BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy607
(129 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QS7|A Chain A, Crystal Structure Of A Putative Oxidoreductase Of The
DsreDSRF-Like Family (Sso1126) From Sulfolobus
Solfataricus P2 At 2.09 A Resolution
pdb|2QS7|B Chain B, Crystal Structure Of A Putative Oxidoreductase Of The
DsreDSRF-Like Family (Sso1126) From Sulfolobus
Solfataricus P2 At 2.09 A Resolution
pdb|2QS7|C Chain C, Crystal Structure Of A Putative Oxidoreductase Of The
DsreDSRF-Like Family (Sso1126) From Sulfolobus
Solfataricus P2 At 2.09 A Resolution
pdb|2QS7|D Chain D, Crystal Structure Of A Putative Oxidoreductase Of The
DsreDSRF-Like Family (Sso1126) From Sulfolobus
Solfataricus P2 At 2.09 A Resolution
Length = 144
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 16/76 (21%)
Query: 26 EIPYPNWHQLMNMAQMATPTATLVETRGLRPFKSS--EEYLYAMKEDLAEWLNNLYVELH 83
E YP WHQL+ A+ E ++ F S E+ +EDLAE+++++
Sbjct: 81 EXKYPXWHQLVQQAK---------EIGEVKVFACSTTXEFFGIKREDLAEFVDDV----- 126
Query: 84 MNVANFMDRLDTGVTL 99
+ VA F+DR + G TL
Sbjct: 127 VGVATFLDRAEGGTTL 142
>pdb|4HVT|A Chain A, Structure Of A Post-Proline Cleaving Enzyme From
Rickettsia Typhi
Length = 711
Score = 30.8 bits (68), Expect = 0.19, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 17 WRDFLIQSYEIPYPNWHQLMNMAQMATPTATLVETRGLRP-FKSSEEYLYAM 67
WR L+ +Y PNW L++ +++ V RG+ F++ YL +M
Sbjct: 97 WRRTLVDNYSKDKPNWEVLIDFDKLSKKIGKKVAYRGVSNCFQNPNRYLISM 148
>pdb|1NKW|F Chain F, Crystal Structure Of The Large Ribosomal Subunit From
Deinococcus Radiodurans
pdb|1NWX|F Chain F, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Abt-773
pdb|1NWY|F Chain F, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Azithromycin
pdb|1SM1|F Chain F, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Quinupristin And Dalfopristin
pdb|1XBP|F Chain F, Inhibition Of Peptide Bond Formation By Pleuromutilins:
The Structure Of The 50s Ribosomal Subunit From
Deinococcus Radiodurans In Complex With Tiamulin
Length = 146
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 14/77 (18%)
Query: 31 NWHQLMNMAQMATPTATLVETRGLRPFKSSEEYLYAMKEDLAEWLNNLYVEL-------- 82
NW +A AT T LR + + A+ EDLA LN + VEL
Sbjct: 27 NWLIPQGLAVSATRTNMKTLEAQLRSIEKRQAQEKAVAEDLASRLNGVAVELSVRAGEGK 86
Query: 83 ------HMNVANFMDRL 93
H +VAN +D+L
Sbjct: 87 IYGAVTHQDVANSLDQL 103
>pdb|2YLA|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YLA|B Chain B, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YLA|C Chain C, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YLA|D Chain D, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 442
Score = 28.9 bits (63), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 29 YPNWHQLMN-MAQMATPTATLVETRGLRPFKSSEEYLYAMKEDL 71
Y W+QL A+ A A + + RGL+P ++ + Y K+D+
Sbjct: 196 YLKWYQLYGKFAEYANTLAAMAKERGLQPMAFNDGFYYEDKDDV 239
>pdb|2YL5|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL5|B Chain B, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL5|C Chain C, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL5|D Chain D, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 442
Score = 28.9 bits (63), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 29 YPNWHQLMN-MAQMATPTATLVETRGLRPFKSSEEYLYAMKEDL 71
Y W+QL A+ A A + + RGL+P ++ + Y K+D+
Sbjct: 196 YLKWYQLYGKFAEYANTLAAMAKERGLQPMAFNDGFYYEDKDDV 239
>pdb|2YL9|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL9|B Chain B, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL9|C Chain C, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL9|D Chain D, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 457
Score = 28.5 bits (62), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 29 YPNWHQLMN-MAQMATPTATLVETRGLRPFKSSEEYLYAMKEDL 71
Y W+QL A+ A A + + RGL+P ++ + Y K+D+
Sbjct: 213 YLKWYQLYGKFAEYANTLAAMAKERGLQPMAFNDGFYYEDKDDV 256
>pdb|1WYP|A Chain A, Solution Structure Of The Ch Domain Of Human Calponin 1
Length = 136
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 51 TRGLRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLC 100
+ G K +++Y + +++L EW+ + N NFMD L G+ LC
Sbjct: 2 SSGSSGNKLAQKYDHQREQELREWIEGVTGRRIGN--NFMDGLKDGIILC 49
>pdb|3H35|A Chain A, Structure Of The Uncharacterized Protein Abo_0056 From The
Hydrocarbon-Degrading Marine Bacterium Alcanivorax
Borkumensis Sk2.
pdb|3H35|B Chain B, Structure Of The Uncharacterized Protein Abo_0056 From The
Hydrocarbon-Degrading Marine Bacterium Alcanivorax
Borkumensis Sk2.
pdb|3H35|C Chain C, Structure Of The Uncharacterized Protein Abo_0056 From The
Hydrocarbon-Degrading Marine Bacterium Alcanivorax
Borkumensis Sk2
Length = 185
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 71 LAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIKEQ 114
+A +LN+L+ + + ++F + L T LC G S F K+ + Q
Sbjct: 106 IALYLNHLFAQGLVIASDFTESLRTDYELCEGDSDFRKAQAELQ 149
>pdb|3UGF|A Chain A, Crystal Structure Of A 6-Sst6-Sft From Pachysandra
Terminalis
pdb|3UGF|B Chain B, Crystal Structure Of A 6-Sst6-Sft From Pachysandra
Terminalis
pdb|3UGG|A Chain A, Crystal Structure Of A 6-Sst6-Sft From Pachysandra
Terminalis In Complex With 1-Kestose
pdb|3UGG|B Chain B, Crystal Structure Of A 6-Sst6-Sft From Pachysandra
Terminalis In Complex With 1-Kestose
pdb|3UGH|A Chain A, Crystal Structure Of A 6-Sst6-Sft From Pachysandra
Terminalis In Complex With 6-Kestose
pdb|3UGH|B Chain B, Crystal Structure Of A 6-Sst6-Sft From Pachysandra
Terminalis In Complex With 6-Kestose
Length = 546
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 31 NWHQLMNMAQMATPTATLVETRGLRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFM 90
W + T A + ET+ + FK EE L+A+ D W V+L+
Sbjct: 168 TWRIAIGAKYNTTGIAMVYETKDFKSFKLLEELLHAVP-DTGLWEC---VDLYPVSTTGE 223
Query: 91 DRLDTGVTLCRGKSTFFKSSIKEQRRSY 118
L+T V + K K+SI EQ+R Y
Sbjct: 224 KGLETSVNGPKVKHV-LKASIDEQQRDY 250
>pdb|3FFZ|A Chain A, Domain Organization In Clostridium Butulinum Neurotoxin
Type E Is Unique: Its Implication In Faster
Translocation
pdb|3FFZ|B Chain B, Domain Organization In Clostridium Butulinum Neurotoxin
Type E Is Unique: Its Implication In Faster
Translocation
Length = 1252
Score = 26.9 bits (58), Expect = 3.4, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 75 LNNLYVELHMNVANFMDRLDTGVT---LCRGKSTFFKS--SIKEQRRSYCPEIADGE 126
+NNL V AN R+ T +T L + F K+ S+K R+S C EI +GE
Sbjct: 377 INNLKVNFRGQNANLNPRIITPITGRGLVKKIIRFCKNIVSVKGIRKSICIEINNGE 433
>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain
Specificity: Crystal Structure Of Human Very-Long-Chain
Acyl-Coa Dehydrogenase
Length = 587
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 90 MDRLDTGVTLCRGKSTFFKSSI----KEQRRSYCPEIADGE 126
M L G+TL +S FK + K Q+ Y P++A GE
Sbjct: 101 MHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGE 141
>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa
Dehydrogenase (acadvl)
Length = 607
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 90 MDRLDTGVTLCRGKSTFFKSSI----KEQRRSYCPEIADGE 126
M L G+TL +S FK + K Q+ Y P++A GE
Sbjct: 121 MHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGE 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,904,329
Number of Sequences: 62578
Number of extensions: 137108
Number of successful extensions: 321
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 317
Number of HSP's gapped (non-prelim): 19
length of query: 129
length of database: 14,973,337
effective HSP length: 88
effective length of query: 41
effective length of database: 9,466,473
effective search space: 388125393
effective search space used: 388125393
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)