Query psy607
Match_columns 129
No_of_seqs 111 out of 127
Neff 3.2
Searched_HMMs 46136
Date Fri Aug 16 16:50:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy607.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/607hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2046|consensus 99.2 3.5E-12 7.6E-17 102.4 2.9 55 58-113 17-72 (193)
2 cd00014 CH Calponin homology d 98.9 8.9E-10 1.9E-14 74.4 3.1 47 67-114 2-50 (107)
3 smart00033 CH Calponin homolog 98.8 3.9E-09 8.4E-14 70.4 3.0 46 68-114 2-49 (103)
4 PF00307 CH: Calponin homology 98.6 1.8E-08 3.8E-13 67.9 2.3 45 68-112 1-47 (108)
5 COG5199 SCP1 Calponin [Cytoske 97.9 8.1E-06 1.8E-10 65.2 2.3 49 64-113 11-60 (178)
6 KOG0046|consensus 97.1 0.00033 7.1E-09 64.5 3.3 49 68-116 121-178 (627)
7 KOG0532|consensus 97.1 0.00055 1.2E-08 63.9 4.0 46 66-113 576-621 (722)
8 KOG2996|consensus 96.3 0.0021 4.4E-08 60.5 2.2 53 70-122 6-66 (865)
9 KOG2128|consensus 93.8 0.055 1.2E-06 54.3 3.4 49 59-109 36-85 (1401)
10 PF11971 CAMSAP_CH: CAMSAP CH 93.5 0.031 6.7E-07 39.5 0.9 29 85-113 12-40 (85)
11 COG5261 IQG1 Protein involved 92.6 0.085 1.8E-06 51.4 2.6 43 69-112 47-89 (1054)
12 KOG3631|consensus 83.4 1 2.2E-05 39.6 2.8 60 61-126 85-144 (365)
13 PF06294 DUF1042: Domain of Un 74.2 2.4 5.1E-05 32.7 2.0 40 71-112 1-40 (158)
14 KOG0046|consensus 72.0 2.3 4.9E-05 40.0 1.7 44 72-117 394-437 (627)
15 KOG3000|consensus 67.6 4.4 9.5E-05 34.9 2.4 46 69-118 18-63 (295)
16 PRK05170 hypothetical protein; 66.8 2.9 6.3E-05 33.0 1.1 45 27-75 100-144 (147)
17 PF00536 SAM_1: SAM domain (St 64.7 8.1 0.00017 24.2 2.7 33 68-102 5-37 (64)
18 cd08539 SAM_PNT-ESE-3-like Ste 61.4 9.4 0.0002 27.0 2.7 36 68-103 10-47 (74)
19 cd08757 SAM_PNT_ESE Sterile al 57.5 11 0.00023 25.4 2.4 33 68-103 7-44 (68)
20 cd08537 SAM_PNT-ESE-1-like Ste 55.0 16 0.00034 26.2 3.0 35 68-103 15-52 (78)
21 PF05247 FlhD: Flagellar trans 53.1 3.9 8.5E-05 30.4 -0.3 49 48-102 19-67 (104)
22 PF03221 HTH_Tnp_Tc5: Tc5 tran 50.3 24 0.00052 21.8 3.0 23 65-87 2-25 (66)
23 PF02198 SAM_PNT: Sterile alph 49.2 20 0.00043 24.5 2.7 36 68-103 22-57 (84)
24 PF00598 Flu_M1: Influenza Mat 48.1 19 0.00042 28.6 2.8 38 65-102 17-54 (157)
25 PF02287 Dehydratase_SU: Dehyd 47.5 14 0.00031 28.9 2.0 22 51-72 89-110 (136)
26 PRK15443 pduE propanediol dehy 47.2 17 0.00036 28.6 2.3 35 50-89 87-121 (138)
27 cd08203 SAM_PNT Sterile alpha 47.2 21 0.00046 23.7 2.5 33 68-103 7-42 (66)
28 smart00251 SAM_PNT SAM / Point 41.8 23 0.0005 24.6 2.1 33 68-103 22-57 (82)
29 smart00674 CENPB Putative DNA- 41.3 34 0.00074 21.5 2.7 23 65-87 5-28 (66)
30 cd08532 SAM_PNT-PDEF-like Ster 37.0 33 0.00071 23.9 2.3 35 68-103 15-49 (76)
31 PF06050 HGD-D: 2-hydroxygluta 34.7 63 0.0014 25.9 3.9 33 61-94 101-133 (349)
32 KOG2432|consensus 34.6 22 0.00048 33.2 1.5 46 21-96 405-451 (565)
33 cd08535 SAM_PNT-Tel_Yan Steril 34.3 41 0.00089 22.9 2.4 33 68-103 8-43 (68)
34 PRK00296 minE cell division to 33.4 45 0.00099 23.6 2.6 20 60-79 35-54 (86)
35 TIGR03191 benz_CoA_bzdO benzoy 33.4 63 0.0014 28.5 4.0 35 61-96 157-191 (430)
36 cd08536 SAM_PNT-Mae Sterile al 33.0 37 0.00079 23.0 2.0 33 68-103 7-42 (66)
37 smart00874 B5 tRNA synthetase 32.8 48 0.001 21.1 2.5 22 72-94 8-29 (71)
38 PF13427 DUF4111: Domain of un 30.5 53 0.0011 23.6 2.6 43 59-111 9-51 (106)
39 TIGR01215 minE cell division t 30.4 58 0.0013 22.8 2.7 21 59-79 33-53 (81)
40 COG5069 SAC6 Ca2+-binding acti 29.7 29 0.00063 32.8 1.4 59 55-113 114-174 (612)
41 PF05622 HOOK: HOOK protein; 28.6 35 0.00076 31.5 1.7 43 65-110 6-48 (713)
42 PF14113 DUF4285: Domain of un 28.3 36 0.00077 24.8 1.4 34 66-99 42-78 (115)
43 PF06723 MreB_Mbl: MreB/Mbl pr 28.2 54 0.0012 28.1 2.6 48 65-115 247-294 (326)
44 PF06345 Drf_DAD: DRF Autoregu 27.1 34 0.00073 17.8 0.8 12 86-97 3-14 (15)
45 cd08531 SAM_PNT-ERG_FLI-1 Ster 26.9 64 0.0014 22.3 2.4 33 68-102 10-45 (75)
46 PF13278 DUF4066: Putative ami 26.5 72 0.0016 23.0 2.7 56 63-123 74-135 (166)
47 cd08534 SAM_PNT-GABP-alpha Ste 25.4 71 0.0015 22.9 2.5 32 68-102 24-58 (89)
48 TIGR02263 benz_CoA_red_C benzo 24.3 1.3E+02 0.0027 25.8 4.2 44 61-105 137-180 (380)
49 PF13592 HTH_33: Winged helix- 24.0 82 0.0018 20.1 2.4 26 69-95 8-33 (60)
50 PF10372 YojJ: Bacterial membr 23.2 1.4E+02 0.0031 20.7 3.6 53 62-118 5-66 (70)
51 PLN02409 serine--glyoxylate am 22.5 1.7E+02 0.0036 24.6 4.5 51 30-83 7-58 (401)
52 cd08541 SAM_PNT-FLI-1 Sterile 22.2 89 0.0019 22.7 2.5 34 68-103 22-58 (91)
53 PF06395 CDC24: CDC24 Calponin 22.0 53 0.0011 23.8 1.3 22 88-109 5-26 (89)
54 PF01314 AFOR_C: Aldehyde ferr 21.7 74 0.0016 27.4 2.3 38 69-107 284-321 (382)
55 COG3058 FdhE Uncharacterized p 20.8 1.5E+02 0.0032 26.2 3.9 54 67-121 132-190 (308)
56 cd00166 SAM Sterile alpha moti 20.8 76 0.0017 18.9 1.7 33 68-102 4-36 (63)
57 cd00213 S-100 S-100: S-100 dom 20.5 1.9E+02 0.0041 18.9 3.6 37 68-104 50-88 (88)
58 cd08533 SAM_PNT-ETS-1,2 Steril 20.5 83 0.0018 21.6 2.0 32 68-102 9-43 (71)
No 1
>KOG2046|consensus
Probab=99.24 E-value=3.5e-12 Score=102.41 Aligned_cols=55 Identities=25% Similarity=0.538 Sum_probs=48.1
Q ss_pred CCcHHHhHHhHHHHHHHHHHHhccccCC-hhhHHhhhhhhhhhhhhhcccccchHHH
Q psy607 58 KSSEEYLYAMKEDLAEWLNNLYVELHMN-VANFMDRLDTGVTLCRGKSTFFKSSIKE 113 (129)
Q Consensus 58 KssekyL~aMkEDLaeWI~~Ll~Ge~i~-~DnF~e~LkdGvlLCkLAN~LqpGSV~~ 113 (129)
|+..||+..++.+|.+||..+. ....+ .+||.+.|+|||+||+|+|+|+|+++..
T Consensus 17 k~~~k~~~~~~~el~~WI~~~~-~~~~~~~~~f~~~LKDG~iLCkl~N~l~p~~~~~ 72 (193)
T KOG2046|consen 17 KIESKYDDELEKELREWIENVV-LTELPARGDFQDLLKDGVILCKLINKLYPGVVKK 72 (193)
T ss_pred HhhcccCHHHHHHHHHHHHHhh-ccCCCcccCHHHHHcchHHHHHHHHHhCcCcccc
Confidence 4578999999999999999986 55554 7789999999999999999999987764
No 2
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=98.91 E-value=8.9e-10 Score=74.37 Aligned_cols=47 Identities=26% Similarity=0.506 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHhccccC--ChhhHHhhhhhhhhhhhhhcccccchHHHH
Q psy607 67 MKEDLAEWLNNLYVELHM--NVANFMDRLDTGVTLCRGKSTFFKSSIKEQ 114 (129)
Q Consensus 67 MkEDLaeWI~~Ll~Ge~i--~~DnF~e~LkdGvlLCkLAN~LqpGSV~~~ 114 (129)
.++++.+|++.++ ++.. ..+||.+.|+||++||+|+|.+.|+.+...
T Consensus 2 ~~~~l~~Win~~l-~~~~~~~v~~~~~~l~dG~~L~~Ll~~~~p~~~~~~ 50 (107)
T cd00014 2 QKEELLRWINKVL-GEYGPVTINNFSTDLKDGIALCKLLNSLSPDLIDKK 50 (107)
T ss_pred hHHHHHHHHHHHh-ccCCCccHHHHHHHHhchHHHHHHHHHHCccccccc
Confidence 5789999999999 6666 589999999999999999999999988653
No 3
>smart00033 CH Calponin homology domain. Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.
Probab=98.79 E-value=3.9e-09 Score=70.40 Aligned_cols=46 Identities=28% Similarity=0.525 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhcccc--CChhhHHhhhhhhhhhhhhhcccccchHHHH
Q psy607 68 KEDLAEWLNNLYVELH--MNVANFMDRLDTGVTLCRGKSTFFKSSIKEQ 114 (129)
Q Consensus 68 kEDLaeWI~~Ll~Ge~--i~~DnF~e~LkdGvlLCkLAN~LqpGSV~~~ 114 (129)
++++..|++..+ +.. ...++|.+.|+||++||+|+|.+.|+++...
T Consensus 2 ~~~l~~Win~~l-~~~~~~~v~~~~~~l~dG~~L~~L~~~l~p~~i~~~ 49 (103)
T smart00033 2 EKTLLRWVNSLL-AEYGKPPVTNFSSDLSDGVALCKLLNSLSPGSVDKK 49 (103)
T ss_pred hHHHHHHHHHHc-ccCCCCcHHHHHHHHccHHHHHHHHHHHCCCcCChh
Confidence 578999999999 654 5788999999999999999999999998753
No 4
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=98.62 E-value=1.8e-08 Score=67.91 Aligned_cols=45 Identities=29% Similarity=0.611 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhccc--cCChhhHHhhhhhhhhhhhhhcccccchHH
Q psy607 68 KEDLAEWLNNLYVEL--HMNVANFMDRLDTGVTLCRGKSTFFKSSIK 112 (129)
Q Consensus 68 kEDLaeWI~~Ll~Ge--~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~ 112 (129)
++.+..||+.++... .....+|.+.|+||++||+|+|.+.|+.+.
T Consensus 1 e~~ll~Win~~l~~~~~~~~v~~~~~~l~dG~~L~~Li~~l~p~~i~ 47 (108)
T PF00307_consen 1 EKELLKWINSHLEKYGKGRRVTNFSEDLRDGVVLCKLINKLFPGTID 47 (108)
T ss_dssp HHHHHHHHHHHHTTSTTTSTCSSTSGGGTTSHHHHHHHHHHSTTSSS
T ss_pred CHHHHHHHHHHcccccCCCCcCcHHHHhcCHHHHHHHHHHHhhccch
Confidence 468999999999433 457779999999999999999999999874
No 5
>COG5199 SCP1 Calponin [Cytoskeleton]
Probab=97.86 E-value=8.1e-06 Score=65.21 Aligned_cols=49 Identities=18% Similarity=0.363 Sum_probs=42.6
Q ss_pred hHHhHHHHHHHHHHHhccccCCh-hhHHhhhhhhhhhhhhhcccccchHHH
Q psy607 64 LYAMKEDLAEWLNNLYVELHMNV-ANFMDRLDTGVTLCRGKSTFFKSSIKE 113 (129)
Q Consensus 64 L~aMkEDLaeWI~~Ll~Ge~i~~-DnF~e~LkdGvlLCkLAN~LqpGSV~~ 113 (129)
....+.++..||..++ |+++.+ .+|++-|+|||+||+.-|...|+-|.+
T Consensus 11 ~~~~~kev~~Wie~~l-~~k~~ppgdll~~lkdGv~lCril~ea~~~~I~y 60 (178)
T COG5199 11 MDKQQKEVTLWIETVL-GEKFEPPGDLLSLLKDGVRLCRILNEASPLDIKY 60 (178)
T ss_pred CHHHHHHHHHHHHHHH-HhhhCCcccHHHHHhcchHHHHHHhhcCccccee
Confidence 3455678999999999 999965 789999999999999999999987764
No 6
>KOG0046|consensus
Probab=97.15 E-value=0.00033 Score=64.49 Aligned_cols=49 Identities=20% Similarity=0.285 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhccccC---------ChhhHHhhhhhhhhhhhhhcccccchHHHHHH
Q psy607 68 KEDLAEWLNNLYVELHM---------NVANFMDRLDTGVTLCRGKSTFFKSSIKEQRR 116 (129)
Q Consensus 68 kEDLaeWI~~Ll~Ge~i---------~~DnF~e~LkdGvlLCkLAN~LqpGSV~~~~~ 116 (129)
|-.-..|||+.+.|.+. +...|++..+||++||||+|.=-||.|++..-
T Consensus 121 k~~fv~hIN~~L~~Dpdl~~~lPinp~t~~lf~~vkDGvlLcKlIN~svPdTIDERai 178 (627)
T KOG0046|consen 121 KRAFVNHINSYLEGDPDLKHLLPINPNTNDLFDLVKDGVLLCKLINLSVPDTIDERAI 178 (627)
T ss_pred HHHHHHHHHHHhcCCcchhhcCCCCCchHHHHHHhccceeeehhhcccCCCchhhhhh
Confidence 33678999999976543 44579999999999999999999999998543
No 7
>KOG0532|consensus
Probab=97.07 E-value=0.00055 Score=63.92 Aligned_cols=46 Identities=15% Similarity=0.268 Sum_probs=34.6
Q ss_pred HhHHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchHHH
Q psy607 66 AMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIKE 113 (129)
Q Consensus 66 aMkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~~ 113 (129)
++.+.|.+=|..-+ -.++..| |-.+|-|||+||+|||.|.|-||..
T Consensus 576 eL~~QLRk~iEtRL-k~sLp~D-l~aALtDGViLChLaN~lRPRSV~S 621 (722)
T KOG0532|consen 576 ELMLQLRKLIETRL-KVSLPED-LAAALTDGVILCHLANHLRPRSVAS 621 (722)
T ss_pred HHHHHHHHHHHHHh-cccCchh-HHHHhhcchhhHhhhcccCCCCccc
Confidence 44555555565555 4445555 9999999999999999999988764
No 8
>KOG2996|consensus
Probab=96.33 E-value=0.0021 Score=60.51 Aligned_cols=53 Identities=23% Similarity=0.396 Sum_probs=38.4
Q ss_pred HHHHHHHHH--hc-cccC-----ChhhHHhhhhhhhhhhhhhcccccchHHHHHHhhcCcc
Q psy607 70 DLAEWLNNL--YV-ELHM-----NVANFMDRLDTGVTLCRGKSTFFKSSIKEQRRSYCPEI 122 (129)
Q Consensus 70 DLaeWI~~L--l~-Ge~i-----~~DnF~e~LkdGvlLCkLAN~LqpGSV~~~~~~~~p~~ 122 (129)
.++.||-.. +| .-.+ .+=.|-.+|+|||+||||+|+|-|++|.----++-|..
T Consensus 6 qCarWLidckVLptnhrvtw~~a~v~dlAq~LRDGvLLCqLlnnL~p~sIdlkeIn~rpQm 66 (865)
T KOG2996|consen 6 QCARWLIDCKVLPTNHRVTWDSAQVFDLAQALRDGVLLCQLLNNLVPHSIDLKEINLRPQM 66 (865)
T ss_pred HHHHHHhhccccCCCcccccCcchHHHHHHHHhhhhHHHHHHhhcCCCcccHHHhhcCCCc
Confidence 577888653 33 3323 23368899999999999999999999986555555543
No 9
>KOG2128|consensus
Probab=93.81 E-value=0.055 Score=54.26 Aligned_cols=49 Identities=20% Similarity=0.328 Sum_probs=39.6
Q ss_pred CcHHHhHHhHHHHHHHHHHHhccccCChh-hHHhhhhhhhhhhhhhcccccc
Q psy607 59 SSEEYLYAMKEDLAEWLNNLYVELHMNVA-NFMDRLDTGVTLCRGKSTFFKS 109 (129)
Q Consensus 59 ssekyL~aMkEDLaeWI~~Ll~Ge~i~~D-nF~e~LkdGvlLCkLAN~LqpG 109 (129)
.+=+||= -=||...||+..+ |+.+.+. .|.+.|+|||+|-+|+|.++|-
T Consensus 36 vaYeyLC-r~eE~k~W~e~cl-~edL~pttele~~LRNGV~LAkL~~~f~PD 85 (1401)
T KOG2128|consen 36 VAYEYLC-RVEEAKRWIEECL-GEDLPPTTELEEGLRNGVYLAKLGQFFAPD 85 (1401)
T ss_pred HHHHHHH-hHHHHHHHHHHHh-cccCCCchHHHHHhhhhhHHHHHHhhcCCc
Confidence 3444542 2367899999999 9998554 6999999999999999999993
No 10
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins.
Probab=93.52 E-value=0.031 Score=39.46 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=26.4
Q ss_pred ChhhHHhhhhhhhhhhhhhcccccchHHH
Q psy607 85 NVANFMDRLDTGVTLCRGKSTFFKSSIKE 113 (129)
Q Consensus 85 ~~DnF~e~LkdGvlLCkLAN~LqpGSV~~ 113 (129)
.++||...|.||++||.|++...|+.+..
T Consensus 12 ~v~dl~~~l~DG~~Lc~Lih~Y~P~~l~~ 40 (85)
T PF11971_consen 12 PVEDLTQDLSDGRALCALIHFYCPQLLPL 40 (85)
T ss_pred chhhhhhhhccHHHHHHHHHHhCcceecH
Confidence 67899999999999999999999998854
No 11
>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]
Probab=92.63 E-value=0.085 Score=51.38 Aligned_cols=43 Identities=21% Similarity=0.320 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchHH
Q psy607 69 EDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIK 112 (129)
Q Consensus 69 EDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~ 112 (129)
+|.-.||..++ ++.++...|.|.|+|||.|-+|..+++|..++
T Consensus 47 ~EaK~WIee~~-~~~l~~~~fe~slRnGV~La~l~q~f~pd~~~ 89 (1054)
T COG5261 47 SEAKIWIEEVI-EEALPELCFEDSLRNGVFLAKLTQRFNPDLTT 89 (1054)
T ss_pred HHHHHHHHHHh-ccCCchhhHHHHHhccchHHHHHHHhCCCcee
Confidence 57789999999 99999999999999999999999999998764
No 12
>KOG3631|consensus
Probab=83.39 E-value=1 Score=39.62 Aligned_cols=60 Identities=17% Similarity=0.238 Sum_probs=46.2
Q ss_pred HHHhHHhHHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchHHHHHHhhcCccccCC
Q psy607 61 EEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIKEQRRSYCPEIADGE 126 (129)
Q Consensus 61 ekyL~aMkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~~~~~~~~p~~a~~~ 126 (129)
..-+.++..=|.+|||.++.++.|=+-.+.|.|=||.||-+|-.++..-- -.-||++|++
T Consensus 85 DpK~~el~kvLi~WiN~~L~~erIvVr~LeEDlfDGqilqkL~ekL~~~k------lev~evtqse 144 (365)
T KOG3631|consen 85 DPKFEELVKVLIDWINDVLVPERIVVRSLEEDLFDGQILQKLFEKLAALK------LEVAEVTQSE 144 (365)
T ss_pred ChhHHHHHHHHHHHHHHhhcchhhhHHhhHHhhhhhHHHHHHHHHHHhhh------ccchhhhhhh
Confidence 33445666778999999998999988899999999999999988876322 2256666654
No 13
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function.; PDB: 2EE7_A.
Probab=74.21 E-value=2.4 Score=32.70 Aligned_cols=40 Identities=18% Similarity=0.368 Sum_probs=28.9
Q ss_pred HHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchHH
Q psy607 71 LAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIK 112 (129)
Q Consensus 71 LaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~ 112 (129)
|..||+. + .......|+-..+.||++++.+.....|..|+
T Consensus 1 l~~WL~~-l-~ls~~~~n~~rDfsdG~lvAEIl~~y~p~~vd 40 (158)
T PF06294_consen 1 LLKWLQS-L-DLSRPPKNIRRDFSDGYLVAEILSRYYPKLVD 40 (158)
T ss_dssp HHHHHHH-S---S--SS-HHHHHTTSHHHHHHHHHH-TTT--
T ss_pred ChHHHhc-C-CCCCCCCchHHHcccccHHHHHHHHHCCCCcc
Confidence 5689999 5 67888899999999999999999999888776
No 14
>KOG0046|consensus
Probab=72.05 E-value=2.3 Score=40.00 Aligned_cols=44 Identities=20% Similarity=0.332 Sum_probs=38.1
Q ss_pred HHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchHHHHHHh
Q psy607 72 AEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIKEQRRS 117 (129)
Q Consensus 72 aeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~~~~~~ 117 (129)
.-|+|++ |...-..++++-|+||.||-++-.+|.||+|..-+.+
T Consensus 394 r~WmNSl--gv~p~vn~~f~Dl~dglVllq~~dki~pg~Vnwk~vn 437 (627)
T KOG0046|consen 394 RLWMNSL--GVNPYVNNLFEDLRDGLVLLQLYDKVSPGSVNWKHVN 437 (627)
T ss_pred HHHHHhc--CCcHHHHHHHHhhhhhhHHHHHHHHccCCccchhhcc
Confidence 5699987 4666778999999999999999999999999876655
No 15
>KOG3000|consensus
Probab=67.59 E-value=4.4 Score=34.88 Aligned_cols=46 Identities=22% Similarity=0.551 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchHHHHHHhh
Q psy607 69 EDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIKEQRRSY 118 (129)
Q Consensus 69 EDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~~~~~~~ 118 (129)
.|++.|+|.++ ..+++ =.|.|.+|..-|++.-.|-|++|.--++.|
T Consensus 18 ~E~laW~N~~l-~~n~~---kIEe~~tGaaycqlmd~l~p~~i~lkkVkf 63 (295)
T KOG3000|consen 18 LEILAWINDLL-QLNLT---KIEELCTGAAYCQLMDMLFPPDIPLKKVKF 63 (295)
T ss_pred HHHHHHHHhhh-hcchh---hhhhhcccchhhhhhhhccCCccccccccc
Confidence 39999999999 55542 468899999999999999998876555444
No 16
>PRK05170 hypothetical protein; Provisional
Probab=66.81 E-value=2.9 Score=32.95 Aligned_cols=45 Identities=20% Similarity=0.370 Sum_probs=35.1
Q ss_pred cCCCchhhccCcccccchhhhhhhhhccCCCCCcHHHhHHhHHHHHHHH
Q psy607 27 IPYPNWHQLMNMAQMATPTATLVETRGLRPFKSSEEYLYAMKEDLAEWL 75 (129)
Q Consensus 27 ~~~p~~~~~~~~~~~a~~~~~~~~~rsirpfKssekyL~aMkEDLaeWI 75 (129)
-++|.||-|.. | |+.+++.+..|+|..-++|....++.+-+.+|.
T Consensus 100 ~~Lp~WHpLis-G---~~~~vh~ag~Sv~g~~v~E~~~~d~ed~iv~w~ 144 (147)
T PRK05170 100 KDLPSWHPLIT-G---SKEAVHKAGISVRGRVVSESEVDDWEDHIVNWP 144 (147)
T ss_pred CCCCccccccc-C---CHHHHHHcCCcccCeeeccCccchHHHHHhcCc
Confidence 47899999986 4 899999999999998887776655555555554
No 17
>PF00536 SAM_1: SAM domain (Sterile alpha motif); InterPro: IPR021129 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents type 1 SAM domains. ; PDB: 2KIV_A 3HIL_B 3KKA_A 3K1R_B 3SEN_B 3SEI_B 1V85_A 2KE7_A 2EAM_A 1WWV_A ....
Probab=64.68 E-value=8.1 Score=24.18 Aligned_cols=33 Identities=33% Similarity=0.473 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhh
Q psy607 68 KEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRG 102 (129)
Q Consensus 68 kEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkL 102 (129)
.+++.+||+.+ |.+==.++|....-||-.|+.|
T Consensus 5 ~~~V~~WL~~~--~l~~y~~~F~~~~i~g~~L~~l 37 (64)
T PF00536_consen 5 VEDVSEWLKSL--GLEQYAENFEKNYIDGEDLLSL 37 (64)
T ss_dssp HHHHHHHHHHT--TGGGGHHHHHHTTSSHHHHTTS
T ss_pred HHHHHHHHHHC--CCHHHHHHHHcCCchHHHHHhc
Confidence 46899999994 5555567888888889888876
No 18
>cd08539 SAM_PNT-ESE-3-like Sterile alpha motif (SAM)/Pointed domain of ESE-3 like ETS transcriptional regulators. SAM Pointed domain of ESE-3-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. The ESE-3 transcriptional activator is involved in regulation of glandular epithelium differentiation through the MAP kinase signaling cascade. It is found to be expressed in glandular epithelium of prostate, pancreas, salivary gland, and trachea. Additionally, ESE-3 is differentially expressed during monocyte-derived dendritic cells development. DNA binding consensus motif for ESE-3 consists of purine-rich GGAA/T core sequence. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=61.45 E-value=9.4 Score=26.95 Aligned_cols=36 Identities=28% Similarity=0.404 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhc--cccCChhhHHhhhhhhhhhhhhh
Q psy607 68 KEDLAEWLNNLYV--ELHMNVANFMDRLDTGVTLCRGK 103 (129)
Q Consensus 68 kEDLaeWI~~Ll~--Ge~i~~DnF~e~LkdGvlLCkLA 103 (129)
++++.+||.-... ..+....+|..=.=||--||.++
T Consensus 10 k~~V~~WL~~~~~~~~~~~~~i~~~~F~MnG~~LC~ms 47 (74)
T cd08539 10 KYQVWEWLQHLLDTNQLDASCIPFQEFDINGEHLCSMS 47 (74)
T ss_pred HHHHHHHHHHHHHHcCCCcccccHHHcCCChHHHHccC
Confidence 5789999999853 22222224555578999999875
No 19
>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators. SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.
Probab=57.51 E-value=11 Score=25.45 Aligned_cols=33 Identities=33% Similarity=0.565 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhc--ccc---CChhhHHhhhhhhhhhhhhh
Q psy607 68 KEDLAEWLNNLYV--ELH---MNVANFMDRLDTGVTLCRGK 103 (129)
Q Consensus 68 kEDLaeWI~~Ll~--Ge~---i~~DnF~e~LkdGvlLCkLA 103 (129)
++++++||.-... +.+ ++.++| --||--||.+.
T Consensus 7 ~~~V~~Wl~w~~~e~~l~~~~i~~~~F---~m~Gk~LC~ms 44 (68)
T cd08757 7 KNDVLEWLQFVAEQNKLDAECISFQKF---NIDGQTLCSMT 44 (68)
T ss_pred HHHHHHHHHHHHHHcCCCCCcCCcccc---CCCHHHHHcCC
Confidence 5789999986641 223 456677 56999999874
No 20
>cd08537 SAM_PNT-ESE-1-like Sterile alpha motif (SAM)/Pointed domain of ESE-1 like ETS transcriptional regulators. SAM Pointed domain of ESE-1-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. SAM Pointed domain of ESE-1 provides a potential docking site for signaling kinase Pak1 in humans. ESE-1 factors are involved in regulation of gene expression in different types of epithelial cells. ESE-1 is expressed in many different organs including intestine, stomach, pancreas, lungs, kidneys, and prostate. The DNA binding consensus motif for ESE-1 consists of a purine-rich GGA[AT] core sequence. The expression profile of these factors is altered in epithelial cancers if compared to normal tissues. Members of this subfamily are potential targets for cancer therapy.
Probab=55.03 E-value=16 Score=26.17 Aligned_cols=35 Identities=26% Similarity=0.410 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhccc---cCChhhHHhhhhhhhhhhhhh
Q psy607 68 KEDLAEWLNNLYVEL---HMNVANFMDRLDTGVTLCRGK 103 (129)
Q Consensus 68 kEDLaeWI~~Ll~Ge---~i~~DnF~e~LkdGvlLCkLA 103 (129)
|.++++||.-.. +. ++..-+|..-.=||--||.++
T Consensus 15 k~qVleWL~~~~-e~n~~dl~~v~f~~F~MnG~~LC~l~ 52 (78)
T cd08537 15 KTQVLEWISYHV-EKNKYDASSIDFSRCDMDGATLCNCA 52 (78)
T ss_pred HHHHHHHHHHHH-HhccCCcccCCHHHhCCchHHHHccC
Confidence 568899999888 33 222223444477999999985
No 21
>PF05247 FlhD: Flagellar transcriptional activator (FlhD); InterPro: IPR007911 FlhD combines with FlhC to form a regulatory complex in Escherichia coli. This complex has been shown to be a global regulator involved in many cellular processes as well as a flagellar transcriptional activator []. The FlhD protein is dimeric. The dimer is tightly coupled, with an intimate contact surface, implying that the dimer does not easily dissociate. The FlhD monomer is predominantly alpha-helical []. ; GO: 0003677 DNA binding, 0009296 flagellum assembly, 0045893 positive regulation of transcription, DNA-dependent; PDB: 2AVU_C 1G8E_A.
Probab=53.09 E-value=3.9 Score=30.35 Aligned_cols=49 Identities=24% Similarity=0.361 Sum_probs=29.7
Q ss_pred hhhhhccCCCCCcHHHhHHhHHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhh
Q psy607 48 LVETRGLRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRG 102 (129)
Q Consensus 48 ~~~~rsirpfKssekyL~aMkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkL 102 (129)
++..|=||--|....+-.-+-+|+++||..+.+ .....-=.++++||++
T Consensus 19 lLAQrlir~D~~~A~frLGis~e~ad~L~~Ls~------~Ql~kLA~sn~Llcrf 67 (104)
T PF05247_consen 19 LLAQRLIREDKAEAMFRLGISEEVADLLASLSP------AQLVKLASSNQLLCRF 67 (104)
T ss_dssp HHHHHHHHH-HHHHHHHHT--HHHHHHHHH--H------HHHHHHHSSSS-SEEE
T ss_pred HHHHHHHHcCHHHHHHHcCCCHHHHHHHHcCCH------HHHHHHHccCCeeeee
Confidence 346666676666777778889999999999982 3345555567777764
No 22
>PF03221 HTH_Tnp_Tc5: Tc5 transposase DNA-binding domain; InterPro: IPR006600 This entry represents a DNA-binding helix-turn-helix domain found in the pogo family of transposable elements, the centromere protein Cenp-B, and yeast PCD2. There is extensive sequence similarity between Cenp-B and transposase proteins encoded by the pogo superfamily of transposable elements, which includes the human Tigger and Jerky elements []. The HTH domain is composed of three alpha-helices, with the second and third helices connected via a turn comprise the helix-turn-helix motif. Helix 3 is termed the recognition helix as it binds the DNA major groove, as in other HTHs []. This conserved DNA-binding domain is found in the following proteins: Cenp-B (major centromere autoantigen B or centromere protein B), which appears to organise arrays of centromere satellite DNA into a higher order structure that then direct centromere formation and kinetochore assembly in mammalian chromosomes. The N terminus of Cenp-B contains two DNA-binding HTH domains, which bind to adjacent major grooves of DNA: a psq-type HTH domain followed by a CenpB-type HTH domain, which together bind specifically to the Cenp-B box, which occurs in alpha-satellite DNA in human centromeres []. Pogo family transposable elements includes both Tigger and Jerky elements []. Pogo contains two open reading frames flanked by inverted repeats. The N-terminal region of pogo transposase contains a Cenp-B-type HTH DNA-binding domain []. Mammalian jerky protein, involved in epileptic seizures in mice []. PDC2 (Pyruvate DeCarboxylase 2), which is a transcription factor required for the synthesis of the glycolytic enzyme pyruvate decarboxylase, required for high level expression of both the THI and the PDC genes. PDC2 may be important for a high basal level of PDC gene expression or play a positive role in the autoregulation control of PDC1 and PDC5 [, ]. ; PDB: 1HLV_A 1IUF_A.
Probab=50.26 E-value=24 Score=21.76 Aligned_cols=23 Identities=13% Similarity=0.390 Sum_probs=15.8
Q ss_pred HHhHHHHHHHHHHHhc-cccCChh
Q psy607 65 YAMKEDLAEWLNNLYV-ELHMNVA 87 (129)
Q Consensus 65 ~aMkEDLaeWI~~Ll~-Ge~i~~D 87 (129)
.++++.|.+||..+.. |.+++.+
T Consensus 2 ~~~E~~L~~wi~~~~~~g~~vt~~ 25 (66)
T PF03221_consen 2 PELEKALVEWIKRMRRKGFPVTRE 25 (66)
T ss_dssp HHHHHHHHHHHHHHCGCT---SCH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCHH
Confidence 4678899999999985 6667544
No 23
>PF02198 SAM_PNT: Sterile alpha motif (SAM)/Pointed domain; InterPro: IPR003118 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain IPR000418 from INTERPRO has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. This entry describes the highly conserved PNT (or Pointed) domain which is found within a subset of the ETs domain (IPR000418 from INTERPRO ), including mammalian Ets-1, Ets-2, Erg, Fli-1, GABPalpha, and Tel, as well as Drosophila Pnt-P2 and Yan. The PNT domain (IPR001660 from INTERPRO ) through a common tertiary arrangement of four alpha-helices. A role in protein-protein association has been established for the PNT domain [, ].; GO: 0043565 sequence-specific DNA binding, 0005634 nucleus; PDB: 1SXE_A 1SXD_A 2KMD_A 2JV3_A 2E8P_A 1SV4_B 1SV0_B 1LKY_F 1JI7_B 2DKX_A ....
Probab=49.20 E-value=20 Score=24.54 Aligned_cols=36 Identities=28% Similarity=0.454 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhh
Q psy607 68 KEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGK 103 (129)
Q Consensus 68 kEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLA 103 (129)
++|+.+||.-+...-++..-+|..-=-||.-||.+-
T Consensus 22 ~~~V~~Wl~w~~~~f~l~~~~~~~f~~~G~~Lc~lt 57 (84)
T PF02198_consen 22 KEDVLQWLRWVVREFDLPAIDFSRFNMNGRELCSLT 57 (84)
T ss_dssp HHHHHHHHHHHHHHTT-SSCHGGGGTS-HHHHHHSH
T ss_pred HHHHHHHHHHHHHhcCCCcCchhccCCCHHHHHHcC
Confidence 578999997665222222223333345899999874
No 24
>PF00598 Flu_M1: Influenza Matrix protein (M1); InterPro: IPR001561 Matrix protein (M1) of Influenza virus is a bifunctional membrane/RNA-binding protein that mediates the encapsidation of RNA-nucleoprotein cores into the membrane envelope. It is therefore required that M1 binds both membrane and RNA simultaneously []. M1 is comprised of two domains connected by a linker sequence. The N-terminal domain has a multi-helical structure that can be divided into two subdomains []. The C-terminal domain also contains alpha-helical structure.; GO: 0003723 RNA binding, 0005198 structural molecule activity; PDB: 3MD2_C 4D9J_L 1EA3_B 1AA7_A 3VDX_C 1HHI_F 2Z16_B.
Probab=48.05 E-value=19 Score=28.62 Aligned_cols=38 Identities=13% Similarity=0.275 Sum_probs=25.7
Q ss_pred HHhHHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhh
Q psy607 65 YAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRG 102 (129)
Q Consensus 65 ~aMkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkL 102 (129)
-+.|.|+++=|..+++|.+.+-|..||.||+--+|--+
T Consensus 17 gp~Ka~~a~kLe~vF~Gkn~DLd~llEWlK~r~~Ls~l 54 (157)
T PF00598_consen 17 GPLKAEIAQKLEDVFAGKNTDLDSLLEWLKNRPILSPL 54 (157)
T ss_dssp SHHHHHHHHHHHHHHTTS---HHHHHHHHHT-SSS-HH
T ss_pred CCChHHHHHHHHHHhcccccCHHHHHHHHhcCcccchH
Confidence 35666777777788889999999999999996555433
No 25
>PF02287 Dehydratase_SU: Dehydratase small subunit; InterPro: IPR003207 This family contains the small subunit of the trimeric diol dehydratases and glycerol dehydratases. These enzymes are produced by some enterobacteria in response to growth substances [, ].; PDB: 1IWP_M 1MMF_M 1UC4_M 1EEX_M 3AUJ_G 1IWB_M 1DIO_G 1UC5_G 1EGM_G 1EGV_M ....
Probab=47.55 E-value=14 Score=28.93 Aligned_cols=22 Identities=32% Similarity=0.679 Sum_probs=16.3
Q ss_pred hhccCCCCCcHHHhHHhHHHHH
Q psy607 51 TRGLRPFKSSEEYLYAMKEDLA 72 (129)
Q Consensus 51 ~rsirpfKssekyL~aMkEDLa 72 (129)
--.+|||+|+.+.|.+++++|.
T Consensus 89 YnaLRP~RStK~ELl~iA~eLe 110 (136)
T PF02287_consen 89 YNALRPYRSTKQELLAIADELE 110 (136)
T ss_dssp HHHHSTTS--HHHHHHHHHHHH
T ss_pred HHhhCCCcccHHHHHHHHHHHH
Confidence 3456999999999998888864
No 26
>PRK15443 pduE propanediol dehydratase small subunit; Provisional
Probab=47.19 E-value=17 Score=28.62 Aligned_cols=35 Identities=31% Similarity=0.523 Sum_probs=24.6
Q ss_pred hhhccCCCCCcHHHhHHhHHHHHHHHHHHhccccCChhhH
Q psy607 50 ETRGLRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANF 89 (129)
Q Consensus 50 ~~rsirpfKssekyL~aMkEDLaeWI~~Ll~Ge~i~~DnF 89 (129)
---.+|||+|..+.|.+|+.+|. .-| +-++.+.-+
T Consensus 87 iYnaLRP~RStk~ELl~iA~eLe----~~Y-~A~~cA~~V 121 (138)
T PRK15443 87 IYNALRPYRSTKEELLAIADELE----NKY-QAKICAAFV 121 (138)
T ss_pred HHHhhCCCcccHHHHHHHHHHHH----HHh-CCHHHHHHH
Confidence 34567999999999998888865 445 555544433
No 27
>cd08203 SAM_PNT Sterile alpha motif (SAM)/Pointed domain. Sterile alpha motif (SAM)/Pointed domain is found in about 40% of transcriptional regulators of ETS family (initially named for Erythroblastosis virus, E26-E Twenty Six). SAM Pointed domain containing proteins of this family additionally have C-terminal ETS DNA-binding domain. In a few cases, SAM Pointed domain appears as a single domain protein. Members of this group are mostly involved in regulation of embryonic development and growth control in eukaryotes. SAM Pointed domains mediate protein-protein interactions. Depending on the subgroup, they can interact with other SAM Pointed domains forming homo or hetero dimers/oligomers and/or they can recruit a protein kinase to its target which can be the SAM Pointed domain containing protein itself or another protein that has no kinase docking site. Thus, SAM Pointed domains participate in transcriptional regulation and signal transduction. Some genes coding ETS family transcripti
Probab=47.17 E-value=21 Score=23.70 Aligned_cols=33 Identities=27% Similarity=0.467 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhc--ccc-CChhhHHhhhhhhhhhhhhh
Q psy607 68 KEDLAEWLNNLYV--ELH-MNVANFMDRLDTGVTLCRGK 103 (129)
Q Consensus 68 kEDLaeWI~~Ll~--Ge~-i~~DnF~e~LkdGvlLCkLA 103 (129)
++++..||.-... +.+ ++.++| =-||.-||.+.
T Consensus 7 ~~~V~~Wl~w~~~~f~L~~~~~~~F---~m~G~~Lc~ls 42 (66)
T cd08203 7 KEHVLQWLEWAVKEFSLPPIDFSKF---NMNGKELCLLT 42 (66)
T ss_pred HHHHHHHHHHHHHhcCCCCCChhhc---CCCHHHHHhCC
Confidence 5788999988773 222 355666 56999999974
No 28
>smart00251 SAM_PNT SAM / Pointed domain. A subfamily of the SAM domain
Probab=41.77 E-value=23 Score=24.64 Aligned_cols=33 Identities=24% Similarity=0.512 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhccccC---ChhhHHhhhhhhhhhhhhh
Q psy607 68 KEDLAEWLNNLYVELHM---NVANFMDRLDTGVTLCRGK 103 (129)
Q Consensus 68 kEDLaeWI~~Ll~Ge~i---~~DnF~e~LkdGvlLCkLA 103 (129)
++++.+||.-+...-++ +.++| --||--||.+.
T Consensus 22 ~~~V~~Wl~w~~~ef~L~~~~~~~f---~m~G~~Lc~ls 57 (82)
T smart00251 22 EDHVLEWLEWAVKEFSLSPIDFSKF---DMSGKELCSMS 57 (82)
T ss_pred HHHHHHHHHHHHHhcCCCCCCcccC---CCCHHHHHcCC
Confidence 57899999988832223 34444 45999999874
No 29
>smart00674 CENPB Putative DNA-binding domain in centromere protein B, mouse jerky and transposases.
Probab=41.28 E-value=34 Score=21.48 Aligned_cols=23 Identities=13% Similarity=0.263 Sum_probs=18.0
Q ss_pred HHhHHHHHHHHHHHhc-cccCChh
Q psy607 65 YAMKEDLAEWLNNLYV-ELHMNVA 87 (129)
Q Consensus 65 ~aMkEDLaeWI~~Ll~-Ge~i~~D 87 (129)
..+++.|.+||..... |.+++..
T Consensus 5 ~~~E~~L~~wi~~~~~~g~~it~~ 28 (66)
T smart00674 5 ALLEKALYEWILRQEALGIPISGE 28 (66)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHH
Confidence 5678899999999875 7777544
No 30
>cd08532 SAM_PNT-PDEF-like Sterile alpha motif (SAM)/Pointed domain of prostate-derived ETS factor. SAM Pointed domain of PDEF-like (Prostate-Derived ETS Factor) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. In human males this activator is highly expressed in the prostate gland and enhances androgen-mediated activation of the PSA promoter though interaction with the DNA binding domain of androgen receptor. PDEF may play a role in prostate cancer development as well as in goblet cell formation and mucus production in the epithelial lining of respiratory and intestinal tracts.
Probab=37.00 E-value=33 Score=23.90 Aligned_cols=35 Identities=14% Similarity=0.086 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhh
Q psy607 68 KEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGK 103 (129)
Q Consensus 68 kEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLA 103 (129)
++++..||.-....=+++. ++..---||.-||.+.
T Consensus 15 ~~~V~~WL~w~~~ef~L~~-~~~~F~mnG~~LC~ls 49 (76)
T cd08532 15 PANVQKWLLWTEHQYRLPP-PPRCFELNGKDLCALS 49 (76)
T ss_pred HHHHHHHHHHHHHHhCCCC-chhcCCCCHHHHHcCC
Confidence 4678888877663222333 3333356999999874
No 31
>PF06050 HGD-D: 2-hydroxyglutaryl-CoA dehydratase, D-component ; InterPro: IPR010327 Degradation of glutamate via the hydroxyglutarate pathway involves the syn-elimination of water from 2-hydroxyglutaryl-CoA. This anaerobic process is catalysed by 2-hydroxyglutaryl-CoA dehydratase, an enzyme with two components (A and D) that reversibly associate during reaction cycles. This component contains one non-reducible [4Fe-4S]2+ cluster and a reduced riboflavin 5'-monophosphate [].; PDB: 3O3O_B 3O3N_D 3O3M_D.
Probab=34.69 E-value=63 Score=25.87 Aligned_cols=33 Identities=15% Similarity=0.355 Sum_probs=23.7
Q ss_pred HHHhHHhHHHHHHHHHHHhccccCChhhHHhhhh
Q psy607 61 EEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLD 94 (129)
Q Consensus 61 ekyL~aMkEDLaeWI~~Ll~Ge~i~~DnF~e~Lk 94 (129)
-+|....-.++..||+..+ |.+++.|.|-+.++
T Consensus 101 ~~y~~~ql~~li~~Le~~~-G~k~~~~~L~~~~~ 133 (349)
T PF06050_consen 101 VDYLAEQLKDLIPFLEEIT-GRKIDEDKLREAIE 133 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TS---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc-CCcccHHHHHHHHH
Confidence 3677777778999999999 99999998755544
No 32
>KOG2432|consensus
Probab=34.62 E-value=22 Score=33.22 Aligned_cols=46 Identities=26% Similarity=0.505 Sum_probs=33.6
Q ss_pred hhhhcccCCCchhhccCcccccchhhhhhhhhccCCCCCcHHHhHHhHHHHHHHHHHHhccccCChhhHHhhhhh-h
Q psy607 21 LIQSYEIPYPNWHQLMNMAQMATPTATLVETRGLRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDT-G 96 (129)
Q Consensus 21 ~~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~rsirpfKssekyL~aMkEDLaeWI~~Ll~Ge~i~~DnF~e~Lkd-G 96 (129)
|||||-||+++..++.+| .++|-|||+.-. +..+.+|.|+..|+. |
T Consensus 405 lt~~f~~p~~~Y~a~l~p------------qk~isP~~s~p~------------------~~sF~~defl~~le~~G 451 (565)
T KOG2432|consen 405 LTQSFMIPLERYMASLMP------------QKDISPFKSPPN------------------LNSFKLDEFLGTLEKAG 451 (565)
T ss_pred hccceeecchHHHHhhCC------------ccCCCcccCCCc------------------ccccCHHHHHHHHhhcC
Confidence 689999999999666555 467888887643 345567777777776 5
No 33
>cd08535 SAM_PNT-Tel_Yan Sterile alpha motif (SAM)/Pointed domain of Tel/Yan protein. SAM Pointed domain of Tel (Translocation, Ets, Leukemia)/Yan subfamily of ETS transcriptional repressors is a protein-protein interaction domain. SAM Pointed domains of this type of regulators can interact with each other, forming head-to-tail homodimers or homooligomers, and/or interact with SAM Pointed domains of another subfamily of ETS factors forming heterodimers. The oligomeric form is able to block transcription of target genesand is involved in MAPK signaling. They participate in regulation of different processes during embryo development including hematopoietic differentiation and eye development. Tel/Yan transcriptional factors are frequent targets of chromosomal translocations resulting in fusions of SAM domain with new neighboring genes. Such chimeric proteins were found in different tumors. Members of this subfamily are potential targets for cancer therapy.
Probab=34.30 E-value=41 Score=22.89 Aligned_cols=33 Identities=24% Similarity=0.450 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhc--cc-cCChhhHHhhhhhhhhhhhhh
Q psy607 68 KEDLAEWLNNLYV--EL-HMNVANFMDRLDTGVTLCRGK 103 (129)
Q Consensus 68 kEDLaeWI~~Ll~--Ge-~i~~DnF~e~LkdGvlLCkLA 103 (129)
+++++.||.-... +. +++.++| --||--||.+.
T Consensus 8 ~~~V~~WL~wa~~ef~L~~i~~~~F---~mnGk~LC~ls 43 (68)
T cd08535 8 RDDVLQWLRWAENEFSLPPIDSNTF---EMNGKALCLLT 43 (68)
T ss_pred HHHHHHHHHHHHHhcCCCCCChhcc---CCCHHHHhcCC
Confidence 5688888877663 22 2455666 47999999974
No 34
>PRK00296 minE cell division topological specificity factor MinE; Reviewed
Probab=33.44 E-value=45 Score=23.64 Aligned_cols=20 Identities=15% Similarity=0.419 Sum_probs=18.0
Q ss_pred cHHHhHHhHHHHHHHHHHHh
Q psy607 60 SEEYLYAMKEDLAEWLNNLY 79 (129)
Q Consensus 60 sekyL~aMkEDLaeWI~~Ll 79 (129)
.-.|+..|++|+.++|++-.
T Consensus 35 ~p~~l~~lk~dIl~VIsKY~ 54 (86)
T PRK00296 35 EPDYLPQLRKEILEVIAKYV 54 (86)
T ss_pred CHHHHHHHHHHHHHHHHHhe
Confidence 45699999999999999977
No 35
>TIGR03191 benz_CoA_bzdO benzoyl-CoA reductase, bzd-type, O subunit. Members of this family are the O subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=33.38 E-value=63 Score=28.47 Aligned_cols=35 Identities=11% Similarity=0.162 Sum_probs=29.9
Q ss_pred HHHhHHhHHHHHHHHHHHhccccCChhhHHhhhhhh
Q psy607 61 EEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTG 96 (129)
Q Consensus 61 ekyL~aMkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdG 96 (129)
-+|....=+++.++|++++ |.+||.|.|.+++++-
T Consensus 157 ~~Y~~~ql~~l~~~LEe~t-G~kit~e~L~eaI~n~ 191 (430)
T TIGR03191 157 LDYVANQLHDGIEFVEKAS-GRKCDDELFIKAIKNE 191 (430)
T ss_pred HHHHHHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHH
Confidence 4577777778999999999 9999999999998853
No 36
>cd08536 SAM_PNT-Mae Sterile alpha motif (SAM)/Pointed domain of Mae protein homolog. Mae (Modulator of the Activity of ETS) subfamily represents a group of SAM Pointed monodomain proteins. SAM Pointed domain is a protein-protein interaction domain. It can interact with other SAM pointed domains forming head-to-tail heterodimers and also provides a kinase docking site. For example, in Drosophila Mae is required for facilitating phosphorylation of the Yan factor and for blocking phosphorylation of the ETS-2 regulator. Mae interacts with the SAM Pointed domains of Yan and ETS-2. Binding enhances access of the kinase to the Yan phosphorylation site by providing a kinase docking site, or inhibits phosphorylation of ETS-2 by blocking its docking site. This type of factors participates in regulation of kinase signaling particularly during embryogenesis.
Probab=33.03 E-value=37 Score=22.96 Aligned_cols=33 Identities=24% Similarity=0.497 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhc--ccc-CChhhHHhhhhhhhhhhhhh
Q psy607 68 KEDLAEWLNNLYV--ELH-MNVANFMDRLDTGVTLCRGK 103 (129)
Q Consensus 68 kEDLaeWI~~Ll~--Ge~-i~~DnF~e~LkdGvlLCkLA 103 (129)
++++..|+.-... +.+ ++.++| . -||--||.+.
T Consensus 7 ~~~V~~WL~w~~~ef~L~~~~~~~F-~--m~Gk~LC~ls 42 (66)
T cd08536 7 REHVRTWLRWVSARYQLEVVDLDKF-L--MNGKGLCLMS 42 (66)
T ss_pred HHHHHHHHHHHHHHhCCCCCCcccc-C--CCHHHHHcCC
Confidence 4678888877663 333 366677 2 4999999873
No 37
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=32.77 E-value=48 Score=21.13 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=16.5
Q ss_pred HHHHHHHhccccCChhhHHhhhh
Q psy607 72 AEWLNNLYVELHMNVANFMDRLD 94 (129)
Q Consensus 72 aeWI~~Ll~Ge~i~~DnF~e~Lk 94 (129)
.+++++++ |.+++.+...+.|+
T Consensus 8 ~~~i~~ll-G~~i~~~ei~~~L~ 29 (71)
T smart00874 8 RERINRLL-GLDLSAEEIEEILK 29 (71)
T ss_pred HHHHHHHH-CCCCCHHHHHHHHH
Confidence 46789999 99998776655554
No 38
>PF13427 DUF4111: Domain of unknown function (DUF4111)
Probab=30.49 E-value=53 Score=23.58 Aligned_cols=43 Identities=33% Similarity=0.468 Sum_probs=29.3
Q ss_pred CcHHHhHHhHHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchH
Q psy607 59 SSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSI 111 (129)
Q Consensus 59 ssekyL~aMkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV 111 (129)
..+.|..+|..|+.+|...+. |.+... +| -||+.--.++.|.|
T Consensus 9 p~~~~~~ai~~~l~~~~~~~~-~~~~~~-----vL----~LcR~~~tl~tg~i 51 (106)
T PF13427_consen 9 PREDYRDAIRDDLPEWEADIE-GDPRYV-----VL----NLCRILYTLRTGEI 51 (106)
T ss_pred CHHHHHHHHHHHHHHHHHhhc-cChHHH-----HH----HHHHHHHHHHhCCc
Confidence 467899999999999988888 655421 11 25666555555544
No 39
>TIGR01215 minE cell division topological specificity factor MinE. This protein is involved in the process of cell division. This protein prevents the proteins MinC and MinD to inhibit cell division at internal sites, but allows inhibiton at polar sites. This allows for correct cell division at the proper sites.
Probab=30.42 E-value=58 Score=22.77 Aligned_cols=21 Identities=19% Similarity=0.423 Sum_probs=19.2
Q ss_pred CcHHHhHHhHHHHHHHHHHHh
Q psy607 59 SSEEYLYAMKEDLAEWLNNLY 79 (129)
Q Consensus 59 ssekyL~aMkEDLaeWI~~Ll 79 (129)
.+-+++..|++|+.++|++-.
T Consensus 33 ~~p~~l~~mk~dil~VIskY~ 53 (81)
T TIGR01215 33 LAPEYLEELRKEILEVISKYV 53 (81)
T ss_pred CCHHHHHHHHHHHHHHHHHhe
Confidence 567899999999999999977
No 40
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=29.70 E-value=29 Score=32.78 Aligned_cols=59 Identities=10% Similarity=0.076 Sum_probs=42.9
Q ss_pred CCCCCcHHHhHHhHHHHHHHHHHHhcccc--CChhhHHhhhhhhhhhhhhhcccccchHHH
Q psy607 55 RPFKSSEEYLYAMKEDLAEWLNNLYVELH--MNVANFMDRLDTGVTLCRGKSTFFKSSIKE 113 (129)
Q Consensus 55 rpfKssekyL~aMkEDLaeWI~~Ll~Ge~--i~~DnF~e~LkdGvlLCkLAN~LqpGSV~~ 113 (129)
.--+++|+--.-.++.+.-|=...++|-. ++.-.|++.-+||.++|+|+|.-.|-.+++
T Consensus 114 tia~inEegelt~~~~lllwc~~~t~~y~p~vd~~df~rswrdGLaf~aLIh~~rPDtld~ 174 (612)
T COG5069 114 TIATINEEGELTKHINLLLWCDEDTGGYKPEVDTFDFFRSWRDGLAFSALIHDSRPDTLDP 174 (612)
T ss_pred hhhcccchhhHHhhhhhheeccccccCcCCCccHHHHHHHhhhhHHHHHHHhhcCCcccCc
Confidence 33456676655667778888777773221 344479999999999999999988886654
No 41
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=28.60 E-value=35 Score=31.53 Aligned_cols=43 Identities=16% Similarity=0.352 Sum_probs=28.7
Q ss_pred HHhHHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccch
Q psy607 65 YAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSS 110 (129)
Q Consensus 65 ~aMkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGS 110 (129)
..|..-|..||++ + +.+-+..+ ++.|-|||+|=+....|.|..
T Consensus 6 ~~l~~~Lv~Wv~t-f-~~~~~~~~-~~dL~DGv~L~evL~qIDp~~ 48 (713)
T PF05622_consen 6 MELCDSLVTWVQT-F-NLSAPCSS-YEDLSDGVALAEVLHQIDPEY 48 (713)
T ss_dssp -HHHHHHHHHHTT-----SS---S-HHHHTTSHHHHHHHHHH-TTT
T ss_pred hhHHHHHHHHHHH-C-CCCCCcCC-HHHccchHHHHHHHHHhCccc
Confidence 4577789999998 4 33323333 467999999999999999874
No 42
>PF14113 DUF4285: Domain of unknown function (DUF4285)
Probab=28.31 E-value=36 Score=24.81 Aligned_cols=34 Identities=26% Similarity=0.484 Sum_probs=25.3
Q ss_pred HhHHHHHHHHHHHhc-cccCChhhHHhhhhh--hhhh
Q psy607 66 AMKEDLAEWLNNLYV-ELHMNVANFMDRLDT--GVTL 99 (129)
Q Consensus 66 aMkEDLaeWI~~Ll~-Ge~i~~DnF~e~Lkd--GvlL 99 (129)
--.+||++||...-. .+.|+...+.+.|++ |+|.
T Consensus 42 ~ra~~l~~~L~~~~~~~~~i~~~~~~~~l~gkkGII~ 78 (115)
T PF14113_consen 42 YRAEELANWLKKKPFKPEKITGADFQSKLKGKKGIIF 78 (115)
T ss_pred hHHHHHHHHHHHCCCCcccccCccchhcccCCCCEEE
Confidence 357899999999941 356677778888875 7765
No 43
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=28.25 E-value=54 Score=28.10 Aligned_cols=48 Identities=13% Similarity=0.082 Sum_probs=31.6
Q ss_pred HHhHHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchHHHHH
Q psy607 65 YAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIKEQR 115 (129)
Q Consensus 65 ~aMkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~~~~ 115 (129)
.+.-.++.+||..++ +..+++-=-|.+++|++||==.-.|. |--++.+
T Consensus 247 ~~~~~~I~~~i~~~L--e~~pPel~~DI~~~GI~LtGGga~l~-Gl~~~i~ 294 (326)
T PF06723_consen 247 EPPVDQIVEAIKEVL--EKTPPELAADILENGIVLTGGGALLR-GLDEYIS 294 (326)
T ss_dssp HHHHHHHHHHHHHHH--HTS-HHHHHHHHHH-EEEESGGGGSB-THHHHHH
T ss_pred HHHHHHHHHHHHHHH--HhCCHHHHHHHHHCCEEEEChhhhhc-cHHHHHH
Confidence 344457778888888 67788877799999999986555554 5434333
No 44
>PF06345 Drf_DAD: DRF Autoregulatory Domain; InterPro: IPR010465 This domain is found in Diaphanous-related formins (Drfs). It binds the N-terminal GTPase-binding domain; this link is broken when GTP-bound Rho binds to the GBD and activates the protein. The addition of diaphanous activating domains (DAD) to mammalian cells induces actin filament formation, stabilises microtubules, and activates serum-response mediated transcription [].; PDB: 3O4X_H 3OBV_E 2BAP_C 2F31_B.
Probab=27.15 E-value=34 Score=17.82 Aligned_cols=12 Identities=25% Similarity=0.614 Sum_probs=9.4
Q ss_pred hhhHHhhhhhhh
Q psy607 86 VANFMDRLDTGV 97 (129)
Q Consensus 86 ~DnF~e~LkdGv 97 (129)
+|.++|+|++|.
T Consensus 3 mdsllealqtg~ 14 (15)
T PF06345_consen 3 MDSLLEALQTGS 14 (15)
T ss_dssp HHHHHHHHHHST
T ss_pred HHHHHHHHHccC
Confidence 477888888884
No 45
>cd08531 SAM_PNT-ERG_FLI-1 Sterile alpha motif (SAM)/Pointed domain of ERG (Ets related gene) and FLI-1 (Friend leukemia integration 1) transcription factors. SAM Pointed domain of ERG/FLI-1 subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The ERG and FLI regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. They are proto-oncogenes implicated in cancer development such as myeloid leukemia, Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=26.91 E-value=64 Score=22.33 Aligned_cols=33 Identities=27% Similarity=0.578 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhc--cc-cCChhhHHhhhhhhhhhhhh
Q psy607 68 KEDLAEWLNNLYV--EL-HMNVANFMDRLDTGVTLCRG 102 (129)
Q Consensus 68 kEDLaeWI~~Ll~--Ge-~i~~DnF~e~LkdGvlLCkL 102 (129)
+++++.||.-... +. +++.++|.. -||--||++
T Consensus 10 ~~~V~~WL~Wa~~ef~L~~i~~~~F~~--m~Gk~LC~l 45 (75)
T cd08531 10 REHVRQWLEWAVKEYGLQDVDVSRFQN--IDGKELCKM 45 (75)
T ss_pred HHHHHHHHHHHHHHcCCCCCChhhccC--CChHHHHcC
Confidence 4677777776652 32 345556633 499999987
No 46
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=26.53 E-value=72 Score=23.04 Aligned_cols=56 Identities=18% Similarity=0.232 Sum_probs=39.7
Q ss_pred HhHHhHHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchHH------HHHHhhcCccc
Q psy607 63 YLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIK------EQRRSYCPEIA 123 (129)
Q Consensus 63 yL~aMkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~------~~~~~~~p~~a 123 (129)
......+.+.+||..+. ....+.=.+.+|+.+..-++.|.-..++ ...+.++|...
T Consensus 74 ~~~~~~~~l~~~l~~~~-----~~~~~i~aic~G~~~La~aGlL~g~~~tt~~~~~~~l~~~~p~~~ 135 (166)
T PF13278_consen 74 DAAAKDPALLDWLRQQH-----AQGTYIAAICTGALLLAEAGLLDGRRATTHWSLAEALRERFPNVN 135 (166)
T ss_dssp HHHTT-HHHHHHHHHHH-----CCTSEEEEETTHHHHHHHTTTTTTSEE---GGGHHHHHHCTTCEE
T ss_pred hhcccCHHHHHHhhhhh-----ccceEEeeeehHHHHHhhhhccCcccccchHHHHHHHHHhCCCcc
Confidence 34455578999999999 3345667778999999988888855544 55666677764
No 47
>cd08534 SAM_PNT-GABP-alpha Sterile alpha motif (SAM)/Pointed domain of GA-binding protein alpha chain. SAM Pointed domain of GABP-alpha subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. This type of transcriptional regulators forms heterotetramers containing two alpha and two beta subunits. It interacts with GA repeats (purine rich repeats). GABP transcriptional factors control gene expression in cell cycle control, apoptosis, and cellular respiration. GABP participates in regulation of transmembrane receptors and key hormones especially in myeloid cells and at the neuromuscular junction.
Probab=25.38 E-value=71 Score=22.92 Aligned_cols=32 Identities=19% Similarity=0.422 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhc--ccc-CChhhHHhhhhhhhhhhhh
Q psy607 68 KEDLAEWLNNLYV--ELH-MNVANFMDRLDTGVTLCRG 102 (129)
Q Consensus 68 kEDLaeWI~~Ll~--Ge~-i~~DnF~e~LkdGvlLCkL 102 (129)
++++..||.-... +.+ ++.++| --||--||.|
T Consensus 24 ~~~V~~WL~Wa~~ef~L~~v~~~~F---~m~Gk~LC~L 58 (89)
T cd08534 24 EDQVLHWVVWAVKEFSLTDIDLSDW---NITGRELCSL 58 (89)
T ss_pred HHHHHHHHHHHHHHcCCCCCChhhc---CCCHHHHhcC
Confidence 4677777776653 222 466666 3499999987
No 48
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=24.35 E-value=1.3e+02 Score=25.84 Aligned_cols=44 Identities=14% Similarity=0.026 Sum_probs=34.5
Q ss_pred HHHhHHhHHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcc
Q psy607 61 EEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKST 105 (129)
Q Consensus 61 ekyL~aMkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~ 105 (129)
.+|....=+++.++|++.+ |.+|+.|.+-++++.---..++.+.
T Consensus 137 ~~Y~~~el~~l~~~LE~~~-G~~it~e~L~~aI~~~N~~R~~~~~ 180 (380)
T TIGR02263 137 GEFYTAELNELCEGLEHLS-GKKITDDAIRASIAVFNDNRKLIQA 180 (380)
T ss_pred HHHHHHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4577777788999999999 9999999988887766555555544
No 49
>PF13592 HTH_33: Winged helix-turn helix
Probab=23.95 E-value=82 Score=20.08 Aligned_cols=26 Identities=8% Similarity=0.307 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhccccCChhhHHhhhhh
Q psy607 69 EDLAEWLNNLYVELHMNVANFMDRLDT 95 (129)
Q Consensus 69 EDLaeWI~~Ll~Ge~i~~DnF~e~Lkd 95 (129)
.++++||...+ |..++.......|+.
T Consensus 8 ~~i~~~I~~~f-gv~ys~~~v~~lL~r 33 (60)
T PF13592_consen 8 KEIAAYIEEEF-GVKYSPSGVYRLLKR 33 (60)
T ss_pred HHHHHHHHHHH-CCEEcHHHHHHHHHH
Confidence 58999999999 999988876666654
No 50
>PF10372 YojJ: Bacterial membrane-spanning protein N-terminus; InterPro: IPR019457 This entry is found at the N terminus of a family of putative membrane-spanning bacterial proteins. These proteins often contain IPR003390 from INTERPRO towards the C terminus. ; PDB: 2FB5_A.
Probab=23.15 E-value=1.4e+02 Score=20.71 Aligned_cols=53 Identities=17% Similarity=0.283 Sum_probs=30.1
Q ss_pred HHhH-HhHHHHHHHHHHHhccccCChhhHHhhh--hhhhhhhhhh------cccccchHHHHHHhh
Q psy607 62 EYLY-AMKEDLAEWLNNLYVELHMNVANFMDRL--DTGVTLCRGK------STFFKSSIKEQRRSY 118 (129)
Q Consensus 62 kyL~-aMkEDLaeWI~~Ll~Ge~i~~DnF~e~L--kdGvlLCkLA------N~LqpGSV~~~~~~~ 118 (129)
++.. +||+++.+=|..|.. +..+-.+.| +|+.+||.+= ..++--|-+++.+.|
T Consensus 5 ~~~e~~~K~~lk~~L~~I~~----~~~~i~~~ld~~~~ClL~e~e~i~~~f~~~q~~AssyYLq~Y 66 (70)
T PF10372_consen 5 QLSESPLKEQLKQYLEQIEE----EISQIIQTLDEDDCCLLCEFEEIREKFLDIQTLASSYYLQCY 66 (70)
T ss_dssp HHHH-HHHHHHHHHHHHHHH----HHHHHHHHTT-TT--GGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHH----HHHHHHHHhccCCceechhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445 788888888888872 222333333 4789999863 345544555555444
No 51
>PLN02409 serine--glyoxylate aminotransaminase
Probab=22.46 E-value=1.7e+02 Score=24.57 Aligned_cols=51 Identities=16% Similarity=0.249 Sum_probs=32.9
Q ss_pred CchhhccCcccccchhhhhhhh-hccCCCCCcHHHhHHhHHHHHHHHHHHhcccc
Q psy607 30 PNWHQLMNMAQMATPTATLVET-RGLRPFKSSEEYLYAMKEDLAEWLNNLYVELH 83 (129)
Q Consensus 30 p~~~~~~~~~~~a~~~~~~~~~-rsirpfKssekyL~aMkEDLaeWI~~Ll~Ge~ 83 (129)
|.+.-|++||-..-+-.++.+. +....++ .....++-+++.+++..++ |.+
T Consensus 7 ~~~~~l~~pGP~~~~~~V~~a~~~~~~~~~--~~~~~~~~~~~~~~l~~~~-g~~ 58 (401)
T PLN02409 7 PGRNHLFVPGPVNIPERVLRAMNRPNEDHR--SPAFPALTKELLEDVKYIF-KTK 58 (401)
T ss_pred CCCceeccCCCCCCCHHHHHHhcCCCCCCC--CHHHHHHHHHHHHHHHHHh-CCC
Confidence 4444577888555556665543 2233333 3455788999999999999 554
No 52
>cd08541 SAM_PNT-FLI-1 Sterile alpha motif (SAM)/Pointed domain of friend leukemia integration 1 transcription activator. SAM Pointed domain of FLI-1 (Friend Leukemia Integration) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The FLI-1 protein participates in regulation of cellular differentiation, proliferation, and survival. The Fli-1 gene was initially described in Friend virus-induced erythroleukemias as a site for virus integration. It is highly expressed in hematopoietic tissues and at lower level in lungs, heart, and ovaries. Fli-1 is a proto-oncogene implicated in Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=22.23 E-value=89 Score=22.66 Aligned_cols=34 Identities=24% Similarity=0.512 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhc--cc-cCChhhHHhhhhhhhhhhhhh
Q psy607 68 KEDLAEWLNNLYV--EL-HMNVANFMDRLDTGVTLCRGK 103 (129)
Q Consensus 68 kEDLaeWI~~Ll~--Ge-~i~~DnF~e~LkdGvlLCkLA 103 (129)
++++++||.=... ++ +++.++|.. -||--||.|-
T Consensus 22 ~~hV~~WL~Wa~~ef~L~~vd~~~F~~--m~Gk~LC~Ls 58 (91)
T cd08541 22 QEHVRQWLEWAIKEYGLMEIDTSFFQN--MDGKELCKMN 58 (91)
T ss_pred HHHHHHHHHHHHHHcCCCCCChhhccC--CCHHHHHhCC
Confidence 5677777776652 22 235555531 3999999873
No 53
>PF06395 CDC24: CDC24 Calponin; InterPro: IPR010481 This is a calponin homology domain.
Probab=21.98 E-value=53 Score=23.79 Aligned_cols=22 Identities=14% Similarity=0.208 Sum_probs=19.1
Q ss_pred hHHhhhhhhhhhhhhhcccccc
Q psy607 88 NFMDRLDTGVTLCRGKSTFFKS 109 (129)
Q Consensus 88 nF~e~LkdGvlLCkLAN~LqpG 109 (129)
..-..++.|.=||-|-|.++|.
T Consensus 5 ~LW~~fr~G~PLc~lfNal~p~ 26 (89)
T PF06395_consen 5 QLWKLFRQGYPLCVLFNALQPE 26 (89)
T ss_pred HHHHHHhCcCcHHHHHHccCCc
Confidence 4556789999999999999995
No 54
>PF01314 AFOR_C: Aldehyde ferredoxin oxidoreductase, domains 2 & 3; InterPro: IPR001203 Enzymes of the aldehyde ferredoxin oxidoreductase (AOR) family [] contain a tungsten cofactor and an 4Fe4S cluster and catalyse the interconversion of aldehydes to carboxylates []. This family includes AOR, formaldehyde ferredoxin oxidoreductase (FOR), glyceraldehyde-3-phosphate ferredoxin oxidoreductase (GAPOR), all isolated from hyperthermophilic archea []; carboxylic acid reductase found in clostridia []; and hydroxycarboxylate viologen oxidoreductase from Proteus vulgaris, the sole member of the AOR family containing molybdenum []. GAPOR may be involved in glycolysis [], but the functions of the other proteins are not yet clear. AOR has been proposed to be the primary enzyme responsible for oxidising the aldehydes that are produced by the 2-keto acid oxidoreductases []. This entry represents the C-terminal region of these enzymes, containing the alpha-helical structural domains 2 and 3 [, ].; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0016625 oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor, 0051536 iron-sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 1B25_C 1B4N_C 1AOR_B.
Probab=21.65 E-value=74 Score=27.37 Aligned_cols=38 Identities=21% Similarity=0.150 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccc
Q psy607 69 EDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFF 107 (129)
Q Consensus 69 EDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~Lq 107 (129)
+.+++|++.++ |.+++.+.++++=+.=+.|.++.|..+
T Consensus 284 ~~~a~~~~avT-G~~~t~eel~~~geRi~~L~R~fn~r~ 321 (382)
T PF01314_consen 284 EEYAELLNAVT-GWEMTPEELLEAGERIWNLERAFNVRE 321 (382)
T ss_dssp CHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 46899999999 999999999988888889999988766
No 55
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=20.84 E-value=1.5e+02 Score=26.20 Aligned_cols=54 Identities=13% Similarity=0.181 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHhccccCChhhH----HhhhhhhhhhhhhhcccccchHHHH-HHhhcCc
Q psy607 67 MKEDLAEWLNNLYVELHMNVANF----MDRLDTGVTLCRGKSTFFKSSIKEQ-RRSYCPE 121 (129)
Q Consensus 67 MkEDLaeWI~~Ll~Ge~i~~DnF----~e~LkdGvlLCkLAN~LqpGSV~~~-~~~~~p~ 121 (129)
=++++..|+++++ ...|+.+.. +-...=-+---++++.|..+++-+. +|+|||=
T Consensus 132 ~~~el~~~a~~ll-a~~f~~~ss~~~~fi~AAl~lyw~q~a~~i~~~~~~e~e~~~~CPv 190 (308)
T COG3058 132 SEQELESMASALL-ASDFSLVSSAKAPFIWAALSLYWAQMAQGIPGKARVENESRQYCPV 190 (308)
T ss_pred hHHHHHHHHHHHH-hcccchhhHhHhHHHHHHHHHHHHHHHhcCCccccccccccccCCC
Confidence 3568889999999 556643321 2222222333588999998888877 8999994
No 56
>cd00166 SAM Sterile alpha motif.; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerization.
Probab=20.76 E-value=76 Score=18.87 Aligned_cols=33 Identities=36% Similarity=0.382 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhh
Q psy607 68 KEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRG 102 (129)
Q Consensus 68 kEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkL 102 (129)
.+++.+||..+- .+-=.+.|.+.--||-.|+.+
T Consensus 4 ~~~V~~wL~~~~--~~~y~~~f~~~~i~g~~L~~l 36 (63)
T cd00166 4 PEDVAEWLESLG--LGQYADNFRENGIDGDLLLLL 36 (63)
T ss_pred HHHHHHHHHHcC--hHHHHHHHHHcCCCHHHHhHC
Confidence 368899998753 222234455443467777644
No 57
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=20.46 E-value=1.9e+02 Score=18.86 Aligned_cols=37 Identities=14% Similarity=0.226 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhc--cccCChhhHHhhhhhhhhhhhhhc
Q psy607 68 KEDLAEWLNNLYV--ELHMNVANFMDRLDTGVTLCRGKS 104 (129)
Q Consensus 68 kEDLaeWI~~Ll~--Ge~i~~DnF~e~LkdGvlLCkLAN 104 (129)
.+++..+++.+-. .-.|+-+.|...+...+..|+|-|
T Consensus 50 ~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~~~~~~~~ 88 (88)
T cd00213 50 PEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLAVACHEFF 88 (88)
T ss_pred HHHHHHHHHHhccCCCCcCcHHHHHHHHHHHHHHHhhhC
Confidence 4567777776642 345799999999999999998754
No 58
>cd08533 SAM_PNT-ETS-1,2 Sterile alpha motif (SAM)/Pointed domain of ETS-1,2 family. SAM Pointed domain of ETS-1,2 family of transcriptional activators is a protein-protein interaction domain. It carries a kinase docking site and mediates interaction between ETS transcriptional activators and protein kinases. This group of transcriptional factors is involved in the Ras/MAP kinase signaling pathway. MAP kinases phosphorylate the transcription factors. Phosphorylated factors then recruit coactivators and enhance transactivation. Members of this group play a role in regulation of different embryonic developmental processes. ETS-1,2 transcriptional activators are proto-oncogenes involved in malignant transformation and tumor progression. They are potential molecular targets for selective cancer therapy.
Probab=20.46 E-value=83 Score=21.64 Aligned_cols=32 Identities=25% Similarity=0.413 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhc--cc-cCChhhHHhhhhhhhhhhhh
Q psy607 68 KEDLAEWLNNLYV--EL-HMNVANFMDRLDTGVTLCRG 102 (129)
Q Consensus 68 kEDLaeWI~~Ll~--Ge-~i~~DnF~e~LkdGvlLCkL 102 (129)
+++++.||.=... +. .++.++| --||--||.+
T Consensus 9 ~~~V~~WL~Wa~~ef~L~~v~~~~F---~m~Gk~LC~l 43 (71)
T cd08533 9 ETHVRQWLLWAVNEFSLEGVNFQKF---CMSGRDLCAL 43 (71)
T ss_pred HHHHHHHHHHHHHHcCCCCCCcccC---CCCHHHHHcC
Confidence 4677788776662 22 4566666 5699999987
Done!