expect = 6e-09
Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
Query: 18 NIEWEMMDKTQFFPLSMLSSFCVRGSLYPLTLIKTRLQLQK----HDQLYKGLLDAGAKI 73
+ + + + ++ + YP ++ R+ +Q D +Y G +D KI
Sbjct: 200 LPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKI 259
Query: 74 YKSEGLGGLYRGFWVSSVQIFSGVMYIATYEGV 106
K EG ++G W + ++ G + Y+ +
Sbjct: 260 AKDEGPKAFFKGAWSNVLRGMGGAFVLVLYDEI 292
Score = 53.2 bits (126), Expect = 1e-08
Identities = 38/196 (19%), Positives = 68/196 (34%), Gaps = 20/196 (10%)
Query: 120 AKSLIAGAAASLVGQTIIVPFDVISQHLMVLGLATANQSKKKIVLEPLGITIDTSQTKFR 179
K +AG A+ + +T + P + + L V + +++ +++
Sbjct: 7 LKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQI----------------SAEKQYK 50
Query: 180 TTMNIAQFIYKQDGFKGFYRGYLASLCAYVPNSAFWWTFYHIYQEKLNRVF---PDDFSH 236
++ I K+ GF F+RG LA++ Y P A + F Y++ + +
Sbjct: 51 GIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRY 110
Query: 237 LLIQCISGTLGGFTTTLITNPLDTIRARLQVQ-RTNSMLQTCKLLWIEEGFWMFSKGLSA 295
SG G T+ PLD R RL + + L S GL
Sbjct: 111 FAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRG 170
Query: 296 RLVQSVMFSFSIILGY 311
+ II+
Sbjct: 171 LYQGFNVSVQGIIIYR 186
Score = 43.6 bits (101), Expect = 2e-05
Identities = 15/102 (14%), Positives = 35/102 (34%), Gaps = 10/102 (9%)
Query: 238 LIQCISGTLGGFTTTLITNPLDTIRARLQVQRT----------NSMLQTCKLLWIEEGFW 287
L ++G + + P++ ++ LQVQ ++ + E+GF
Sbjct: 7 LKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFL 66
Query: 288 MFSKGLSARLVQSVMFSFSIILGYETIKRFSIKSEYKQHVRW 329
F +G A +++ + K+ + + W
Sbjct: 67 SFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFW 108
>d2icga1 d.369.1.1 (A:1-158) Uncharacterized protein Lin2918
{Listeria innocua [TaxId: 1642]}
Length = 158
Score = 30.8 bits (69), Expect = 0.11
Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Query: 222 YQEKLNRVFPDDFSHLLIQCISGTLGGFTTTLITNPLDTIRARLQVQRTNSMLQTCKLLW 281
YQ+ L FP+ + L + + T G + I+ + + V+ +T
Sbjct: 34 YQDALGNEFPETYKLFLEKYGTLTFNGVSFYGISKRGLSAASIPDVKFATEQARTFG--D 91
Query: 282 IEEGFWMFS 290
I + M
Sbjct: 92 INKEMIMIK 100
>d2b4ya1 c.31.1.5 (A:36-302) NAD-dependent deacetylase sirtuin-5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 267
Score = 29.8 bits (66), Expect = 0.42
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 193 GFKGFYRGY----LASLCAYVPNSAFWWTFYHIYQEKLNRVFPDDFSHLLIQCISGTLG- 247
G G++R + LA+ A+ N + W FYH +E + P+ + +C +
Sbjct: 37 GAGGYWRKWQAQDLATPLAFAHNPSRVWEFYHYRREVMGSKEPNAGHRAIAECETRLGKQ 96
Query: 248 GFTTTLITNPLDTIRAR 264
G +IT +D + +
Sbjct: 97 GRRVVVITQNIDELHRK 113
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens)
[TaxId: 9606]}
Length = 273
Score = 26.5 bits (58), Expect = 4.1
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 2/73 (2%)
Query: 168 GITIDTSQTKFRTTMNIAQFIYKQDGFKGFYRGYLASLCAYVPNSAFWWTFYHIYQEKLN 227
T + + M + +FI+ +D F+ FY+ LA +++ + KL
Sbjct: 21 EATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSML--SKLK 78
Query: 228 RVFPDDFSHLLIQ 240
F+ L
Sbjct: 79 HECGAAFTSKLEG 91
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 25.8 bits (56), Expect = 5.7
Identities = 11/62 (17%), Positives = 23/62 (37%)
Query: 224 EKLNRVFPDDFSHLLIQCISGTLGGFTTTLITNPLDTIRARLQVQRTNSMLQTCKLLWIE 283
E++ + + F L + + T L TI++R+ N + L+ +
Sbjct: 89 ERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNVPKEFRDLVKEK 148
Query: 284 EG 285
G
Sbjct: 149 IG 150
>d1dy2a_ d.169.1.5 (A:) Endostatin domain of collagen alpha1(xv)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 168
Score = 25.1 bits (55), Expect = 8.5
Identities = 18/64 (28%), Positives = 25/64 (39%)
Query: 78 GLGGLYRGFWVSSVQIFSGVMYIATYEGVRHVITKNNIHNNQAKSLIAGAAASLVGQTII 137
GL +R F S +Q S V+ A G+ V K + N S+ +G I
Sbjct: 31 GLLSTFRAFLSSHLQDLSTVVRKAERFGLPIVNLKGQVLFNNWDSIFSGDGGQFNTHIPI 90
Query: 138 VPFD 141
FD
Sbjct: 91 YSFD 94
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.138 0.417
Gapped
Lambda K H
0.267 0.0533 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,168,749
Number of extensions: 50980
Number of successful extensions: 170
Number of sequences better than 10.0: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 12
Length of query: 329
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 243
Effective length of database: 1,226,816
Effective search space: 298116288
Effective search space used: 298116288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.6 bits)