RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy607
(129 letters)
>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo
sapiens}
Length = 190
Score = 46.1 bits (109), Expect = 3e-07
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 41 MATPTATLVETRGLRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLC 100
+ + TA ++ R R + EYL ++E W+ E + L GV L
Sbjct: 3 LGSLTAEEMDER--RRQNVAYEYLCHLEE-AKRWMEACLGEDLPPTTELEEGLRNGVYLA 59
Query: 101 R 101
+
Sbjct: 60 K 60
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical,
calmodulin-binding, cell membrane, membrane,
phosphoprotein, protein binding; 2.50A {Homo sapiens}
Length = 193
Score = 45.0 bits (106), Expect = 9e-07
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 55 RPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCR 101
R + EYL ++E W+ E + L GV L +
Sbjct: 37 RRQNVAYEYLCHLEEAK-RWMEACLGEDLPPTTELEEGLRNGVYLAK 82
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle,
cytokine; 2.22A {Schizosaccharomyces pombe} SCOP:
a.40.1.1
Length = 203
Score = 41.5 bits (97), Expect = 1e-05
Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 1/61 (1%)
Query: 41 MATPTATLVETRGLRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLC 100
+ T + R + +YL + E +W+ + F L GV L
Sbjct: 31 VGTKGSNTRLAAKQRETLQAYDYLCRVDE-AKKWIEECLGTDLGPTSTFEQSLRNGVVLA 89
Query: 101 R 101
Sbjct: 90 L 90
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle,
protein binding; 2.21A {Schizosaccharomyces pombe} SCOP:
a.40.1.1
Length = 159
Score = 39.1 bits (91), Expect = 9e-05
Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 1/58 (1%)
Query: 55 RPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIK 112
R + +YL + E +W+ + F L GV L F +
Sbjct: 1 RETLQAYDYLCRVDE-AKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLI 57
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 1e-04
Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 13/73 (17%)
Query: 8 IF---GNTLKYSWRDFLIQSYEIPYPNWHQLMNMAQMATPTATLVETRGLRPFKSSEEYL 64
IF GNT Y + + L Y+ + L+ + TL E L E +
Sbjct: 159 IFGGQGNTDDY-FEE-LRDLYQTYHVLVGDLIKFS-----AETLSE---LIRTTLDAEKV 208
Query: 65 YAMKEDLAEWLNN 77
+ ++ EWL N
Sbjct: 209 FTQGLNILEWLEN 221
Score = 25.4 bits (55), Expect = 7.5
Identities = 11/69 (15%), Positives = 18/69 (26%), Gaps = 28/69 (40%)
Query: 45 TATLVETRGL-----RPFKSSEEYLYAM-------------KEDLAEWLNNL------YV 80
+V RG+ P Y M +E L + + V
Sbjct: 1782 LVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV 1841
Query: 81 ELHMNVANF 89
E + N+
Sbjct: 1842 E----IVNY 1846
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural
genomics, NPPSFA, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 136
Score = 37.5 bits (87), Expect = 2e-04
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 58 KSSEEYLYAMKEDLAEWLNNLYVELHMNV-ANFMDRLDTGVTLCRGKSTFFKSSIK 112
K +++Y + +++L EW+ + + NFMD L G+ LC + S+K
Sbjct: 9 KLAQKYDHQREQELREWIEGV---TGRRIGNNFMDGLKDGIILCEFINKLQPGSVK 61
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin
binding,; NMR {Gallus gallus} SCOP: a.40.1.1
Length = 108
Score = 30.1 bits (68), Expect = 0.095
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 66 AMKEDLAEWLNNLYVELHMNVA-NFMDRLDTGVTLCR 101
+ L W+ + NFMD L GV LC
Sbjct: 3 QTERQLRVWIEGA---TGRRIGDNFMDGLKDGVILCE 36
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding domain,
nuclear; zinc finger; 2.00A {Homo sapiens}
Length = 78
Score = 26.1 bits (58), Expect = 1.4
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 96 GVTLCRGKSTFFKSSIKEQRRSYCPE 121
G + C G FF+ S+++ C
Sbjct: 16 GASSCDGCKGFFRRSVRKNHMYSCRF 41
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with
drug, transcription/DNA complex; HET: DNA; 2.40A {Homo
sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Length = 84
Score = 26.2 bits (58), Expect = 1.7
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 96 GVTLCRGKSTFFKSSIKEQRRSYCPE 121
GV C G FFK SI+ CP
Sbjct: 20 GVWSCEGCKAFFKRSIQGHNDYMCPA 45
>1un8_A Dihydroxyacetone kinase; transferase; HET: MYY; 2.5A {Citrobacter
freundii} SCOP: a.208.1.1 c.119.1.2 PDB: 1un9_A*
Length = 552
Score = 27.2 bits (61), Expect = 1.8
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 59 SSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLD-TG--VTLCR 101
S E + + +LA + ++ + A+ + LD G +T
Sbjct: 265 SVAE-MAIITRELASSPLHSRIDWLIGPASLVTALDMKGFSLTAIV 309
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery,
lever ARM, transcription, hormone; HET: DNA; 1.61A
{Rattus norvegicus} PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A*
3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A*
3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A
2gda_A 1rgd_A ...
Length = 90
Score = 25.8 bits (57), Expect = 2.5
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 96 GVTLCRGKSTFFKSSIKEQRRSYCPE 121
GV C FFK +++ Q C
Sbjct: 18 GVLTCGSCKVFFKRAVEGQHNYLCAG 43
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding,
HOST-virus interaction, metal-binding, nucleus,
receptor, transcription, transcription regulation,
zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo
sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Length = 419
Score = 26.6 bits (58), Expect = 2.7
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 96 GVTLCRGKSTFFKSSIKEQRRSYCPE 121
GV C G FF+ +I+ + +
Sbjct: 66 GVHACEGCKGFFRRTIRLKLIYDRCD 91
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 111
Score = 25.8 bits (57), Expect = 3.4
Identities = 10/37 (27%), Positives = 13/37 (35%)
Query: 21 LIQSYEIPYPNWHQLMNMAQMATPTATLVETRGLRPF 57
+I YEI Y + M T GL+P
Sbjct: 40 IILEYEIKYYEKDKEMQSYSTLKAVTTRATVSGLKPG 76
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor,
protein-DNA, transcription/DNA complex; HET: DNA; 1.70A
{Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Length = 86
Score = 25.0 bits (55), Expect = 3.9
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 96 GVTLCRGKSTFFKSSIKEQRRSYCPE 121
GV+ C G FF+ SI++ C
Sbjct: 20 GVSACEGCKGFFRRSIQKNMVYTCHR 45
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450
reductase, diflavin reductase, FAD, FMN-binding,
electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces
cerevisiae} PDB: 2bn4_A* 2bf4_A*
Length = 682
Score = 26.3 bits (58), Expect = 3.9
Identities = 7/29 (24%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 59 SSEEYLYAMKEDLAEWLNNLYVELHMNVA 87
+++++LY +++ E+ L M VA
Sbjct: 573 NTDDFLY--QDEWPEYAKKLDGSFEMVVA 599
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor,
protein-DNA, transcription/DNA complex; HET: DNA; 1.70A
{Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A
1r0o_A 2nll_A*
Length = 85
Score = 25.0 bits (55), Expect = 4.1
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 96 GVTLCRGKSTFFKSSIKEQRRSYCPE 121
GV C G FFK ++++ C +
Sbjct: 21 GVYSCEGCKGFFKRTVRKDLTYTCRD 46
>2han_A Protein ultraspiracle; transcription regulation, transcription
factor, DNA-binding, nuclear protein, nuclear receptor,
zinc finger; 1.95A {Drosophila melanogaster} SCOP:
g.39.1.2
Length = 93
Score = 25.0 bits (55), Expect = 4.2
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 96 GVTLCRGKSTFFKSSIKEQRRSYCPE 121
GV C G FFK ++++ C E
Sbjct: 26 GVYSCEGCKGFFKRTVRKDLTYACRE 51
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA
binding domain, HERR2, hormone nuclear receptor; NMR
{Homo sapiens} SCOP: g.39.1.2
Length = 98
Score = 25.1 bits (55), Expect = 5.0
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 96 GVTLCRGKSTFFKSSIKEQRRSYCPE 121
GV C FFK +I+ CP
Sbjct: 20 GVASCEACKAFFKRTIQGNIEYSCPA 45
>3iuk_A Uncharacterized protein; PF05960.1, DUF885, M32
carboxypeptidase-like fold, PSI, MCSG structural
genomics, protein structure initiative; 1.85A
{Arthrobacter aurescens}
Length = 562
Score = 25.7 bits (56), Expect = 5.7
Identities = 10/71 (14%), Positives = 24/71 (33%), Gaps = 5/71 (7%)
Query: 29 YPNWHQLMNMAQMATPTATLVETRGLRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVAN 88
+ + ++ +A+P + L P + E + E +A N+ + +A+
Sbjct: 98 HQSGWDAADLNNIASPAQDIRAIFDLMPTDTVEHW-----EHIAGRAANVPGAIEGYIAS 152
Query: 89 FMDRLDTGVTL 99
D
Sbjct: 153 LRAAKDDRKVA 163
>3op7_A Aminotransferase class I and II; PLP-dependent transferase,
structural genomics, joint center structural genomics,
JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB:
3p6k_A*
Length = 375
Score = 25.6 bits (57), Expect = 6.0
Identities = 5/32 (15%), Positives = 11/32 (34%)
Query: 27 IPYPNWHQLMNMAQMATPTATLVETRGLRPFK 58
YP + QL ++ + L + +
Sbjct: 110 SLYPTYQQLYDIPKSLGAEVDLWQIEEENGWL 141
>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2,
NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 108
Score = 24.7 bits (54), Expect = 7.1
Identities = 11/37 (29%), Positives = 13/37 (35%)
Query: 21 LIQSYEIPYPNWHQLMNMAQMATPTATLVETRGLRPF 57
+I YEI Y + MA GLRP
Sbjct: 37 IILDYEIRYYEKEHNEFNSSMARSQTNTARIDGLRPG 73
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear
protein, receptor, transcription regulation, zinc, EAR3,
erbal3 tfcoup1; NMR {Homo sapiens}
Length = 89
Score = 24.2 bits (53), Expect = 9.6
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 96 GVTLCRGKSTFFKSSIKEQRRSYCPE 121
G C G +FFK S++ C
Sbjct: 23 GQFTCEGCKSFFKRSVRRNLTYTCRA 48
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.133 0.410
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,010,340
Number of extensions: 101884
Number of successful extensions: 234
Number of sequences better than 10.0: 1
Number of HSP's gapped: 232
Number of HSP's successfully gapped: 33
Length of query: 129
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 46
Effective length of database: 4,384,350
Effective search space: 201680100
Effective search space used: 201680100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.7 bits)