BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy607
(129 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5SSG4|GA2L2_MOUSE GAS2-like protein 2 OS=Mus musculus GN=Gas2l2 PE=2 SV=1
Length = 860
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/54 (59%), Positives = 41/54 (75%), Gaps = 1/54 (1%)
Query: 52 RGLRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKST 105
R +RPFKSSE+YL AMKEDLAEWL +LY L ++ NF+ L+TG+ LCR +T
Sbjct: 19 RSIRPFKSSEQYLEAMKEDLAEWLRDLY-GLDIDADNFLRVLETGLVLCRHANT 71
>sp|Q8NHY3|GA2L2_HUMAN GAS2-like protein 2 OS=Homo sapiens GN=GAS2L2 PE=2 SV=1
Length = 880
Score = 65.5 bits (158), Expect = 9e-11, Method: Composition-based stats.
Identities = 30/48 (62%), Positives = 39/48 (81%), Gaps = 1/48 (2%)
Query: 54 LRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCR 101
+RPFKSSE+YL AMKEDLAEWL +LY L ++ ANF+ L+TG+ LC+
Sbjct: 21 IRPFKSSEQYLEAMKEDLAEWLRDLY-GLDIDAANFLQVLETGLVLCQ 67
>sp|Q8JZP9|GA2L1_MOUSE GAS2-like protein 1 OS=Mus musculus GN=Gas2l1 PE=2 SV=1
Length = 678
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 3/64 (4%)
Query: 41 MATPTATLVET--RGLRPFKSSEEYLYAMKEDLAEWLNNLY-VELHMNVANFMDRLDTGV 97
MA P A + + + +RPF+SSE Y+ AMKEDLA+WLN LY + L + F+ L TG
Sbjct: 1 MANPVAGIAGSAAKSVRPFRSSEAYVEAMKEDLADWLNALYSLGLPGSGDGFLTGLATGT 60
Query: 98 TLCR 101
TLC+
Sbjct: 61 TLCQ 64
>sp|Q99501|GA2L1_HUMAN GAS2-like protein 1 OS=Homo sapiens GN=GAS2L1 PE=1 SV=2
Length = 681
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 28/38 (73%), Gaps = 2/38 (5%)
Query: 41 MATPTATLVET--RGLRPFKSSEEYLYAMKEDLAEWLN 76
MA P A + + + +RPF+SSE Y+ AMKEDLAEWLN
Sbjct: 1 MADPVAGIAGSAAKSVRPFRSSEAYVEAMKEDLAEWLN 38
>sp|P11862|GAS2_MOUSE Growth arrest-specific protein 2 OS=Mus musculus GN=Gas2 PE=1 SV=1
Length = 314
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 61 EEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTF---FKSSI 111
E L MKEDLA WL NL + + FM++LD G LC+ +T FK S+
Sbjct: 31 EANLLPMKEDLALWLTNLLGK-EITAETFMEKLDNGALLCQLAATVQEKFKESM 83
>sp|O43903|GAS2_HUMAN Growth arrest-specific protein 2 OS=Homo sapiens GN=GAS2 PE=1 SV=1
Length = 313
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 61 EEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTF---FKSSI 111
E L MKEDLA WL NL + + FM++LD G LC+ T FK S+
Sbjct: 30 EANLLPMKEDLALWLTNLLGK-EITAETFMEKLDNGALLCQLAETMQEKFKESM 82
>sp|O42957|ULP1_SCHPO Ubiquitin-like-specific protease 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ulp1 PE=3 SV=1
Length = 568
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 73 EWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIKEQRRSYC 119
+WLN+ + +MN+ + ++D+ + G +TFF +S+ QRR Y
Sbjct: 391 QWLNDEVINFYMNLISERSKIDSSLPRVHGFNTFFYTSL--QRRGYA 435
>sp|Q86XJ1|GA2L3_HUMAN GAS2-like protein 3 OS=Homo sapiens GN=GAS2L3 PE=1 SV=1
Length = 694
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 61 EEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCR 101
E L M+EDL+ WL+ L + + + ++ LD GV LC+
Sbjct: 44 EATLLPMQEDLSIWLSGL-LGIKVKAEKLLEELDNGVLLCQ 83
>sp|Q5F7G0|SYQ_NEIG1 Glutamine--tRNA ligase OS=Neisseria gonorrhoeae (strain ATCC 700825
/ FA 1090) GN=glnS PE=3 SV=2
Length = 562
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 56 PFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRL-DTGVTLCRGKSTFFKSSIKEQ 114
P K ++EY+ A+KED+ EWL + +++ DRL D V L + + E+
Sbjct: 72 PEKENDEYVNAIKEDV-EWLGFHWAGEPRFASDYFDRLYDYAVGLIKDGKAYVDDLTPEE 130
Query: 115 RRSY 118
R Y
Sbjct: 131 MREY 134
>sp|Q756E1|DOT1_ASHGO Histone-lysine N-methyltransferase, H3 lysine-79 specific OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=DOT1 PE=3 SV=2
Length = 575
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 19 DFLIQSYEIPYPNWHQLMNMAQMATPTATLVETRGLRPFKSSEEYLYAMKEDLAEWLNNL 78
+ L Q+ +IP H ++ QMA L GL+ ++S ++Y E L +L+ +
Sbjct: 321 EHLQQTKKIPRAFIHDIL---QMAYSRCVLPNVNGLKEYRSFSNFVYG--ELLPTFLSTV 375
Query: 79 YVELHMNVANFMDRLDTGVTLC 100
Y + + L +GV C
Sbjct: 376 YQQCDLKPGQIFIDLGSGVGNC 397
>sp|P57000|SYQ_NEIMA Glutamine--tRNA ligase OS=Neisseria meningitidis serogroup A /
serotype 4A (strain Z2491) GN=glnS PE=3 SV=1
Length = 562
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 56 PFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRL-DTGVTLCRGKSTFFKSSIKEQ 114
P K ++EY+ A+KED+ EWL + +N+ D+L D V L + + E+
Sbjct: 72 PEKENDEYVNAIKEDV-EWLGFHWAGEPRFASNYFDQLYDYAVGLIKDGKAYVDDLTPEE 130
Query: 115 RRSY 118
R Y
Sbjct: 131 MREY 134
>sp|P56927|SYQ_NEIMB Glutamine--tRNA ligase OS=Neisseria meningitidis serogroup B
(strain MC58) GN=glnS PE=3 SV=1
Length = 562
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 56 PFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRL-DTGVTLCRGKSTFFKSSIKEQ 114
P K ++EY+ A+KED+ EWL + +N+ D+L D V L + + E+
Sbjct: 72 PEKENDEYVNAIKEDV-EWLGFHWAGEPRFASNYFDQLYDYAVGLIKDGKAYVDDLTPEE 130
Query: 115 RRSY 118
R Y
Sbjct: 131 MREY 134
>sp|Q3UWW6|GA2L3_MOUSE GAS2-like protein 3 OS=Mus musculus GN=Gas2l3 PE=2 SV=1
Length = 683
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 61 EEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCR 101
E L M+EDL+ WL+ L + + + ++ LD GV LC+
Sbjct: 46 EATLLPMQEDLSIWLSGL-LGVDIKAERLLEELDNGVLLCQ 85
>sp|Q041W0|Y1400_LACGA UPF0348 protein LGAS_1400 OS=Lactobacillus gasseri (strain ATCC
33323 / DSM 20243) GN=LGAS_1400 PE=3 SV=1
Length = 385
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 29 YPNWHQLMNMAQMATPTATLVETRGLRPFKSSEEYLYAMKEDL 71
YPNW+ L N + +A+L E R + ++ SE Y MKE++
Sbjct: 231 YPNWNLLFNFLKYRIESASLEELRSI--YQMSEGLEYKMKEEI 271
>sp|Q9RY49|RL9_DEIRA 50S ribosomal protein L9 OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=rplI PE=1 SV=1
Length = 146
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 14/77 (18%)
Query: 31 NWHQLMNMAQMATPTATLVETRGLRPFKSSEEYLYAMKEDLAEWLNNLYVEL-------- 82
NW +A AT T LR + + A+ EDLA LN + VEL
Sbjct: 27 NWLIPQGLAVSATRTNMKTLEAQLRSIEKRQAQEKAVAEDLASRLNGVAVELSVRAGEGK 86
Query: 83 ------HMNVANFMDRL 93
H +VAN +D+L
Sbjct: 87 IYGAVTHQDVANSLDQL 103
>sp|Q52KW0|SHAN2_XENLA SH3 and multiple ankyrin repeat domains protein 2 OS=Xenopus laevis
GN=shank2 PE=2 SV=1
Length = 1292
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 MNMAQMATPTATLVETR-GLRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLD 94
M+M + +P+ ++++ +PF + +++ K+D+AEWL +L++ H + FMD
Sbjct: 1199 MSMGRSRSPSPSILQQPISNKPFSAKPIHMWT-KQDVAEWLESLHLGEHREM--FMDNEI 1255
Query: 95 TGVTL 99
G L
Sbjct: 1256 DGTHL 1260
>sp|Q08092|CNN1_PIG Calponin-1 OS=Sus scrofa GN=CNN1 PE=2 SV=1
Length = 297
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 58 KSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIKEQRRS 117
K +++Y + +++L EW+ + N NFMD L G+ LC + S+K+ S
Sbjct: 21 KLAQKYDHQQEQELREWIEGVTGRRIGN--NFMDGLKDGIILCEFINKLQPGSVKKVNES 78
>sp|P49610|STRH_STRPN Beta-N-acetylhexosaminidase OS=Streptococcus pneumoniae serotype 4
(strain ATCC BAA-334 / TIGR4) GN=strH PE=1 SV=2
Length = 1312
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 29 YPNWHQLM-NMAQMATPTATLVETRGLRPFKSSEEYLYAMKEDL 71
Y W+QL A+ A A + + RGL+P ++ + Y K+D+
Sbjct: 818 YLKWYQLYGKFAEYANTLAAMAKERGLQPMAFNDGFYYEDKDDV 861
>sp|Q5UQU4|YR348_MIMIV Uncharacterized protein R348 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_R348 PE=4 SV=1
Length = 705
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Query: 15 YSWRDFLIQSYEIPYPNWHQLMNMAQMATPTATLVETRGLRPFKSSEEYLYAMKEDLAEW 74
Y + F SY I Y W Q N Q TLVE GL S++ Y M DL E
Sbjct: 469 YLLKKFKSASYNIYYNQWIQYKNNPQ------TLVEL-GLGLNNSNDYIRYLMTSDLNEE 521
Query: 75 LNNLYVELHMNVANFMDR 92
NLY FM+R
Sbjct: 522 QINLYNNFIDGYLFFMNR 539
>sp|B9KHN8|DNLJ_ANAMF DNA ligase OS=Anaplasma marginale (strain Florida) GN=ligA PE=3
SV=1
Length = 673
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 21 LIQSYEIPYPNWHQLMNMAQMATPTATLVETRGL-RPFKSSEEYLYAMKEDLAEWLNNLY 79
LI + Y NWHQ M T T V+ RGL SS + ++++ +L E L +L
Sbjct: 523 LIAEHYRSYKNWHQAM---LALTETHDTVQIRGLGEKSISSLKAFFSVQGNL-EVLESLS 578
Query: 80 VELHMNVANFMDRLDTGVTLCRGKSTFFKSSIKEQRRS 117
+L N+ + G + GK+ F +++ R+
Sbjct: 579 AKL--NILDEASPAQRGSSAISGKTVVFTGTLESMSRT 614
>sp|Q7YRL2|CNN1_SHEEP Calponin-1 OS=Ovis aries GN=CNN1 PE=2 SV=1
Length = 297
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 58 KSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIKEQRRS 117
K +++Y + +++L EW+ + N NFMD L G+ LC + S+K+ S
Sbjct: 21 KLAQKYDHQREQELREWIEGVTGRRIGN--NFMDGLKDGIILCEFINKLQPGSVKKVNES 78
>sp|Q08091|CNN1_MOUSE Calponin-1 OS=Mus musculus GN=Cnn1 PE=2 SV=1
Length = 297
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 58 KSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIKEQRRS 117
K +++Y + +++L EW+ + N NFMD L G+ LC + S+K+ S
Sbjct: 21 KLAQKYDHQREQELREWIEGVTGRRIGN--NFMDGLKDGIILCEFINKLQPGSVKKVNES 78
>sp|Q2HJ38|CNN1_BOVIN Calponin-1 OS=Bos taurus GN=CNN1 PE=2 SV=1
Length = 297
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 58 KSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIKEQRRS 117
K +++Y + +++L EW+ + N NFMD L G+ LC + S+K+ S
Sbjct: 21 KLAQKYDHQREQELREWIEGVTGRRIGN--NFMDGLKDGIILCEFINKLQPGSVKKVNES 78
>sp|P51911|CNN1_HUMAN Calponin-1 OS=Homo sapiens GN=CNN1 PE=1 SV=2
Length = 297
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 58 KSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIKE 113
K +++Y + +++L EW+ + N NFMD L G+ LC + S+K+
Sbjct: 21 KLAQKYDHQREQELREWIEGVTGRRIGN--NFMDGLKDGIILCEFINKLQPGSVKK 74
>sp|Q9C895|BRE1B_ARATH E3 ubiquitin-protein ligase BRE1-like 2 OS=Arabidopsis thaliana
GN=HUB2 PE=1 SV=2
Length = 900
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 34 QLMNMAQMATPTATLVETRGLRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRL 93
QL N+A + T + RGL K S+ A E+L L+ ++EL + A+ +
Sbjct: 555 QLQNLASICTRECN--DDRGLAEIKDSQRKAQAQAEELKNVLDEHFLELRVKAAHETE-- 610
Query: 94 DTGVTLCRGKSTFFKSSIKEQR 115
+ C+ + K+ I E R
Sbjct: 611 ----SACQERLATAKAEIAELR 628
>sp|Q5PBN8|DNLJ_ANAMM DNA ligase OS=Anaplasma marginale (strain St. Maries) GN=ligA PE=3
SV=1
Length = 673
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 21 LIQSYEIPYPNWHQLMNMAQMATPTATLVETRGL-RPFKSSEEYLYAMKEDLAEWLNNLY 79
L+ + Y NWHQ M T T V+ RGL SS + ++++ +L E L +L
Sbjct: 523 LVAEHYRSYKNWHQAM---LALTETHDTVQIRGLGEKSISSLKAFFSVQGNL-EVLESLS 578
Query: 80 VELHMNVANFMDRLDTGVTLCRGKSTFFKSSIKEQRRS 117
+L N+ + G + GK+ F +++ R+
Sbjct: 579 AKL--NILDEASPAQRGSSAISGKTVVFTGTLESMSRT 614
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.133 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,008,856
Number of Sequences: 539616
Number of extensions: 1679879
Number of successful extensions: 4126
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 4116
Number of HSP's gapped (non-prelim): 35
length of query: 129
length of database: 191,569,459
effective HSP length: 95
effective length of query: 34
effective length of database: 140,305,939
effective search space: 4770401926
effective search space used: 4770401926
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)