RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy607
         (129 letters)



>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 144

 Score = 40.0 bits (93), Expect = 1e-05
 Identities = 11/47 (23%), Positives = 15/47 (31%), Gaps = 4/47 (8%)

Query: 59  SSEEYLYAMKEDLAEWLNNLYVE----LHMNVANFMDRLDTGVTLCR 101
           SS      ++E L EW+                 F   L  GV L +
Sbjct: 2   SSGSSGEELEERLVEWIVVQCGPDVGRPDRGRLGFQVWLKNGVILSK 48


>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2
           {Fission yeast (Schizosaccharomyces pombe) [TaxId:
           4896]}
          Length = 159

 Score = 39.2 bits (91), Expect = 3e-05
 Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 1/47 (2%)

Query: 55  RPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCR 101
           R    + +YL  + E   +W+           + F   L  GV L  
Sbjct: 1   RETLQAYDYLCRVDE-AKKWIEECLGTDLGPTSTFEQSLRNGVVLAL 46


>d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId:
           9031]}
          Length = 108

 Score = 31.8 bits (72), Expect = 0.007
 Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 4/56 (7%)

Query: 67  MKEDLAEWLNNLYVELHMNVA-NFMDRLDTGVTLCRGKSTFFKSSIKEQRRSYCPE 121
            +  L  W+          +  NFMD L  GV LC   +     S+++        
Sbjct: 4   TERQLRVWIEGA---TGRRIGDNFMDGLKDGVILCELINKLQPGSVQKVNDPVQNW 56


>d1un8a4 c.119.1.2 (A:1-335) Dihydroxyacetone kinase {Citrobacter
           freundii [TaxId: 546]}
          Length = 335

 Score = 26.8 bits (59), Expect = 0.74
 Identities = 7/46 (15%), Positives = 17/46 (36%), Gaps = 3/46 (6%)

Query: 59  SSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTG---VTLCR 101
            S   +  +  +LA    +  ++  +  A+ +  LD     +T   
Sbjct: 264 VSVAEMAIITRELASSPLHSRIDWLIGPASLVTALDMKGFSLTAIV 309


>d1ltqa1 c.108.1.9 (A:153-301) Polynucleotide kinase, phosphatase
           domain {Bacteriophage T4 [TaxId: 10665]}
          Length = 149

 Score = 24.7 bits (53), Expect = 3.6
 Identities = 9/74 (12%), Positives = 23/74 (31%), Gaps = 1/74 (1%)

Query: 27  IPYPNWHQLMNMAQMATPTATLVETRGLRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNV 86
           +  P   +L  M  +      +V  R     +   +Y    ++ + + +  + + +    
Sbjct: 36  VINPMVVELSKMYALMGYQIVVVSGRESGTKEDPTKYYRMTRKWVED-IAGVPLVMQCQR 94

Query: 87  ANFMDRLDTGVTLC 100
                R D  V   
Sbjct: 95  EQGDTRKDDVVKEE 108


>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 98

 Score = 24.0 bits (51), Expect = 4.6
 Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 5/60 (8%)

Query: 5  AHEIFGNTLKYSWR-----DFLIQSYEIPYPNWHQLMNMAQMATPTATLVETRGLRPFKS 59
                 ++   W+     + +I  YEI Y    + M          T     GL+P   
Sbjct: 12 QERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYSTLKAVTTRATVSGLKPGTR 71


>d1iwpg_ a.23.2.1 (G:) Diol dehydratase, gamma subunit {Klebsiella
           pneumoniae [TaxId: 573]}
          Length = 138

 Score = 23.9 bits (52), Expect = 5.7
 Identities = 9/18 (50%), Positives = 14/18 (77%)

Query: 54  LRPFKSSEEYLYAMKEDL 71
           LRPF+SS+  L A+ ++L
Sbjct: 91  LRPFRSSQAELLAIADEL 108


>d1eexg_ a.23.2.1 (G:) Diol dehydratase, gamma subunit {Klebsiella
           oxytoca [TaxId: 571]}
          Length = 137

 Score = 23.9 bits (52), Expect = 5.8
 Identities = 9/18 (50%), Positives = 15/18 (83%)

Query: 54  LRPFKSSEEYLYAMKEDL 71
           LRP++S++E L A+ +DL
Sbjct: 90  LRPYRSTKEELLAIADDL 107


>d1sxda_ a.60.1.1 (A:) GABP-alpha subunit {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 91

 Score = 22.8 bits (49), Expect = 9.6
 Identities = 6/34 (17%), Positives = 12/34 (35%)

Query: 68  KEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCR 101
            + +  W+  +  E  M   +      +G  LC 
Sbjct: 28  TDQVLHWVVWVMKEFSMTDIDLTTLNISGRELCS 61


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.133    0.410 

Gapped
Lambda     K      H
   0.267   0.0632    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 496,384
Number of extensions: 19998
Number of successful extensions: 81
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 16
Length of query: 129
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 53
Effective length of database: 1,364,116
Effective search space: 72298148
Effective search space used: 72298148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.5 bits)