Query psy607
Match_columns 129
No_of_seqs 111 out of 127
Neff 3.2
Searched_HMMs 29240
Date Fri Aug 16 16:50:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy607.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/607hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i6x_A P195, RAS GTPase-activa 99.6 2.9E-16 1E-20 122.3 1.2 77 29-112 16-93 (193)
2 2rr8_A Iqgap1 protein; F-actin 99.6 9.4E-16 3.2E-20 118.4 3.8 58 53-112 13-71 (190)
3 1ujo_A Transgelin; CH domain, 99.6 4.9E-16 1.7E-20 115.4 1.8 53 59-112 2-62 (144)
4 1wyp_A Calponin 1; CH domain, 99.6 5.3E-16 1.8E-20 114.3 1.7 54 57-112 8-61 (136)
5 1wyn_A Calponin-2; CH domain, 99.6 6.8E-16 2.3E-20 115.0 1.6 54 57-112 8-61 (146)
6 1wym_A Transgelin-2; CH domain 99.5 1.5E-15 5.2E-20 113.9 2.7 55 57-112 8-70 (155)
7 1p2x_A RNG2 protein, RAS GTPas 99.5 1.4E-14 4.8E-19 109.0 2.4 53 58-112 4-57 (159)
8 1h67_A Calponin alpha; cytoske 99.4 2E-14 7E-19 101.7 1.3 46 66-113 3-48 (108)
9 1p5s_A RAS GTPase-activating-l 99.4 6.1E-14 2.1E-18 109.7 3.2 53 59-112 47-101 (203)
10 2l3g_A RHO guanine nucleotide 99.3 1.3E-12 4.4E-17 95.8 2.5 48 65-113 11-65 (126)
11 1wyr_A RHO guanine nucleotide 99.2 2.3E-12 7.8E-17 93.4 2.8 46 66-112 6-58 (121)
12 2qjz_A Microtubule-associated 98.8 1.6E-09 5.4E-14 80.0 3.1 42 68-113 7-48 (123)
13 1wyo_A Protein EB3, microtubul 98.7 4.1E-09 1.4E-13 81.1 3.0 45 64-112 20-64 (159)
14 3ky9_A Proto-oncogene VAV; cal 98.7 7.2E-09 2.5E-13 88.7 2.9 45 67-112 6-59 (587)
15 2yrn_A Neuron navigator 2 isof 98.6 1.2E-08 4.1E-13 73.3 2.1 55 57-112 9-66 (129)
16 1aoa_A T-fimbrin; actin-bindin 98.4 9.8E-08 3.4E-12 75.5 3.4 54 58-112 16-79 (275)
17 1wku_A Alpha-actinin 3; calpon 98.2 3.9E-07 1.3E-11 71.9 2.0 54 59-112 20-73 (254)
18 1rt8_A Fimbrin; filamentous ac 98.2 6.1E-07 2.1E-11 76.7 3.2 53 60-113 6-68 (513)
19 1pxy_A Fimbrin-like protein; c 98.2 6.7E-07 2.3E-11 76.2 2.8 49 63-112 4-62 (506)
20 2wa7_A Filamin-B; disease muta 98.2 5.4E-07 1.9E-11 70.5 1.9 54 58-111 12-65 (245)
21 3f7p_A Plectin-1; plakin, hemi 98.1 1.2E-06 4.3E-11 71.6 2.2 58 55-112 62-119 (296)
22 1sh5_A Plectin 1, PLTN, PCN; a 98.0 2.5E-06 8.7E-11 66.2 2.2 51 61-112 7-63 (245)
23 1dxx_A Dystrophin; structural 97.8 3.9E-06 1.3E-10 65.5 0.8 54 58-112 8-63 (246)
24 1sjj_A Actinin; 3-helix bundle 97.5 1.7E-05 5.7E-10 69.4 0.6 52 61-112 3-54 (863)
25 3hoc_A Filamin-A; calponin hom 97.4 5.8E-05 2E-09 60.9 1.9 53 59-111 40-92 (272)
26 1rt8_A Fimbrin; filamentous ac 97.3 6.8E-05 2.3E-09 64.1 1.5 45 66-112 285-329 (513)
27 2vzc_A Alpha-parvin; membrane, 97.1 0.00017 5.8E-09 52.5 1.6 47 66-112 22-68 (131)
28 2r8u_A Microtubule-associated 96.9 0.00035 1.2E-08 57.5 1.9 49 68-120 17-65 (268)
29 2qjx_A Protein BIM1; calponin 96.9 0.00032 1.1E-08 52.1 1.5 46 68-118 12-57 (127)
30 1wjo_A T-plastin; CH domain, a 96.8 0.00028 9.5E-09 51.9 0.8 46 68-113 9-57 (124)
31 1pxy_A Fimbrin-like protein; c 96.5 0.00077 2.6E-08 57.4 1.5 46 65-112 275-320 (506)
32 4abo_I MAL3, microtubule integ 96.4 0.0017 5.9E-08 49.4 2.8 47 68-119 8-54 (145)
33 2d89_A EHBP1 protein; all alph 96.2 0.0016 5.5E-08 46.5 1.6 47 67-113 10-57 (119)
34 2d87_A Smoothelin splice isofo 96.0 0.0018 6.2E-08 47.0 1.1 48 66-113 7-55 (128)
35 4b7l_A Filamin-B; structural p 96.0 0.0016 5.6E-08 53.6 0.8 41 71-111 22-62 (347)
36 1bkr_A Spectrin beta chain; fi 95.8 0.0032 1.1E-07 44.3 1.8 47 67-113 4-51 (109)
37 1wyl_A NEDD9 interacting prote 95.7 0.0026 9E-08 45.2 0.7 46 67-112 8-54 (116)
38 1bhd_A Utrophin; calponin homo 95.6 0.005 1.7E-07 43.9 2.0 47 67-113 9-56 (118)
39 1wku_A Alpha-actinin 3; calpon 95.3 0.0059 2E-07 48.0 1.7 48 66-113 140-188 (254)
40 1sh5_A Plectin 1, PLTN, PCN; a 95.2 0.0087 3E-07 46.3 2.3 49 66-114 133-182 (245)
41 2d88_A Protein mical-3; all al 95.1 0.0034 1.2E-07 45.0 -0.2 46 67-112 10-56 (121)
42 1wyq_A Spectrin beta chain, br 95.1 0.0045 1.5E-07 44.7 0.4 46 67-112 8-54 (127)
43 2wa7_A Filamin-B; disease muta 94.9 0.0087 3E-07 46.6 1.7 44 66-111 143-186 (245)
44 1dxx_A Dystrophin; structural 94.7 0.012 4.1E-07 45.7 2.0 48 67-114 136-184 (246)
45 3f7p_A Plectin-1; plakin, hemi 94.1 0.019 6.4E-07 46.9 1.8 48 67-114 190-238 (296)
46 4b7l_A Filamin-B; structural p 93.7 0.023 7.9E-07 46.7 1.7 44 66-111 140-183 (347)
47 3hoc_A Filamin-A; calponin hom 93.0 0.035 1.2E-06 44.7 1.7 44 66-111 170-213 (272)
48 1sjj_A Actinin; 3-helix bundle 91.1 0.038 1.3E-06 48.3 -0.1 63 50-113 103-169 (863)
49 1aoa_A T-fimbrin; actin-bindin 90.8 0.082 2.8E-06 41.5 1.5 43 67-110 169-213 (275)
50 1wix_A HOOK homolog 1, RSGI RU 65.7 2.7 9.2E-05 31.4 1.8 43 65-110 8-50 (164)
51 2ee7_A Sperm flagellar protein 61.0 4.7 0.00016 29.4 2.3 44 67-112 16-59 (127)
52 3bs7_A Protein aveugle; sterIl 54.8 10 0.00034 24.1 2.9 35 68-103 8-43 (78)
53 2z16_A Matrix protein 1, M1; A 53.5 6.1 0.00021 30.6 1.9 54 37-100 7-60 (165)
54 1sv0_C Modulator of the activi 50.9 14 0.00047 24.5 3.2 33 68-103 16-53 (82)
55 1iwp_G Glycerol dehydratase ga 49.8 8.6 0.00029 29.2 2.2 23 51-73 91-113 (141)
56 3bs5_B Connector enhancer of k 44.9 10 0.00036 24.1 1.8 35 68-102 9-43 (80)
57 1eex_G Propanediol dehydratase 43.7 12 0.00041 29.3 2.2 23 51-73 123-145 (173)
58 1ji7_A ETS-related protein TEL 43.7 10 0.00036 25.8 1.7 33 68-103 17-52 (89)
59 1kw4_A Polyhomeotic; SAM domai 39.8 15 0.00052 24.6 2.0 34 68-102 19-52 (89)
60 1pk1_B Sex COMB on midleg CG94 38.7 23 0.00077 23.9 2.8 35 68-102 19-53 (89)
61 2ean_A Connector enhancer of k 38.6 9.2 0.00032 24.7 0.7 34 69-102 14-47 (83)
62 1v85_A Similar to ring finger 38.3 14 0.00049 24.5 1.7 34 68-103 22-57 (91)
63 3o3m_A Alpha subunit 2-hydroxy 38.2 38 0.0013 27.7 4.5 36 61-97 153-188 (408)
64 2qar_B Telsam domain; polymer, 36.1 21 0.00071 24.4 2.3 32 68-102 17-51 (93)
65 1hlv_A CENP-B, major centromer 35.3 31 0.0011 22.8 3.0 24 64-87 74-98 (131)
66 3gag_A Putative NADH dehydroge 34.6 13 0.00045 26.4 1.1 19 41-59 3-21 (206)
67 3pxv_A Nitroreductase; flavopr 34.0 16 0.00054 25.7 1.4 19 41-59 3-21 (189)
68 2f3n_A SH3 and multiple ankyri 33.2 35 0.0012 21.7 2.8 34 68-103 7-40 (76)
69 1zd1_A Sulfotransferase 4A1; S 33.2 21 0.00071 27.2 2.1 59 65-123 197-262 (284)
70 3o3m_B Beta subunit 2-hydroxya 32.7 45 0.0015 27.1 4.1 36 61-97 133-168 (385)
71 1g8e_A Flagellar transcription 30.8 5.6 0.00019 29.2 -1.5 49 48-102 19-67 (116)
72 3bq7_A Diacylglycerol kinase d 28.6 42 0.0014 21.5 2.7 32 69-102 13-44 (81)
73 1sv0_A ETS DNA-binding protein 28.0 35 0.0012 23.0 2.3 33 68-103 15-50 (85)
74 3kxe_C Antitoxin protein PARD- 26.2 53 0.0018 22.2 2.9 54 39-95 25-78 (88)
75 3hoi_A FMN-dependent nitroredu 25.7 35 0.0012 23.8 2.0 44 27-78 6-49 (193)
76 2e8o_A SAM domain and HD domai 25.6 38 0.0013 22.8 2.1 34 68-103 32-67 (103)
77 1sxd_A GA repeat binding prote 25.4 38 0.0013 23.1 2.1 33 68-103 28-63 (91)
78 2d8c_A Phosphatidylcholine:cer 24.7 33 0.0011 23.5 1.7 31 68-102 22-52 (97)
79 3bs5_A Protein aveugle; sterIl 23.8 56 0.0019 22.4 2.7 35 68-102 28-62 (106)
80 3bem_A Putative NAD(P)H nitror 23.7 29 0.00098 25.0 1.3 19 41-59 13-31 (218)
81 2e8p_A ELF3 protein; cell-free 23.6 37 0.0013 23.5 1.8 33 68-103 29-66 (92)
82 3si5_X Protein CASC5; BUBR1-bl 23.4 28 0.00096 19.3 0.9 16 81-96 8-23 (24)
83 3bfx_A Sulfotransferase 1C2; P 22.9 36 0.0012 26.1 1.7 55 65-123 195-274 (296)
84 1q44_A RARO47, steroid sulfotr 22.6 41 0.0014 26.5 2.0 56 65-123 229-306 (326)
85 3gbh_A NAD(P)H-flavin oxidored 21.3 47 0.0016 23.6 2.0 19 42-60 9-27 (213)
86 2reo_A Putative sulfotransfera 21.1 32 0.0011 26.5 1.2 55 65-123 204-283 (305)
87 1x66_A Friend leukemia integra 20.9 38 0.0013 23.3 1.4 34 68-103 29-65 (98)
88 1sxe_A Transcriptional regulat 20.7 46 0.0016 23.0 1.8 34 68-103 32-68 (97)
89 2kxo_A Cell division topologic 20.4 53 0.0018 22.7 2.0 22 58-79 34-55 (95)
No 1
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens}
Probab=99.57 E-value=2.9e-16 Score=122.28 Aligned_cols=77 Identities=17% Similarity=0.280 Sum_probs=55.5
Q ss_pred CCchhhccCcccccchhhhhhhhhccCCCCCcHHHhHHhHHHHHHHHHHHhccccCCh-hhHHhhhhhhhhhhhhhcccc
Q psy607 29 YPNWHQLMNMAQMATPTATLVETRGLRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNV-ANFMDRLDTGVTLCRGKSTFF 107 (129)
Q Consensus 29 ~p~~~~~~~~~~~a~~~~~~~~~rsirpfKssekyL~aMkEDLaeWI~~Ll~Ge~i~~-DnF~e~LkdGvlLCkLAN~Lq 107 (129)
+|++ |++ +.|.+..-.+--.-|+++...+|+..++ |+.+||+.++ |++++. ++|++.|+|||+||+|+|+|+
T Consensus 16 ~~~~----g~~-~~~~~~~~~~md~~r~~~~a~eyl~~~~-e~~~WIe~~l-g~~l~~~~~l~~~LrdGvvLCkL~N~l~ 88 (193)
T 3i6x_A 16 RPHY----GSV-LDNERLTAEEMDERRRQNVAYEYLCHLE-EAKRWMEACL-GEDLPPTTELEEGLRNGVYLAKLGNFFS 88 (193)
T ss_dssp -------------------CTTHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-SSCCCCGGGHHHHHTTSHHHHHHHHHHC
T ss_pred cccc----ccc-ccccccCHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHh-CCCCCChHHHHHHhccHHHHHHHHHHHC
Confidence 5776 776 5565544334444578899999998888 9999999999 999976 599999999999999999999
Q ss_pred cchHH
Q psy607 108 KSSIK 112 (129)
Q Consensus 108 pGSV~ 112 (129)
||+|.
T Consensus 89 Pg~vp 93 (193)
T 3i6x_A 89 PKVVS 93 (193)
T ss_dssp TTTCC
T ss_pred CCCCC
Confidence 99984
No 2
>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens}
Probab=99.57 E-value=9.4e-16 Score=118.45 Aligned_cols=58 Identities=19% Similarity=0.307 Sum_probs=53.8
Q ss_pred ccCCCCCcHHHhHHhHHHHHHHHHHHhccccCCh-hhHHhhhhhhhhhhhhhcccccchHH
Q psy607 53 GLRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNV-ANFMDRLDTGVTLCRGKSTFFKSSIK 112 (129)
Q Consensus 53 sirpfKssekyL~aMkEDLaeWI~~Ll~Ge~i~~-DnF~e~LkdGvlLCkLAN~LqpGSV~ 112 (129)
+.|++|++.+|+..+ +|+++||+.++ |++++. ++|++.|+|||+||+|||+|+||+|.
T Consensus 13 ~~~~~k~a~~y~~~~-~e~~~WIe~~l-g~~lp~~~~f~~~LrDGvvLCkL~N~l~P~sv~ 71 (190)
T 2rr8_A 13 ERRRQNVAYEYLCHL-EEAKRWMEACL-GEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVS 71 (190)
T ss_dssp SSCSCHHHHHHHHHH-HHHHHHHHHHS-CCCCCCHHHHHHHHSSHHHHHHHHHHSCTTTSC
T ss_pred HHHHHHHHHhhcHHH-HHHHHHHHHHh-CCCCCChhHHHHHHcchhhHHHHHHHhCCCCcc
Confidence 348899999999999 99999999999 999964 79999999999999999999999983
No 3
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1
Probab=99.56 E-value=4.9e-16 Score=115.39 Aligned_cols=53 Identities=23% Similarity=0.310 Sum_probs=49.3
Q ss_pred CcHHHhHHhHHHHHHHHHHHhccccCC-----hhhHHhhhhhhhhhhhhhccccc---chHH
Q psy607 59 SSEEYLYAMKEDLAEWLNNLYVELHMN-----VANFMDRLDTGVTLCRGKSTFFK---SSIK 112 (129)
Q Consensus 59 ssekyL~aMkEDLaeWI~~Ll~Ge~i~-----~DnF~e~LkdGvlLCkLAN~Lqp---GSV~ 112 (129)
|+++|+.++++|+++||+.++ |++++ .++|++.|+||||||+|||+|+| |+|.
T Consensus 2 s~~~y~~~~e~e~~~WIe~~l-~~~l~~~~~~~~~f~~~LkDGvvLCkL~N~l~P~~~~~I~ 62 (144)
T 1ujo_A 2 SSGSSGEELEERLVEWIVVQC-GPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKPVK 62 (144)
T ss_dssp CCCCSCCHHHHHHHHHHHHHH-CTTTCCCCSSSSSHHHHTTSSHHHHHHHHHHSCTTTCCSC
T ss_pred CcccCCHHHHHHHHHHHHHHh-CCCCCCcCCcHHHHHHHHcchHHHHHHHHHhCcccCCCcc
Confidence 688999999999999999999 99985 47999999999999999999999 7775
No 4
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=99.56 E-value=5.3e-16 Score=114.28 Aligned_cols=54 Identities=28% Similarity=0.487 Sum_probs=50.7
Q ss_pred CCCcHHHhHHhHHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchHH
Q psy607 57 FKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIK 112 (129)
Q Consensus 57 fKssekyL~aMkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~ 112 (129)
-|+.++|+.++++++.+||+.++ |+++ .++|++.|+|||+||+|+|+|+||+|.
T Consensus 8 ~k~~~ky~~~~~~e~~~WIe~~l-~~~~-~~~l~~~L~DGvvLCkL~N~l~P~~v~ 61 (136)
T 1wyp_A 8 NKLAQKYDHQREQELREWIEGVT-GRRI-GNNFMDGLKDGIILCEFINKLQPGSVK 61 (136)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHT-CCCC-CSCTTHHHHTSHHHHHHHHHHSTTSSS
T ss_pred HHHHccCCHHHHHHHHHHHHHHh-CCCC-cHHHHHHHccHHhHHHHHHhhCCCCcc
Confidence 57899999999999999999999 9999 568999999999999999999999984
No 5
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=99.55 E-value=6.8e-16 Score=115.03 Aligned_cols=54 Identities=20% Similarity=0.363 Sum_probs=50.7
Q ss_pred CCCcHHHhHHhHHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchHH
Q psy607 57 FKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIK 112 (129)
Q Consensus 57 fKssekyL~aMkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~ 112 (129)
-|+.++|+.++++++.+||+.++ |+++ .++|++.|+|||+||+|||+|+||+|.
T Consensus 8 ~k~~~ky~~~~~~e~~~WIe~~l-~~~i-~~~l~~~L~DGvvLCkL~N~l~P~~v~ 61 (146)
T 1wyn_A 8 NRLLSKYDPQKEAELRTWIEGLT-GLSI-GPDFQKGLKDGTILCTLMNKLQPGSVP 61 (146)
T ss_dssp CCCCSCCCTTHHHHHHHHHHHHH-CCCC-CSCHHHHHHTTSHHHHHHHHHCTTSCS
T ss_pred HHHHccCCHHHHHHHHHHHHHHh-CCCC-cHHHHHHHccHHHHHHHHHHhCCCCcc
Confidence 57899999999999999999999 9999 578999999999999999999999984
No 6
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.5e-15 Score=113.90 Aligned_cols=55 Identities=20% Similarity=0.433 Sum_probs=51.2
Q ss_pred CCCcHHHhHHhHHHHHHHHHHHhccccCCh-----hhHHhhhhhhhhhhhhhccccc---chHH
Q psy607 57 FKSSEEYLYAMKEDLAEWLNNLYVELHMNV-----ANFMDRLDTGVTLCRGKSTFFK---SSIK 112 (129)
Q Consensus 57 fKssekyL~aMkEDLaeWI~~Ll~Ge~i~~-----DnF~e~LkdGvlLCkLAN~Lqp---GSV~ 112 (129)
-|...+|+.++++|+.+||+.++ |++++. ++|++.|+||||||+|||+|+| |+|.
T Consensus 8 ~k~~~ky~~~~e~e~~~WIe~~l-~~~l~~~~~~~~~~~~~LkDGvvLCkL~N~l~P~~~~~i~ 70 (155)
T 1wym_A 8 QKIEKQYDADLEQILIQWITTQC-RKDVGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPVK 70 (155)
T ss_dssp SSCCCSCCHHHHHHHHHHHHHHS-SSCCCCCCSSHHHHHHHHHTSHHHHHHHHHHSCTTTCSCC
T ss_pred HHHHccCCHHHHHHHHHHHHHHh-CCCCCCCcccHHHHHHHHcchHHHHHHHHHhccccCCCcC
Confidence 47789999999999999999999 999965 7999999999999999999999 8875
No 7
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=99.46 E-value=1.4e-14 Score=109.02 Aligned_cols=53 Identities=17% Similarity=0.357 Sum_probs=46.9
Q ss_pred CCcHHHhHHhHHHHHHHHHHHhccccCCh-hhHHhhhhhhhhhhhhhcccccchHH
Q psy607 58 KSSEEYLYAMKEDLAEWLNNLYVELHMNV-ANFMDRLDTGVTLCRGKSTFFKSSIK 112 (129)
Q Consensus 58 KssekyL~aMkEDLaeWI~~Ll~Ge~i~~-DnF~e~LkdGvlLCkLAN~LqpGSV~ 112 (129)
..+.+|+..+ +|+.+||+.++ |++++. ++|++.|+|||+||+|||+|+||+|.
T Consensus 4 ~~a~eyl~~~-~e~~~WIe~~l-~~~l~~~~~l~~~LkdGvvLCkL~N~l~P~~i~ 57 (159)
T 1p2x_A 4 LQAYDYLCRV-DEAKKWIEECL-GTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLI 57 (159)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHH-TSCCCCGGGHHHHTTTSHHHHHHHHHHCTTSCC
T ss_pred hHHHHHHHHH-HHHHHHHHHHh-CCCCCChHHHHHHHcchHHHHHHHHHhCCCCcc
Confidence 4467888655 89999999999 999964 69999999999999999999999974
No 8
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1
Probab=99.43 E-value=2e-14 Score=101.71 Aligned_cols=46 Identities=26% Similarity=0.473 Sum_probs=42.1
Q ss_pred HhHHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchHHH
Q psy607 66 AMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIKE 113 (129)
Q Consensus 66 aMkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~~ 113 (129)
.+++|+.+||+.++ |+++ +++|++.|+|||+||+|+|+|+||+|..
T Consensus 3 ~~e~e~~~WIe~~l-~~~~-~~~l~~~L~dGvvLCkL~N~l~P~~v~k 48 (108)
T 1h67_A 3 QTERQLRVWIEGAT-GRRI-GDNFMDGLKDGVILCELINKLQPGSVQK 48 (108)
T ss_dssp CSSHHHHHHHHHHH-SCCC-CSCHHHHHHHCSHHHHHHHHHSTTSSTT
T ss_pred HHHHHHHHHHHHHh-CCCC-cHHHHHHHccHHHHHHHHHHhCCCCccc
Confidence 46789999999999 9999 5689999999999999999999999863
No 9
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=99.41 E-value=6.1e-14 Score=109.75 Aligned_cols=53 Identities=17% Similarity=0.358 Sum_probs=48.2
Q ss_pred CcHHHhH-HhHHHHHHHHHHHhccccCC-hhhHHhhhhhhhhhhhhhcccccchHH
Q psy607 59 SSEEYLY-AMKEDLAEWLNNLYVELHMN-VANFMDRLDTGVTLCRGKSTFFKSSIK 112 (129)
Q Consensus 59 ssekyL~-aMkEDLaeWI~~Ll~Ge~i~-~DnF~e~LkdGvlLCkLAN~LqpGSV~ 112 (129)
...+|.+ .+++|+.+||+.++ |++++ .++|++.|+||||||+|||+|+||+|.
T Consensus 47 ~~~~ye~l~~~~e~~~WIe~~l-~~~l~~~~~f~~~LrDGvvLCkLiN~l~P~sv~ 101 (203)
T 1p5s_A 47 TLQAYDYLCRVDEAKKWIEECL-GTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLI 101 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-TSCCCCGGGHHHHHTTSHHHHHHHHHHCTTSCC
T ss_pred HHhhhhHHHHHHHHHHHHHHHh-CCCCCChHHHHHHHcchHHHHHHHHHhCCCCcc
Confidence 4677887 79999999999999 99986 479999999999999999999999984
No 10
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens}
Probab=99.26 E-value=1.3e-12 Score=95.77 Aligned_cols=48 Identities=25% Similarity=0.395 Sum_probs=40.6
Q ss_pred HHhHHHHHHHHHHHhcc-cc-----CChhhH-HhhhhhhhhhhhhhcccccchHHH
Q psy607 65 YAMKEDLAEWLNNLYVE-LH-----MNVANF-MDRLDTGVTLCRGKSTFFKSSIKE 113 (129)
Q Consensus 65 ~aMkEDLaeWI~~Ll~G-e~-----i~~DnF-~e~LkdGvlLCkLAN~LqpGSV~~ 113 (129)
.++++++++||++++ | +. .++++| .+.|+|||+||+|+|+|+||+|..
T Consensus 11 ~~~~~e~~~WI~~~~-~L~~~~~~~~~~~~~l~~~LkdGvvLCkLiN~l~Pg~i~k 65 (126)
T 2l3g_A 11 MNSAEQTVTWLITLG-VLESPKKTISDPEGFLQASLKDGVVLCRLLERLLPGTIEK 65 (126)
T ss_dssp CCHHHHHHHHHHHTT-SSCCCSSCCSCHHHHHHHHHTTSHHHHHHHHHHSTTCCSC
T ss_pred HHHHHHHHHHHHHHh-CccccCCCCCChhhHHHHHHccHHHHHHHHHHhCCCCCCc
Confidence 457889999999997 5 22 367788 599999999999999999999873
No 11
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=99.24 E-value=2.3e-12 Score=93.41 Aligned_cols=46 Identities=24% Similarity=0.457 Sum_probs=39.4
Q ss_pred HhHHHHHHHHHHHhccccC------Chhh-HHhhhhhhhhhhhhhcccccchHH
Q psy607 66 AMKEDLAEWLNNLYVELHM------NVAN-FMDRLDTGVTLCRGKSTFFKSSIK 112 (129)
Q Consensus 66 aMkEDLaeWI~~Ll~Ge~i------~~Dn-F~e~LkdGvlLCkLAN~LqpGSV~ 112 (129)
+.++++++||++++ +++. +.++ |++.|+|||+||+|+|+|+||+|.
T Consensus 6 ~~e~e~~~WI~~~~-~l~~~~~~~~~~~~~l~~~L~dGvvLCkL~N~l~Pg~i~ 58 (121)
T 1wyr_A 6 SGEEQIVTWLISLG-VLESPKKTICDPEEFLKSSLKNGVVLCKLINRLMPGSVE 58 (121)
T ss_dssp CSHHHHHHHHHHHT-SSCCCSSCCSCHHHHHHHHHHHSHHHHHHHHHHSTTCCS
T ss_pred HHHHHHHHHHHHhc-CcCCcccCCCCcHHHHHHHHccHHHHHHHHHHhCCCCCC
Confidence 45789999999998 6443 4566 579999999999999999999987
No 12
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A
Probab=98.82 E-value=1.6e-09 Score=79.97 Aligned_cols=42 Identities=24% Similarity=0.545 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchHHH
Q psy607 68 KEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIKE 113 (129)
Q Consensus 68 kEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~~ 113 (129)
+.||++|||+++ +++++.- |.|+||+++|||+|.|.||+|.-
T Consensus 7 r~ElL~WIN~~L-~~~~~ki---E~L~~Ga~yCqlmd~l~Pg~v~l 48 (123)
T 2qjz_A 7 RHDMLAWINESL-QLNLTKI---EQLCSGAAYCQFMDMLFPGSIAL 48 (123)
T ss_dssp HHHHHHHHHHHH-TCCCCCG---GGGGGSHHHHHHHHHHSTTSSCG
T ss_pred HHHHHHHHHHHH-CCCCchH---HHcCchHHHHHHHHHHccCCCcH
Confidence 569999999999 9999755 78999999999999999999863
No 13
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=4.1e-09 Score=81.08 Aligned_cols=45 Identities=18% Similarity=0.435 Sum_probs=39.6
Q ss_pred hHHhHHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchHH
Q psy607 64 LYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIK 112 (129)
Q Consensus 64 L~aMkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~ 112 (129)
...-+.||++||++++ +++++.- |.|+||+++|||+|.|.||+|.
T Consensus 20 ~~~sr~ElL~WIN~~L-~~~~~ki---E~L~~GaayCQLmd~L~PgsV~ 64 (159)
T 1wyo_A 20 ENLSRHDMLAWVNDSL-HLNYTKI---EQLCSGAAYCQFMDMLFPGCVH 64 (159)
T ss_dssp CCCCHHHHHHHHHHHS-CCCCSSG---GGGGGCHHHHHHHHHHSTTSSC
T ss_pred CchhHHHHHHHHHHHH-CCCCchh---hhcCccHHHHHHHHHHccCCCc
Confidence 3445679999999999 9999755 7899999999999999999986
No 14
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=98.67 E-value=7.2e-09 Score=88.67 Aligned_cols=45 Identities=22% Similarity=0.388 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHhccccCC---------hhhHHhhhhhhhhhhhhhcccccchHH
Q psy607 67 MKEDLAEWLNNLYVELHMN---------VANFMDRLDTGVTLCRGKSTFFKSSIK 112 (129)
Q Consensus 67 MkEDLaeWI~~Ll~Ge~i~---------~DnF~e~LkdGvlLCkLAN~LqpGSV~ 112 (129)
+-.+.++||++++ +++.+ +++|.+.|+|||+||+|+|+|+||+|.
T Consensus 6 ~w~~~~~Wl~~~~-~l~~~~~~~~~~~~~~~l~~~L~~G~~Lc~l~n~l~p~~v~ 59 (587)
T 3ky9_A 6 LWRQCTHWLIQCR-VLPPSHRVTWEGAQVCELAQALRDGVLLCQLLNNLLPHAIN 59 (587)
T ss_dssp HHHHHHHHHHHTT-CSCTTSTTTSTTCCHHHHHHHHSSTHHHHHHHHHHSTTSSC
T ss_pred HHHHHHHHHHHhC-CCCCcccccCCCCChhhHHHHhCcHHHHHHHHHHhCCCCCC
Confidence 3458999999987 55554 689999999999999999999999984
No 15
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=1.2e-08 Score=73.32 Aligned_cols=55 Identities=16% Similarity=0.172 Sum_probs=46.8
Q ss_pred CCCcHHHhHHhHHHHHHHHHHHhcccc-C--ChhhHHhhhhhhhhhhhhhcccccchHH
Q psy607 57 FKSSEEYLYAMKEDLAEWLNNLYVELH-M--NVANFMDRLDTGVTLCRGKSTFFKSSIK 112 (129)
Q Consensus 57 fKssekyL~aMkEDLaeWI~~Ll~Ge~-i--~~DnF~e~LkdGvlLCkLAN~LqpGSV~ 112 (129)
-|+..++....+..+.+|||..+ ++. + ..++|++.|+||++||+|+|.|.|+++.
T Consensus 9 ~~~~~~~~~~q~~~f~~WIN~~L-~~~~~~~~v~dl~~dL~DGv~L~~Lle~L~~~~l~ 66 (129)
T 2yrn_A 9 RKPVIHGLEDQKRIYTDWANHYL-AKSGHKRLIRDLQQDVTDGVLLAQIIQVVANEKIE 66 (129)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHH-HHTCCCSCCSCHHHHSSSSHHHHHHHHHHTTCCCT
T ss_pred hcccchhhHHHHHHHHHHHHHHh-cccCCCccchhHHHHcccHHHHHHHHHHHhcCCcc
Confidence 34667777888889999999999 543 3 3689999999999999999999999886
No 16
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Probab=98.43 E-value=9.8e-08 Score=75.51 Aligned_cols=54 Identities=20% Similarity=0.407 Sum_probs=43.9
Q ss_pred CCcHHHhHHhHHHHHHHHHHHhccc--------cC--ChhhHHhhhhhhhhhhhhhcccccchHH
Q psy607 58 KSSEEYLYAMKEDLAEWLNNLYVEL--------HM--NVANFMDRLDTGVTLCRGKSTFFKSSIK 112 (129)
Q Consensus 58 KssekyL~aMkEDLaeWI~~Ll~Ge--------~i--~~DnF~e~LkdGvlLCkLAN~LqpGSV~ 112 (129)
++..+|....+..+..|||..+ ++ ++ ..++|++.|+||++||+|+|+|.|+++.
T Consensus 16 ~~~~~~~~~q~~~f~~WiN~~L-~~~~~~~~~~~i~~~v~dl~~dL~DGv~L~~Lle~l~~~~v~ 79 (275)
T 1aoa_A 16 GTQHSYSEEEKYAFVNWINKAL-ENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTID 79 (275)
T ss_dssp -----CCHHHHHHHHHHHHHHT-TTCTTSTTTCSCCTTTTHHHHHGGGSHHHHHHHHHHSTTSSC
T ss_pred CCccccCHHHHHHHHHHHHHHh-ccCccccccCCCCCccchHHHHhccHHHHHHHHHHhcCCCCC
Confidence 4567888899999999999999 65 34 3579999999999999999999999885
No 17
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K
Probab=98.20 E-value=3.9e-07 Score=71.93 Aligned_cols=54 Identities=9% Similarity=0.172 Sum_probs=44.6
Q ss_pred CcHHHhHHhHHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchHH
Q psy607 59 SSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIK 112 (129)
Q Consensus 59 ssekyL~aMkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~ 112 (129)
...++....+.....|||.++.+.....++|++.|+||++||+|+|.|.|+.+.
T Consensus 20 ~~~~~~~~q~~~f~~WiN~~L~~~~~~v~~l~~dl~DGv~L~~Lle~l~~~~v~ 73 (254)
T 1wku_A 20 LDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLP 73 (254)
T ss_dssp ---CHHHHHHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHCSCCC
T ss_pred hhccchHHHHHHHHHHHHHHccccCCCccCHHHHccCHHHHHHHHHHhCcCCCC
Confidence 355677777889999999999544567789999999999999999999999875
No 18
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=98.20 E-value=6.1e-07 Score=76.67 Aligned_cols=53 Identities=13% Similarity=0.221 Sum_probs=44.0
Q ss_pred cHHHhHHhHHHHHHHHHHHhcccc--------C--ChhhHHhhhhhhhhhhhhhcccccchHHH
Q psy607 60 SEEYLYAMKEDLAEWLNNLYVELH--------M--NVANFMDRLDTGVTLCRGKSTFFKSSIKE 113 (129)
Q Consensus 60 sekyL~aMkEDLaeWI~~Ll~Ge~--------i--~~DnF~e~LkdGvlLCkLAN~LqpGSV~~ 113 (129)
..+|....+..+.+|||..+ ++. + ..++|++.|+||++||+|+|+|.|+++..
T Consensus 6 ~~~~~~~q~~~f~~WIN~~L-~~~~~~~~~lpi~~~v~dl~~dL~DG~~L~~Lie~l~~~~i~~ 68 (513)
T 1rt8_A 6 MHTINEEERREFIKHINSVL-AGDPDVGSRVPINTETFEFFDQCKDGLILSKLINDSVPDTIDE 68 (513)
T ss_dssp ---CCHHHHHHHHHHHHHHH-TTCTTTGGGCSCCTTSTHHHHHTTTSHHHHHHHHHHSTTSSCG
T ss_pred cCcccHHHHHHHHHHHHHhc-cCCccccccCCCCCchHHHHHHhhcHHHHHHHHHHHcCCCcch
Confidence 46788899999999999999 653 3 35699999999999999999999998863
No 19
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Probab=98.17 E-value=6.7e-07 Score=76.15 Aligned_cols=49 Identities=14% Similarity=0.249 Sum_probs=40.1
Q ss_pred HhHHhHHHHHHHHHHHhcccc--------C--ChhhHHhhhhhhhhhhhhhcccccchHH
Q psy607 63 YLYAMKEDLAEWLNNLYVELH--------M--NVANFMDRLDTGVTLCRGKSTFFKSSIK 112 (129)
Q Consensus 63 yL~aMkEDLaeWI~~Ll~Ge~--------i--~~DnF~e~LkdGvlLCkLAN~LqpGSV~ 112 (129)
+..+.+..+.+|||..+ ++. + ..++|++.|+||++||+|+|+|.|+++.
T Consensus 4 ~~~~q~~~f~~WIN~~L-~~~~~~~~~l~~~~~v~~l~~dL~DGv~L~~Lin~l~~~~i~ 62 (506)
T 1pxy_A 4 GIQSEKGPFVQHINRYL-GDDPFLKQFLPLDPHSNQLYELVKDGVLLCKLINVAVPGTID 62 (506)
T ss_dssp ---CTHHHHHHHHHHHH-TTCTTTTTTCSCCTTSSHHHHHSTTSHHHHHHHHHHSTTSSC
T ss_pred CCHHHHHHHHHHHHHHh-ccCccccccCCCCCchhHHHHHhcchHHHHHHHHHHcCCCCC
Confidence 44566778999999999 654 2 3569999999999999999999999985
No 20
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Probab=98.16 E-value=5.4e-07 Score=70.48 Aligned_cols=54 Identities=11% Similarity=0.223 Sum_probs=44.4
Q ss_pred CCcHHHhHHhHHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchH
Q psy607 58 KSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSI 111 (129)
Q Consensus 58 KssekyL~aMkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV 111 (129)
....++....+.....|||..+.+......++++.|+||++||+|+|+|.++.+
T Consensus 12 ~~~~~~~~~q~~~f~~WiN~~L~~~~~~v~dl~~dL~DGv~L~~Lle~L~~~~~ 65 (245)
T 2wa7_A 12 AEDAPWKKIQQNTFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRM 65 (245)
T ss_dssp ---CGGGGHHHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTCCC
T ss_pred hccchHHHHHHHHHHHHHHHhccccCCCccCHHHHcccHHHHHHHHHHHcCCCC
Confidence 345577778888999999999954455677999999999999999999999877
No 21
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}
Probab=98.06 E-value=1.2e-06 Score=71.61 Aligned_cols=58 Identities=14% Similarity=0.277 Sum_probs=50.0
Q ss_pred CCCCCcHHHhHHhHHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchHH
Q psy607 55 RPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIK 112 (129)
Q Consensus 55 rpfKssekyL~aMkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~ 112 (129)
...|.++++....+.....|||..+........++++.|+||++||+|.|.|.++.+.
T Consensus 62 ~~~~~~~e~~~vQkktft~WINs~L~~~~~~V~dL~~DL~DGvvL~~Lle~L~~~~l~ 119 (296)
T 3f7p_A 62 AVIRIADERDRVQKKTFTKWVNKHLIKAQRHISDLYEDLRDGHNLISLLEVLSGDSLP 119 (296)
T ss_dssp -CEECCCHHHHHHHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHCCCCC
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHcccCCCCcccHHHHHhhHHHHHHHHHHhcCCccc
Confidence 4558889999999999999999999434457789999999999999999999998764
No 22
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Probab=97.96 E-value=2.5e-06 Score=66.24 Aligned_cols=51 Identities=16% Similarity=0.259 Sum_probs=43.4
Q ss_pred HHHhHHhHHHHHHHHHHHhccc------cCChhhHHhhhhhhhhhhhhhcccccchHH
Q psy607 61 EEYLYAMKEDLAEWLNNLYVEL------HMNVANFMDRLDTGVTLCRGKSTFFKSSIK 112 (129)
Q Consensus 61 ekyL~aMkEDLaeWI~~Ll~Ge------~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~ 112 (129)
.++....+.....|||..+ +. +....+|++.|+||++||+|+|.|.++.+.
T Consensus 7 ~e~~~~q~~~f~~WiN~~L-~~~~~~~~~~~v~dl~~dl~DG~~L~~Lle~l~~~~~~ 63 (245)
T 1sh5_A 7 DERDRVQKKTFTKWVNKHL-IKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLP 63 (245)
T ss_dssp CHHHHHHHHHHHHHHHHHH-TTCSSGGGCCCCSCTTTTTTTSHHHHHHHHHHHCCCCC
T ss_pred hhHHHHHHHHHHHHHHHhc-cccccccCCCCccchHhhccCHHHHHHHHHHhcCcccc
Confidence 4566777889999999999 55 346779999999999999999999998764
No 23
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Probab=97.80 E-value=3.9e-06 Score=65.50 Aligned_cols=54 Identities=17% Similarity=0.258 Sum_probs=43.9
Q ss_pred CCcHHHhHHhHHHHHHHHHHHhcccc-C-ChhhHHhhhhhhhhhhhhhcccccchHH
Q psy607 58 KSSEEYLYAMKEDLAEWLNNLYVELH-M-NVANFMDRLDTGVTLCRGKSTFFKSSIK 112 (129)
Q Consensus 58 KssekyL~aMkEDLaeWI~~Ll~Ge~-i-~~DnF~e~LkdGvlLCkLAN~LqpGSV~ 112 (129)
....++....+.....|||..+ +.. . ...+|++.|+||++||+|+|+|.++.+.
T Consensus 8 ~~~~e~~~~q~~~f~~WiN~~L-~~~~~~~v~dl~~dl~DG~~L~~Lle~l~~~~~~ 63 (246)
T 1dxx_A 8 EDSYEREDVQKKTFTKWVNAQF-SKFGKQHIENLFSDLQDGRRLLDLLEGLTGQKLP 63 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHHHHH-HHTTCCCCSCTTTTTTTSHHHHHHHHHHHSCCCC
T ss_pred ccchHHHHHHHHHHHHHHHHhc-cccCCCCccCHHHHhCcHHHHHHHHHHHcCCcCC
Confidence 3456677788889999999999 543 2 5678999999999999999999887653
No 24
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=97.52 E-value=1.7e-05 Score=69.38 Aligned_cols=52 Identities=10% Similarity=0.187 Sum_probs=44.0
Q ss_pred HHHhHHhHHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchHH
Q psy607 61 EEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIK 112 (129)
Q Consensus 61 ekyL~aMkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~ 112 (129)
.++....+.....|||.++.+..+...++++.|+||++||+|.|.|.|+.+.
T Consensus 3 ~~~~~~q~~~f~~Win~~L~~~~~~v~~l~~dl~DG~~L~~l~e~l~~~~~~ 54 (863)
T 1sjj_A 3 PAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLA 54 (863)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHCSCCCCCSSTTSSCHHHHHHHHHTSCCCCC
T ss_pred hHHHHHHHHHHHHHHHHHhccCCCCccCHHHHhcCHHHHHHHHHHhCCCcee
Confidence 3455666778999999999655567789999999999999999999999774
No 25
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A
Probab=97.36 E-value=5.8e-05 Score=60.91 Aligned_cols=53 Identities=13% Similarity=0.235 Sum_probs=43.3
Q ss_pred CcHHHhHHhHHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchH
Q psy607 59 SSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSI 111 (129)
Q Consensus 59 ssekyL~aMkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV 111 (129)
...++....+.-...|||..+.+......++++.|+||++||+|.+.|.++.+
T Consensus 40 ~d~~w~~vQkktft~WiN~~L~~~~~~V~dL~~DL~DGv~L~~Lle~Ls~~~l 92 (272)
T 3hoc_A 40 EDAPWKKIQQNTFTRWCNEHLKCVSKRIANLQTDLSDGLRLIALLEVLSQKKM 92 (272)
T ss_dssp --CGGGGHHHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTSCC
T ss_pred hChhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHhhHHHHHHHHHHHcCCcc
Confidence 34455556666799999999865566788999999999999999999999877
No 26
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=97.28 E-value=6.8e-05 Score=64.06 Aligned_cols=45 Identities=18% Similarity=0.394 Sum_probs=38.3
Q ss_pred HhHHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchHH
Q psy607 66 AMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIK 112 (129)
Q Consensus 66 aMkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~ 112 (129)
..+.....|||++. .+...++|++.|+||++||+|.+++.||++.
T Consensus 285 ~q~k~f~~WiN~~~--~~~~v~~l~~DL~DG~~L~~Lle~l~~g~v~ 329 (513)
T 1rt8_A 285 REARVFTLWLNSLD--VTPSIHDFFNNLRDGLILLQAYDKITPNTVN 329 (513)
T ss_dssp HHHHHHHHHHHHTT--CSSCCSCHHHHTTTSHHHHHHHHHHSTTCCC
T ss_pred HHHHHHHHHHHhcC--CCCCccCHHHHHhhHHHHHHHHHHhCCCCcc
Confidence 34567899999985 4556789999999999999999999999874
No 27
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*
Probab=97.07 E-value=0.00017 Score=52.46 Aligned_cols=47 Identities=17% Similarity=0.224 Sum_probs=39.1
Q ss_pred HhHHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchHH
Q psy607 66 AMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIK 112 (129)
Q Consensus 66 aMkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~ 112 (129)
..+.-...|+|..+....+..+++++.|+||++||+|.+.|.++.+.
T Consensus 22 ~q~ktft~WiN~~L~~~~~~v~dL~~Dl~DGv~L~~Lle~ls~~~~~ 68 (131)
T 2vzc_A 22 VVKKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEGYFVP 68 (131)
T ss_dssp HHHHHHHHHHHHHHGGGTCCCCCTTTTTTTSHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHcCCcccCHHHHcccHHHHHHHHHHhcCCCCC
Confidence 44566899999998544567889999999999999999999987664
No 28
>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A
Probab=96.86 E-value=0.00035 Score=57.51 Aligned_cols=49 Identities=20% Similarity=0.526 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchHHHHHHhhcC
Q psy607 68 KEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIKEQRRSYCP 120 (129)
Q Consensus 68 kEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~~~~~~~~p 120 (129)
+.||+.|||+++ ..+++. .|.|.+|++.||++..|.||+|---+..|.+
T Consensus 17 R~elL~WiN~~L-~~~~~k---iEel~tGaayCQlmd~l~P~~i~l~kVkf~a 65 (268)
T 2r8u_A 17 RHDMLAWINESL-QLNLTK---IEQLCSGAAYCQFMDMLFPGSIALKKVKFQA 65 (268)
T ss_dssp HHHHHHHHHHHH-TCCCCC---GGGGGGSHHHHHHHHHHSTTSSCGGGCCTTC
T ss_pred HHHHHHHHHHHh-cCCcch---HHHcccchHHHHHHHHHccCCCchhhccCCC
Confidence 458999999999 877743 4679999999999999999998765555554
No 29
>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=96.85 E-value=0.00032 Score=52.06 Aligned_cols=46 Identities=22% Similarity=0.568 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchHHHHHHhh
Q psy607 68 KEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIKEQRRSY 118 (129)
Q Consensus 68 kEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~~~~~~~ 118 (129)
+-||+.|||+++ ..+++. .|.|.+|++.||+.+.|. |+|---++.|
T Consensus 12 R~elL~WiN~~L-~~n~~k---iEel~tGaayCQl~d~l~-g~v~l~kVkf 57 (127)
T 2qjx_A 12 RTELLTWLNGLL-NLNYKK---IEECGTGAAYCQIMDSIY-GDLPMNRVKF 57 (127)
T ss_dssp HHHHHHHHHHHH-TCCCCS---GGGGGGSHHHHHHHHHHH-CCSCGGGSCT
T ss_pred HHHHHHHHHHHH-cCCccH---HHHccchHHHHHHHhhhc-cccCccccCC
Confidence 459999999999 888866 788999999999999998 5554434444
No 30
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A
Probab=96.80 E-value=0.00028 Score=51.93 Aligned_cols=46 Identities=9% Similarity=0.234 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhc--cccCChhhHH-hhhhhhhhhhhhhcccccchHHH
Q psy607 68 KEDLAEWLNNLYV--ELHMNVANFM-DRLDTGVTLCRGKSTFFKSSIKE 113 (129)
Q Consensus 68 kEDLaeWI~~Ll~--Ge~i~~DnF~-e~LkdGvlLCkLAN~LqpGSV~~ 113 (129)
++++..|.|.-+. |......||- ..|+||+.+|.|.+.|.|++|.+
T Consensus 9 d~~ll~W~N~kl~~~g~~~~I~~F~d~sl~dG~~~l~Ll~~i~P~~vd~ 57 (124)
T 1wjo_A 9 DDIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINY 57 (124)
T ss_dssp CHHHHHHHHHHHHHHTCSCCCSCTTCTTGGGTHHHHHHHHHHSTTSCCT
T ss_pred HHHHHHHHHHHHHhcCCCcccCCCCcchhhhhHHHHHHHHHHCcCccCH
Confidence 4578999999875 5556778999 99999999999999999999864
No 31
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Probab=96.48 E-value=0.00077 Score=57.39 Aligned_cols=46 Identities=20% Similarity=0.237 Sum_probs=38.8
Q ss_pred HHhHHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchHH
Q psy607 65 YAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIK 112 (129)
Q Consensus 65 ~aMkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~ 112 (129)
...+.....|||.++ .+....+|++.|+||++||+|.++|.++++.
T Consensus 275 ~~q~ktf~~WiN~~~--~~~~v~dl~~Dl~DG~~L~~Lle~l~~~~~~ 320 (506)
T 1pxy_A 275 CRDERCYRLWINSLG--IDSYVNNVFEDVRNGWILLEVLDKVSPSSVN 320 (506)
T ss_dssp HHHHHHHHHHHTTTT--CSSCCSCHHHHTTTSHHHHHHHHHHSTTCCC
T ss_pred HHHHHHHHHHHHhcC--CCCCcccHHHHHHhHHHHHHHHHHHcCCccc
Confidence 345567899999986 3466789999999999999999999999875
No 32
>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe}
Probab=96.39 E-value=0.0017 Score=49.44 Aligned_cols=47 Identities=13% Similarity=0.392 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchHHHHHHhhc
Q psy607 68 KEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIKEQRRSYC 119 (129)
Q Consensus 68 kEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~~~~~~~~ 119 (129)
+.||+.|||+++ ..+++. .|.|.+|++.||+...|. |+|.--+..|.
T Consensus 8 R~eLL~WiN~~L-~~n~tk---IE~l~sGAaYCQlmD~lf-g~i~l~kVkf~ 54 (145)
T 4abo_I 8 RQELLAWINQVT-SLGLTR---IEDCGKGYAMIQIFDSIY-QDIPLKKVNFE 54 (145)
T ss_dssp HHHHHHHHHHHH-TCCCCS---GGGGGGSHHHHHHHHHHH-CCSCTTTSCSS
T ss_pred HHHHHHHHHHHc-CCCcch---HHHccccHHHHHHHHHHh-cCcchhhcccC
Confidence 459999999999 777743 467999999999999999 77754444443
No 33
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.20 E-value=0.0016 Score=46.47 Aligned_cols=47 Identities=17% Similarity=0.351 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHhccc-cCChhhHHhhhhhhhhhhhhhcccccchHHH
Q psy607 67 MKEDLAEWLNNLYVEL-HMNVANFMDRLDTGVTLCRGKSTFFKSSIKE 113 (129)
Q Consensus 67 MkEDLaeWI~~Ll~Ge-~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~~ 113 (129)
.++.|+.|.+..+.+- .+...||-...+||..+|.|++.+.|+.+++
T Consensus 10 ~~~~LL~W~~~~~~~y~~v~v~nFs~sw~dG~af~aLi~~~~P~lid~ 57 (119)
T 2d89_A 10 ASQSLLVWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDY 57 (119)
T ss_dssp CHHHHHHHHHHHTTTCSSCCCCCSSHHHHTTHHHHHHHHHHCTTTSCG
T ss_pred HHHHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCcCCh
Confidence 4678999999999532 4677899999999999999999999998753
No 34
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A
Probab=96.00 E-value=0.0018 Score=46.97 Aligned_cols=48 Identities=21% Similarity=0.472 Sum_probs=40.8
Q ss_pred HhHHHHHHHHHHHhccc-cCChhhHHhhhhhhhhhhhhhcccccchHHH
Q psy607 66 AMKEDLAEWLNNLYVEL-HMNVANFMDRLDTGVTLCRGKSTFFKSSIKE 113 (129)
Q Consensus 66 aMkEDLaeWI~~Ll~Ge-~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~~ 113 (129)
..++.|+.|.+..+.+- .+...||-...+||..+|.|++.+.|+.+++
T Consensus 7 ~~k~~LL~W~q~~~~~y~~v~V~nFs~sw~DG~af~aLih~~~P~lid~ 55 (128)
T 2d87_A 7 GIKQMLLDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDY 55 (128)
T ss_dssp CHHHHHHHHHHHHSSSCTTCCCSCTTTTTTSSHHHHHHHHHHCTTTSCS
T ss_pred CHHHHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCcCCH
Confidence 34678999999999532 4678999999999999999999999998753
No 35
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=95.96 E-value=0.0016 Score=53.58 Aligned_cols=41 Identities=15% Similarity=0.317 Sum_probs=35.5
Q ss_pred HHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchH
Q psy607 71 LAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSI 111 (129)
Q Consensus 71 LaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV 111 (129)
...|||+.|.+......++++.|+||++||+|.+.|.+..+
T Consensus 22 Ft~WiN~~L~~~~~~V~dL~~Dl~DG~~L~~Lle~ls~~~l 62 (347)
T 4b7l_A 22 FTRWCNEHLKSVNKRIGNLQTDLSDGLRLIALLEVLSQKRM 62 (347)
T ss_dssp HHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhhCcCCCCcCCHHHHhcCHHHHHHHHHHHcCCcc
Confidence 57899999865566778999999999999999999987765
No 36
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A
Probab=95.83 E-value=0.0032 Score=44.27 Aligned_cols=47 Identities=17% Similarity=0.188 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHhccc-cCChhhHHhhhhhhhhhhhhhcccccchHHH
Q psy607 67 MKEDLAEWLNNLYVEL-HMNVANFMDRLDTGVTLCRGKSTFFKSSIKE 113 (129)
Q Consensus 67 MkEDLaeWI~~Ll~Ge-~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~~ 113 (129)
-++.|+.|.+..+.|- .+...||-...+||..+|.|++.+.|+.+++
T Consensus 4 ~k~~LL~W~q~~~~~y~~v~v~nFs~sw~dG~af~aLih~~~P~lid~ 51 (109)
T 1bkr_A 4 AKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDF 51 (109)
T ss_dssp HHHHHHHHHHHHTTTCTTCCCSSSSGGGTTSHHHHHHHHHHCGGGCCG
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCcccccccHHHHHHHHHHCcCCCCH
Confidence 4678999999997433 3577899999999999999999999998753
No 37
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A
Probab=95.65 E-value=0.0026 Score=45.16 Aligned_cols=46 Identities=15% Similarity=0.330 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHhccc-cCChhhHHhhhhhhhhhhhhhcccccchHH
Q psy607 67 MKEDLAEWLNNLYVEL-HMNVANFMDRLDTGVTLCRGKSTFFKSSIK 112 (129)
Q Consensus 67 MkEDLaeWI~~Ll~Ge-~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~ 112 (129)
-++.|+.|.+..+.+- .+...||-...+||..+|.|++.+.|+.++
T Consensus 8 ~~~~LL~W~q~~~~~y~~v~v~nFs~sw~dG~af~aLih~~~P~lid 54 (116)
T 1wyl_A 8 TQEELLRWCQEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPGLLE 54 (116)
T ss_dssp SHHHHHHHHHHHHHHSTTCCCSCTTTTTTSSHHHHHHHHHHCTTSCC
T ss_pred HHHHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCCCC
Confidence 4678999999997432 367789999999999999999999999875
No 38
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1
Probab=95.57 E-value=0.005 Score=43.89 Aligned_cols=47 Identities=15% Similarity=0.169 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHhccc-cCChhhHHhhhhhhhhhhhhhcccccchHHH
Q psy607 67 MKEDLAEWLNNLYVEL-HMNVANFMDRLDTGVTLCRGKSTFFKSSIKE 113 (129)
Q Consensus 67 MkEDLaeWI~~Ll~Ge-~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~~ 113 (129)
-++-|+.|.+..+.|- .+...||-...+||..+|.|++.+.|+.+++
T Consensus 9 ~~~~LL~W~q~~~~~y~~v~v~nFs~sw~DG~af~aLih~~~P~lid~ 56 (118)
T 1bhd_A 9 SEKILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSW 56 (118)
T ss_dssp HHHHHHHHHHHHHTTSTTCCCCSSSGGGTTSHHHHHHHHHHCGGGSCH
T ss_pred HHHHHHHHHHHHhccCCCCCCCCCcccccCcHHHHHHHHHHCcCcCCH
Confidence 4567899999998543 3677899999999999999999999998864
No 39
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K
Probab=95.28 E-value=0.0059 Score=47.98 Aligned_cols=48 Identities=25% Similarity=0.340 Sum_probs=40.5
Q ss_pred HhHHHHHHHHHHHhccc-cCChhhHHhhhhhhhhhhhhhcccccchHHH
Q psy607 66 AMKEDLAEWLNNLYVEL-HMNVANFMDRLDTGVTLCRGKSTFFKSSIKE 113 (129)
Q Consensus 66 aMkEDLaeWI~~Ll~Ge-~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~~ 113 (129)
..++.|+.|.+..+.|- .+...||-..+.||..+|.|++.+.|+.+.+
T Consensus 140 ~~~~~LL~W~~~~~~~y~~v~v~nFs~s~~DG~a~~aLi~~~~P~~id~ 188 (254)
T 1wku_A 140 SAKEGLLLWCQRKTAPYRNVNVQNFHTSWKDGLALCALIHRHRPDLIDY 188 (254)
T ss_dssp EHHHHHHHHHHHHHTTCTTCCCCSSSGGGTTSHHHHHHHHHHCTTSCCG
T ss_pred cHHHHHHHHHHHHccCCCCCcCCCCccchhhHHHHHHHHHHHCCCcccc
Confidence 34678999999888543 4678999999999999999999999998753
No 40
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Probab=95.19 E-value=0.0087 Score=46.28 Aligned_cols=49 Identities=16% Similarity=0.147 Sum_probs=41.0
Q ss_pred HhHHHHHHHHHHHhccc-cCChhhHHhhhhhhhhhhhhhcccccchHHHH
Q psy607 66 AMKEDLAEWLNNLYVEL-HMNVANFMDRLDTGVTLCRGKSTFFKSSIKEQ 114 (129)
Q Consensus 66 aMkEDLaeWI~~Ll~Ge-~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~~~ 114 (129)
..++.|+.|.+..+.+- .+...||-..++||.++|.|.+.+.|+.+.+-
T Consensus 133 ~~~~~LL~W~~~~~~~~~~~~v~nF~~s~~DG~a~~aLi~~~~P~~i~~~ 182 (245)
T 1sh5_A 133 TAKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPMLIDMN 182 (245)
T ss_dssp CHHHHHHHHHHHHTTTSTTCCCCCSSGGGTTSHHHHHHHHTTCTTTCCHH
T ss_pred CHHHHHHHHHHHHhccCCCcccCCccccccchHHHHHHHHHHCCCCCCHH
Confidence 34667999999998532 46778999999999999999999999988753
No 41
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A
Probab=95.10 E-value=0.0034 Score=44.99 Aligned_cols=46 Identities=17% Similarity=0.280 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHhccc-cCChhhHHhhhhhhhhhhhhhcccccchHH
Q psy607 67 MKEDLAEWLNNLYVEL-HMNVANFMDRLDTGVTLCRGKSTFFKSSIK 112 (129)
Q Consensus 67 MkEDLaeWI~~Ll~Ge-~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~ 112 (129)
-++.|+.|.+..+.+- .+...||-...+||..+|.|++.+.|+.++
T Consensus 10 ~~~~LL~W~q~~~~~y~~v~v~nFs~sw~DG~af~aLih~~~P~lid 56 (121)
T 2d88_A 10 RSSKLLGWCQRQTDGYAGVNVTDLTMSWKSGLALCAIIHRYRPDLID 56 (121)
T ss_dssp SSCHHHHHHHHHSTTSSSCCCCCSSHHHHTSHHHHHHHHHHCTTTSC
T ss_pred HHHHHHHHHHHHhccCCCCCCCCchhhccccHHHHHHHHHhCcCcCC
Confidence 3557899999999432 467789999999999999999999999775
No 42
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens}
Probab=95.06 E-value=0.0045 Score=44.74 Aligned_cols=46 Identities=17% Similarity=0.217 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHhccc-cCChhhHHhhhhhhhhhhhhhcccccchHH
Q psy607 67 MKEDLAEWLNNLYVEL-HMNVANFMDRLDTGVTLCRGKSTFFKSSIK 112 (129)
Q Consensus 67 MkEDLaeWI~~Ll~Ge-~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~ 112 (129)
-++.|+.|.+..+.|- .+...||-...+||..+|.|++.+.|..++
T Consensus 8 ~k~~LL~W~q~~~~~y~~v~V~nFs~sw~DG~Af~aLih~~~P~lid 54 (127)
T 1wyq_A 8 AKDALLLWCQMKTAGYPNVNVHNFTTSWRDGLAFNAIVHKHRPDLLD 54 (127)
T ss_dssp STHHHHHHHHHHHHTSSSCCCSCSSTTSSSSHHHHHHHHHHCTTTCC
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCcccccccHHHHHHHHHHCcCcCC
Confidence 3567899999997433 367789999999999999999999999775
No 43
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Probab=94.92 E-value=0.0087 Score=46.57 Aligned_cols=44 Identities=18% Similarity=0.236 Sum_probs=38.8
Q ss_pred HhHHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchH
Q psy607 66 AMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSI 111 (129)
Q Consensus 66 aMkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV 111 (129)
.-++.|+.|.+..+++ +...||-+.++||..+|.|.+.+.|+.+
T Consensus 143 ~~~~~LL~W~~~~~~~--~~v~nFs~s~~dG~a~~aLi~~~~P~~i 186 (245)
T 2wa7_A 143 TPKQRLLGWIQNKIPY--LPITNFNQNWQDGKALGALVDSCAPGLC 186 (245)
T ss_dssp CHHHHHHHHHHHHSTT--SCCCCSSGGGTTSHHHHHHHHHHSTTSS
T ss_pred cHHHHHHHHHHHhCCC--CCCCCCcccchhhHHHHHHHHHHCcccc
Confidence 3478999999999954 5668999999999999999999999987
No 44
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Probab=94.71 E-value=0.012 Score=45.70 Aligned_cols=48 Identities=17% Similarity=0.203 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHhccc-cCChhhHHhhhhhhhhhhhhhcccccchHHHH
Q psy607 67 MKEDLAEWLNNLYVEL-HMNVANFMDRLDTGVTLCRGKSTFFKSSIKEQ 114 (129)
Q Consensus 67 MkEDLaeWI~~Ll~Ge-~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~~~ 114 (129)
-++.|+.|.+..+.+- .+...||-..++||..+|.|.+.+.|+.+.+-
T Consensus 136 ~~~~LL~W~~~~~~~~~~~~i~nFs~s~~DG~a~~aLi~~~~P~li~~~ 184 (246)
T 1dxx_A 136 SEKILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALIHSHRPDLFDWN 184 (246)
T ss_dssp HHHHHHHHHHHHHTTCTTCCCCSSSGGGTTSHHHHHHHHHHCGGGSCHH
T ss_pred HHHHHHHHHHHHhccCCCCCcCCCcccchhHHHHHHHHHHHCcCccchh
Confidence 4678999999988432 46778999999999999999999999987643
No 45
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}
Probab=94.07 E-value=0.019 Score=46.89 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHhccc-cCChhhHHhhhhhhhhhhhhhcccccchHHHH
Q psy607 67 MKEDLAEWLNNLYVEL-HMNVANFMDRLDTGVTLCRGKSTFFKSSIKEQ 114 (129)
Q Consensus 67 MkEDLaeWI~~Ll~Ge-~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~~~ 114 (129)
-++.|+.|.+..+.+- .+...||-...+||.++|.|++.+.|+.|.+-
T Consensus 190 ~k~~LL~W~n~~~~~y~~v~I~nFs~sw~DG~af~aLI~~~~P~lid~~ 238 (296)
T 3f7p_A 190 AKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKPLLIDMN 238 (296)
T ss_dssp HHHHHHHHHHHHTTTSTTCCCCCSSGGGTTSHHHHHHHHHHCGGGCCHH
T ss_pred HHHHHHHHHHHHhcCCCCCcCCCccccccccHHHHHHHHHHCcCccCHH
Confidence 4667999999998532 46778999999999999999999999988753
No 46
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=93.69 E-value=0.023 Score=46.74 Aligned_cols=44 Identities=18% Similarity=0.236 Sum_probs=38.4
Q ss_pred HhHHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchH
Q psy607 66 AMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSI 111 (129)
Q Consensus 66 aMkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV 111 (129)
..++.|+.|.+.-+++ +...||-...+||..+|.|++.+.|+.+
T Consensus 140 ~~k~~LL~W~~~~~~~--~~v~nF~~sw~DG~af~aLi~~~~P~~~ 183 (347)
T 4b7l_A 140 TPKQRLLGWIQNKIPY--LPITNFNQNWQDGKALGALVDSCAPGLC 183 (347)
T ss_dssp CHHHHHHHHHHHHCTT--SCCCCSSGGGTTSHHHHHHHHHHSTTSS
T ss_pred hHHHHHHHHHHhhCCC--cccCCCCCCccchHHHHHHHHHhCCccc
Confidence 3578899999999855 4558999999999999999999999976
No 47
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A
Probab=93.02 E-value=0.035 Score=44.66 Aligned_cols=44 Identities=18% Similarity=0.276 Sum_probs=38.6
Q ss_pred HhHHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchH
Q psy607 66 AMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSI 111 (129)
Q Consensus 66 aMkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV 111 (129)
.-++.|+.|.+.-++| +...||-...+||..+|.|++.+.|+.+
T Consensus 170 s~k~~LL~W~n~~~~~--~~I~nFs~sw~DG~af~aLi~~~~P~li 213 (272)
T 3hoc_A 170 TPKQRLLGWIQNKLPQ--LPITNFSRDWQSGRALGALVDSCAPGLC 213 (272)
T ss_dssp CHHHHHHHHHHHHCTT--SCCCCSSGGGTTSHHHHHHHHHHSTTSS
T ss_pred CHHHHHHHHHHhhCCC--CCCCChhhcccchHHHHHHHHHhCcccc
Confidence 3578899999999854 5568899999999999999999999987
No 48
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=91.09 E-value=0.038 Score=48.29 Aligned_cols=63 Identities=19% Similarity=0.201 Sum_probs=46.3
Q ss_pred hhhccCCCCCcH---HHhHHhHHHHHHHHHHHhccc-cCChhhHHhhhhhhhhhhhhhcccccchHHH
Q psy607 50 ETRGLRPFKSSE---EYLYAMKEDLAEWLNNLYVEL-HMNVANFMDRLDTGVTLCRGKSTFFKSSIKE 113 (129)
Q Consensus 50 ~~rsirpfKsse---kyL~aMkEDLaeWI~~Ll~Ge-~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~~ 113 (129)
=|.=|+.|..+. +. ...++.|+.|.+..+.|- .+...||-..+.||.++|.|++.+.|+.|.+
T Consensus 103 ~w~l~~~~~~~~~~~~~-~~~~~~ll~W~~~~~~~~~~~~v~nf~~s~~dg~~~~~li~~~~p~~~~~ 169 (863)
T 1sjj_A 103 IWTIILRFAIQDISVEE-TSAKEGLLLWYQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPELIDY 169 (863)
T ss_dssp HHHHHSCCCCCCCCCCC-CCSTTTTHHHHHHHHTTSTTCCCCSSSGGGTTSHHHHHHHHTTCCSSSCS
T ss_pred HHHHHHHHhhcccchhc-cchHHHHHHHHHHhccCCCCCCCCCCccccccHHHHHHHHHHhCCCCcCh
Confidence 344555555432 11 123567999999888543 4677899999999999999999999998753
No 49
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Probab=90.85 E-value=0.082 Score=41.52 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHhc--cccCChhhHHhhhhhhhhhhhhhcccccch
Q psy607 67 MKEDLAEWLNNLYV--ELHMNVANFMDRLDTGVTLCRGKSTFFKSS 110 (129)
Q Consensus 67 MkEDLaeWI~~Ll~--Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGS 110 (129)
-++.|+.|.+..+. |.. ...||-+.++||.++|.|.+.+.|+.
T Consensus 169 ~~~~LL~W~n~~l~~~g~~-~I~nF~~s~~DG~a~~aLi~~~~P~~ 213 (275)
T 1aoa_A 169 PEELLLRWANFHLENSGWQ-KINNFSADIKDSKAYFHLLNQIAPKG 213 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCC-CCSCSSTTTTTSHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHhcCCC-cchhhhhhhhhhHHHHHHHHHHCCCc
Confidence 36779999998763 333 27899999999999999999999983
No 50
>1wix_A HOOK homolog 1, RSGI RUH-026; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.40.3.1
Probab=65.70 E-value=2.7 Score=31.38 Aligned_cols=43 Identities=16% Similarity=0.276 Sum_probs=32.8
Q ss_pred HHhHHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccch
Q psy607 65 YAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSS 110 (129)
Q Consensus 65 ~aMkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGS 110 (129)
..+.+.|.+|++..-.. -..++ ++.|.||++|-+.-+.|.|.-
T Consensus 8 ~~~~~aLl~W~~tf~~~--~~~~~-~~dL~DG~~L~~iL~~IDp~~ 50 (164)
T 1wix_A 8 LPLCDSLIIWLQTFKTA--SPCQD-VKQLTNGVTMAQVLHQIDVAW 50 (164)
T ss_dssp CHHHHHHHHHHTTCCCS--SCCCS-HHHHTTSHHHHHHHHHHCTTT
T ss_pred hHHHHHHHHHHHHcCCC--CCcCc-HHHhccHHHHHHHHHHhCccc
Confidence 45677999999886522 23344 577999999999999999875
No 51
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.96 E-value=4.7 Score=29.37 Aligned_cols=44 Identities=18% Similarity=0.345 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchHH
Q psy607 67 MKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIK 112 (129)
Q Consensus 67 MkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~ 112 (129)
...||..||..+ ..+-..-|+-..+.||+++-.+.+...|..|+
T Consensus 16 e~~el~~WL~~l--~Ls~~~rn~rRDFSdG~lvAEIl~~y~Pk~Vd 59 (127)
T 2ee7_A 16 ALHQLYLWVDNI--PLSRPKRNLSRDFSDGVLVAEVIKFYFPKMVE 59 (127)
T ss_dssp HHHHHHHHHHHS--CCSCCSSCHHHHHTTSHHHHHHHHHHCTTTCC
T ss_pred HHHHHHHHHHcC--CCCCCCCchhhhccchhHHHHHHHHHCcCccc
Confidence 345899999953 45556778999999999998888777776554
No 52
>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster}
Probab=54.77 E-value=10 Score=24.09 Aligned_cols=35 Identities=23% Similarity=0.194 Sum_probs=25.7
Q ss_pred HHHHHHHHHHH-hccccCChhhHHhhhhhhhhhhhhh
Q psy607 68 KEDLAEWLNNL-YVELHMNVANFMDRLDTGVTLCRGK 103 (129)
Q Consensus 68 kEDLaeWI~~L-l~Ge~i~~DnF~e~LkdGvlLCkLA 103 (129)
.+|+.+||..+ . |..-=++.|.+.==||-.|+.|-
T Consensus 8 ~~~V~~WL~~~~~-gl~~y~~~F~~~~I~G~~Ll~L~ 43 (78)
T 3bs7_A 8 VSDVLKWYRRHCG-EYTQYEQLFAQHDITGRALLRIT 43 (78)
T ss_dssp HHHHHHHHHHHSG-GGGGGHHHHHHTTCCHHHHTTCC
T ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHCCCCHHHHhhCC
Confidence 47999999998 4 54445677877666888888763
No 53
>2z16_A Matrix protein 1, M1; AIV-7M1, H5N1, structural genomics; 2.02A {Influenza a virus} PDB: 3md2_A 1ea3_A 1aa7_A
Probab=53.48 E-value=6.1 Score=30.59 Aligned_cols=54 Identities=15% Similarity=0.234 Sum_probs=35.6
Q ss_pred CcccccchhhhhhhhhccCCCCCcHHHhHHhHHHHHHHHHHHhccccCChhhHHhhhhhhhhhh
Q psy607 37 NMAQMATPTATLVETRGLRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLC 100 (129)
Q Consensus 37 ~~~~~a~~~~~~~~~rsirpfKssekyL~aMkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLC 100 (129)
||.-+.++-+|+..--+++|-| .+++++|.+|+. |.+.|-|..||.|||--+|-
T Consensus 7 ~msl~~e~~~y~ls~~p~~p~k------aeia~~l~~~f~----gkntDLealmEWlk~r~~ls 60 (165)
T 2z16_A 7 GMSLLTEVETYVLSIIPSGPLK------AEIAQKLEDVFA----GKNTDLEALMEWLKTRPILS 60 (165)
T ss_dssp CHHHHHHHHHHHHTTSCSSHHH------HHHHHHHHHHHH----TSCCCHHHHHHHHHHCSSCC
T ss_pred cchhHHhhHhhheeeccCCCCc------hHHHHHHHHHHc----ccccCHHHHHHHHhcCcccc
Confidence 5554556666655555545322 345777877764 77899999999999854443
No 54
>1sv0_C Modulator of the activity of ETS CG15085-PA; alpha-helix, 3(10) helix, transcription; 2.07A {Drosophila melanogaster} SCOP: a.60.1.1
Probab=50.94 E-value=14 Score=24.52 Aligned_cols=33 Identities=30% Similarity=0.508 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhc--cccC---ChhhHHhhhhhhhhhhhhh
Q psy607 68 KEDLAEWLNNLYV--ELHM---NVANFMDRLDTGVTLCRGK 103 (129)
Q Consensus 68 kEDLaeWI~~Ll~--Ge~i---~~DnF~e~LkdGvlLCkLA 103 (129)
++|+.+||.-... +.++ +...| + -||-.||.+.
T Consensus 16 ~~~V~~WL~w~~~e~~l~l~~~~~~~f-~--m~G~~Lc~ls 53 (82)
T 1sv0_C 16 RADVWKWLINMAVSEGLEVTAELPQKF-P--MNGKALCLMS 53 (82)
T ss_dssp HHHHHHHHHHHHHHHTCCCCTHHHHTC-C--SCHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhCCCCCCCccccC-C--CCHHHHHhCC
Confidence 5689999976641 3333 22334 2 5999999974
No 55
>1iwp_G Glycerol dehydratase gamma subunit; cobalamin, radical catalysis, lyase; HET: B12; 2.10A {Klebsiella pneumoniae} SCOP: a.23.2.1 PDB: 1mmf_G*
Probab=49.82 E-value=8.6 Score=29.20 Aligned_cols=23 Identities=39% Similarity=0.676 Sum_probs=19.1
Q ss_pred hhccCCCCCcHHHhHHhHHHHHH
Q psy607 51 TRGLRPFKSSEEYLYAMKEDLAE 73 (129)
Q Consensus 51 ~rsirpfKssekyL~aMkEDLae 73 (129)
--.+|||+|..+.|.+++++|..
T Consensus 91 YnaLRP~RSTk~ELl~iA~eLe~ 113 (141)
T 1iwp_G 91 YNALRPFRSSQAELLAIADELEH 113 (141)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHH
T ss_pred HHhhCCCcccHHHHHHHHHHHHH
Confidence 34679999999999999888754
No 56
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens}
Probab=44.93 E-value=10 Score=24.10 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhh
Q psy607 68 KEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRG 102 (129)
Q Consensus 68 kEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkL 102 (129)
.+|+.+||..+=+|..-=.+.|.+.==||-.|+.|
T Consensus 9 ~~~V~~WL~~l~~gl~~Y~~~F~~~~i~G~~Ll~L 43 (80)
T 3bs5_B 9 PSQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRI 43 (80)
T ss_dssp HHHHHHHHHTSCGGGGGGHHHHHHHTCCHHHHHTC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHcCCCHHHHHHC
Confidence 46899999987112222246677665678777765
No 57
>1eex_G Propanediol dehydratase; coenzyme B12, potassium ION, TIM barrel, lyase; HET: COY; 1.70A {Klebsiella oxytoca} SCOP: a.23.2.1 PDB: 1dio_G* 1egm_G* 1egv_G* 1iwb_G* 1uc4_G* 1uc5_G* 3auj_G*
Probab=43.72 E-value=12 Score=29.27 Aligned_cols=23 Identities=39% Similarity=0.709 Sum_probs=19.1
Q ss_pred hhccCCCCCcHHHhHHhHHHHHH
Q psy607 51 TRGLRPFKSSEEYLYAMKEDLAE 73 (129)
Q Consensus 51 ~rsirpfKssekyL~aMkEDLae 73 (129)
--.+|||+|..+.|.+++++|..
T Consensus 123 YnaLRP~RSTK~ELl~iA~eLe~ 145 (173)
T 1eex_G 123 YNALRPYRSTKEELLAIADDLES 145 (173)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHH
T ss_pred HHhhCCCcccHHHHHHHHHHHHH
Confidence 34569999999999999888754
No 58
>1ji7_A ETS-related protein TEL1; helical polymer, transcription; 1.45A {Homo sapiens} SCOP: a.60.1.1 PDB: 2qar_A 2qb0_A 1lky_A 1lky_B 2qb1_A
Probab=43.67 E-value=10 Score=25.84 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhc--c-ccCChhhHHhhhhhhhhhhhhh
Q psy607 68 KEDLAEWLNNLYV--E-LHMNVANFMDRLDTGVTLCRGK 103 (129)
Q Consensus 68 kEDLaeWI~~Ll~--G-e~i~~DnF~e~LkdGvlLCkLA 103 (129)
++++++||.-... + ..++...| =-||-.||.|-
T Consensus 17 ~~~V~~WL~w~~~ef~L~~~~~~~f---~mdGk~Lc~Ls 52 (89)
T 1ji7_A 17 RDDVAQWLKWAENEFSLRPIDSNTF---EMNGKALLLLT 52 (89)
T ss_dssp HHHHHHHHHHHHHHTTCSCCCTTTT---CSCHHHHTTCC
T ss_pred HHHHHHHHHHHHHhcCCCCCchhcC---CCCHHHHHcCC
Confidence 4688999966653 3 22444455 26999999874
No 59
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A
Probab=39.76 E-value=15 Score=24.60 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhh
Q psy607 68 KEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRG 102 (129)
Q Consensus 68 kEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkL 102 (129)
.+|+++||..+. |..-=++.|.+.==||-+|..|
T Consensus 19 ~edV~~wL~~l~-gl~~y~~~F~~~~IdG~~LL~L 52 (89)
T 1kw4_A 19 VDDVSNFIRELP-GCQDYVDDFIQQEIDGQALLRL 52 (89)
T ss_dssp HHHHHHHHHTST-TCGGGHHHHHHTTCCHHHHHHC
T ss_pred HHHHHHHHHHCc-ChHHHHHHHHHhCccHHHHhcC
Confidence 469999999884 4433456777766688877765
No 60
>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers, transcriptional repression, transcription repression; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk3_A
Probab=38.75 E-value=23 Score=23.91 Aligned_cols=35 Identities=17% Similarity=0.148 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhh
Q psy607 68 KEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRG 102 (129)
Q Consensus 68 kEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkL 102 (129)
.+|+++||..+.+|..-=++.|.+-==||-.|..|
T Consensus 19 vedV~~wl~~~~~g~~~y~~~F~~~eIDG~aLL~L 53 (89)
T 1pk1_B 19 IEEVIQYIESNDNSLAVHGDLFRKHEIDGKALLRL 53 (89)
T ss_dssp HHHHHHHHHHHCGGGGGGHHHHHHTTCCHHHHHTC
T ss_pred HHHHHHHHHHHccchHHHHHHHHHcCcChHHHhcC
Confidence 57999999998534333345555544466555544
No 61
>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.61 E-value=9.2 Score=24.67 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhccccCChhhHHhhhhhhhhhhhh
Q psy607 69 EDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRG 102 (129)
Q Consensus 69 EDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkL 102 (129)
+|+++||..+=.|..-=.++|.+.==||-.|+.|
T Consensus 14 ~~V~~WL~~l~~gl~~Y~~~F~~~~I~G~~Ll~L 47 (83)
T 2ean_A 14 SQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRI 47 (83)
T ss_dssp THHHHHHTTSCGGGTTTHHHHHHHTCCHHHHTTC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHCCCCHHHHhhC
Confidence 5889999876111222346777665677777665
No 62
>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=38.32 E-value=14 Score=24.47 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhccc--cCChhhHHhhhhhhhhhhhhh
Q psy607 68 KEDLAEWLNNLYVEL--HMNVANFMDRLDTGVTLCRGK 103 (129)
Q Consensus 68 kEDLaeWI~~Ll~Ge--~i~~DnF~e~LkdGvlLCkLA 103 (129)
.+|+++||..+= . .-=.+.|.+.-=||-+|+.|-
T Consensus 22 ~~dV~~WL~~~g--l~~~~Y~~~F~~~~IdG~~Ll~Lt 57 (91)
T 1v85_A 22 TEEVVLWLEQLG--PWASLYRDRFLSERVNGRLLLTLT 57 (91)
T ss_dssp HHHHHHHHHHHC--GGGHHHHHHHHHTTCCHHHHHHCC
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHhCCCHHHHhcCC
Confidence 469999998863 3 223577877777898888774
No 63
>3o3m_A Alpha subunit 2-hydroxyisocaproyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_A* 3o3o_A
Probab=38.22 E-value=38 Score=27.73 Aligned_cols=36 Identities=14% Similarity=0.200 Sum_probs=29.6
Q ss_pred HHHhHHhHHHHHHHHHHHhccccCChhhHHhhhhhhh
Q psy607 61 EEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGV 97 (129)
Q Consensus 61 ekyL~aMkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGv 97 (129)
-+|...-=+++.++|+.++ |.+||.|.|.++++.--
T Consensus 153 ~~y~~~el~~l~~~LE~~t-G~ki~~e~L~eai~~~N 188 (408)
T 3o3m_A 153 IDYIKAQFEEAIKQLEIIS-GKKFDPKKFEEVMKISA 188 (408)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHH
Confidence 4566666678899999999 99999999988887543
No 64
>2qar_B Telsam domain; polymer, crystallization modules, sterIle alpha motif, hydro regulator; 2.40A {Escherichia coli}
Probab=36.06 E-value=21 Score=24.43 Aligned_cols=32 Identities=22% Similarity=0.364 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhc--c-ccCChhhHHhhhhhhhhhhhh
Q psy607 68 KEDLAEWLNNLYV--E-LHMNVANFMDRLDTGVTLCRG 102 (129)
Q Consensus 68 kEDLaeWI~~Ll~--G-e~i~~DnF~e~LkdGvlLCkL 102 (129)
++|+.+||.-.-. + ..++...| + -||-.||.|
T Consensus 17 ~~~V~~WL~w~~~ef~L~~i~~~~f-~--mdGk~Lc~L 51 (93)
T 2qar_B 17 RDDVAQWLKWAENEFSLSPIDSNTF-E--MNGKALLLL 51 (93)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCGGGG-C--SCHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCCCCcchhcC-C--CCHHHHHcC
Confidence 4577788755442 2 12333333 1 466666665
No 65
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=35.26 E-value=31 Score=22.82 Aligned_cols=24 Identities=13% Similarity=0.256 Sum_probs=18.8
Q ss_pred hHHhHHHHHHHHHHHhc-cccCChh
Q psy607 64 LYAMKEDLAEWLNNLYV-ELHMNVA 87 (129)
Q Consensus 64 L~aMkEDLaeWI~~Ll~-Ge~i~~D 87 (129)
..++++.|.+||...-. |.+++.+
T Consensus 74 ~~~~E~~L~~Wi~~~~~~g~pvs~~ 98 (131)
T 1hlv_A 74 YDKLEGLLIAWFQQIRAAGLPVKGI 98 (131)
T ss_dssp THHHHHHHHHHHHHHGGGTCCCCHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCHH
Confidence 35678999999999885 7777544
No 66
>3gag_A Putative NADH dehydrogenase, NADPH nitroreductase; FMN-dependent nitroreductase-like fold, structural genomics; HET: MSE FMN; 1.70A {Streptococcus mutans} SCOP: d.90.1.0
Probab=34.61 E-value=13 Score=26.37 Aligned_cols=19 Identities=21% Similarity=0.162 Sum_probs=14.5
Q ss_pred ccchhhhhhhhhccCCCCC
Q psy607 41 MATPTATLVETRGLRPFKS 59 (129)
Q Consensus 41 ~a~~~~~~~~~rsirpfKs 59 (129)
|-+.-..+..+||+|-|+.
T Consensus 3 m~~~~~~i~~RrSvR~f~~ 21 (206)
T 3gag_A 3 MNDYLNFLDGRVSVRRFDP 21 (206)
T ss_dssp HHHHHHHHHTCCBCCCBCT
T ss_pred hHHHHHHHHHhhhhhccCC
Confidence 5566677788999998874
No 67
>3pxv_A Nitroreductase; flavoprotein, FMN-dependent, joint center for structural genomics, protein structure initiative, PSI-biology; HET: MSE FMN; 2.30A {Desulfitobacterium hafniense}
Probab=34.00 E-value=16 Score=25.69 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=14.6
Q ss_pred ccchhhhhhhhhccCCCCC
Q psy607 41 MATPTATLVETRGLRPFKS 59 (129)
Q Consensus 41 ~a~~~~~~~~~rsirpfKs 59 (129)
|-+.-..+..+||+|-|+.
T Consensus 3 m~~~~~~i~~RrSvR~f~~ 21 (189)
T 3pxv_A 3 MNETLKVIAERYSCRDFKN 21 (189)
T ss_dssp CCHHHHHHHHCCCCCCBCS
T ss_pred hHHHHHHHHhCeehhcCCC
Confidence 5566677788999998874
No 68
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=33.21 E-value=35 Score=21.69 Aligned_cols=34 Identities=26% Similarity=0.374 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhh
Q psy607 68 KEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGK 103 (129)
Q Consensus 68 kEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLA 103 (129)
.+|+.+||..+ |..==.++|.+.==||..|+.|-
T Consensus 7 ~~~V~~WL~~l--gl~~Y~~~F~~~~idg~~Ll~Lt 40 (76)
T 2f3n_A 7 KFDVGDWLESI--HLGEHRDRFEDHEIEGAHLPALT 40 (76)
T ss_dssp HHHHHHHHHHT--TCGGGHHHHHHTTCCGGGGGGCC
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHcCCCHHHHccCC
Confidence 46899999986 33333466776666788777653
No 69
>1zd1_A Sulfotransferase 4A1; SGC, SULT4A1, structural genomics, structural genomics conso transferase; 2.24A {Homo sapiens}
Probab=33.20 E-value=21 Score=27.19 Aligned_cols=59 Identities=8% Similarity=0.043 Sum_probs=36.5
Q ss_pred HHhHHHHHHHHHHHhc--cccCChhhHHhhhhhhhh-hhhh----hcccccchHHHHHHhhcCccc
Q psy607 65 YAMKEDLAEWLNNLYV--ELHMNVANFMDRLDTGVT-LCRG----KSTFFKSSIKEQRRSYCPEIA 123 (129)
Q Consensus 65 ~aMkEDLaeWI~~Ll~--Ge~i~~DnF~e~LkdGvl-LCkL----AN~LqpGSV~~~~~~~~p~~a 123 (129)
++|++|....+.+|+. |.+++.+....+++.... +-+. ...+..|.+..|+.++.||..
T Consensus 197 EdL~~dp~~~l~~i~~FLGl~~~~~~l~~~~~~~sf~mk~~~~~~~~~~rkg~~g~Wk~~~s~e~~ 262 (284)
T 1zd1_A 197 EDMHRDLVTMVEQLARFLGVSCDKAQLEALTEHCHQLVDQCCNAEALPVGRGRVGLWKDIFTVSMN 262 (284)
T ss_dssp THHHHCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHTTBCTTSSBSSTTCTTGGGGTCCHHHH
T ss_pred HHHHhCHHHHHHHHHHHhCCCCCHHHHHHHHHHCChhhhhCcccCCCcccCCCCCCCcccCCHHHH
Confidence 6788888888888865 777766633332222111 1011 124667899999999888754
No 70
>3o3m_B Beta subunit 2-hydroxyacyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_B* 3o3o_B
Probab=32.69 E-value=45 Score=27.08 Aligned_cols=36 Identities=11% Similarity=0.188 Sum_probs=29.7
Q ss_pred HHHhHHhHHHHHHHHHHHhccccCChhhHHhhhhhhh
Q psy607 61 EEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGV 97 (129)
Q Consensus 61 ekyL~aMkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGv 97 (129)
-+|...-=+++.++|+.++ |.++|.|.|.++++.--
T Consensus 133 ~~y~~~el~~l~~~LE~~t-G~~i~~e~L~eai~~~N 168 (385)
T 3o3m_B 133 VKYLISEYKGVKRELEEIC-GYEIEEAKIHESIEVYN 168 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHH-SSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHH
Confidence 4566666688999999999 99999999988887543
No 71
>1g8e_A Flagellar transcriptional activator FLHD; genetic regulator, DNA binding protein; 1.80A {Escherichia coli} SCOP: a.145.1.1 PDB: 2avu_A
Probab=30.85 E-value=5.6 Score=29.19 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=34.7
Q ss_pred hhhhhccCCCCCcHHHhHHhHHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhh
Q psy607 48 LVETRGLRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRG 102 (129)
Q Consensus 48 ~~~~rsirpfKssekyL~aMkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkL 102 (129)
++..|=||-=|...-+-.-+-+|+++||..+.+ ......=.++++||++
T Consensus 19 lLAQrLir~Dka~A~fRLGis~e~Ad~L~~Lt~------~Ql~kLA~sn~LlCrf 67 (116)
T 1g8e_A 19 LLAQRLIVQDKASAMFRLGINEEMATTLAALTL------PQMVKLAETNQLVCHF 67 (116)
T ss_dssp HHHHHHHHHCHHHHHHHHTCCHHHHHHHHTCCH------HHHHHHHSSSSCSEEE
T ss_pred HHHHHHHHcCHHHHHHHhCCCHHHHHHHHhCCH------HHHHHHhccCceeeee
Confidence 346666776666777778888999999998872 3355555667777763
No 72
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=28.65 E-value=42 Score=21.55 Aligned_cols=32 Identities=28% Similarity=0.329 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhccccCChhhHHhhhhhhhhhhhh
Q psy607 69 EDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRG 102 (129)
Q Consensus 69 EDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkL 102 (129)
+|+.+||..+ |..-=.++|.+.==||..|+.|
T Consensus 13 ~~V~~WL~~l--gl~~Y~~~F~~~~idg~~Ll~L 44 (81)
T 3bq7_A 13 EEVAAWLEHL--SLCEYKDIFTRHDIRGSGLLHL 44 (81)
T ss_dssp HHHHHHHHHT--TCGGGHHHHHHTTCCHHHHTTC
T ss_pred HHHHHHHHHC--CCHHHHHHHHHcCCCHHHHCcC
Confidence 6899999986 3333456787766688887766
No 73
>1sv0_A ETS DNA-binding protein pokkuri; alpha-helix, 3(10) helix, transcription; 2.07A {Drosophila melanogaster} SCOP: a.60.1.1 PDB: 1sv4_A
Probab=27.97 E-value=35 Score=23.03 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhc--ccc-CChhhHHhhhhhhhhhhhhh
Q psy607 68 KEDLAEWLNNLYV--ELH-MNVANFMDRLDTGVTLCRGK 103 (129)
Q Consensus 68 kEDLaeWI~~Ll~--Ge~-i~~DnF~e~LkdGvlLCkLA 103 (129)
++++.+||.=... +.+ ++.++| =-||--||++-
T Consensus 15 ~~~V~~WL~W~~~ef~L~~i~~~~F---~m~G~~LC~ls 50 (85)
T 1sv0_A 15 REDVLVFLRFCVREFDLPKLDFDLF---QMNGKRLCLLT 50 (85)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCGGGG---CSCHHHHTTCC
T ss_pred HHHHHHHHHHHHHccCCCCCChhhC---CCCHHHHHcCC
Confidence 4577777765442 322 466677 27999999873
No 74
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=26.23 E-value=53 Score=22.24 Aligned_cols=54 Identities=15% Similarity=0.238 Sum_probs=35.7
Q ss_pred ccccchhhhhhhhhccCCCCCcHHHhHHhHHHHHHHHHHHhccccCChhhHHhhhhh
Q psy607 39 AQMATPTATLVETRGLRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDT 95 (129)
Q Consensus 39 ~~~a~~~~~~~~~rsirpfKssekyL~aMkEDLaeWI~~Ll~Ge~i~~DnF~e~Lkd 95 (129)
|.-++.+.|+-+. ||-....+..+..++..+.+++++-- +.++++|.|+..++.
T Consensus 25 G~Y~s~SEviR~~--lR~l~~re~~l~~Lr~~l~~G~~Sg~-~~~~d~d~v~a~~~~ 78 (88)
T 3kxe_C 25 GRYGSASEVIRAG--LRLLEENEAKLAALRAALIEGEESGF-IEDFDFDAFIEERSR 78 (88)
T ss_dssp TSCSSHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTCE-ESSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHH--HHHHHHHhHHHHHHHHHHHHHHHCCC-CCCCCHHHHHHHHHH
Confidence 3345555553321 22222335667889999999998866 777899999988875
No 75
>3hoi_A FMN-dependent nitroreductase BF3017; YP_212631.1, structural genomics, joint center for S genomics, JCSG; HET: MSE FMN FLC; 1.55A {Bacteroides fragilis nctc 9343}
Probab=25.65 E-value=35 Score=23.79 Aligned_cols=44 Identities=20% Similarity=0.164 Sum_probs=25.7
Q ss_pred cCCCchhhccCcccccchhhhhhhhhccCCCCCcHHHhHHhHHHHHHHHHHH
Q psy607 27 IPYPNWHQLMNMAQMATPTATLVETRGLRPFKSSEEYLYAMKEDLAEWLNNL 78 (129)
Q Consensus 27 ~~~p~~~~~~~~~~~a~~~~~~~~~rsirpfKssekyL~aMkEDLaeWI~~L 78 (129)
|++|......+| +....+..+||+|.|+.. .- =+|+|.+-|...
T Consensus 6 i~Lp~p~~~~~~----~~~~~i~~RrS~R~f~~~-~v---~~e~l~~il~~a 49 (193)
T 3hoi_A 6 IQLPKPDMNRAG----LLMKALSERHSTREYASK-AL---SNTDLSDLLWAA 49 (193)
T ss_dssp EECCCCCTTCSC----CHHHHHHHCCCCCCCCSS-CC---CHHHHHHHHHHH
T ss_pred eeCCCCCCCCCC----CHHHHHhhcCCccccCCC-CC---CHHHHHHHHHHh
Confidence 566665332222 456667899999999843 22 244555555554
No 76
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.56 E-value=38 Score=22.81 Aligned_cols=34 Identities=18% Similarity=0.104 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhccccC--ChhhHHhhhhhhhhhhhhh
Q psy607 68 KEDLAEWLNNLYVELHM--NVANFMDRLDTGVTLCRGK 103 (129)
Q Consensus 68 kEDLaeWI~~Ll~Ge~i--~~DnF~e~LkdGvlLCkLA 103 (129)
.+|+++||..+ |..- =.+.|.+.==||-+|+.|-
T Consensus 32 ~~~V~~WL~~l--gl~~~~y~~~F~~~~I~G~~Ll~Lt 67 (103)
T 2e8o_A 32 PEQVCSFLRRG--GFEEPVLLKNIRENEITGALLPCLD 67 (103)
T ss_dssp HHHHHHHHHHH--TCCCHHHHHHHHHTTCCTTTTTTCC
T ss_pred HHHHHHHHHHc--CCChHHHHHHHHHcCCCHHHHHhCC
Confidence 47999999986 3332 3567777667888887763
No 77
>1sxd_A GA repeat binding protein, alpha; alpha helical, transcription, signaling protein; NMR {Mus musculus} SCOP: a.60.1.1
Probab=25.38 E-value=38 Score=23.10 Aligned_cols=33 Identities=12% Similarity=0.385 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhc--ccc-CChhhHHhhhhhhhhhhhhh
Q psy607 68 KEDLAEWLNNLYV--ELH-MNVANFMDRLDTGVTLCRGK 103 (129)
Q Consensus 68 kEDLaeWI~~Ll~--Ge~-i~~DnF~e~LkdGvlLCkLA 103 (129)
++++.+||.=... +.+ ++.++| =-||--||++-
T Consensus 28 ~~~V~~WL~W~~~ef~L~~v~~~~f---~m~G~~LC~ls 63 (91)
T 1sxd_A 28 TDQVLHWVVWVMKEFSMTDIDLTTL---NISGRELCSLN 63 (91)
T ss_dssp HHHHHHHHHHHHHHTTCCCSCSGGG---CSCHHHHHHSC
T ss_pred HHHHHHHHHHHHHccCCCCCChhhC---CCCHHHHHcCC
Confidence 5677777765542 322 455566 36999999974
No 78
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2
Probab=24.73 E-value=33 Score=23.46 Aligned_cols=31 Identities=19% Similarity=0.254 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhh
Q psy607 68 KEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRG 102 (129)
Q Consensus 68 kEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkL 102 (129)
.||+++||..+- ..--++.| .. =||-+|..|
T Consensus 22 ~edV~~WL~~~G--l~~Y~~~F-~~-IdG~~LL~L 52 (97)
T 2d8c_A 22 PKKVADWLLENA--MPEYCEPL-EH-FTGQDLINL 52 (97)
T ss_dssp TTHHHHHHHHTT--CTTTTTTT-TT-CCHHHHHTC
T ss_pred HHHHHHHHHHcC--CHHHHHHH-Hc-CCCHHHhcC
Confidence 458899998752 22223556 44 566666555
No 79
>3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Drosophila melanogaster}
Probab=23.78 E-value=56 Score=22.39 Aligned_cols=35 Identities=23% Similarity=0.195 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhh
Q psy607 68 KEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRG 102 (129)
Q Consensus 68 kEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkL 102 (129)
.+|+.+||..+.+|..-=.+.|.+.==||-.|-.|
T Consensus 28 ~~~V~~WL~~~~~gl~~Y~~~F~~~~I~G~~Ll~L 62 (106)
T 3bs5_A 28 VSDVLKWYRRHCGEYTQYEQLFAQHDITGRALLRI 62 (106)
T ss_dssp HHHHHHHHHHHSGGGGGGHHHHHHTTCCHHHHTTC
T ss_pred HHHHHHHHHHHHcchHHHHHHHHHcCccHHHHhhC
Confidence 47999999999444333457777766677666555
No 80
>3bem_A Putative NAD(P)H nitroreductase YDFN; 2632848, putative nitroreductase YDFN, structural genomics, center for structural genomics, JCSG; HET: MSE FMN; 1.65A {Bacillus subtilis}
Probab=23.74 E-value=29 Score=24.98 Aligned_cols=19 Identities=37% Similarity=0.284 Sum_probs=15.5
Q ss_pred ccchhhhhhhhhccCCCCC
Q psy607 41 MATPTATLVETRGLRPFKS 59 (129)
Q Consensus 41 ~a~~~~~~~~~rsirpfKs 59 (129)
||+.-..+..+||+|.|+.
T Consensus 13 ~~~~~~~i~~RrSvR~f~~ 31 (218)
T 3bem_A 13 MAEFTHLVNERRSASNFLS 31 (218)
T ss_dssp HHHHHHHHHHCCCCSCCCS
T ss_pred HHHHHHHHHhCchhhccCC
Confidence 6667777889999999974
No 81
>2e8p_A ELF3 protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.62 E-value=37 Score=23.48 Aligned_cols=33 Identities=18% Similarity=0.411 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhc--cc---cCChhhHHhhhhhhhhhhhhh
Q psy607 68 KEDLAEWLNNLYV--EL---HMNVANFMDRLDTGVTLCRGK 103 (129)
Q Consensus 68 kEDLaeWI~~Ll~--Ge---~i~~DnF~e~LkdGvlLCkLA 103 (129)
++++.+||.=..- +. .|+..+| -=||--||++.
T Consensus 29 ~~~V~~WL~Wavke~~~dl~~i~~~~f---~m~G~~LC~ms 66 (92)
T 2e8p_A 29 KTQVLDWISYQVEKNKYDASAIDFSRC---DMDGATLCNCA 66 (92)
T ss_dssp HHHHHHHHHHHHHHTTCCCSSCCTTTC---CCCSHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCCCCCCCChhhc---CCCHHHHHcCC
Confidence 6788999887741 22 4566666 35999999974
No 82
>3si5_X Protein CASC5; BUBR1-blinkin complex, mitotic checkpoint, BUBR1, blinkin/KN chromosome segregation, cell cycle; 2.20A {Homo sapiens}
Probab=23.39 E-value=28 Score=19.32 Aligned_cols=16 Identities=38% Similarity=0.754 Sum_probs=13.3
Q ss_pred cccCChhhHHhhhhhh
Q psy607 81 ELHMNVANFMDRLDTG 96 (129)
Q Consensus 81 Ge~i~~DnF~e~LkdG 96 (129)
..+|+.++|...||.|
T Consensus 8 ekKinfndFIKRLK~g 23 (24)
T 3si5_X 8 ENKIDFNDFIKRLKTG 23 (26)
T ss_pred hhhccHHHHHHHHhcC
Confidence 4567889999999987
No 83
>3bfx_A Sulfotransferase 1C2; PAP, structural genomics, PSI, protein structure initiative, structural genomics consortium, SGC, alternative splicing; HET: A3P; 1.80A {Homo sapiens} SCOP: c.37.1.5
Probab=22.92 E-value=36 Score=26.10 Aligned_cols=55 Identities=7% Similarity=0.017 Sum_probs=34.0
Q ss_pred HHhHHHHHHHHHHHhc--cccCChhhHHhhhhhhhhhhhh-----------------------hcccccchHHHHHHhhc
Q psy607 65 YAMKEDLAEWLNNLYV--ELHMNVANFMDRLDTGVTLCRG-----------------------KSTFFKSSIKEQRRSYC 119 (129)
Q Consensus 65 ~aMkEDLaeWI~~Ll~--Ge~i~~DnF~e~LkdGvlLCkL-----------------------AN~LqpGSV~~~~~~~~ 119 (129)
++|++|....+.+|+. |.+++.+....++ -.|.. ...+..|.+..|+.++.
T Consensus 195 EdL~~dp~~~~~ri~~FLG~~~~~~~l~~i~----~~~sf~~mk~~~~~~~~~~~~~~~~~~~~~f~RkG~vg~Wk~~lt 270 (296)
T 3bfx_A 195 EDIKRDPKHEIRKVMQFMGKKVDETVLDKIV----QETSFEKMKENPMTNRSTVSKSILDQSISSFMRKGTVGDWKNHFT 270 (296)
T ss_dssp HHHHHCHHHHHHHHHHHTTCCCCHHHHHHHH----HHTSHHHHHHC-------------------CCCCCCSCTHHHHCC
T ss_pred HHHHhhhHHHHHHHHHHhCCCCCHHHHHHHH----HHCCHHHHHhchhhccccccccccccccccceeCCCCCCCcccCC
Confidence 6778888888888765 7777765432211 11211 12355678888998888
Q ss_pred Cccc
Q psy607 120 PEIA 123 (129)
Q Consensus 120 p~~a 123 (129)
||..
T Consensus 271 ~e~~ 274 (296)
T 3bfx_A 271 VAQN 274 (296)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
No 84
>1q44_A RARO47, steroid sulfotransferase, AT2G03760/; APO, structu genomics, protein structure initiative, center for eukaryot structural genomics; 1.90A {Arabidopsis thaliana} SCOP: c.37.1.5 PDB: 2q3m_A
Probab=22.56 E-value=41 Score=26.51 Aligned_cols=56 Identities=20% Similarity=0.157 Sum_probs=29.5
Q ss_pred HHhHHHHHHHHHHHhc--cccCChhhHHhhhhhhhhhhhh--------------------hcccccchHHHHHHhhcCcc
Q psy607 65 YAMKEDLAEWLNNLYV--ELHMNVANFMDRLDTGVTLCRG--------------------KSTFFKSSIKEQRRSYCPEI 122 (129)
Q Consensus 65 ~aMkEDLaeWI~~Ll~--Ge~i~~DnF~e~LkdGvlLCkL--------------------AN~LqpGSV~~~~~~~~p~~ 122 (129)
++|++|....|.+|+. |.+++.+.- ++.=+-.|.. ...+..|.+..|+.+|.||.
T Consensus 229 EDL~~Dp~~~v~ri~~FLG~~~~~~~~---l~~iv~~~sf~~mk~~~~~~~~~~~~~~~~~~f~RkG~vGdWkn~~t~e~ 305 (326)
T 1q44_A 229 EELKKQTEVEMKRIAEFLECGFIEEEE---VREIVKLCSFESLSNLEVNKEGKLPNGIETKTFFRKGEIGGWRDTLSESL 305 (326)
T ss_dssp HHHHHTHHHHHHHHHHHHCSSCCCHHH---HHHHHHHHTTC-----------------------------CHHHHSCHHH
T ss_pred HHHHhCHHHHHHHHHHHhCCCCChHHH---HHHHHHhCCHHHHHhHhhhccccccccCCCCceeeCCCCCCCccCCCHHH
Confidence 6788888888888865 787765530 2222222211 11355677888888888875
Q ss_pred c
Q psy607 123 A 123 (129)
Q Consensus 123 a 123 (129)
.
T Consensus 306 ~ 306 (326)
T 1q44_A 306 A 306 (326)
T ss_dssp H
T ss_pred H
Confidence 4
No 85
>3gbh_A NAD(P)H-flavin oxidoreductase; putative NAD(P)H:FMN oxidoreductase, structural genomics, JO center for structural genomics; HET: MSE FMN PGE; 2.00A {Staphylococcus epidermidis atcc 12228} SCOP: d.90.1.0
Probab=21.27 E-value=47 Score=23.63 Aligned_cols=19 Identities=11% Similarity=0.223 Sum_probs=14.1
Q ss_pred cchhhhhhhhhccCCCCCc
Q psy607 42 ATPTATLVETRGLRPFKSS 60 (129)
Q Consensus 42 a~~~~~~~~~rsirpfKss 60 (129)
.+....+..+||+|-|+..
T Consensus 9 ~~~~~~i~~RrSvR~f~~~ 27 (213)
T 3gbh_A 9 NDFNEVLNSRKSVKVFDEN 27 (213)
T ss_dssp CBHHHHHHHCCBCCCBCTT
T ss_pred HHHHHHHHhhhhHhhcCCC
Confidence 4556667899999988753
No 86
>2reo_A Putative sulfotransferase 1C3; sulfate conjugation, PAP, structural genom consortium, SGC; HET: A3P; 2.65A {Homo sapiens} PDB: 2h8k_A*
Probab=21.07 E-value=32 Score=26.55 Aligned_cols=55 Identities=7% Similarity=-0.032 Sum_probs=34.4
Q ss_pred HHhHHHHHHHHHHHhc--cccCChhhHHhhhhhhhhhhhhh-----------------------cccccchHHHHHHhhc
Q psy607 65 YAMKEDLAEWLNNLYV--ELHMNVANFMDRLDTGVTLCRGK-----------------------STFFKSSIKEQRRSYC 119 (129)
Q Consensus 65 ~aMkEDLaeWI~~Ll~--Ge~i~~DnF~e~LkdGvlLCkLA-----------------------N~LqpGSV~~~~~~~~ 119 (129)
++|++|....+.+|+. |.+++.+... .-+-.|... ..+..|.+..|+.++.
T Consensus 204 EdL~~dp~~~v~ri~~FLG~~~~~~~l~----~i~~~~sf~~mk~~~~~~~~~~~~~~~~~~~~~f~RkG~vgdWk~~lt 279 (305)
T 2reo_A 204 EDIKKDPKREIEKILKFLEKDISEEILN----KIIYHTSFDVMKQNPMTNYTTLPTSIMDHSISPFMRKGMPGDWKNYFT 279 (305)
T ss_dssp HHHHHCHHHHHHHHHHHHTCCCCHHHHH----HHHHHTSHHHHHTCTTTSSCSSCTTTBCTTTCCSSCCCCTTGGGGTCC
T ss_pred HHHHHhHHHHHHHHHHHcCCCCCHHHHH----HHHHhCCHHHHHhhhhhcccccccccccccccceeeCCCCCCCcccCC
Confidence 6788888888888765 7777765432 222223211 1345577888888888
Q ss_pred Cccc
Q psy607 120 PEIA 123 (129)
Q Consensus 120 p~~a 123 (129)
||..
T Consensus 280 ~e~~ 283 (305)
T 2reo_A 280 VAQN 283 (305)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7754
No 87
>1x66_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.90 E-value=38 Score=23.33 Aligned_cols=34 Identities=24% Similarity=0.471 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhc--cc-cCChhhHHhhhhhhhhhhhhh
Q psy607 68 KEDLAEWLNNLYV--EL-HMNVANFMDRLDTGVTLCRGK 103 (129)
Q Consensus 68 kEDLaeWI~~Ll~--Ge-~i~~DnF~e~LkdGvlLCkLA 103 (129)
++++++||.=... ++ .++...|. =-||--||++-
T Consensus 29 ~~~V~~WL~W~~~ef~L~~v~~~~F~--~m~G~~LC~ls 65 (98)
T 1x66_A 29 QEHVRQWLEWAIKEYSLMEIDTSFFQ--NMDGKELCKMN 65 (98)
T ss_dssp TTHHHHHHHHHHHHTTCCSCCGGGGT--TCCHHHHHHCC
T ss_pred HHHHHHHHHHHHHhcCCCCCChhhCC--CCCHHHHHcCC
Confidence 3567777765542 32 23455551 14999999975
No 88
>1sxe_A Transcriptional regulator ERG; alpha helical, signaling protein; NMR {Homo sapiens} SCOP: a.60.1.1
Probab=20.75 E-value=46 Score=22.96 Aligned_cols=34 Identities=24% Similarity=0.421 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhc--ccc-CChhhHHhhhhhhhhhhhhh
Q psy607 68 KEDLAEWLNNLYV--ELH-MNVANFMDRLDTGVTLCRGK 103 (129)
Q Consensus 68 kEDLaeWI~~Ll~--Ge~-i~~DnF~e~LkdGvlLCkLA 103 (129)
++++++||.-... +.+ ++...|. =-||--||++.
T Consensus 32 ~~~V~~WL~W~~~ef~L~~i~~~~F~--~m~G~~LC~lt 68 (97)
T 1sxe_A 32 TDHVRQWLEWAVKEYGLPDVNILLFQ--NIDGKELCKMT 68 (97)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCGGGST--TCCHHHHTTCC
T ss_pred HHHHHHHHHHHHHhcCCCCCCHHhcC--CCCHHHHHhCC
Confidence 4677777765552 322 3444441 14999999975
No 89
>2kxo_A Cell division topological specificity factor; MINE, MIND-binding, to specificity, cell cycle; NMR {Neisseria gonorrhoeae}
Probab=20.37 E-value=53 Score=22.74 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=19.5
Q ss_pred CCcHHHhHHhHHHHHHHHHHHh
Q psy607 58 KSSEEYLYAMKEDLAEWLNNLY 79 (129)
Q Consensus 58 KssekyL~aMkEDLaeWI~~Ll 79 (129)
+.+-.|+..|++||.+.|++-.
T Consensus 34 ~~~pd~l~~lk~eIl~VIsKYv 55 (95)
T 2kxo_A 34 GQTPDYLPTLRKALMEVLSKYV 55 (95)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHHHhe
Confidence 4567899999999999999977
Done!