BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6070
(1454 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FNE|A Chain A, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|B Chain B, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|C Chain C, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
Length = 117
Score = 84.0 bits (206), Expect = 6e-16, Method: Composition-based stats.
Identities = 42/94 (44%), Positives = 59/94 (62%), Gaps = 2/94 (2%)
Query: 1301 PTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLF 1360
P ++ E+GP LGFSIVGG SP G++ I+VKT+F G A+E G L GD+I+
Sbjct: 24 PQCKSITLERGP--DGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAV 81
Query: 1361 NNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTT 1394
N + L+G TH EA+ I K+TK + +VL + T
Sbjct: 82 NGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDET 115
>pdb|2BYG|A Chain A, 2nd Pdz Domain Of Discs Large Homologue 2
Length = 117
Score = 61.6 bits (148), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/94 (40%), Positives = 51/94 (54%), Gaps = 4/94 (4%)
Query: 1302 TLVRVSFEKGPGKKSLGFSIVGGVDSPK--GEMGIFVKTIFPHGQAAESGLLVEGDEILL 1359
T+V + KGP K LGFSI GGV + G+ I+V I G A + G L GD +L+
Sbjct: 24 TVVEIKLFKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLM 81
Query: 1360 FNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNT 1393
NN L+ TH EA+ I K T + + V +P T
Sbjct: 82 VNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPTT 115
>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand From
The Apc Protein
Length = 102
Score = 58.2 bits (139), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 1316 SLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAIT 1375
SLG S+ GGV++ GI+VK I P G A G + +GD +L N L+G TH +A+
Sbjct: 24 SLGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVE 83
Query: 1376 IFKKTKQGLVELVLQ 1390
+ T Q +V L+L+
Sbjct: 84 TLRNTGQ-VVHLLLE 97
>pdb|1GM1|A Chain A, Second Pdz Domain (Pdz2) Of Ptp-Bl
Length = 94
Score = 57.8 bits (138), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 1316 SLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAIT 1375
SLG S+ GGV++ GI+VK I P G A G + +GD +L N L+G TH +A+
Sbjct: 16 SLGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVE 75
Query: 1376 IFKKTKQGLVELVLQ 1390
+ T Q +V L+L+
Sbjct: 76 TLRNTGQ-VVHLLLE 89
>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human Phosphatase
Hptp1e
pdb|3LNX|A Chain A, Second Pdz Domain From Human Ptp1e
pdb|3LNX|B Chain B, Second Pdz Domain From Human Ptp1e
pdb|3LNX|C Chain C, Second Pdz Domain From Human Ptp1e
pdb|3LNX|D Chain D, Second Pdz Domain From Human Ptp1e
pdb|3LNX|E Chain E, Second Pdz Domain From Human Ptp1e
pdb|3LNX|F Chain F, Second Pdz Domain From Human Ptp1e
pdb|3LNY|A Chain A, Second Pdz Domain From Human Ptp1e In Complex With Ra-Gef2
Peptide
Length = 96
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 1316 SLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAIT 1375
SLG S+ GGV++ GI+VK + P G A G + +GD +L N L+G TH +A+
Sbjct: 17 SLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVE 76
Query: 1376 IFKKTKQGLVELVLQ 1390
+ T Q +V L+L+
Sbjct: 77 TLRNTGQ-VVHLLLE 90
>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human Phosphatase
Hptp1e Complexed With A Peptide
Length = 96
Score = 56.6 bits (135), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 1309 EKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGR 1368
E SLG S+ GGV++ GI+VK + P G A G + +GD +L N L+G
Sbjct: 10 ELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGA 69
Query: 1369 THAEAITIFKKTKQGLVELVLQ 1390
TH +A+ + T Q +V L+L+
Sbjct: 70 THKQAVETLRNTGQ-VVHLLLE 90
>pdb|2IWO|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWO|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWP|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWP|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 120
Score = 56.2 bits (134), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 1303 LVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNN 1362
L V +KGP SLG SI GGV SP G++ IF+ + P G AA++ L GD I+
Sbjct: 25 LRTVEMKKGP-TDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICG 83
Query: 1363 EPLQGRTHAEAITIFKKTKQGLVEL 1387
+G TH +A+ + K G +E+
Sbjct: 84 TSTEGMTHTQAVNLLKNA-SGSIEM 107
>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway Of
A Pdz Domain
pdb|4AMH|B Chain B, Influence Of Circular Permutation On The Folding Pathway Of
A Pdz Domain
Length = 106
Score = 55.8 bits (133), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/85 (40%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 1313 GKKSLGFSIVGGVDSPK--GEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTH 1370
G K LGFSI GGV + G+ I+V I G A + G L GD++L NN L+ TH
Sbjct: 11 GSKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTH 70
Query: 1371 AEAITIFKKTKQGLVELVLQPNTTE 1395
EA+T K T + V +P + E
Sbjct: 71 EEAVTALKNTSDFVYLKVAKPGSGE 95
>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|B Chain B, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|C Chain C, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|D Chain D, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|E Chain E, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
Length = 105
Score = 54.7 bits (130), Expect = 4e-07, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 1303 LVRVSFEKGPGKKSLGFSIVGGVDSPK--GEMGIFVKTIFPHGQAAESGLLVEGDEILLF 1360
++ + KGP K LGFSI GGV + G+ I+V I G A + G L GD++L
Sbjct: 12 IMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 69
Query: 1361 NNEPLQGRTHAEAITIFKKTKQGLVELVLQPNT 1393
NN L+ TH EA+T K T + V +P +
Sbjct: 70 NNVCLEEVTHEEAVTALKNTSDFVYLKVAKPTS 102
>pdb|2OPG|A Chain A, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
pdb|2OPG|B Chain B, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
Length = 98
Score = 53.9 bits (128), Expect = 6e-07, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Query: 1299 CEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEIL 1358
CE T+ E G+ LG SIVGG D+ G I + ++ G A + G L GD+IL
Sbjct: 4 CETTI-----EISKGRTGLGLSIVGGSDTLLG--AIIIHEVYEEGAACKDGRLWAGDQIL 56
Query: 1359 LFNNEPLQGRTHAEAITIFKKTKQ 1382
N L+ TH EAI + ++T Q
Sbjct: 57 EVNGIDLRKATHDEAINVLRQTPQ 80
>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant
Protein Domain
Length = 99
Score = 53.9 bits (128), Expect = 7e-07, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 1303 LVRVSFEKGPGKKSLGFSIVGGVDSPK--GEMGIFVKTIFPHGQAAESGLLVEGDEILLF 1360
++ + KGP K LGFSI GGV + G+ I+V I G A + G L GD++L
Sbjct: 9 IMEIKLIKGP--KGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 66
Query: 1361 NNEPLQGRTHAEAITIFKKTKQGLVELVLQPNT 1393
NN L+ TH EA+T K T + V +P +
Sbjct: 67 NNVALEEVTHEEAVTALKNTSDFVYLKVAKPTS 99
>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human Inad-
Like Protein
Length = 116
Score = 53.5 bits (127), Expect = 7e-07, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 1309 EKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGR 1368
E G+ LG SIVGG D+P I + ++ G AA G L GD+IL N L+
Sbjct: 22 EISKGRSGLGLSIVGGKDTPLN--AIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNS 79
Query: 1369 THAEAITIFKKTKQGLVELVLQPNTTEADSKEG 1401
+H EAIT ++T Q + +V + D + G
Sbjct: 80 SHEEAITALRQTPQKVRLVVYRDEAHYRDEESG 112
>pdb|2O2T|A Chain A, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
pdb|2O2T|B Chain B, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
Length = 117
Score = 53.1 bits (126), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/79 (43%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 1312 PGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPL-QGRTH 1370
P LGFS+VG +GE+GIFV+ I A G L E D+IL N + L Q TH
Sbjct: 29 PPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITH 88
Query: 1371 AEAITIFKKTKQGLVELVL 1389
+AI+I +K K V+LV+
Sbjct: 89 QQAISILQKAKD-TVQLVI 106
>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18
Papillomavirus E6 Peptide
Length = 97
Score = 53.1 bits (126), Expect = 1e-06, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 1304 VRVSFEKGPGKKSLGFSIVGGVDSPK--GEMGIFVKTIFPHGQAAESGLLVEGDEILLFN 1361
+ + KGP K LGFSI GGV + G+ I+V I G A + G L GD++L N
Sbjct: 1 MEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVN 58
Query: 1362 NEPLQGRTHAEAITIFKKTKQGLVELVLQP 1391
N L+ TH EA+T K T + V +P
Sbjct: 59 NVCLEEVTHEEAVTALKNTSDFVYLKVAKP 88
>pdb|4G69|A Chain A, Structure Of The Human Discs Large 1 Pdz2 - Adenomatous
Polyposis Coli Cytoskeletal Polarity Complex
Length = 100
Score = 52.8 bits (125), Expect = 1e-06, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 1303 LVRVSFEKGPGKKSLGFSIVGGVDSPK--GEMGIFVKTIFPHGQAAESGLLVEGDEILLF 1360
++ + KGP K LGFSI GGV + G+ I+V I G A + G L GD++L
Sbjct: 10 IMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 67
Query: 1361 NNEPLQGRTHAEAITIFKKTKQGLVELVLQPNT 1393
NN L+ TH EA+T K T + V +P +
Sbjct: 68 NNVCLEEVTHEEAVTALKNTSDFVYLKVAKPTS 100
>pdb|2AWW|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g With
C-Terminal Glur-A Peptide
pdb|2AWW|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g With
C-Terminal Glur-A Peptide
Length = 105
Score = 52.8 bits (125), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 1303 LVRVSFEKGPGKKSLGFSIVGGVDSPK--GEMGIFVKTIFPHGQAAESGLLVEGDEILLF 1360
++ + KGP K LGFSI GGV + G+ I+V +I G A + G L GD++L
Sbjct: 4 IMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTSIVEGGAAHKDGKLQIGDKLLAV 61
Query: 1361 NNEPLQGRTHAEAITIFKKTKQGLVELVLQPNT 1393
N+ L+ TH EA+T K T + V +P +
Sbjct: 62 NSVGLEEVTHEEAVTALKNTSDFVYLKVAKPTS 94
>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
pdb|2AWX|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
Length = 105
Score = 52.8 bits (125), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 1303 LVRVSFEKGPGKKSLGFSIVGGVDSPK--GEMGIFVKTIFPHGQAAESGLLVEGDEILLF 1360
++ + KGP K LGFSI GGV + G+ I+V I G A + G L GD++L
Sbjct: 4 IMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 61
Query: 1361 NNEPLQGRTHAEAITIFKKTKQGLVELVLQPNT 1393
N+ L+ TH EA+T K T + V +P +
Sbjct: 62 NSVSLEEVTHEEAVTALKNTSDFVYLKVAKPTS 94
>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human Dlg3
Length = 94
Score = 52.8 bits (125), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 1302 TLVRVSFEKGPGKKSLGFSIVGGVDSPK--GEMGIFVKTIFPHGQAAESGLLVEGDEILL 1359
T++ V+ KGP K LGFSI GG+ + G+ I++ I G A + G L GD +L
Sbjct: 3 TIMEVNLLKGP--KGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLA 60
Query: 1360 FNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNT 1393
NN LQ H EA+ K T + V +P +
Sbjct: 61 VNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPGS 94
>pdb|2AWU|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
pdb|2AWU|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
Length = 105
Score = 52.8 bits (125), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 1303 LVRVSFEKGPGKKSLGFSIVGGVDSPK--GEMGIFVKTIFPHGQAAESGLLVEGDEILLF 1360
++ + KGP K LGFSI GGV + G+ I+V I G A + G L GD++L
Sbjct: 4 IMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 61
Query: 1361 NNEPLQGRTHAEAITIFKKTKQGLVELVLQPNT 1393
N+ L+ TH EA+T K T + V +P +
Sbjct: 62 NSVGLEEVTHEEAVTALKNTSDFVYLKVAKPTS 94
>pdb|2G2L|A Chain A, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
pdb|2G2L|B Chain B, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
Length = 105
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 1303 LVRVSFEKGPGKKSLGFSIVGGVDSPK--GEMGIFVKTIFPHGQAAESGLLVEGDEILLF 1360
++ + KGP K LGFSI GGV + G+ I+V I G A + G L GD++L
Sbjct: 4 IMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 61
Query: 1361 NNEPLQGRTHAEAITIFKKTKQGLVELVLQPNT 1393
N+ L+ TH EA+T K T + V +P +
Sbjct: 62 NSVCLEEVTHEEAVTALKNTSDFVYLKVAKPTS 94
>pdb|1OZI|A Chain A, The Alternatively Spliced Pdz2 Domain Of Ptp-Bl
Length = 99
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 1316 SLGFSIV-----GGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTH 1370
SLG S+ GGV++ GI+VK I P G A G + +GD +L N L+G TH
Sbjct: 16 SLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATH 75
Query: 1371 AEAITIFKKTKQGLVELVLQ 1390
+A+ + T Q +V L+L+
Sbjct: 76 KQAVETLRNTGQ-VVHLLLE 94
>pdb|1Q7X|A Chain A, Solution Structure Of The Alternatively Spliced Pdz2 Domain
(Pdz2b) Of Ptp-Bas (Hptp1e)
Length = 108
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 1316 SLGFSIV-----GGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTH 1370
SLG S+ GGV++ GI+VK + P G A G + +GD +L N L+G TH
Sbjct: 21 SLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATH 80
Query: 1371 AEAITIFKKTKQGLVELVLQ 1390
+A+ + T Q +V L+L+
Sbjct: 81 KQAVETLRNTGQ-VVHLLLE 99
>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human Synaptojanin
2 Binding Protein
Length = 120
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 1306 VSFEKGPGKKSLGFSIVGGVDSP--KGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNE 1363
++ +GP LGF+IVGG D + GI+V I +G AA G L EGD+IL N +
Sbjct: 21 INLTRGP--SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQ 78
Query: 1364 PLQGRTHAEAITIFK 1378
L+ H +A+ +F+
Sbjct: 79 DLKNLLHQDAVDLFR 93
>pdb|2OGP|A Chain A, Solution Structure Of The Second Pdz Domain Of Par-3
Length = 97
Score = 50.8 bits (120), Expect = 6e-06, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 1305 RVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEP 1364
R++ + G + LGFSI + G I+VK I P G A + G L GD ++ N
Sbjct: 6 RLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVD 65
Query: 1365 LQGRTHAEAITIFKKTK-QGLVELVL 1389
L G++ E +++ + TK +G V L++
Sbjct: 66 LAGKSQEEVVSLLRSTKMEGTVSLLV 91
>pdb|1X6D|A Chain A, Solution Structures Of The Pdz Domain Of Human Interleukin-
16
Length = 119
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 5/74 (6%)
Query: 1309 EKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGR 1368
E+G G LGFS+ GG D I V +FP+G A++ G + +G+E+L N + L+G
Sbjct: 24 EEGAG---LGFSLAGGADLENKV--ITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGT 78
Query: 1369 THAEAITIFKKTKQ 1382
TH +A+ I ++ ++
Sbjct: 79 THHDALAILRQARE 92
>pdb|2I0L|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6.
pdb|2I0L|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 84
Score = 50.4 bits (119), Expect = 7e-06, Method: Composition-based stats.
Identities = 32/73 (43%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 1310 KGPGKKSLGFSIVGGVDSPK--GEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQG 1367
KGP K LGFSI GGV + G+ I+V I G A + G L GD++L N+ L+
Sbjct: 6 KGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEE 63
Query: 1368 RTHAEAITIFKKT 1380
TH EA+T K T
Sbjct: 64 VTHEEAVTALKNT 76
>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
pdb|2JIK|B Chain B, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 101
Score = 50.4 bits (119), Expect = 8e-06, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 1306 VSFEKGPGKKSLGFSIVGGVDSP--KGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNE 1363
++ +GP LGF+IVGG D + GI+V I +G AA G L EGD+IL N +
Sbjct: 11 INLTRGP--SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQ 68
Query: 1364 PLQGRTHAEAITIFK 1378
L+ H +A+ +F+
Sbjct: 69 DLKNLLHQDAVDLFR 83
>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 102
Score = 50.1 bits (118), Expect = 8e-06, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 1306 VSFEKGPGKKSLGFSIVGGVDSP--KGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNE 1363
++ +GP LGF+IVGG D + GI+V I +G AA G L EGD+IL N +
Sbjct: 13 INLTRGP--SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQ 70
Query: 1364 PLQGRTHAEAITIFK 1378
L+ H +A+ +F+
Sbjct: 71 DLKNLLHQDAVDLFR 85
>pdb|2KOJ|A Chain A, Solution Structure Of Mouse Par-3 Pdz2 (Residues 450-558)
Length = 111
Score = 50.1 bits (118), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 1305 RVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEP 1364
R++ + G + LGFSI + G I+VK I P G A + G L GD ++ N
Sbjct: 12 RLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVD 71
Query: 1365 LQGRTHAEAITIFKKTK-QGLVELVL 1389
L G++ E +++ + TK +G V L++
Sbjct: 72 LAGKSQEEVVSLLRSTKMEGTVSLLV 97
>pdb|2DAZ|A Chain A, Solution Structure Of The 7th Pdz Domain Of Inad-Like
Protein
Length = 124
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 1314 KKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEA 1373
K LG S+ G D + M IFV I P G AA G + GDE+L NN+ L GR+H A
Sbjct: 35 KNGLGLSLAGNKDRSR--MSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNA 92
Query: 1374 ITIFKKTKQGLVELVLQPN 1392
I KT V+LV N
Sbjct: 93 SAII-KTAPSKVKLVFIRN 110
>pdb|2KOM|A Chain A, Solution Structure Of Humar Par-3b Pdz2 (Residues 451-549)
Length = 121
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 1305 RVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEP 1364
R++ + G + LGFSI + G I+VK I P G A + G L GD ++ N
Sbjct: 31 RLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVD 90
Query: 1365 LQGRTHAEAITIFKKTK-QGLVELVL 1389
L G++ E +++ + TK +G V L++
Sbjct: 91 LVGKSQEEVVSLLRSTKMEGTVSLLV 116
>pdb|1UJD|A Chain A, Solution Structure Of Rsgi Ruh-003, A Pdz Domain Of
Hypothetical Kiaa0559 Protein From Human Cdna
Length = 117
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 1317 LGFSIVGGVDSP--KGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAI 1374
LG IVGG + P GE+G ++ I P G A ++G L+EG ++L +N PL +T+ E
Sbjct: 32 LGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQ 91
Query: 1375 TIFKK 1379
+I +
Sbjct: 92 SIISQ 96
>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin
Peptide
Length = 189
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 1313 GKKSLGFSIVGGVDSPK--GEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTH 1370
G LGFSI GG D+P + IF+ I P G AA+ G L D IL N ++ TH
Sbjct: 11 GNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTH 70
Query: 1371 AEAITIFKK 1379
+ A+ K+
Sbjct: 71 SAAVEALKE 79
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 1303 LVRVSFEKGPGKKSLGFSIVGGVDSPK--GEMGIFVKTIFPHGQAAESGLLVEGDEILLF 1360
++ + KGP K LGFSI GGV + G+ I+V I G A + G L GD+IL
Sbjct: 98 VMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAV 155
Query: 1361 NNEPLQGRTHAEAITIFKKTKQGLVELVLQPN 1392
N+ L+ H +A+ K T + V +P+
Sbjct: 156 NSVGLEDVMHEDAVAALKNTYDVVYLKVAKPS 187
>pdb|1IU0|A Chain A, The First Pdz Domain Of Psd-95
pdb|1IU2|A Chain A, The First Pdz Domain Of Psd-95
Length = 91
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 1313 GKKSLGFSIVGGVDSPK--GEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTH 1370
G LGFSI GG D+P + IF+ I P G AA+ G L D IL N ++ TH
Sbjct: 11 GNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTH 70
Query: 1371 AEAITIFKK 1379
+ A+ K+
Sbjct: 71 SAAVEALKE 79
>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|B Chain B, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|C Chain C, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|D Chain D, Crystal Structure Of Human Psd-95 Pdz1-2
Length = 199
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 1313 GKKSLGFSIVGGVDSPK--GEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTH 1370
G LGFSI GG D+P + IF+ I P G AA+ G L D IL N ++ TH
Sbjct: 21 GNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTH 80
Query: 1371 AEAITIFKK 1379
+ A+ K+
Sbjct: 81 SAAVEALKE 89
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 1303 LVRVSFEKGPGKKSLGFSIVGGVDSPK--GEMGIFVKTIFPHGQAAESGLLVEGDEILLF 1360
++ + KGP K LGFSI GGV + G+ I+V I G A + G L GD+IL
Sbjct: 108 VMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAV 165
Query: 1361 NNEPLQGRTHAEAITIFKKTKQGLVELVLQPN 1392
N+ L+ H +A+ K T + V +P+
Sbjct: 166 NSVGLEDVMHEDAVAALKNTYDVVYLKVAKPS 197
>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
pdb|3GSL|B Chain B, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
Length = 196
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 1313 GKKSLGFSIVGGVDSPK--GEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTH 1370
G LGFSI GG D+P + IF+ I P G AA+ G L D IL N ++ TH
Sbjct: 14 GNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTH 73
Query: 1371 AEAITIFKK 1379
+ A+ K+
Sbjct: 74 SAAVEALKE 82
Score = 47.8 bits (112), Expect = 4e-05, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 1303 LVRVSFEKGPGKKSLGFSIVGGVDSPK--GEMGIFVKTIFPHGQAAESGLLVEGDEILLF 1360
++ + KGP K LGFSI GGV + G+ I+V I G A + G L GD+IL
Sbjct: 101 VMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAV 158
Query: 1361 NNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTTE 1395
N+ L+ H +A+ K T + V +P+ E
Sbjct: 159 NSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSNAE 193
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 1303 LVRVSFEKGPGKKSLGFSIVGGVDSPK--GEMGIFVKTIFPHGQAAESGLLVEGDEILLF 1360
++ + KGP K LGFSI GGV + G+ I+V I G A + G L GD+IL
Sbjct: 155 VMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAV 212
Query: 1361 NNEPLQGRTHAEAITIFKKTKQGLVELVLQPN 1392
N+ L+ H +A+ K T + V +P+
Sbjct: 213 NSVGLEDVMHEDAVAALKNTYDVVYLKVAKPS 244
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 1313 GKKSLGFSIVGGVDSPK--GEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTH 1370
G LGFSI GG D+P + IF+ I P G AA+ G L D IL N ++ TH
Sbjct: 68 GNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTH 127
Query: 1371 AEAITIFKKT 1380
+ A+ K+
Sbjct: 128 SAAVEALKEA 137
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 1313 GKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAE 1372
G LGF+IVGG D GE GIF+ I G A SG L +GD+IL N L+ +H +
Sbjct: 316 GSTGLGFNIVGGED---GE-GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQ 371
Query: 1373 AITIFKKTKQ 1382
A K Q
Sbjct: 372 AAIALKNAGQ 381
>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs Large
Homologue 2, Dlg2
pdb|2HE2|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Human Discs Large
Homologue 2, Dlg2
Length = 102
Score = 48.5 bits (114), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 1313 GKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAE 1372
G LGF+IVGG D GE GIFV I G A SG L GD+IL N L+G +H +
Sbjct: 12 GSTGLGFNIVGGED---GE-GIFVSFILAGGPADLSGELQRGDQILSVNGIDLRGASHEQ 67
Query: 1373 AITIFKKTKQ 1382
A K Q
Sbjct: 68 AAAALKGAGQ 77
>pdb|2QG1|A Chain A, Crystal Structure Of The 11th Pdz Domain Of Mpdz (Mupp1)
Length = 92
Score = 48.5 bits (114), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 1306 VSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPL 1365
+ +K PGK LG SIVG + + G+FV I G A G L++GD+IL+ N E +
Sbjct: 8 IGLQKKPGK-GLGLSIVG----KRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDV 62
Query: 1366 QGRTHAEAITIFKKTKQGLVEL 1387
+ T EA+ K G V L
Sbjct: 63 RNATQ-EAVAALLKCSLGTVTL 83
>pdb|2WL7|A Chain A, Crystal Structure Of The Psd93 Pdz1 Domain
Length = 102
Score = 48.1 bits (113), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 1313 GKKSLGFSIVGGVDSPK--GEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTH 1370
G LGFSI GG D+P + GIF+ I P G AAE G L D IL N + +H
Sbjct: 18 GNSGLGFSIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCILRVNEVDVSEVSH 77
Query: 1371 AEAITIFKK 1379
++A+ K+
Sbjct: 78 SKAVEALKE 86
>pdb|1RGR|A Chain A, Cyclic Peptides Targeting Pdz Domains Of Psd-95: Structural
Basis For Enhanced Affinity And Enzymatic Stability
Length = 99
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 1313 GKKSLGFSIVGGVDSPK--GEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTH 1370
G LGFSI GG D+P + IF+ I P G AA+ G L D IL N ++ TH
Sbjct: 10 GNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTH 69
Query: 1371 AEAITIFKK 1379
+ A+ K+
Sbjct: 70 SAAVEALKE 78
>pdb|1KEF|A Chain A, Pdz1 Of Sap90
Length = 93
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 1313 GKKSLGFSIVGGVDSPK--GEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTH 1370
G LGFSI GG D+P + IF+ I P G AA+ G L D IL N ++ TH
Sbjct: 10 GNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTH 69
Query: 1371 AEAITIFKK 1379
+ A+ K+
Sbjct: 70 SAAVEALKE 78
>pdb|1QLC|A Chain A, Solution Structure Of The Second Pdz Domain Of Postsynaptic
Density-95
Length = 95
Score = 47.4 bits (111), Expect = 6e-05, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 1303 LVRVSFEKGPGKKSLGFSIVGGVDSPK--GEMGIFVKTIFPHGQAAESGLLVEGDEILLF 1360
++ + KGP K LGFSI GGV + G+ I+V I G A + G L GD+IL
Sbjct: 4 VMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAV 61
Query: 1361 NNEPLQGRTHAEAITIFKKTKQGLVELVLQPN 1392
N+ L+ H +A+ K T + V +P+
Sbjct: 62 NSVGLEDVMHEDAVAALKNTYDVVYLKVAKPS 93
>pdb|1UEZ|A Chain A, Solution Structure Of The First Pdz Domain Of Human Kiaa1526
Protein
Length = 101
Score = 47.4 bits (111), Expect = 6e-05, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 1306 VSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPL 1365
VS + + LGFSI GG S G +GI+V + P A + GL V GD+IL N++ L
Sbjct: 12 VSLRRAKAHEGLGFSIRGG--SEHG-VGIYVSLVEPGSLAEKEGLRV-GDQILRVNDKSL 67
Query: 1366 QGRTHAEAITIFKKTKQ 1382
THAEA+ K +K+
Sbjct: 68 ARVTHAEAVKALKGSKK 84
>pdb|1UJU|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 111
Score = 47.0 bits (110), Expect = 8e-05, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 1303 LVRVSFEKGPGKKSLGFSIVGGVDSPKG------EMGIFVKTIFPHGQAAESGLLVEGDE 1356
L + +K PG++ LG SI GG G + GIF+ + P G A G L G
Sbjct: 10 LRELCIQKAPGER-LGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLR 68
Query: 1357 ILLFNNEPLQGRTHAEAITIFKKTKQGLVELV 1388
+L N + L G TH EA+ + + L LV
Sbjct: 69 LLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLV 100
>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
pdb|3JXT|B Chain B, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
Length = 104
Score = 46.6 bits (109), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 1313 GKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAE 1372
G LGF+IVGG D GE GIFV I G A SG L GD IL N L+ TH +
Sbjct: 21 GSTGLGFNIVGGED---GE-GIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQ 76
Query: 1373 AITIFKKTKQGL 1384
A K+ Q +
Sbjct: 77 AAAALKRAGQSV 88
>pdb|1UHP|A Chain A, Solution Structure Of Rsgi Ruh-005, A Pdz Domain In Human
Cdna, Kiaa1095
Length = 107
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 1316 SLGFSIVGG---VDSPKGEM--GIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTH 1370
SLGF+I+GG VD+ G GIFV I G AA+ G L D I+ N L TH
Sbjct: 20 SLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATH 79
Query: 1371 AEAITIFKKTKQGLVELVLQ 1390
+A+ FK K+ +V VL+
Sbjct: 80 DQAVEAFKTAKEPIVVQVLR 99
>pdb|1I16|A Chain A, Structure Of Interleukin 16: Implications For Function, Nmr,
20 Structures
Length = 130
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 1298 TCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEI 1357
T E T+ V+ EK LGFS+ GG S G+ + + IF + +S + GDEI
Sbjct: 25 TAEATVCTVTLEKMSA--GLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEI 82
Query: 1358 LLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTTEA 1396
L +QG T EA I K G V +V++ + ++
Sbjct: 83 LQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSLQS 121
>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse-
Associated Protein 102
Length = 113
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 1313 GKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAE 1372
G LGF+IVGG D GE GIFV I G A SG L GD IL N L+ TH +
Sbjct: 24 GSTGLGFNIVGGED---GE-GIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQ 79
Query: 1373 AITIFKKTKQGL 1384
A K+ Q +
Sbjct: 80 AAAALKRAGQSV 91
>pdb|1WI2|A Chain A, Solution Structure Of The Pdz Domain From Riken Cdna
2700099c19
Length = 104
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 1306 VSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPL 1365
V+ +K PG + LGF+I GG S ++GIF+ + P A +GL EGD++L N+
Sbjct: 19 VTLKKPPGAQ-LGFNIRGGKAS---QLGIFISKVIPDSDAHRAGLQ-EGDQVLAVNDVDF 73
Query: 1366 QGRTHAEAITIFKKTKQ 1382
Q H++A+ I K ++
Sbjct: 74 QDIEHSKAVEILKTARE 90
>pdb|1ZOK|A Chain A, Pdz1 Domain Of Synapse Associated Protein 97
Length = 93
Score = 45.4 bits (106), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 1313 GKKSLGFSIVGGVDSPK--GEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTH 1370
G LGFSI GG D+P + IF+ I G AA+ G L D IL N ++ TH
Sbjct: 10 GNSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTH 69
Query: 1371 AEAITIFKK 1379
++A+ K+
Sbjct: 70 SKAVEALKE 78
>pdb|3RL7|B Chain B, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|A Chain A, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|C Chain C, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|D Chain D, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|E Chain E, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|F Chain F, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
Length = 107
Score = 44.7 bits (104), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 1313 GKKSLGFSIVGGVDSPK--GEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTH 1370
G LGFSI GG D+P + IF+ I G AA+ G L D IL N ++ TH
Sbjct: 20 GNSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEVDVRDVTH 79
Query: 1371 AEAITIFKK 1379
++A+ K+
Sbjct: 80 SKAVEALKE 88
>pdb|1T2M|A Chain A, Solution Structure Of The Pdz Domain Of Af-6
Length = 101
Score = 44.3 bits (103), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 12/96 (12%)
Query: 1300 EPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILL 1359
EP ++ V+ +K G +G SIV + + ++GI+VK++ G A G L GD++L
Sbjct: 3 EPEIITVTLKKQNG---MGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLS 59
Query: 1360 FNNEPLQGRTHAEAITIFKKT---------KQGLVE 1386
+ L G + A + +T KQG +E
Sbjct: 60 VDGRSLVGLSQERAAELMTRTSSVVTLEVAKQGALE 95
>pdb|1UEQ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 123
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 1316 SLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAIT 1375
GF+I+GG D P + + VK++ P G AA+ G + GD I+ N + G THA+ +
Sbjct: 31 GFGFTIIGG-DEP--DEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVK 87
Query: 1376 IFKKTKQGL-VELVL 1389
+F+ G V LVL
Sbjct: 88 LFQSVPIGQSVNLVL 102
>pdb|1UM1|A Chain A, Solution Structure Of Rsgi Ruh-007, Pdz Domain In Human Cdna
Length = 110
Score = 44.3 bits (103), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 1306 VSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPL 1365
V E+GP LG ++ G+ + G G++++T+ P AA G L GD IL N L
Sbjct: 12 VELERGP--SGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSL 69
Query: 1366 QGRTHAEAITIFKKTKQGLVELVLQPNTTEA 1396
G + A+ + + + + LV + + A
Sbjct: 70 LGLGYLRAVDLIRHGGKKMRFLVAKSDVETA 100
>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv Peptide
Ligand
pdb|1TP5|A Chain A, Crystal Structure Of Pdz3 Domain Of Psd-95 Protein Complexed
With A Peptide Ligand Kketwv
pdb|1TQ3|A Chain A, Higher Resolution Crystal Structure Of The Third Pdz Domain
Of Post Synaptic Psd-95 Protein
Length = 119
Score = 44.3 bits (103), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 1313 GKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAE 1372
G LGF+IVGG D GE GIF+ I G A SG L +GD+IL N L+ +H +
Sbjct: 23 GSTGLGFNIVGGED---GE-GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQ 78
Query: 1373 AITIFKKTKQ 1382
A K Q
Sbjct: 79 AAIALKNAGQ 88
>pdb|3AXA|A Chain A, Crystal Structure Of Afadin Pdz Domain In Complex With The
C-Terminal Peptide From Nectin-3
pdb|3AXA|B Chain B, Crystal Structure Of Afadin Pdz Domain In Complex With The
C-Terminal Peptide From Nectin-3
Length = 106
Score = 43.9 bits (102), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 1300 EPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILL 1359
EP ++ V+ +K G +G SIV + + ++GI+VK++ G A G L GD++L
Sbjct: 9 EPEIITVTLKKQNG---MGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLS 65
Query: 1360 FNNEPLQGRTHAEAITIFKKT 1380
+ L G + A + +T
Sbjct: 66 VDGRSLVGLSQERAAELMTRT 86
>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|B Chain B, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|C Chain C, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|D Chain D, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 104
Score = 43.9 bits (102), Expect = 7e-04, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 1313 GKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAE 1372
G LGF+IVGG GE GIF+ I G A SG L +GD+IL N L+ +H +
Sbjct: 20 GSTGLGFNIVGG---EXGE-GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQ 75
Query: 1373 AITIFKKTKQ 1382
A K Q
Sbjct: 76 AAIALKNAGQ 85
>pdb|2AIN|A Chain A, Solution Structure Of The Af-6 Pdz Domain Complexed With The
C-Terminal Peptide From The Bcr Protein
Length = 93
Score = 43.9 bits (102), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 1300 EPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILL 1359
EP ++ V+ +K G +G SIV + + ++GI+VK++ G A G L GD++L
Sbjct: 3 EPEIITVTLKKQNG---MGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLS 59
Query: 1360 FNNEPLQGRTHAEAITIFKKT 1380
+ L G + A + +T
Sbjct: 60 VDGRSLVGLSQERAAELMTRT 80
>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In
Complex With A C-Terminal Peptide Derived From Cript.
pdb|1BFE|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95
Length = 119
Score = 43.5 bits (101), Expect = 8e-04, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 1313 GKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAE 1372
G LGF+I+GG D GE GIF+ I G A SG L +GD+IL N L+ +H +
Sbjct: 23 GSTGLGFNIIGGED---GE-GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQ 78
Query: 1373 AITIFKKTKQ 1382
A K Q
Sbjct: 79 AAIALKNAGQ 88
>pdb|1XZ9|A Chain A, Structure Of Af-6 Pdz Domain
pdb|2EXG|A Chain A, Making Protein-protein Interactions Drugable: Discovery Of
Low-molecular-weight Ligands For The Af6 Pdz Domain
Length = 101
Score = 43.5 bits (101), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 1300 EPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILL 1359
EP ++ V+ +K G +G SIV + + ++GI+VK++ G A G L GD++L
Sbjct: 9 EPEIITVTLKKQNG---MGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLS 65
Query: 1360 FNNEPLQGRTHAEAITIFKKT 1380
+ L G + A + +T
Sbjct: 66 VDGRSLVGLSQERAAELMTRT 86
>pdb|2DB5|A Chain A, Solution Structure Of The First Pdz Domain Of Inad-Like
Protein
Length = 128
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 1312 PGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPL-QGRTH 1370
P LGFS+V G++ IFVK + P A L E D+IL N+ PL Q +H
Sbjct: 34 PSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISH 93
Query: 1371 AEAITIFKKTKQGLVELV 1388
+AI + ++T L +V
Sbjct: 94 QQAIALLQQTTGSLRLIV 111
>pdb|2I1N|A Chain A, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
pdb|2I1N|B Chain B, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
Length = 102
Score = 43.5 bits (101), Expect = 8e-04, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 1313 GKKSLGFSIVGGVDSPK--GEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTH 1370
G LGFSI GG+D+P + GIF+ I P G AA G L D +L N + H
Sbjct: 13 GNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVH 72
Query: 1371 AEAITIFKK 1379
+ A+ K+
Sbjct: 73 SRAVEALKE 81
>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7
Homolog B
Length = 93
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
Query: 1315 KSLGFSIVGGVD--SPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAE 1372
+ LGF+I+GG + SP I++ + P G A G L GD++L N ++G H +
Sbjct: 16 EGLGFNIMGGKEQNSP-----IYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEK 70
Query: 1373 AITIFKKTKQGLVELVLQ 1390
A+ + K QG V+LV++
Sbjct: 71 AVELL-KAAQGSVKLVVR 87
>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 98
Score = 43.5 bits (101), Expect = 0.001, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 1313 GKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAE 1372
G LGF+IVGG GE GIF+ I G A SG L +GD+IL N L+ +H +
Sbjct: 15 GSTGLGFNIVGG---EXGE-GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQ 70
Query: 1373 AITIFKKTKQ 1382
A K Q
Sbjct: 71 AAIALKNAGQ 80
>pdb|2K1Z|A Chain A, Solution Structure Of Par-3 Pdz3
pdb|2K20|A Chain A, Solution Structure Of Par-3 Pdz3 In Complex With Pten
Peptide
Length = 104
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 1313 GKKSLGFSIVGGVDSPK-GEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHA 1371
G LG S+ G ++GIFVK+I G A++ G L D+++ N E L G+ +
Sbjct: 16 GSAGLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQ 75
Query: 1372 EAITIFKKT------KQGLVELVL 1389
EA+ +++ K+G+++L++
Sbjct: 76 EAMETLRRSMSTEGNKRGMIQLIV 99
>pdb|1Z87|A Chain A, Solution Structure Of The Split Ph-Pdz Supramodule Of Alpha-
Syntrophin
Length = 263
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
Query: 1296 PQTCEPTLV---RVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLV 1352
PQ E L+ RV+ K LG SI GG ++ +M I + IF A ++ L
Sbjct: 68 PQLPEALLLQRRRVTVRKA-DAGGLGISIKGGREN---KMPILISKIFKGLAADQTEALF 123
Query: 1353 EGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQ 1390
GD IL N E L TH EA+ KKT + E+VL+
Sbjct: 124 VGDAILSVNGEDLSSATHDEAVQALKKTGK---EVVLE 158
>pdb|2KOH|A Chain A, Nmr Structure Of Mouse Par3-Pdz3 In Complex With Ve-Cadherin
C-Terminus
Length = 111
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 1313 GKKSLGFSIVGGVDSPK-GEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHA 1371
G LG S+ G ++GIFVK+I G A++ G L D+++ N E L G+ +
Sbjct: 19 GSAGLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQ 78
Query: 1372 EAITIFKKT------KQGLVELVL 1389
EA+ +++ K+G+++L++
Sbjct: 79 EAMETLRRSMSTEGNKRGMIQLIV 102
>pdb|1V6B|A Chain A, Solution Structure Of The Third Pdz Domain Of Mouse Harmonin
Length = 118
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 1316 SLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAIT 1375
SL ++ GGVDSP G+ + V ++ G A G +V+GDEI+ N + + T AEA
Sbjct: 29 SLDLALEGGVDSPVGK--VVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEA 86
Query: 1376 IFKK 1379
+K
Sbjct: 87 ALQK 90
>pdb|2PDZ|A Chain A, Solution Structure Of The Syntrophin Pdz Domain In Complex
With The Peptide Gvkeslv, Nmr, 15 Structures
Length = 86
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 1305 RVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEP 1364
RV+ K LG SI GG ++ +M I + IF A ++ L GD IL N E
Sbjct: 3 RVTVRKADAG-GLGISIKGGREN---KMPILISKIFKGLAADQTEALFVGDAILSVNGED 58
Query: 1365 LQGRTHAEAITIFKKTKQGLV 1385
L TH EA+ KKT + +V
Sbjct: 59 LSSATHDEAVQALKKTGKEVV 79
>pdb|1G9O|A Chain A, First Pdz Domain Of The Human Na+H+ EXCHANGER REGULATORY
Factor
Length = 91
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 1308 FEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQG 1367
EKGP GF + G KG++G +++ + P A ++GLL GD ++ N E ++
Sbjct: 9 LEKGP--NGYGFHLHG----EKGKLGQYIRLVEPGSPAEKAGLLA-GDRLVEVNGENVEK 61
Query: 1368 RTHAEAITIFKKTKQGLVELVLQPNTTE 1395
TH + ++ + + LV+ P T E
Sbjct: 62 ETHQQVVSRIRAALNAVRLLVVDPETDE 89
>pdb|3B76|A Chain A, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And Adenovirus
Receptor
pdb|3B76|B Chain B, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And Adenovirus
Receptor
Length = 118
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 1306 VSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPL 1365
V+ +K PG+ SLG ++ GG + ++ I+V ++ P G + G + GD +L + L
Sbjct: 28 VNIQKDPGE-SLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVEL 86
Query: 1366 QGRTHAEAITIFKKTKQGLVELVLQ 1390
+ +EA+ + K+T +V L+
Sbjct: 87 TEVSRSEAVALLKRTSSSIVLKALE 111
>pdb|1QAV|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 90
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 1305 RVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEP 1364
RV+ K LG SI GG ++ +M I + IF A ++ L GD IL N E
Sbjct: 7 RVTVRKADAG-GLGISIKGGREN---KMPILISKIFKGLAADQTEALFVGDAILSVNGED 62
Query: 1365 LQGRTHAEAITIFKKTKQGLV 1385
L TH EA+ KKT + +V
Sbjct: 63 LSSATHDEAVQALKKTGKEVV 83
>pdb|1WG6|A Chain A, Solution Structure Of Pdz Domain In Protein Xp_110852
Length = 127
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 1313 GKKSLGFSIVGGVDSPKG-EMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHA 1371
G LG S+ G G ++GIF+K+I G A + G L D+++ N E L G+++
Sbjct: 35 GSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNH 94
Query: 1372 EAITIFKKTK------QGLVELVL 1389
EA+ +++ +G+++LV+
Sbjct: 95 EAMETLRRSMSMEGNIRGMIQLVI 118
>pdb|1Z86|A Chain A, Solution Structure Of The Pdz Domain Of Alpha-Syntrophin
Length = 87
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 1305 RVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEP 1364
RV+ K LG SI GG ++ +M I + IF A ++ L GD IL N E
Sbjct: 3 RVTVRKADAG-GLGISIKGGREN---KMPILISKIFKGLAADQTEALFVGDAILSVNGED 58
Query: 1365 LQGRTHAEAITIFKKTKQGLV 1385
L TH EA+ KKT + +V
Sbjct: 59 LSSATHDEAVQALKKTGKEVV 79
>pdb|2CSJ|A Chain A, Solution Structure Of N-Terminal Pdz Domain From Mouse Tjp2
Length = 117
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 1314 KKSLGFSIVGGVDSPK---GEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTH 1370
K+ G ++ GG D+P GE I + + P G A GLL E D +++ N P++ H
Sbjct: 25 KRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPA--DGLLQENDRVVMVNGTPMEDVLH 82
Query: 1371 AEAITIFKKTKQGLVELVLQPNTTEA 1396
+ A+ +K+ + +V +P +
Sbjct: 83 SFAVQQLRKSGKIAAIVVKRPRKVQV 108
>pdb|1IHJ|A Chain A, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
pdb|1IHJ|B Chain B, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
Length = 98
Score = 41.6 bits (96), Expect = 0.004, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 1313 GKKSLGFSIVGG--VDSPKGEM-GIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRT 1369
GKKS G IV G DSP + GIF+K I P A G L GD IL N + ++ T
Sbjct: 15 GKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNST 74
Query: 1370 HAEAITIFKK 1379
I + K+
Sbjct: 75 EQAVIDLIKE 84
>pdb|1WFV|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Human Membrane
Associated Guanylate Kinase Inverted-2 (Kiaa0705 Protein)
Length = 103
Score = 41.2 bits (95), Expect = 0.004, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 1306 VSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPL 1365
V EKG K GFSI GG + +M ++V + G A +G + GD+I+ N E
Sbjct: 15 VDMEKG--AKGFGFSIRGGREY---KMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGEST 69
Query: 1366 QGRTHAEAITIFKKTKQGLVELVLQPNTTEADS 1398
+ THA AI + K + V L+L+ T S
Sbjct: 70 RDMTHARAIELIKSGGR-RVRLLLKRGTGSGPS 101
>pdb|2FN5|A Chain A, Nmr Structure Of The Neurabin Pdz Domain (502-594)
Length = 94
Score = 41.2 bits (95), Expect = 0.004, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 1303 LVRVSFEKGPGKKSLGFSIVG---GVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILL 1359
L V EK + LG SI+G G D+ ++GIFVKT+ G A G + D+I+
Sbjct: 5 LFPVELEKD--EDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVE 62
Query: 1360 FNNEPLQGRTHAEAITIFKKTKQGLVELVL 1389
+ L G T A T+ + TK G V V+
Sbjct: 63 VDGISLVGVTQNFAATVLRNTK-GNVRFVI 91
>pdb|1ZUB|A Chain A, Solution Structure Of The Rim1alpha Pdz Domain In Complex
With An Elks1b C-Terminal Peptide
Length = 114
Score = 40.8 bits (94), Expect = 0.005, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 34/65 (52%)
Query: 1317 LGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITI 1376
LG +VGG + G +G F+ + A G L GDE+L +N +PL G T+ E I
Sbjct: 39 LGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNI 98
Query: 1377 FKKTK 1381
++K
Sbjct: 99 ILESK 103
>pdb|2Q9V|A Chain A, Crystal Structure Of The C890s Mutant Of The 4th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
Length = 90
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 1317 LGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITI 1376
GF I+GG + GE I++ I P G A G L GDE++ + P+ G++H + +
Sbjct: 15 FGFRILGG--NEPGE-PIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQL 71
Query: 1377 FKK-TKQGLVELVLQ 1390
++ KQG V L ++
Sbjct: 72 MQQAAKQGHVNLTVR 86
>pdb|2W4F|A Chain A, Crystal Structure Of The First Pdz Domain Of Human Scrib1
Length = 97
Score = 40.4 bits (93), Expect = 0.007, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 1317 LGFSIVGGVDSP--KGE-MGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEA 1373
LG SI GG S KG+ GIF+ + G AA +G+ V GD++L N LQG H EA
Sbjct: 16 LGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRV-GDKLLEVNGVALQGAEHHEA 74
Query: 1374 ITIFK 1378
+ +
Sbjct: 75 VEALR 79
>pdb|3CH8|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 1313 GKKSLGFSIVGGVDSPKGEM-----GIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQG 1367
G LGFSI GGV GIFV + P G A++ LL GD+I+ N
Sbjct: 1 GSPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFIN 58
Query: 1368 RTHAEAITIFKKTKQGLVELVL 1389
H +A+++ KT Q VEL++
Sbjct: 59 IEHGQAVSLL-KTFQNTVELII 79
>pdb|2CSS|A Chain A, Solution Structure Of The Pdz Domain Of Human Kiaa0340
Protein
Length = 121
Score = 40.4 bits (93), Expect = 0.008, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 34/65 (52%)
Query: 1317 LGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITI 1376
LG +VGG + G +G F+ + A G L GDE+L +N +PL G T+ E I
Sbjct: 39 LGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNI 98
Query: 1377 FKKTK 1381
++K
Sbjct: 99 ILESK 103
>pdb|2IWQ|A Chain A, 7th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
Length = 123
Score = 40.4 bits (93), Expect = 0.008, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 1297 QTCEPTLVRVSFEKGPGKKSLGFSIVGGVDS----PKGEM--GIFVKTIFPHGQAAESGL 1350
Q+ +P RV + P KSLG SIVGG GE+ GIF+K + A ++G
Sbjct: 21 QSMQPR--RVELWREP-SKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGT 77
Query: 1351 LVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELV 1388
L GD I+ + L+ +H +A+ +K +V +V
Sbjct: 78 LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMV 115
>pdb|1WF8|A Chain A, Solution Structure Of The Pdz Domain Of
SpinophilinNEURABINII PROTEIN
Length = 107
Score = 40.0 bits (92), Expect = 0.009, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 1303 LVRVSFEKGPGKKSLGFSIVG---GVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILL 1359
L V EK + LG SI+G G D+ ++GIFVKT+ G A G + D+I+
Sbjct: 10 LFPVELEKD--EDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVE 67
Query: 1360 FNNEPLQGRTHAEAITIFKKTKQGLVELVL 1389
+ L G T A T+ + TK G V V+
Sbjct: 68 VDGISLVGVTQNFAATVLRNTK-GNVRFVI 96
>pdb|2R4H|B Chain B, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|A Chain A, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|C Chain C, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
Length = 112
Score = 40.0 bits (92), Expect = 0.010, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 1313 GKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAE 1372
G K GFS+ GG + M ++V + G A SG + GDEIL N E + H+
Sbjct: 33 GAKGFGFSLRGGREY---NMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSR 89
Query: 1373 AITIFK 1378
AI + K
Sbjct: 90 AIELIK 95
>pdb|2FCF|A Chain A, The Crystal Structure Of The 7th Pdz Domain Of Mpdz (Mupp-1)
Length = 103
Score = 40.0 bits (92), Expect = 0.010, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 1297 QTCEPTLVRVSFEKGPGKKSLGFSIVGGVDS----PKGEM--GIFVKTIFPHGQAAESGL 1350
Q+ +P RV + P KSLG SIVGG GE+ GIF+K + A ++G
Sbjct: 1 QSMQPR--RVELWREP-SKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGT 57
Query: 1351 LVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELV 1388
L GD I+ + L+ +H +A+ +K +V +V
Sbjct: 58 LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMV 95
>pdb|2EHR|A Chain A, Solution Structure Of The Sixth Pdz Domain Of Human Inad-
Like Protein
Length = 117
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 17/101 (16%)
Query: 1316 SLGFSIVGGVDSPK----GE--MGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRT 1369
SLG SIVGG K GE GIF+K + A ++ L GD+IL + LQ +
Sbjct: 28 SLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNAS 87
Query: 1370 HAEAITIFKKTKQGLVELVLQPNTTEADSKEGLNLQPRLIP 1410
H+EA+ K +V +V + L+ PR+IP
Sbjct: 88 HSEAVEAIKNAGNPVVFIV-----------QSLSSTPRVIP 117
>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Inad-
Like Protein
Length = 111
Score = 40.0 bits (92), Expect = 0.010, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 1317 LGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITI 1376
LGF IVGG S G+ V+TI P G A G L GD IL +QG T + +
Sbjct: 28 LGFGIVGGKTS-----GVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQV 82
Query: 1377 FKKTKQGLVELV 1388
+ + LV
Sbjct: 83 LRNCGNSVRMLV 94
>pdb|2IWN|A Chain A, 3rd Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 97
Score = 39.7 bits (91), Expect = 0.013, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 1315 KSLGFSIVGGVDSPKGE-MGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEA 1373
+ LG +I G + K E GIFVK+I G + GD+I+ + LQG T+ +A
Sbjct: 15 QGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQA 74
Query: 1374 ITIFKKTKQGLVELVLQPNTT 1394
+ + + T Q ++ +++ T
Sbjct: 75 VEVLRHTGQTVLLTLMRRGET 95
>pdb|2I04|A Chain A, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I04|B Chain B, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 39.3 bits (90), Expect = 0.014, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 1315 KSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAI 1374
+ GF++VGG D P + I K++ G AA G + GD I+ N+ + G THA+ +
Sbjct: 11 RGFGFTVVGG-DEPDEFLQI--KSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVV 67
Query: 1375 TIFKKTKQG 1383
IF+ G
Sbjct: 68 KIFQSIPIG 76
>pdb|1GQ5|A Chain A, Structural Determinants Of The Nherf Interaction With Beta2-
Ar And Pdgfr
Length = 91
Score = 39.3 bits (90), Expect = 0.016, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 1308 FEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQG 1367
EKGP GF + G KG++G +++ + P A ++GLL GD ++ N E ++
Sbjct: 9 LEKGP--NGYGFHLHG----EKGKLGQYIRLVEPGSPAEKAGLLA-GDRLVEVNGENVEK 61
Query: 1368 RTHAEAITIFKKTKQGLVELVLQPNTTEADS 1398
TH + ++ + + LV+ P E DS
Sbjct: 62 ETHQQVVSRIRAALNAVRLLVVDP---EEDS 89
>pdb|1WI4|A Chain A, Solution Structure Of The Pdz Domain Of Syntaxin Binding
Protein 4
Length = 109
Score = 39.3 bits (90), Expect = 0.017, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 1296 PQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGD 1355
P +P ++ K G LG I+GG++ +G + +++ + P G + G L GD
Sbjct: 9 PLDRDPAFRVITVTKETG---LGLKILGGINRNEGPL-VYIHEVIPGGDCYKDGRLKPGD 64
Query: 1356 EILLFNNEPLQGRTHAEAITIFKKTK 1381
+++ N E + G + EA +I + K
Sbjct: 65 QLVSINKESMIGVSFEEAKSIITRAK 90
>pdb|1I92|A Chain A, Structural Basis Of The Nherf Pdz1-Cftr Interaction
Length = 91
Score = 38.9 bits (89), Expect = 0.019, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 1308 FEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQG 1367
EKGP GF + G KG++G +++ + P A ++GLL GD ++ N E ++
Sbjct: 9 LEKGP--NGYGFHLHG----EKGKLGQYIRLVEPGSPAEKAGLLA-GDRLVEVNGENVEK 61
Query: 1368 RTHAEAITIFKKTKQGLVELVLQPNTTEADSK 1399
TH + ++ + + LV+ P E D++
Sbjct: 62 ETHQQVVSRIRAALNAVRLLVVDP---EQDTR 90
>pdb|2KPK|A Chain A, Magi-1 Pdz1
pdb|2KPL|A Chain A, Magi-1 Pdz1 E6CT
Length = 129
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 1315 KSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAI 1374
+ GF++VGG D P + I K++ G AA G + GD I+ N+ + G THA+ +
Sbjct: 29 RGFGFTVVGG-DEPDEFLQI--KSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVV 85
Query: 1375 TIFKKTKQG 1383
IF+ G
Sbjct: 86 KIFQSIPIG 94
>pdb|2JIL|A Chain A, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
pdb|2JIL|B Chain B, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
Length = 97
Score = 38.9 bits (89), Expect = 0.020, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 1316 SLGFSIVGGV-DSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAI 1374
+ GF I GG D + + ++ P G A G + GD +L + L G THAEA+
Sbjct: 15 TFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAM 74
Query: 1375 TIFKKTKQ 1382
+I K+ Q
Sbjct: 75 SILKQCGQ 82
>pdb|1X5Q|A Chain A, Solution Structure Of The First Pdz Domain Of Scribble
Homolog Protein (Hscrib)
Length = 110
Score = 38.9 bits (89), Expect = 0.024, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 1317 LGFSIVGGVDSP--KGE-MGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEA 1373
LG SI GG S KG+ GIF+ + G AA +G+ V GD++L N LQG H EA
Sbjct: 28 LGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRV-GDKLLEVNGVALQGAEHHEA 86
Query: 1374 ITIFK 1378
+ +
Sbjct: 87 VEALR 91
>pdb|1GQ4|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2ar And Pdgfr
Length = 90
Score = 38.9 bits (89), Expect = 0.024, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 1308 FEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQG 1367
EKGP GF + G KG++G +++ + P A ++GLL GD ++ N E ++
Sbjct: 8 LEKGP--NGYGFHLHG----EKGKLGQYIRLVEPGSPAEKAGLLA-GDRLVEVNGENVEK 60
Query: 1368 RTHAEAITIFKKTKQGLVELVLQP 1391
TH + ++ + + LV+ P
Sbjct: 61 ETHQQVVSRIRAALNAVRLLVVDP 84
>pdb|3HVQ|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase 1
Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
pdb|3HVQ|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase 1
Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
Length = 170
Score = 38.9 bits (89), Expect = 0.024, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 1303 LVRVSFEKGPGKKSLGFSIVG---GVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILL 1359
L V EK + LG SI+G G D+ ++GIFVKT+ G A G + D+I+
Sbjct: 81 LFPVELEKD--EDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVE 138
Query: 1360 FNNEPLQGRTHAEAITIFKKTKQGLVELVL 1389
+ L G T A T+ + TK G V V+
Sbjct: 139 VDGISLVGVTQNFAATVLRNTK-GNVRFVI 167
>pdb|2VRF|A Chain A, Crystal Structure Of The Human Beta-2-Syntrophin Pdz Domain
pdb|2VRF|B Chain B, Crystal Structure Of The Human Beta-2-Syntrophin Pdz Domain
pdb|2VRF|C Chain C, Crystal Structure Of The Human Beta-2-Syntrophin Pdz Domain
pdb|2VRF|D Chain D, Crystal Structure Of The Human Beta-2-Syntrophin Pdz Domain
Length = 95
Score = 38.9 bits (89), Expect = 0.024, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 1304 VRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNE 1363
VRV ++ G LG SI GG ++ M I + IFP A +S L GD IL N
Sbjct: 7 VRVVKQEAGG---LGISIKGGREN---RMPILISKIFPGLAADQSRALRLGDAILSVNGT 60
Query: 1364 PLQGRTHAEAITIFKKT-KQGLVEL 1387
L+ TH +A+ K+ K+ L+E+
Sbjct: 61 DLRQATHDQAVQALKRAGKEVLLEV 85
>pdb|3HPM|A Chain A, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With The C
Tail Peptide Of Glur2
pdb|3HPM|B Chain B, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With The C
Tail Peptide Of Glur2
Length = 111
Score = 38.5 bits (88), Expect = 0.025, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 14/97 (14%)
Query: 1312 PGKKSL--------GFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNE 1363
PGK +L G SI GG G +++ +F + AA G + GDEI N
Sbjct: 6 PGKVTLQKDAQNLIGISIGGGAQYCPG---LYIVQVFDNTPAALDGTVAAGDEITGVNGR 62
Query: 1364 PLQGRTHAEAITIFKKTKQGLVELVLQPNTTEADSKE 1400
++G+T E + ++ K E+ + N +AD K+
Sbjct: 63 SIKGKTKVEVAKMIQEVKG---EVTIHYNKLQADPKQ 96
>pdb|3TSV|A Chain A, Crystal Structure Of The Third Pdz Domain Of The Human Zo-1
Maguk Protein
Length = 124
Score = 38.5 bits (88), Expect = 0.026, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Query: 1301 PTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLF 1360
P++ V F KG S+G + GG D +GIFV + AA+ GL EGD+IL
Sbjct: 28 PSMKLVKFRKG---DSVGLRLAGGND-----VGIFVAGVLEDSPAAKEGL-EEGDQILRV 78
Query: 1361 NNEPLQGRTHAEAITIFKKTKQG 1383
NN EA+ +G
Sbjct: 79 NNVDFTNIIREEAVLFLLDLPKG 101
>pdb|1WHA|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 105
Score = 38.5 bits (88), Expect = 0.026, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 1314 KKSLGFSIVGGVDSP---KGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTH 1370
++ LGFSI GG S G+ GIFV I G A +G L GD +L N + H
Sbjct: 17 ERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARH 76
Query: 1371 AEAITIF 1377
A+++
Sbjct: 77 DHAVSLL 83
>pdb|2I0I|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|C Chain C, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 38.5 bits (88), Expect = 0.027, Method: Composition-based stats.
Identities = 32/78 (41%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 1313 GKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAE 1372
G LGF+IVGG D GE GIF+ I G A SG L +GD I+ N+ L+ +H +
Sbjct: 13 GSTGLGFNIVGGED---GE-GIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQ 68
Query: 1373 AITIFKKTKQGLVELVLQ 1390
A K Q V +V Q
Sbjct: 69 AAAALKNAGQA-VTIVAQ 85
>pdb|2QT5|A Chain A, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
pdb|2QT5|B Chain B, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
Length = 200
Score = 38.5 bits (88), Expect = 0.028, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 1316 SLGFSIVGGV-DSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAI 1374
+ GF I GG D + + + P G A G + GD +L + L G THAEA+
Sbjct: 118 TFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAM 177
Query: 1375 TIFKKTKQ 1382
+I K+ Q
Sbjct: 178 SILKQCGQ 185
>pdb|2KBS|A Chain A, Solution Structure Of Harmonin Pdz2 In Complex With The
Carboxyl Tail Peptide Of Cadherin23
Length = 92
Score = 38.1 bits (87), Expect = 0.033, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 1313 GKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAE 1372
G + LG SI G P + GIF+ + P +AE GL + GD+I+ N H E
Sbjct: 11 GSRGLGCSISSG---PIQKPGIFISHVKPGSLSAEVGLEI-GDQIVEVNGVDFSNLDHKE 66
Query: 1373 AITIFKKTKQGLVELV 1388
A+ + K ++ + +V
Sbjct: 67 AVNVLKSSRSLTISIV 82
>pdb|1UF1|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Kiaa1526 Protein
Length = 128
Score = 38.1 bits (87), Expect = 0.034, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 1305 RVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEP 1364
+V+ G G+ SLG +I GG + +GI++ + P +A SGL V GD+IL N
Sbjct: 23 KVNLVLGDGR-SLGLTIRGGAEY---GLGIYITGVDPGSEAEGSGLKV-GDQILEVNGRS 77
Query: 1365 LQGRTHAEAITIFKKTKQ 1382
H EA+ + K ++
Sbjct: 78 FLNILHDEAVRLLKSSRH 95
>pdb|3TSW|A Chain A, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|C Chain C, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|D Chain D, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSZ|A Chain A, Crystal Structure Of Pdz3-Sh3-Guk Core Module From Human
Zo-1 In Complex With 12mer Peptide From Human Jam-A
Cytoplasmic Tail
Length = 391
Score = 38.1 bits (87), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Query: 1298 TCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEI 1357
P++ V F KG S+G + GG D +GIFV + AA+ GL EGD+I
Sbjct: 5 ILRPSMKLVKFRKGD---SVGLRLAGGND-----VGIFVAGVLEDSPAAKEGL-EEGDQI 55
Query: 1358 LLFNNEPLQGRTHAEAITIF 1377
L NN EA+
Sbjct: 56 LRVNNVDFTNIIREEAVLFL 75
>pdb|2DJT|A Chain A, Solution Structures Of The Pdz Domain Of Human Unnamed
Protein Product
Length = 104
Score = 38.1 bits (87), Expect = 0.038, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 1307 SFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQ 1366
S E G G ++ GG D G+ + V+ + G A G L GD +L N E Q
Sbjct: 14 SVELVRGYAGFGLTLGGGRDV-AGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQ 72
Query: 1367 GRTHAEAI 1374
G THA+A+
Sbjct: 73 GLTHAQAV 80
>pdb|1WFG|A Chain A, Pdz Domain Of Human Rim2b
Length = 131
Score = 37.7 bits (86), Expect = 0.042, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 1317 LGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITI 1376
LG +VGG + G + F+ + A G L GDE+L +N LQG T E I
Sbjct: 50 LGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNI 109
Query: 1377 FKKTK-QGLVELVL 1389
++K + VELV+
Sbjct: 110 ILESKPEPQVELVV 123
>pdb|3TSW|B Chain B, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
Length = 194
Score = 37.7 bits (86), Expect = 0.053, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Query: 1301 PTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLF 1360
P++ V F KG S+G + GG D +GIFV + AA+ GL EGD+IL
Sbjct: 1 PSMKLVKFRKG---DSVGLRLAGGND-----VGIFVAGVLEDSPAAKEGL-EEGDQILRV 51
Query: 1361 NNEPLQGRTHAEAITIFKKTKQG 1383
NN EA+ +G
Sbjct: 52 NNVDFTNIIREEAVLFLLDLPKG 74
>pdb|2G5M|B Chain B, Spinophilin Pdz Domain
Length = 113
Score = 37.4 bits (85), Expect = 0.059, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 1303 LVRVSFEKGPGKKSLGFSIVG---GVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILL 1359
L V EK + LG SI+G G D ++GIFVKT+ G A G + D ++
Sbjct: 5 LFPVELEKD--SEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVE 62
Query: 1360 FNNEPLQGRTHAEAITIFKKTK 1381
+ L G T + A ++ + TK
Sbjct: 63 VDGTSLVGVTQSFAASVLRNTK 84
>pdb|2D92|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Inad-Like
Protein
Length = 108
Score = 37.4 bits (85), Expect = 0.060, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 1315 KSLGFSIVGGVD--SPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAE 1372
K LGFSI+ D P + I ++++ G A SG L+ GD ++ N L + AE
Sbjct: 26 KGLGFSILDYQDPLDPTRSV-IVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAE 84
Query: 1373 AITIFKKTKQGLVEL 1387
A+ I K GLV L
Sbjct: 85 AVEILKAVPPGLVHL 99
>pdb|1PDR|A Chain A, Crystal Structure Of The Third Pdz Domain From The Human
Homolog Of Discs Large Protein
Length = 99
Score = 37.4 bits (85), Expect = 0.063, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 1313 GKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAE 1372
G LGF+IVGG D GE GIF+ I G A SG L +GD I+ N+ L+ +H +
Sbjct: 16 GSTGLGFNIVGGED---GE-GIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQ 71
Query: 1373 AITIFKKTKQGL 1384
A K Q +
Sbjct: 72 AAAALKNAGQAV 83
>pdb|3SHW|A Chain A, Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule Complex
With Connexin-45 Peptide
Length = 468
Score = 37.0 bits (84), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Query: 1306 VSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPL 1365
V F KG S+G + GG D +GIFV + AA+ GL EGD+IL NN
Sbjct: 5 VKFRKG---DSVGLRLAGGND-----VGIFVAGVLEDSPAAKEGL-EEGDQILRVNNVDF 55
Query: 1366 QGRTHAEAITIFKKTKQG 1383
EA+ +G
Sbjct: 56 TNIIREEAVLFLLDLPKG 73
>pdb|3K1R|A Chain A, Structure Of Harmonin Npdz1 In Complex With The Sam-Pbm Of
Sans
Length = 192
Score = 36.6 bits (83), Expect = 0.12, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 1315 KSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAI 1374
+ LG S+ GG++ G+F+ + GQA GL V GDEI+ N + TH E I
Sbjct: 96 EGLGLSVRGGLEFG---CGLFISHLIKGGQADSVGLQV-GDEIVRINGYSISSCTHEEVI 151
Query: 1375 TIFKKTK 1381
+ + K
Sbjct: 152 NLIRTEK 158
>pdb|2DMZ|A Chain A, Solution Structure Of The Third Pdz Domain Of Human Inad-
Like Protein
Length = 129
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 1315 KSLGFSIVGGVD-SPKGEM-GIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAE 1372
+SLG IVG V S GE GI+VK++ P A +G + D+I+ + +QG + +
Sbjct: 27 QSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHD 86
Query: 1373 AITIFKKTKQGLVELVL 1389
+ + + Q +V L L
Sbjct: 87 VVEVLRNAGQ-VVHLTL 102
>pdb|3SHU|A Chain A, Crystal Structure Of Zo-1 Pdz3
pdb|3SHU|B Chain B, Crystal Structure Of Zo-1 Pdz3
Length = 95
Score = 35.8 bits (81), Expect = 0.17, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Query: 1306 VSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPL 1365
V F KG S+G + GG D +GIFV + AA+ GL EGD+IL NN
Sbjct: 8 VKFRKG---DSVGLRLAGGND-----VGIFVAGVLEDSPAAKEGL-EEGDQILRVNNVDF 58
Query: 1366 QGRTHAEAITIFKKTKQG 1383
EA+ +G
Sbjct: 59 TNIIREEAVLFLLDLPKG 76
>pdb|2EEI|A Chain A, Solution Structure Of Second Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 106
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 1300 EPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILL 1359
+P L + E G S GFS+ + +G+ G+++ I P G A +G+L + D ++
Sbjct: 8 QPRLCYLVKEGG----SYGFSL----KTVQGKKGVYMTDITPQGVAMRAGVLAD-DHLIE 58
Query: 1360 FNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNT 1393
N E ++ +H E + KK+ ++ L++ T
Sbjct: 59 VNGENVEDASHEEVVEKVKKSGSRVMFLLVDKET 92
>pdb|3HPK|A Chain A, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl Tail
Of Glur2
pdb|3HPK|B Chain B, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl Tail
Of Glur2
Length = 125
Score = 35.4 bits (80), Expect = 0.24, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 14/97 (14%)
Query: 1312 PGKKSL--------GFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNE 1363
PGK +L G SI GG +++ +F + AA G + GDEI N
Sbjct: 20 PGKVTLQKDAQNLIGISIGGGAQYCPC---LYIVQVFDNTPAALDGTVAAGDEITGVNGR 76
Query: 1364 PLQGRTHAEAITIFKKTKQGLVELVLQPNTTEADSKE 1400
++G+T E + ++ K E+ + N +AD K+
Sbjct: 77 SIKGKTKVEVAKMIQEVKG---EVTIHYNKLQADPKQ 110
>pdb|2HE4|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Nherf-2 (Slc9a3r2) Interacting With A Mode 1 Pdz Binding
Motif
Length = 90
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 14/98 (14%)
Query: 1296 PQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGD 1355
P+ C KGP + GF++ S K G +++++ P AA SGL + D
Sbjct: 5 PRLCH-------LRKGP--QGYGFNL----HSDKSRPGQYIRSVDPGSPAARSGLRAQ-D 50
Query: 1356 EILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNT 1393
++ N + ++G HAE + K + LV+ P+T
Sbjct: 51 RLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 88
>pdb|2JRE|A Chain A, C60-1, A Pdz Domain Designed Using Statistical Coupling
Analysis
Length = 108
Score = 35.4 bits (80), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 1316 SLGFSIVGGVD-SPKGEM-GIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEA 1373
SLG SI G D S GE GI+VK++ P AA G + D+IL ++ +QG ++
Sbjct: 26 SLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDV 85
Query: 1374 ITIFK 1378
+ + +
Sbjct: 86 VEVLR 90
>pdb|3EGG|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase 1
Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
pdb|3EGG|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase 1
Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
Length = 170
Score = 35.0 bits (79), Expect = 0.32, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 1303 LVRVSFEKGPGKKSLGFSIVG---GVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILL 1359
L V EK + LG SI+G G D ++GIFVKT+ G A G + D ++
Sbjct: 81 LFPVELEKD--SEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVE 138
Query: 1360 FNNEPLQGRTHAEAITIFKKTK 1381
+ L G T + A ++ + TK
Sbjct: 139 VDGTSLVGVTQSFAASVLRNTK 160
>pdb|2YUY|A Chain A, Solution Structure Of Pdz Domain Of Rho Gtpase Activating
Protein 21
Length = 126
Score = 34.7 bits (78), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 1334 IFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQP 1391
IFVK + G A E+GL GD I+ N E + G+T+++ I + + + L EL + P
Sbjct: 63 IFVKQVKEGGPAFEAGLCT-GDRIIKVNGESVIGKTYSQVIALIQNSDTTL-ELSVMP 118
>pdb|1X5N|A Chain A, Solution Structure Of The Second Pdz Domain Of Harmonin
Protein
Length = 114
Score = 34.7 bits (78), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 1313 GKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAE 1372
G + LG SI G P + GIF+ + P +AE GL + GD+I+ N H E
Sbjct: 25 GSRGLGCSISSG---PIQKPGIFISHVKPGSLSAEVGLEI-GDQIVEVNGVDFSNLDHKE 80
Query: 1373 AITIFKKTKQGLVELV 1388
A+ + K ++ + +V
Sbjct: 81 AVNVLKSSRSLTISIV 96
>pdb|3EGH|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase 1
Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
pdb|3EGH|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase 1
Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
Length = 170
Score = 34.7 bits (78), Expect = 0.37, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 1303 LVRVSFEKGPGKKSLGFSIVG---GVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILL 1359
L V EK + LG SI+G G D ++GIFVKT+ G A G + D ++
Sbjct: 81 LFPVELEKD--SEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVE 138
Query: 1360 FNNEPLQGRTHAEAITIFKKTK 1381
+ L G T + A ++ + TK
Sbjct: 139 VDGTSLVGVTQSFAASVLRNTK 160
>pdb|1UEP|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 103
Score = 34.7 bits (78), Expect = 0.38, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 1314 KKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEA 1373
+ GF I+GG D P I + + G A G L GDE++ + P+ G+TH
Sbjct: 19 ESGFGFRILGG-DEPG--QPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYV 75
Query: 1374 ITIF-KKTKQGLVELVLQ 1390
I + + G V L ++
Sbjct: 76 IDLMHHAARNGQVNLTVR 93
>pdb|3CBY|A Chain A, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
pdb|3CBY|B Chain B, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
Length = 108
Score = 34.7 bits (78), Expect = 0.40, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 1317 LGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITI 1376
LG SIVG + +G+ GI++ +I G A G + GD +L N+ + ++ +A+ +
Sbjct: 19 LGISIVGQSNE-RGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRV 77
Query: 1377 FK 1378
+
Sbjct: 78 LR 79
>pdb|3CBX|A Chain A, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
pdb|3CBX|B Chain B, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
Length = 105
Score = 34.7 bits (78), Expect = 0.40, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 1317 LGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITI 1376
LG SIVG + +G+ GI++ +I G A G + GD +L N+ + ++ +A+ +
Sbjct: 19 LGISIVGQSNE-RGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRV 77
Query: 1377 FK 1378
+
Sbjct: 78 LR 79
>pdb|4E34|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz Domain
Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E34|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz Domain
Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E35|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz Domain
Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E35|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz Domain
Bound To Ical36-L (Ansrwptsil) Peptide
Length = 87
Score = 34.7 bits (78), Expect = 0.41, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 1315 KSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAI 1374
+ LG SI GG + + I + I P A G L GD IL N L+ H EA+
Sbjct: 14 EGLGISITGGKEH---GVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAV 70
Query: 1375 TIFKKTKQGLVEL 1387
TI + ++G +E
Sbjct: 71 TILSQ-QRGEIEF 82
>pdb|2LOB|A Chain A, Pdz Domain Of Cal (Cystic Fibrosis Transmembrane
Regulator-Associated Ligand)
Length = 112
Score = 34.7 bits (78), Expect = 0.41, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 1315 KSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAI 1374
+ LG SI GG + + I + I P A G L GD IL N L+ H EA+
Sbjct: 39 EGLGISITGGKEH---GVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAV 95
Query: 1375 TIFKKTKQGLVEL 1387
TI + ++G +E
Sbjct: 96 TILSQ-QRGEIEF 107
>pdb|2DC2|A Chain A, Solution Structure Of Pdz Domain
Length = 103
Score = 34.7 bits (78), Expect = 0.41, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 1315 KSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAI 1374
+ LG SI GG + + I + I P A G L GD IL N L+ H EA+
Sbjct: 21 EGLGISITGGKEH---GVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAV 77
Query: 1375 TIFKKTKQGLVEL 1387
TI + ++G +E
Sbjct: 78 TILSQ-QRGEIEF 89
>pdb|3CC0|A Chain A, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|B Chain B, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|C Chain C, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
Length = 108
Score = 34.7 bits (78), Expect = 0.42, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 1317 LGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITI 1376
LG SIVG + +G+ GI++ +I G A G + GD +L N+ + ++ +A+ +
Sbjct: 19 LGISIVGQSNE-RGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRV 77
Query: 1377 FK 1378
+
Sbjct: 78 LR 79
>pdb|2VPH|A Chain A, Crystal Structure Of The Human Protein Tyrosine Phosphatase,
Non-Receptor Type 4, Pdz Domain
pdb|2VPH|B Chain B, Crystal Structure Of The Human Protein Tyrosine Phosphatase,
Non-Receptor Type 4, Pdz Domain
Length = 100
Score = 34.3 bits (77), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Query: 1317 LGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGL--LVEGDEILLFNNEPLQGRTHAEAI 1374
GF++ GG D +M + V + P G A+ + L EGD+++L N + TH + +
Sbjct: 18 FGFNVKGGYDQ---KMPVIVSRVAP-GTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVV 73
Query: 1375 TIFKKTKQ---GLVELVLQPNTTEA 1396
K + + G + L+++PN E+
Sbjct: 74 LFIKASCERHSGELMLLVRPNAVES 98
>pdb|2REY|A Chain A, Crystal Structure Of The Pdz Domain Of Human Dishevelled 2
(Homologous To Drosophila Dsh)
Length = 100
Score = 34.3 bits (77), Expect = 0.52, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 1317 LGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITI 1376
LG SIVG + +G+ GI++ +I G A G + GD +L N+ + ++ +A+ +
Sbjct: 19 LGISIVGQSNE-RGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRV 77
Query: 1377 FK 1378
+
Sbjct: 78 LR 79
>pdb|2KAW|A Chain A, Nmr Structure Of The Mdvl1 Pdz Domain In Complex With Its
Inhibitor
Length = 90
Score = 34.3 bits (77), Expect = 0.56, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 1317 LGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITI 1376
LG SIVG + +G+ GI++ +I G A G + GD +L N+ + ++ +A+ +
Sbjct: 15 LGISIVGQSND-RGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRV 73
Query: 1377 FKK 1379
++
Sbjct: 74 LRE 76
>pdb|3CBZ|A Chain A, The Dvl2 Pdz Domain In Complex With The N2 Inhibitory
Peptide
Length = 108
Score = 34.3 bits (77), Expect = 0.56, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 1317 LGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITI 1376
LG SIVG + +G+ GI++ +I G A G + GD +L N+ + ++ +A+ +
Sbjct: 19 LGISIVGQSNE-RGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRV 77
Query: 1377 FK 1378
+
Sbjct: 78 LR 79
>pdb|2LC6|A Chain A, Solution Structure Of Par-6 Q144cL164C
Length = 128
Score = 33.9 bits (76), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 1305 RVSFEKGPGKKSLGFSIVGG------VDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEIL 1358
RV K K LGF I G + + GIF+ + P G A +GLL DE++
Sbjct: 33 RVRLCKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVI 92
Query: 1359 LFNNEPLQGRT 1369
N + G+T
Sbjct: 93 EVNGIEVAGKT 103
>pdb|1NF3|C Chain C, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|D Chain D, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 128
Score = 33.9 bits (76), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 1305 RVSFEKGPGKKSLGFSIVGGVD---SPKGEM---GIFVKTIFPHGQAAESGLLVEGDEIL 1358
RV K +K LGF I G +P G GIF+ + P G A +GLL DE+L
Sbjct: 32 RVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVL 91
Query: 1359 LFNNEPLQGRT 1369
N + G++
Sbjct: 92 EVNGIEVSGKS 102
>pdb|4E3B|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E3B|B Chain B, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 102
Score = 33.9 bits (76), Expect = 0.63, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 1317 LGFSIVGGVDS---------PKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQG 1367
LGFSI GG+D K + GI+V + G A +GL + GD+I+ N +
Sbjct: 19 LGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQI-GDKIMQVNGWDMTM 77
Query: 1368 RTHAEAITIFKKTKQGLVELVL 1389
TH +A K + +V L++
Sbjct: 78 VTHDQARKRLTKRSEEVVRLLV 99
>pdb|3SFJ|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
pdb|3SFJ|C Chain C, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
Length = 104
Score = 33.9 bits (76), Expect = 0.63, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 1317 LGFSIVGGVDS---------PKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQG 1367
LGFSI GG+D K + GI+V + G A +GL + GD+I+ N +
Sbjct: 21 LGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQI-GDKIMQVNGWDMTM 79
Query: 1368 RTHAEAITIFKKTKQGLVELVL 1389
TH +A K + +V L++
Sbjct: 80 VTHDQARKRLTKRSEEVVRLLV 101
>pdb|1RY4|A Chain A, Nmr Structure Of The Crib-Pdz Module Of Par-6
Length = 128
Score = 33.9 bits (76), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 1305 RVSFEKGPGKKSLGFSIVGG------VDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEIL 1358
RV K K LGF I G + + GIF+ + P G A +GLL DE++
Sbjct: 33 RVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVI 92
Query: 1359 LFNNEPLQGRT 1369
N + G+T
Sbjct: 93 EVNGIEVAGKT 103
>pdb|2OCS|A Chain A, The Crystal Structure Of The First Pdz Domain Of Human
Nherf-2 (slc9a3r2)
Length = 88
Score = 33.9 bits (76), Expect = 0.66, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 1313 GKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAE 1372
G++ GF + G KG G F++ + P G AE+ L GD ++ N ++G TH +
Sbjct: 10 GEQGYGFHLHG----EKGRRGQFIRRVEP-GSPAEAAALRAGDRLVEVNGVNVEGETHHQ 64
Query: 1373 AITIFKKTK-QGLVELVLQPNTT 1394
+ K + Q + +V Q +T+
Sbjct: 65 VVQRIKAVEGQTRLLVVDQEDTS 87
>pdb|1L6O|A Chain A, Xenopus Dishevelled Pdz Domain
pdb|1L6O|B Chain B, Xenopus Dishevelled Pdz Domain
pdb|1L6O|C Chain C, Xenopus Dishevelled Pdz Domain
Length = 95
Score = 33.5 bits (75), Expect = 0.91, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 1317 LGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITI 1376
LG SIVG + +G+ GI++ +I G A G + GD +L N+ + ++ +A+ +
Sbjct: 15 LGISIVGQSNE-RGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRV 73
Query: 1377 FK 1378
+
Sbjct: 74 LR 75
>pdb|2F0A|A Chain A, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|B Chain B, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|C Chain C, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|D Chain D, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
Length = 98
Score = 33.5 bits (75), Expect = 1.0, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 1317 LGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITI 1376
LG SIVG + +G+ GI++ +I G A G + GD +L N+ + ++ +A+ +
Sbjct: 15 LGISIVGQSNE-RGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRV 73
Query: 1377 FK 1378
+
Sbjct: 74 LR 75
>pdb|2VZ5|A Chain A, Structure Of The Pdz Domain Of Tax1 (Human T-Cell Leukemia
Virus Type I) Binding Protein 3
Length = 139
Score = 33.5 bits (75), Expect = 1.0, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 1317 LGFSIVGGVDS---------PKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQG 1367
LGFSI GG+D K + GI+V + G A +GL + GD+I+ N +
Sbjct: 40 LGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQI-GDKIMQVNGWDMTM 98
Query: 1368 RTHAEAITIFKKTKQGLVELVL 1389
TH +A K + +V L++
Sbjct: 99 VTHDQARKRLTKRSEEVVRLLV 120
>pdb|3FY5|A Chain A, Dishevelled Pdz Domain Homodimer
pdb|3FY5|B Chain B, Dishevelled Pdz Domain Homodimer
Length = 91
Score = 33.1 bits (74), Expect = 1.1, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 1317 LGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITI 1376
LG SIVG + +G+ GI++ +I G A G + GD +L N+ + ++ +A+ +
Sbjct: 13 LGISIVGQSNE-RGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRV 71
Query: 1377 FK 1378
+
Sbjct: 72 LR 73
>pdb|3DJ3|A Chain A, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|B Chain B, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|C Chain C, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|D Chain D, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
Length = 113
Score = 33.1 bits (74), Expect = 1.1, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 1317 LGFSIVGGVDS---------PKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQG 1367
LGFSI GG+D K + GI+V + G A +GL + GD+I+ N +
Sbjct: 30 LGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQI-GDKIMQVNGWDMTM 88
Query: 1368 RTHAEAITIFKKTKQGLVELVL 1389
TH +A K + +V L++
Sbjct: 89 VTHDQARKRLTKRSEEVVRLLV 110
>pdb|1MC7|A Chain A, Solution Structure Of Mdvl1 Pdz Domain
Length = 95
Score = 33.1 bits (74), Expect = 1.1, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 1317 LGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITI 1376
LG SIVG + +G+ GI++ +I G A G + GD +L N+ + ++ +A+ +
Sbjct: 12 LGISIVGQSND-RGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRV 70
Query: 1377 FKK 1379
++
Sbjct: 71 LRE 73
>pdb|3GJ9|A Chain A, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|3GJ9|B Chain B, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|2L4S|A Chain A, Promiscuous Binding At The Crossroads Of Numerous Cancer
Pathways: Insight From The Binding Of Gip With
Glutaminase L
pdb|2L4T|A Chain A, GipGLUTAMINASE L PEPTIDE COMPLEX
Length = 124
Score = 33.1 bits (74), Expect = 1.2, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 1317 LGFSIVGGVDS---------PKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQG 1367
LGFSI GG+D K + GI+V + G A +GL + GD+I+ N +
Sbjct: 29 LGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQI-GDKIMQVNGWDMTM 87
Query: 1368 RTHAEAITIFKKTKQGLVELVL 1389
TH +A K + +V L++
Sbjct: 88 VTHDQARKRLTKRSEEVVRLLV 109
>pdb|2KG2|A Chain A, Solution Structure Of A Pdz Protein
Length = 124
Score = 33.1 bits (74), Expect = 1.2, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 1317 LGFSIVGGVDS---------PKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQG 1367
LGFSI GG+D K + GI+V + G A +GL + GD+I+ N +
Sbjct: 29 LGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQI-GDKIMQVNGWDMTM 87
Query: 1368 RTHAEAITIFKKTKQGLVELVL 1389
TH +A K + +V L++
Sbjct: 88 VTHDQARKRLTKRSEEVVRLLV 109
>pdb|4F8K|A Chain A, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
pdb|4F8K|B Chain B, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
Length = 109
Score = 33.1 bits (74), Expect = 1.2, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 33/67 (49%)
Query: 1339 IFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTTEADS 1398
+ G AE L++GD +L N + HA+ + + +K+ + LVL ++ E
Sbjct: 33 VIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDGDSYEKAV 92
Query: 1399 KEGLNLQ 1405
K ++L+
Sbjct: 93 KNQVDLK 99
>pdb|1X8S|A Chain A, Structure Of The Par-6 Pdz Domain With A Pals1 Internal
Ligand
pdb|2LC7|A Chain A, Solution Structure Of The Isolated Par-6 Pdz Domain
Length = 102
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 1305 RVSFEKGPGKKSLGFSIVGG------VDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEIL 1358
RV K K LGF I G + + GIF+ + P G A +GLL DE++
Sbjct: 7 RVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVI 66
Query: 1359 LFNNEPLQGRT 1369
N + G+T
Sbjct: 67 EVNGIEVAGKT 77
>pdb|1WH1|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Kiaa1095
Protein
Length = 124
Score = 33.1 bits (74), Expect = 1.3, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 1314 KKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEA 1373
+ LG ++ D + ++GI++ I P+ AA+ G + EGD I+ N +Q R A A
Sbjct: 31 QDKLGLTVCYRTDD-EDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNREEAVA 89
Query: 1374 ITIFKKTK 1381
+ ++ K
Sbjct: 90 LLTSEENK 97
>pdb|1RZX|A Chain A, Crystal Structure Of A Par-6 Pdz-Peptide Complex
Length = 98
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 1305 RVSFEKGPGKKSLGFSIVGG------VDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEIL 1358
RV K K LGF I G + + GIF+ + P G A +GLL DE++
Sbjct: 5 RVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVI 64
Query: 1359 LFNNEPLQGRT 1369
N + G+T
Sbjct: 65 EVNGIEVAGKT 75
>pdb|3DIW|A Chain A, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DIW|B Chain B, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DJ1|A Chain A, Crystal Structure Of Tip-1 Wild Type
pdb|3DJ1|B Chain B, Crystal Structure Of Tip-1 Wild Type
Length = 124
Score = 32.7 bits (73), Expect = 1.4, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 1317 LGFSIVGGVDS---------PKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQG 1367
LGFSI GG+D K + GI+V + G A +GL + GD+I+ N +
Sbjct: 29 LGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQI-GDKIMQVNGWDMTM 87
Query: 1368 RTHAEAITIFKKTKQGLVELVL 1389
TH +A K + +V L++
Sbjct: 88 VTHDQARKRLTKRSEEVVRLLV 109
>pdb|2EDZ|A Chain A, Solution Structures Of The Pdz Domain Of Mus Musculus Pdz
Domain-Containing Protein 1
Length = 114
Score = 32.7 bits (73), Expect = 1.5, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 33/67 (49%)
Query: 1339 IFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTTEADS 1398
+ G AE L++GD +L N + HA+ + + +K+ + LVL ++ E
Sbjct: 44 VIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDGDSYEKAV 103
Query: 1399 KEGLNLQ 1405
K ++L+
Sbjct: 104 KNQVDLK 110
>pdb|3NGH|A Chain A, Molecular Analysis Of The Interaction Of The Hdl Receptor
Sr-Bi With The Adaptor Protein Pdzk1
pdb|3NGH|B Chain B, Molecular Analysis Of The Interaction Of The Hdl Receptor
Sr-Bi With The Adaptor Protein Pdzk1
Length = 106
Score = 32.7 bits (73), Expect = 1.5, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 33/67 (49%)
Query: 1339 IFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTTEADS 1398
+ G AE L++GD +L N + HA+ + + +K+ + LVL ++ E
Sbjct: 32 VIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDGDSYEKAV 91
Query: 1399 KEGLNLQ 1405
K ++L+
Sbjct: 92 KNQVDLK 98
>pdb|3QE1|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27 (Snx27)
Fused To The C-Terminal Residues (Eseskv) Of Girk3
Length = 107
Score = 32.7 bits (73), Expect = 1.7, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 1301 PTLVR-VSFEKGPGKKSLGFSIVGG-VDSPKGEMGI---FVKTIFPHGQAAESGLLVEGD 1355
P +VR V E G G G GG + S GE+ V + P G A +G+ +GD
Sbjct: 7 PRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVR-KGD 65
Query: 1356 EILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTTEADSK 1399
IL N ++G TH + + + + ++ EL+L + E++SK
Sbjct: 66 RILEVNGVNVEGATHKQVVDLIRAGEK---ELILTVLSVESESK 106
>pdb|1VA8|A Chain A, Solution Structure Of The Pdz Domain Of Pals1 Protein
Length = 113
Score = 32.3 bits (72), Expect = 1.9, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 1317 LGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITI 1376
LG ++ +DS + + I G A +SGLL EGDE+L N ++G+ E +
Sbjct: 39 LGATVRNEMDS------VIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDL 92
Query: 1377 FKKTKQGLVELVLQPNT 1393
G + VL P++
Sbjct: 93 LSDM-HGTLTFVLIPSS 108
>pdb|3NFK|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With The
C- Terminus Of A Rabies Virus G Protein
pdb|3NFK|B Chain B, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With The
C- Terminus Of A Rabies Virus G Protein
pdb|3NFL|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With The
C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|B Chain B, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With The
C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|C Chain C, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With The
C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|D Chain D, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With The
C- Terminus Of The Glun2a Nmda Receptor Subunit
Length = 107
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Query: 1317 LGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGL--LVEGDEILLFNNEPLQGRTHAEAI 1374
GF++ GG D +M + V + P G A+ + L EGD+++L N + TH + +
Sbjct: 31 FGFNVKGGYDQ---KMPVIVSRVAP-GTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVV 86
Query: 1375 TIFKKTKQ---GLVELVLQPN 1392
K + + G + L+++PN
Sbjct: 87 LFIKASCERHSGELMLLVRPN 107
>pdb|1B8Q|A Chain A, Solution Structure Of The Extended Neuronal Nitric Oxide
Synthase Pdz Domain Complexed With An Associated Peptide
Length = 127
Score = 32.3 bits (72), Expect = 2.2, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 1300 EPTLVRVS-FEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEIL 1358
EP ++ V F++ G LGF + V P + + + G A +SGL+ GD IL
Sbjct: 6 EPNVISVRLFKRKVG--GLGFLVKERVSKPP----VIISDLIRGGAAEQSGLIQAGDIIL 59
Query: 1359 LFNNEPLQGRTHAEAITIFK 1378
N+ PL ++ A+ + +
Sbjct: 60 AVNDRPLVDLSYDSALEVLR 79
>pdb|2GZV|A Chain A, The Cystal Structure Of The Pdz Domain Of Human Pick1 (Casp
Target)
Length = 114
Score = 31.6 bits (70), Expect = 3.8, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 1312 PGKKSL--------GFSIVGGVD-SPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNN 1362
PGK +L G SI GG P +++ +F + AA G + GDEI N
Sbjct: 25 PGKVTLQKDAQNLIGISIGGGAQYCP----CLYIVQVFDNTPAALDGTVAAGDEITGVNG 80
Query: 1363 EPLQGRTHAEAITIFKKTK 1381
++G+T E + ++ K
Sbjct: 81 RSIKGKTKVEVAKMIQEVK 99
>pdb|2PKU|A Chain A, Solution Structure Of Pick1 Pdz In Complex With The Carboxyl
Tail Peptide Of Glur2
Length = 87
Score = 31.6 bits (70), Expect = 3.9, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 1312 PGKKSL--------GFSIVGGVD-SPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNN 1362
PGK +L G SI GG P +++ +F + AA G + GDEI N
Sbjct: 3 PGKVTLQKDAQNLIGISIGGGAQYCP----CLYIVQVFDNTPAALDGTVAAGDEITGVNG 58
Query: 1363 EPLQGRTHAEAITIFKKTK 1381
++G+T E + ++ K
Sbjct: 59 RSIKGKTKVEVAKMIQEVK 77
>pdb|1QAV|B Chain B, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 115
Score = 31.2 bits (69), Expect = 4.1, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 1300 EPTLVRVS-FEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEIL 1358
+P ++ V F++ G LGF + V P + + + G A +SGL+ GD IL
Sbjct: 1 QPNVISVRLFKRKVG--GLGFLVKERVSKPP----VIISDLIRGGAAEQSGLIQAGDIIL 54
Query: 1359 LFNNEPLQGRTHAEAITIFK 1378
N+ PL ++ A+ + +
Sbjct: 55 AVNDRPLVDLSYDSALEVLR 74
>pdb|3QGL|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27 (Snx27)
In Complex With The Eseskv Peptide Corresponding To The
C-Terminal Tail Of Girk3
pdb|3QGL|B Chain B, Crystal Structure Of Pdz Domain Of Sorting Nexin 27 (Snx27)
In Complex With The Eseskv Peptide Corresponding To The
C-Terminal Tail Of Girk3
pdb|3QGL|C Chain C, Crystal Structure Of Pdz Domain Of Sorting Nexin 27 (Snx27)
In Complex With The Eseskv Peptide Corresponding To The
C-Terminal Tail Of Girk3
pdb|3QGL|D Chain D, Crystal Structure Of Pdz Domain Of Sorting Nexin 27 (Snx27)
In Complex With The Eseskv Peptide Corresponding To The
C-Terminal Tail Of Girk3
pdb|3QGL|E Chain E, Crystal Structure Of Pdz Domain Of Sorting Nexin 27 (Snx27)
In Complex With The Eseskv Peptide Corresponding To The
C-Terminal Tail Of Girk3
Length = 101
Score = 31.2 bits (69), Expect = 4.1, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 1301 PTLVR-VSFEKGPGKKSLGFSIVGG-VDSPKGEMGI---FVKTIFPHGQAAESGLLVEGD 1355
P +VR V E G G G GG + S GE+ V + P G A +G+ +GD
Sbjct: 7 PRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVR-KGD 65
Query: 1356 EILLFNNEPLQGRTHAEAITIFKKTKQGLVELVL 1389
IL N ++G TH + + + + ++ L+ VL
Sbjct: 66 RILEVNGVNVEGATHKQVVDLIRAGEKELILTVL 99
>pdb|2CS5|A Chain A, Solution Structure Of Pdz Domain Of Protein Tyrosine
Phosphatase, Non-Receptor Type 4
Length = 119
Score = 30.8 bits (68), Expect = 5.3, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Query: 1317 LGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGL--LVEGDEILLFNNEPLQGRTHAEAI 1374
GF++ GG D +M + V + P G A+ + L EGD+++L N + TH + +
Sbjct: 29 FGFNVKGGYDQ---KMPVIVSRVAP-GTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVV 84
Query: 1375 TIFKKT---KQGLVELVLQPN 1392
K + G + L+++PN
Sbjct: 85 LFIKASCERHSGELMLLVRPN 105
>pdb|3QDO|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27 (Snx27)
Fused To The Gly-Gly Linker Followed By C-Terminal
(Eseskv) Of Girk3
Length = 109
Score = 30.8 bits (68), Expect = 5.4, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 7/104 (6%)
Query: 1301 PTLVR-VSFEKGPGKKSLGFSIVGG-VDSPKGEMGI---FVKTIFPHGQAAESGLLVEGD 1355
P +VR V E G G G GG + S GE+ V + P G A +G+ +GD
Sbjct: 7 PRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVR-KGD 65
Query: 1356 EILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTTEADSK 1399
IL N ++G TH + + + + ++ L+ VL E++SK
Sbjct: 66 RILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSVG-GESESK 108
>pdb|1QAU|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 112
Score = 30.8 bits (68), Expect = 5.8, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 1317 LGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITI 1376
LGF + V P + + + G A +SGL+ GD IL N+ PL ++ A+ +
Sbjct: 15 LGFLVKERVSKPP----VIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEV 70
Query: 1377 FK 1378
+
Sbjct: 71 LR 72
>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK PEPTIDE
pdb|2HU2|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND RRTGAPPAL
Peptide
Length = 358
Score = 30.8 bits (68), Expect = 6.0, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 1107 HRSEDVKAYRSRTEDLKDCLSRTENVNASTNSTKEYRSLVDTASEVRLDEMGHVPDVLRN 1166
H SE + +D + + S ++ E R + A E+R G +PD L+N
Sbjct: 289 HESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMRE--EAAREIRRAITGRIPDSLKN 346
Query: 1167 CVRRD 1171
CV +D
Sbjct: 347 CVNKD 351
>pdb|2KRG|A Chain A, Solution Structure Of Human Sodium HYDROGEN EXCHANGE
Regulatory Factor 1(150-358)
Length = 216
Score = 30.8 bits (68), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 1302 TLVR---VSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEIL 1358
T++R + +KGP GF++ S K + G F++++ P A SGL + D I+
Sbjct: 6 TMLRPRLCTMKKGPS--GYGFNL----HSDKSKPGQFIRSVDPDSPAEASGLRAQ-DRIV 58
Query: 1359 LFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTTE 1395
N ++G+ H + ++ + LV+ T E
Sbjct: 59 EVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETDE 95
>pdb|3PDV|A Chain A, Structure Of The Pdlim2 Pdz Domain In Complex With The
C-Terminal 6- Peptide Extension Of Ns1
Length = 89
Score = 30.8 bits (68), Expect = 6.3, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 1313 GKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAE 1372
G GF I GG D I V + G+A ++ L GD I+ N E +G HAE
Sbjct: 9 GPAPWGFRITGGRDF---HTPIMVTKVAERGKAKDADLR-PGDIIVAINGESAEGMLHAE 64
Query: 1373 AITIFKKTKQGLVELVLQPNTTEAD 1397
A + +++ L L L +T E++
Sbjct: 65 AQSKIRQSPSPL-RLQLDRSTIESE 88
>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In Transcription
Corepression And Golgi Membrane Fission
Length = 358
Score = 30.8 bits (68), Expect = 6.3, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 1107 HRSEDVKAYRSRTEDLKDCLSRTENVNASTNSTKEYRSLVDTASEVRLDEMGHVPDVLRN 1166
H SE + +D + + S ++ E R + A E+R G +PD L+N
Sbjct: 289 HESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMRE--EAAREIRRAITGRIPDSLKN 346
Query: 1167 CVRRD 1171
CV +D
Sbjct: 347 CVNKD 351
>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H)
Binding And Dimerization
Length = 358
Score = 30.8 bits (68), Expect = 6.3, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 1107 HRSEDVKAYRSRTEDLKDCLSRTENVNASTNSTKEYRSLVDTASEVRLDEMGHVPDVLRN 1166
H SE + +D + + S ++ E R + A E+R G +PD L+N
Sbjct: 289 HESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMRE--EAAREIRRAITGRIPDSLKN 346
Query: 1167 CVRRD 1171
CV +D
Sbjct: 347 CVNKD 351
>pdb|2KQF|A Chain A, Solution Structure Of Mast205-Pdz Complexed With The
C-Terminus Of A Rabies Virus G Protein
pdb|2KYL|A Chain A, Solution Structure Of Mast2-Pdz Complexed With The
C-Terminus Of Pten
Length = 96
Score = 30.4 bits (67), Expect = 7.0, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 1343 GQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKT 1380
G A+E+GL +GD I N EP+ G H E + + K+
Sbjct: 47 GPASEAGLR-QGDLITHVNGEPVHGLVHTEVVELILKS 83
>pdb|3CYY|A Chain A, The Crystal Structure Of Zo-1 Pdz2 In Complex With The Cx43
Peptide
pdb|3CYY|B Chain B, The Crystal Structure Of Zo-1 Pdz2 In Complex With The Cx43
Peptide
Length = 92
Score = 30.4 bits (67), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 1334 IFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQ 1390
IFVK I AA G + EGD +L N + + +A T+ +++K G +++V+Q
Sbjct: 25 IFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSK-GKLKMVVQ 80
>pdb|2JWE|A Chain A, Solution Structure Of The Second Pdz Domain From Human
Zonula Occludens-1: A Dimeric Form With 3d Domain
Swapping
pdb|2JWE|B Chain B, Solution Structure Of The Second Pdz Domain From Human
Zonula Occludens-1: A Dimeric Form With 3d Domain
Swapping
Length = 88
Score = 30.4 bits (67), Expect = 8.0, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 1334 IFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNT 1393
IFVK I AA G + EGD +L N + + +A T+ +++K G +++V+Q +
Sbjct: 22 IFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSK-GKLKMVVQRDE 80
Query: 1394 TE 1395
E
Sbjct: 81 LE 82
>pdb|1LQ2|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X38|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X39|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
Length = 602
Score = 30.0 bits (66), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 1307 SFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPH 1342
F+K LG ++ G+D+ G+ ++ TIFPH
Sbjct: 76 GFQKACMSTRLGIPMIYGIDAVHGQNNVYGATIFPH 111
>pdb|1EX1|A Chain A, Beta-D-Glucan Exohydrolase From Barley
pdb|1IEX|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
4i,4iii,4v-S-Trithiocellohexaose
pdb|1IEW|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
2-Deoxy-2-Fluoro-Alpha-D-Glucoside
pdb|1IEV|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Cyclohexitol
pdb|1IEQ|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1
pdb|1J8V|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With 4'-Nitrophenyl
3i-Thiolaminaritrioside
Length = 605
Score = 30.0 bits (66), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 1307 SFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPH 1342
F+K LG ++ G+D+ G+ ++ TIFPH
Sbjct: 76 GFQKACMSTRLGIPMIYGIDAVHGQNNVYGATIFPH 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.127 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,799,994
Number of Sequences: 62578
Number of extensions: 1601183
Number of successful extensions: 2805
Number of sequences better than 100.0: 194
Number of HSP's better than 100.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 2607
Number of HSP's gapped (non-prelim): 205
length of query: 1454
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1343
effective length of database: 8,027,179
effective search space: 10780501397
effective search space used: 10780501397
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)