Query psy6070
Match_columns 1454
No_of_seqs 289 out of 1700
Neff 2.2
Searched_HMMs 46136
Date Fri Aug 16 16:53:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6070.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6070hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3209|consensus 99.6 4.4E-15 9.6E-20 172.8 11.5 149 1236-1392 789-982 (984)
2 PF00595 PDZ: PDZ domain (Also 99.4 1.7E-12 3.8E-17 112.9 11.2 81 1305-1390 1-81 (81)
3 KOG0609|consensus 99.3 7.2E-12 1.6E-16 144.0 11.7 124 1300-1442 120-243 (542)
4 KOG3550|consensus 99.3 9.2E-12 2E-16 126.8 7.9 84 1304-1393 92-175 (207)
5 KOG3209|consensus 99.2 5.3E-11 1.2E-15 139.6 10.2 147 1241-1395 690-840 (984)
6 KOG3551|consensus 99.0 3.5E-10 7.5E-15 126.9 7.0 86 1302-1392 84-169 (506)
7 KOG1892|consensus 99.0 2.2E-09 4.9E-14 128.6 11.9 94 1299-1396 930-1023(1629)
8 KOG3549|consensus 98.9 1.5E-09 3.2E-14 120.9 8.2 87 1301-1392 53-139 (505)
9 cd00992 PDZ_signaling PDZ doma 98.9 2E-08 4.3E-13 86.0 11.4 80 1304-1389 2-81 (82)
10 cd00136 PDZ PDZ domain, also c 98.8 2.5E-08 5.4E-13 83.8 9.6 68 1316-1389 2-69 (70)
11 smart00228 PDZ Domain present 98.8 6.7E-08 1.4E-12 82.2 12.0 82 1304-1392 3-84 (85)
12 KOG3580|consensus 98.7 2.7E-08 5.8E-13 116.0 8.9 92 1303-1398 9-103 (1027)
13 KOG3580|consensus 98.7 9.5E-08 2.1E-12 111.5 13.2 121 1300-1435 405-526 (1027)
14 KOG3553|consensus 98.6 1.3E-08 2.7E-13 98.9 1.2 74 1317-1393 37-117 (124)
15 KOG3571|consensus 98.6 1.5E-07 3.1E-12 108.8 8.4 94 1300-1395 247-342 (626)
16 KOG3606|consensus 98.5 9.5E-08 2.1E-12 104.5 6.3 92 1300-1392 156-253 (358)
17 cd00988 PDZ_CTP_protease PDZ d 98.5 7.1E-07 1.5E-11 77.6 9.7 71 1315-1392 2-72 (85)
18 KOG3651|consensus 98.5 4.7E-07 1E-11 100.3 8.9 87 1304-1395 6-92 (429)
19 KOG3605|consensus 98.3 3.9E-07 8.5E-12 107.4 4.1 126 1235-1388 683-810 (829)
20 PF13180 PDZ_2: PDZ domain; PD 98.3 4.2E-06 9.1E-11 73.9 9.6 72 1316-1394 2-74 (82)
21 KOG3605|consensus 98.1 3.1E-06 6.7E-11 100.2 6.1 91 1301-1394 644-736 (829)
22 KOG3552|consensus 98.1 3.4E-06 7.3E-11 102.4 6.1 78 1302-1392 55-132 (1298)
23 PLN00049 carboxyl-terminal pro 97.9 4.1E-05 8.8E-10 85.9 10.4 78 1315-1393 85-162 (389)
24 COG0793 Prc Periplasmic protea 97.9 2.9E-05 6.2E-10 88.3 9.1 74 1314-1393 99-172 (406)
25 cd00989 PDZ_metalloprotease PD 97.9 6.2E-05 1.3E-09 64.6 8.7 58 1333-1393 13-70 (79)
26 TIGR00225 prc C-terminal pepti 97.9 5.8E-05 1.2E-09 82.5 9.5 73 1315-1394 51-123 (334)
27 KOG3542|consensus 97.8 2.6E-05 5.5E-10 92.8 6.9 84 1303-1392 536-619 (1283)
28 cd00991 PDZ_archaeal_metallopr 97.8 0.00013 2.9E-09 64.6 8.7 59 1332-1393 10-69 (79)
29 cd00990 PDZ_glycyl_aminopeptid 97.8 0.00012 2.6E-09 63.4 8.2 66 1317-1393 3-68 (80)
30 PRK11186 carboxy-terminal prot 97.8 6.2E-05 1.4E-09 90.4 8.7 72 1315-1392 244-320 (667)
31 TIGR02037 degP_htrA_DO peripla 97.6 0.00019 4.1E-09 80.7 9.1 60 1332-1394 362-422 (428)
32 cd00987 PDZ_serine_protease PD 97.6 0.00033 7.1E-09 61.2 8.2 59 1332-1393 24-83 (90)
33 PRK10779 zinc metallopeptidase 97.6 0.00019 4E-09 81.9 8.5 59 1333-1394 222-280 (449)
34 cd00986 PDZ_LON_protease PDZ d 97.5 0.00056 1.2E-08 59.9 8.3 57 1333-1393 9-66 (79)
35 PRK10942 serine endoprotease; 97.4 0.00041 8.8E-09 80.2 8.8 59 1332-1394 408-466 (473)
36 PRK10139 serine endoprotease; 97.3 0.00043 9.3E-09 79.7 7.8 59 1332-1394 390-448 (455)
37 TIGR00054 RIP metalloprotease 97.3 0.00088 1.9E-08 76.2 9.6 59 1333-1394 204-262 (420)
38 KOG3938|consensus 97.1 0.001 2.3E-08 73.6 6.8 85 1301-1392 125-210 (334)
39 TIGR01713 typeII_sec_gspC gene 96.8 0.0046 1E-07 67.2 9.3 60 1332-1394 191-251 (259)
40 TIGR02037 degP_htrA_DO peripla 96.8 0.0041 8.8E-08 70.3 8.4 61 1332-1395 257-318 (428)
41 TIGR02038 protease_degS peripl 96.6 0.0055 1.2E-07 68.3 8.0 59 1332-1393 278-337 (351)
42 PRK10139 serine endoprotease; 96.6 0.007 1.5E-07 70.0 8.7 60 1332-1394 290-350 (455)
43 PRK10898 serine endoprotease; 96.5 0.0079 1.7E-07 67.3 8.5 59 1332-1393 279-338 (353)
44 PF04495 GRASP55_65: GRASP55/6 96.5 0.015 3.2E-07 58.6 9.5 90 1301-1393 9-102 (138)
45 PRK10942 serine endoprotease; 96.2 0.014 3.1E-07 67.8 8.7 61 1332-1395 311-372 (473)
46 TIGR02860 spore_IV_B stage IV 96.0 0.031 6.7E-07 64.8 9.7 69 1315-1394 96-172 (402)
47 KOG0606|consensus 95.8 0.02 4.3E-07 72.4 7.6 81 1306-1392 630-716 (1205)
48 PRK10779 zinc metallopeptidase 95.7 0.017 3.6E-07 66.4 6.2 59 1334-1395 128-187 (449)
49 KOG1738|consensus 95.5 0.039 8.5E-07 66.6 8.2 74 1315-1393 213-286 (638)
50 PF14685 Tricorn_PDZ: Tricorn 95.4 0.064 1.4E-06 51.0 7.8 71 1316-1394 2-81 (88)
51 KOG4371|consensus 94.9 0.05 1.1E-06 68.5 7.0 150 1235-1392 1178-1329(1332)
52 TIGR00054 RIP metalloprotease 94.6 0.064 1.4E-06 61.5 6.6 56 1333-1392 129-184 (420)
53 KOG0792|consensus 94.2 0.14 3.1E-06 64.9 8.6 78 1315-1392 716-813 (1144)
54 TIGR03279 cyano_FeS_chp putati 93.7 0.13 2.8E-06 60.5 6.6 50 1336-1391 2-51 (433)
55 COG3975 Predicted protease wit 92.9 0.09 2E-06 62.9 3.8 42 1315-1363 451-492 (558)
56 KOG3129|consensus 92.5 0.31 6.7E-06 53.4 6.9 62 1333-1395 140-202 (231)
57 COG0265 DegQ Trypsin-like seri 91.6 0.61 1.3E-05 51.6 8.1 59 1332-1393 270-329 (347)
58 KOG3532|consensus 90.3 0.74 1.6E-05 56.8 7.7 68 1315-1391 386-453 (1051)
59 PRK09681 putative type II secr 89.5 0.66 1.4E-05 52.1 6.0 46 1346-1394 221-267 (276)
60 KOG4371|consensus 88.4 0.61 1.3E-05 59.5 5.3 86 1300-1395 1145-1230(1332)
61 KOG1320|consensus 87.1 1.3 2.9E-05 52.8 6.9 61 1332-1395 398-459 (473)
62 COG3480 SdrC Predicted secrete 87.1 1.7 3.8E-05 50.1 7.5 59 1333-1395 131-190 (342)
63 KOG1421|consensus 82.5 2.5 5.4E-05 52.7 6.4 59 1333-1395 304-362 (955)
64 COG3031 PulC Type II secretory 81.7 5.3 0.00011 45.1 8.0 71 1304-1394 196-267 (275)
65 KOG4407|consensus 74.5 1.6 3.6E-05 56.8 1.9 61 1333-1395 144-204 (1973)
66 KOG4407|consensus 64.5 5.5 0.00012 52.4 3.4 83 1305-1391 48-152 (1973)
67 PF12812 PDZ_1: PDZ-like domai 63.1 21 0.00046 33.5 6.1 46 1333-1381 31-76 (78)
68 KOG3834|consensus 55.7 38 0.00082 41.0 7.8 87 1302-1392 77-167 (462)
69 COG0750 Predicted membrane-ass 51.3 43 0.00093 37.3 7.1 54 1335-1391 132-188 (375)
70 KOG3834|consensus 45.4 29 0.00064 41.8 4.9 62 1332-1395 15-76 (462)
71 KOG1703|consensus 38.6 36 0.00079 40.5 4.4 74 1316-1395 9-82 (479)
72 KOG1945|consensus 25.9 85 0.0019 37.4 4.5 85 1304-1391 101-188 (377)
73 KOG1421|consensus 21.3 1.7E+02 0.0037 37.7 5.9 47 1332-1382 862-908 (955)
74 PF11874 DUF3394: Domain of un 20.8 1.3E+02 0.0029 32.8 4.4 37 1317-1360 113-149 (183)
No 1
>KOG3209|consensus
Probab=99.59 E-value=4.4e-15 Score=172.82 Aligned_cols=149 Identities=26% Similarity=0.341 Sum_probs=118.8
Q ss_pred CCCCCCCCCCCCCceeccCCccCccCCCCCCchhhhcccCCCCcccccc------------------------ccccccc
Q psy6070 1236 NTNRASPNATNSNQALTNLTDSVSNTNQESPTSTELAKTSSGGFGLLHS------------------------LLASRSA 1291 (1454)
Q Consensus 1236 SGAARSPSsTqGDRLLeVNGEDVSNASQEEpSSVqLLKkSSgSVgLlhS------------------------iLASssv 1291 (1454)
|.+.|+..+..||+|+.|||.++.+++|... +.+++.++-++.+..- .......
T Consensus 789 SPAdRCgkLkVGDrilAVNG~sI~~lsHadi--v~LIKdaGlsVtLtIip~ee~~~~~~~~sa~~~s~~t~~~~~~q~~g 866 (984)
T KOG3209|consen 789 SPADRCGKLKVGDRILAVNGQSILNLSHADI--VSLIKDAGLSVTLTIIPPEEAGPPTSMTSAEKQSPFTQNGPYEQQYG 866 (984)
T ss_pred ChhHhhccccccceEEEecCeeeeccCchhH--HHHHHhcCceEEEEEcChhccCCCCCCcchhhcCcccccCCHhHccC
Confidence 3468899999999999999999999999998 7888877766665320 0000000
Q ss_pred cCCC--------C-------------CCCCCceEEEEEEeCCCCCcccEEEEeccCCCCCCccEEEEEeCCCChhhhcCC
Q psy6070 1292 FRSR--------P-------------QTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGL 1350 (1454)
Q Consensus 1292 LPSR--------P-------------rs~ppEIRTVrLqKGpG~EGLGFSIRGGkDQP~Gd~GIFISRVIPGGPADRDGR 1350 (1454)
++.. | ......+..|.|+|+. +||||+|+||... .|++||-++...|||.++||
T Consensus 867 lp~~~~s~~~~~pqpdt~~~~~~~~r~~qn~~~~~VelErG~--kGFGFSiRGGrey---nM~LfVLRlAeDGPA~rdGr 941 (984)
T KOG3209|consen 867 LPGPRPSVYEEHPQPDTFQGLSINDRMSQNGDLYTVELERGA--KGFGFSIRGGREY---NMDLFVLRLAEDGPAIRDGR 941 (984)
T ss_pred CCCCCccccccCCCCccccceeccccccccCCeeEEEeeccc--cccceEeeccccc---ccceEEEEeccCCCccccCc
Confidence 1110 0 1234567899999998 8999999999754 68999999999999999999
Q ss_pred CCCCCEEEeeCCeeCCCCCHHHHHHHHhcCCCCeEEEEEEcC
Q psy6070 1351 LVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPN 1392 (1454)
Q Consensus 1351 LRVGDRILEVNGISVEGLTHEEAVSLLKqSGqGSVsLVVrR~ 1392 (1454)
+++||+|++|||++..||||+.|+++||+.+ ..|.|++++.
T Consensus 942 m~VGDqi~eINGesTkgmtH~rAIelIk~gg-~~vll~Lr~g 982 (984)
T KOG3209|consen 942 MRVGDQITEINGESTKGMTHDRAIELIKQGG-RRVLLLLRRG 982 (984)
T ss_pred eeecceEEEecCcccCCCcHHHHHHHHHhCC-eEEEEEeccC
Confidence 9999999999999999999999999999986 5666666654
No 2
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.41 E-value=1.7e-12 Score=112.88 Aligned_cols=81 Identities=36% Similarity=0.661 Sum_probs=72.7
Q ss_pred EEEEEeCCCCCcccEEEEeccCCCCCCccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcCCCCe
Q psy6070 1305 RVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGL 1384 (1454)
Q Consensus 1305 TVrLqKGpG~EGLGFSIRGGkDQP~Gd~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqSGqGS 1384 (1454)
+|+|.|.. .++|||.+.++.+.. ..++||..|.+||+|+++| |++||+|++|||+++.+++|++++.+|+.++ +.
T Consensus 1 ~v~l~k~~-~~~lG~~l~~~~~~~--~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~-~~ 75 (81)
T PF00595_consen 1 QVTLEKSG-NGPLGFTLRGGSDND--EKGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSAS-NP 75 (81)
T ss_dssp EEEEEEST-TSBSSEEEEEESTSS--SEEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHST-SE
T ss_pred CEEEEeCC-CCCcCEEEEecCCCC--cCCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCCC-Cc
Confidence 47888864 489999999987642 2589999999999999999 9999999999999999999999999999997 69
Q ss_pred EEEEEE
Q psy6070 1385 VELVLQ 1390 (1454)
Q Consensus 1385 VsLVVr 1390 (1454)
|.|+|+
T Consensus 76 v~L~V~ 81 (81)
T PF00595_consen 76 VTLTVQ 81 (81)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999874
No 3
>KOG0609|consensus
Probab=99.31 E-value=7.2e-12 Score=144.02 Aligned_cols=124 Identities=27% Similarity=0.405 Sum_probs=109.0
Q ss_pred CCceEEEEEEeCCCCCcccEEEEeccCCCCCCccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhc
Q psy6070 1300 EPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKK 1379 (1454)
Q Consensus 1300 ppEIRTVrLqKGpG~EGLGFSIRGGkDQP~Gd~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKq 1379 (1454)
.+.++.|.|.|..+ .++|.+|+...+. .++|.+|+.||.|++.|.|++||+|++|||+++.+....++.++|+.
T Consensus 120 ~~~vriv~i~k~~~-eplG~Tik~~e~~-----~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~ 193 (542)
T KOG0609|consen 120 VEAVRIVRIVKNTG-EPLGATIRVEEDT-----KVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRN 193 (542)
T ss_pred cceeEEEEEeecCC-CccceEEEeccCC-----ccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHh
Confidence 45678999999964 8999999986542 59999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEEcCCCCCCccccCCCCCcccccccccccccCCCCCCCCCCccCCCCceeeecC
Q psy6070 1380 TKQGLVELVLQPNTTEADSKEGLNLQPRLIPRADFTTQIYHSYNPTQPRLIPRADFTTQIYHG 1442 (1454)
Q Consensus 1380 SGqGSVsLVVrR~kses~SeesL~~EPpL~PRALFSnQsS~SYDPSQDSLIPCKEGGFSIVGG 1442 (1454)
+. |.++++|..... ... ....++++++| +|||.+|.+|||+++|..|..|
T Consensus 194 ~~-G~itfkiiP~~~-~~~-----~~~~~~vra~F------dYdP~~D~~IPCkEagl~F~~G 243 (542)
T KOG0609|consen 194 SR-GSITFKIIPSYR-PPP-----QQQVVFVRALF------DYDPKEDDLIPCKEAGLPFQRG 243 (542)
T ss_pred CC-CcEEEEEccccc-CCC-----ceeeeeehhhc------CcCcccCCcccchhcCCccccc
Confidence 97 899999988765 221 12368999999 9999999999999999888776
No 4
>KOG3550|consensus
Probab=99.26 E-value=9.2e-12 Score=126.79 Aligned_cols=84 Identities=31% Similarity=0.558 Sum_probs=77.5
Q ss_pred EEEEEEeCCCCCcccEEEEeccCCCCCCccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcCCCC
Q psy6070 1304 VRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQG 1383 (1454)
Q Consensus 1304 RTVrLqKGpG~EGLGFSIRGGkDQP~Gd~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqSGqG 1383 (1454)
+.|.|-|.. +||||.|.||+++. .+|||++|+|||.|++-|-|+.||+|++|||++++|-.|+.|+++||.+. +
T Consensus 92 rvvelpktd--eglgfnvmggkeqn---spiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~-g 165 (207)
T KOG3550|consen 92 RVVELPKTD--EGLGFNVMGGKEQN---SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAV-G 165 (207)
T ss_pred ceeecCccc--cccceeeccCcccC---CceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhc-C
Confidence 578898887 79999999999874 49999999999999999999999999999999999999999999999996 8
Q ss_pred eEEEEEEcCC
Q psy6070 1384 LVELVLQPNT 1393 (1454)
Q Consensus 1384 SVsLVVrR~k 1393 (1454)
.|.|+|+-..
T Consensus 166 svklvvrytp 175 (207)
T KOG3550|consen 166 SVKLVVRYTP 175 (207)
T ss_pred cEEEEEecCh
Confidence 9999997654
No 5
>KOG3209|consensus
Probab=99.19 E-value=5.3e-11 Score=139.62 Aligned_cols=147 Identities=18% Similarity=0.266 Sum_probs=112.5
Q ss_pred CCCCCCCCceeccCCccCccCCCCCCchhhhcccC--CCCccccccccccccccCCCCC--CCCCceEEEEEEeCCCCCc
Q psy6070 1241 SPNATNSNQALTNLTDSVSNTNQESPTSTELAKTS--SGGFGLLHSLLASRSAFRSRPQ--TCEPTLVRVSFEKGPGKKS 1316 (1454)
Q Consensus 1241 SPSsTqGDRLLeVNGEDVSNASQEEpSSVqLLKkS--SgSVgLlhSiLASssvLPSRPr--s~ppEIRTVrLqKGpG~EG 1316 (1454)
-..+..||-|..+.|..|.+.+|..+ +.++..+ .+++.+.+....-.-.....|+ ..+-....|.|++.. .+|
T Consensus 690 DGRL~~gDElv~iDG~pV~GksH~~v--v~Lm~~AArnghV~LtVRRkv~~~~~~rsp~~s~~~~~~yDV~lhR~E-NeG 766 (984)
T KOG3209|consen 690 DGRLREGDELVCIDGIPVEGKSHSEV--VDLMEAAARNGHVNLTVRRKVRTGPARRSPRNSAAPSGPYDVVLHRKE-NEG 766 (984)
T ss_pred cCcccCCCeEEEecCeeccCccHHHH--HHHHHHHHhcCceEEEEeeeeeeccccCCcccccCCCCCeeeEEeccc-CCc
Confidence 34677899999999999999999999 6666533 3666665532100000111121 122335789999887 599
Q ss_pred ccEEEEeccCCCCCCccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcCCCCeEEEEEEcCCCC
Q psy6070 1317 LGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTTE 1395 (1454)
Q Consensus 1317 LGFSIRGGkDQP~Gd~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqSGqGSVsLVVrR~kse 1395 (1454)
|||.|......+. --|-+|++|+||++||+|++||+|++|||+++.+++|.+.|.+||.++ -+|+|+|......
T Consensus 767 FGFVi~sS~~kp~----sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaG-lsVtLtIip~ee~ 840 (984)
T KOG3209|consen 767 FGFVIMSSQNKPE----SGIGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAG-LSVTLTIIPPEEA 840 (984)
T ss_pred eeEEEEecccCCC----CCccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhcC-ceEEEEEcChhcc
Confidence 9999988765432 239999999999999999999999999999999999999999999998 8999999887654
No 6
>KOG3551|consensus
Probab=99.02 E-value=3.5e-10 Score=126.94 Aligned_cols=86 Identities=35% Similarity=0.442 Sum_probs=78.0
Q ss_pred ceEEEEEEeCCCCCcccEEEEeccCCCCCCccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcCC
Q psy6070 1302 TLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTK 1381 (1454)
Q Consensus 1302 EIRTVrLqKGpG~EGLGFSIRGGkDQP~Gd~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqSG 1381 (1454)
.-+.|++.|... +||||+|+||.+. +|+|.|++|.+|-+|++.+.|..||.|+.|||.++...||+|||+.||.++
T Consensus 84 ~~R~V~V~K~d~-gGLGISIKGGreN---kMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraG 159 (506)
T KOG3551|consen 84 AERRVRVVKQDA-GGLGISIKGGREN---KMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAG 159 (506)
T ss_pred ccceeEEEEecC-CcceEEeecCccc---CCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhC
Confidence 347899999874 8999999999876 689999999999999999999999999999999999999999999999998
Q ss_pred CCeEEEEEEcC
Q psy6070 1382 QGLVELVLQPN 1392 (1454)
Q Consensus 1382 qGSVsLVVrR~ 1392 (1454)
..|.|.|+-.
T Consensus 160 -keV~levKy~ 169 (506)
T KOG3551|consen 160 -KEVLLEVKYM 169 (506)
T ss_pred -ceeeeeeeee
Confidence 6887777543
No 7
>KOG1892|consensus
Probab=98.98 E-value=2.2e-09 Score=128.59 Aligned_cols=94 Identities=27% Similarity=0.482 Sum_probs=84.1
Q ss_pred CCCceEEEEEEeCCCCCcccEEEEeccCCCCCCccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHh
Q psy6070 1299 CEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFK 1378 (1454)
Q Consensus 1299 ~ppEIRTVrLqKGpG~EGLGFSIRGGkDQP~Gd~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLK 1378 (1454)
.++++.+|+|.|.. |+|++|+...+.+..++||||+.|.+||+|+.+|||..||+||.|||+++.|++.+.|+++|.
T Consensus 930 ~~pei~~vtL~Knn---GmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmt 1006 (1629)
T KOG1892|consen 930 KEPEIITVTLKKNN---GMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMT 1006 (1629)
T ss_pred cCCceEEEEEeccC---CceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHh
Confidence 45778999999984 789998876665566789999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEEEcCCCCC
Q psy6070 1379 KTKQGLVELVLQPNTTEA 1396 (1454)
Q Consensus 1379 qSGqGSVsLVVrR~kses 1396 (1454)
..+ ..|.|.|.+.....
T Consensus 1007 rtg-~vV~leVaKqgAiy 1023 (1629)
T KOG1892|consen 1007 RTG-NVVHLEVAKQGAIY 1023 (1629)
T ss_pred ccC-CeEEEehhhhhhHH
Confidence 997 89999998876553
No 8
>KOG3549|consensus
Probab=98.94 E-value=1.5e-09 Score=120.93 Aligned_cols=87 Identities=24% Similarity=0.386 Sum_probs=78.5
Q ss_pred CceEEEEEEeCCCCCcccEEEEeccCCCCCCccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcC
Q psy6070 1301 PTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKT 1380 (1454)
Q Consensus 1301 pEIRTVrLqKGpG~EGLGFSIRGGkDQP~Gd~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqS 1380 (1454)
..-++|+|.+.+ -+|||++|+||.+. ..||+|++|...-+|+..|.|.+||.|+.|||+.+..++|+|||.+||++
T Consensus 53 s~eRtVtirRQ~-vGGlGLSIKGGaEH---n~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNA 128 (505)
T KOG3549|consen 53 SKERTVTIRRQK-VGGLGLSIKGGAEH---NLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNA 128 (505)
T ss_pred CCceeEEEEeee-cCcceeeecccccc---CccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhc
Confidence 345788888776 47999999999987 45999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEEcC
Q psy6070 1381 KQGLVELVLQPN 1392 (1454)
Q Consensus 1381 GqGSVsLVVrR~ 1392 (1454)
| +.|+|+|..-
T Consensus 129 G-deVtlTV~~l 139 (505)
T KOG3549|consen 129 G-DEVTLTVKHL 139 (505)
T ss_pred C-CEEEEEeHhh
Confidence 8 8999999654
No 9
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=98.89 E-value=2e-08 Score=85.97 Aligned_cols=80 Identities=41% Similarity=0.635 Sum_probs=68.8
Q ss_pred EEEEEEeCCCCCcccEEEEeccCCCCCCccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcCCCC
Q psy6070 1304 VRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQG 1383 (1454)
Q Consensus 1304 RTVrLqKGpG~EGLGFSIRGGkDQP~Gd~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqSGqG 1383 (1454)
+.+.|.+.. ..+|||.+.++... ..+++|..|.+|++|++.| |++||+|++|||..+..++++++..+|+... .
T Consensus 2 ~~~~l~~~~-~~~~G~~~~~~~~~---~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~~~l~~~~-~ 75 (82)
T cd00992 2 RTVTLRKDP-GGGLGFSLRGGKDS---GGGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGLTHEEAVELLKNSG-D 75 (82)
T ss_pred EEEEEEeCC-CCCcCEEEeCcccC---CCCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCccCHHHHHHHHHhCC-C
Confidence 567888874 37899999987543 2479999999999999988 9999999999999999999999999999976 4
Q ss_pred eEEEEE
Q psy6070 1384 LVELVL 1389 (1454)
Q Consensus 1384 SVsLVV 1389 (1454)
.+.|+|
T Consensus 76 ~v~l~v 81 (82)
T cd00992 76 EVTLTV 81 (82)
T ss_pred eEEEEE
Confidence 777765
No 10
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.83 E-value=2.5e-08 Score=83.84 Aligned_cols=68 Identities=34% Similarity=0.511 Sum_probs=61.3
Q ss_pred cccEEEEeccCCCCCCccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcCCCCeEEEEE
Q psy6070 1316 SLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVL 1389 (1454)
Q Consensus 1316 GLGFSIRGGkDQP~Gd~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqSGqGSVsLVV 1389 (1454)
+|||.+.+..+ .+++|..|.+++||+.+| |++||+|++|||..+.+++++++..+|+...+..|.|+|
T Consensus 2 ~~G~~~~~~~~-----~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 2 GLGFSIRGGTE-----GGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CccEEEecCCC-----CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 68999988754 279999999999999988 999999999999999999999999999998656788876
No 11
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.82 E-value=6.7e-08 Score=82.24 Aligned_cols=82 Identities=41% Similarity=0.630 Sum_probs=70.6
Q ss_pred EEEEEEeCCCCCcccEEEEeccCCCCCCccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcCCCC
Q psy6070 1304 VRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQG 1383 (1454)
Q Consensus 1304 RTVrLqKGpG~EGLGFSIRGGkDQP~Gd~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqSGqG 1383 (1454)
..+.+.+.. ..|||.+..+... ..+++|..|.++++|+++| |++||+|++|||+.+.++++.+++.+++..+ .
T Consensus 3 ~~~~~~~~~--~~~G~~~~~~~~~---~~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~~-~ 75 (85)
T smart00228 3 RLVELEKGG--GGLGFSLVGGKDE---GGGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKAG-G 75 (85)
T ss_pred EEEEEEECC--CcccEEEECCCCC---CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC-C
Confidence 467777776 5899999876432 1489999999999999999 9999999999999999999999999999885 5
Q ss_pred eEEEEEEcC
Q psy6070 1384 LVELVLQPN 1392 (1454)
Q Consensus 1384 SVsLVVrR~ 1392 (1454)
.+.|++.|.
T Consensus 76 ~~~l~i~r~ 84 (85)
T smart00228 76 KVTLTVLRG 84 (85)
T ss_pred eEEEEEEeC
Confidence 888888774
No 12
>KOG3580|consensus
Probab=98.72 E-value=2.7e-08 Score=115.98 Aligned_cols=92 Identities=27% Similarity=0.527 Sum_probs=81.6
Q ss_pred eEEEEEEeCCCCCcccEEEEeccCCCC---CCccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhc
Q psy6070 1303 LVRVSFEKGPGKKSLGFSIVGGVDSPK---GEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKK 1379 (1454)
Q Consensus 1303 IRTVrLqKGpG~EGLGFSIRGGkDQP~---Gd~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKq 1379 (1454)
-.+|+|.|+++ .||||.|.||.+.+. |..-|+|+.|.+|||| .|+|+.||+|+-|||+++++.+|.-||+.|+.
T Consensus 9 QhTvTL~kdp~-rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPA--eG~LQenDrvvMVNGvsMenv~haFAvQqLrk 85 (1027)
T KOG3580|consen 9 QHTVTLQKDPK-RGFGIAISGGRDNPHFENGETSIVISDVLPGGPA--EGLLQENDRVVMVNGVSMENVLHAFAVQQLRK 85 (1027)
T ss_pred hheeeeecCCC-CcceeEeecCCCCCCccCCceeEEEeeccCCCCc--ccccccCCeEEEEcCcchhhhHHHHHHHHHHh
Confidence 46899999994 899999999999865 4567999999999999 78999999999999999999999999999999
Q ss_pred CCCCeEEEEEEcCCCCCCc
Q psy6070 1380 TKQGLVELVLQPNTTEADS 1398 (1454)
Q Consensus 1380 SGqGSVsLVVrR~kses~S 1398 (1454)
++ ....++|+|+......
T Consensus 86 sg-K~A~ItvkRprkvqvp 103 (1027)
T KOG3580|consen 86 SG-KVAAITVKRPRKVQVP 103 (1027)
T ss_pred hc-cceeEEecccceeecc
Confidence 97 6778888887655443
No 13
>KOG3580|consensus
Probab=98.72 E-value=9.5e-08 Score=111.54 Aligned_cols=121 Identities=25% Similarity=0.363 Sum_probs=96.5
Q ss_pred CCceEEEEEEeCCCCCcccEEEEeccCCCCCCccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhc
Q psy6070 1300 EPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKK 1379 (1454)
Q Consensus 1300 ppEIRTVrLqKGpG~EGLGFSIRGGkDQP~Gd~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKq 1379 (1454)
.+..+.|++.|+. .+|+.+.||.+- ||||+.|..|+||+..| |+.||+||.||.+++.+++.++||.+|-.
T Consensus 405 sP~tk~VrF~KGd---SvGLRLAGGNDV-----GIFVaGvqegspA~~eG-lqEGDQIL~VN~vdF~nl~REeAVlfLL~ 475 (1027)
T KOG3580|consen 405 SPNTKMVRFKKGD---SVGLRLAGGNDV-----GIFVAGVQEGSPAEQEG-LQEGDQILKVNTVDFRNLVREEAVLFLLE 475 (1027)
T ss_pred CCCceeEEeecCC---eeeeEeccCCce-----eEEEeecccCCchhhcc-ccccceeEEeccccchhhhHHHHHHHHhc
Confidence 3567899999976 799999999875 99999999999999999 99999999999999999999999999988
Q ss_pred CCC-CeEEEEEEcCCCCCCccccCCCCCcccccccccccccCCCCCCCCCCccCCCC
Q psy6070 1380 TKQ-GLVELVLQPNTTEADSKEGLNLQPRLIPRADFTTQIYHSYNPTQPRLIPRADF 1435 (1454)
Q Consensus 1380 SGq-GSVsLVVrR~kses~SeesL~~EPpL~PRALFSnQsS~SYDPSQDSLIPCKEG 1435 (1454)
... ..|+|+.+++....-..........+|.+.+| .|.+..+..+-...+
T Consensus 476 lPkGEevtilaQ~k~Dvyr~iv~s~vGDSFyIRtHF------E~Eke~P~gL~FtrG 526 (1027)
T KOG3580|consen 476 LPKGEEVTILAQSKADVYRDIVASGVGDSFYIRTHF------ECEKETPQGLAFTRG 526 (1027)
T ss_pred CCCCcEEeehhhhhhHHHHHHHhccCCceeEEeeee------eecCCCCcccccccc
Confidence 764 46777777766554333334456788899999 666655444444443
No 14
>KOG3553|consensus
Probab=98.59 E-value=1.3e-08 Score=98.88 Aligned_cols=74 Identities=28% Similarity=0.449 Sum_probs=65.8
Q ss_pred ccEEEEeccCCCC-------CCccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcCCCCeEEEEE
Q psy6070 1317 LGFSIVGGVDSPK-------GEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVL 1389 (1454)
Q Consensus 1317 LGFSIRGGkDQP~-------Gd~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqSGqGSVsLVV 1389 (1454)
+||.|-||.++.. .+.||||.+|.+||||+.+| |+.+|.|++|||.++.=+||++|+..|+... .+.|+|
T Consensus 37 ~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG~DfTMvTHd~Avk~i~k~~--vl~mLV 113 (124)
T KOG3553|consen 37 LGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG-LRIHDKILQVNGWDFTMVTHDQAVKRITKEE--VLRMLV 113 (124)
T ss_pred EEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhc-ceecceEEEecCceeEEEEhHHHHHHhhHhH--HHHHHH
Confidence 7999999998832 35699999999999999999 9999999999999999999999999999964 777777
Q ss_pred EcCC
Q psy6070 1390 QPNT 1393 (1454)
Q Consensus 1390 rR~k 1393 (1454)
.|..
T Consensus 114 aR~~ 117 (124)
T KOG3553|consen 114 ARQS 117 (124)
T ss_pred Hhhc
Confidence 7654
No 15
>KOG3571|consensus
Probab=98.55 E-value=1.5e-07 Score=108.83 Aligned_cols=94 Identities=24% Similarity=0.443 Sum_probs=79.8
Q ss_pred CCceEEEEEEeCCCCCcccEEEEeccCCCCCCccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhc
Q psy6070 1300 EPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKK 1379 (1454)
Q Consensus 1300 ppEIRTVrLqKGpG~EGLGFSIRGGkDQP~Gd~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKq 1379 (1454)
...+++|+|--.. ..-|||+|.|.... .|+.||||..|++||+.+.+||+.+||.||+||.+++++++.+|||.+||.
T Consensus 247 slnIITV~LnMe~-vnfLGiSivgqsn~-rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLRE 324 (626)
T KOG3571|consen 247 SLNIITVTLNMET-VNFLGISIVGQSNA-RGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLRE 324 (626)
T ss_pred ceeEEEEEecccc-cccceeEeecccCc-CCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHH
Confidence 4567888886554 35699999996544 457799999999999999999999999999999999999999999999998
Q ss_pred CC--CCeEEEEEEcCCCC
Q psy6070 1380 TK--QGLVELVLQPNTTE 1395 (1454)
Q Consensus 1380 SG--qGSVsLVVrR~kse 1395 (1454)
+- .+.+.|+|.+..+.
T Consensus 325 aV~~~gPi~ltvAk~~DP 342 (626)
T KOG3571|consen 325 AVSRPGPIKLTVAKCWDP 342 (626)
T ss_pred HhccCCCeEEEEeeccCC
Confidence 64 35799999887654
No 16
>KOG3606|consensus
Probab=98.54 E-value=9.5e-08 Score=104.46 Aligned_cols=92 Identities=28% Similarity=0.437 Sum_probs=77.9
Q ss_pred CCceEEEEEEeCCCCCcccEEEEeccCCC---C---CCccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHH
Q psy6070 1300 EPTLVRVSFEKGPGKKSLGFSIVGGVDSP---K---GEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEA 1373 (1454)
Q Consensus 1300 ppEIRTVrLqKGpG~EGLGFSIRGGkDQP---~---Gd~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEA 1373 (1454)
++.-+.|+|.|-...++|||-|+.|..-. . .-.||||+++.+||.|+-.|.|.+.|+||+|||+.|.|+|.+||
T Consensus 156 PEtHRRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQV 235 (358)
T KOG3606|consen 156 PETHRRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQV 235 (358)
T ss_pred chhhhheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHH
Confidence 44457899998877789999999876431 1 23589999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCeEEEEEEcC
Q psy6070 1374 ITIFKKTKQGLVELVLQPN 1392 (1454)
Q Consensus 1374 VSLLKqSGqGSVsLVVrR~ 1392 (1454)
.+||-+.. ..+.++|++.
T Consensus 236 TDMMvANs-hNLIiTVkPA 253 (358)
T KOG3606|consen 236 TDMMVANS-HNLIITVKPA 253 (358)
T ss_pred HHHHhhcc-cceEEEeccc
Confidence 99998876 6777777654
No 17
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.51 E-value=7.1e-07 Score=77.60 Aligned_cols=71 Identities=21% Similarity=0.459 Sum_probs=61.8
Q ss_pred CcccEEEEeccCCCCCCccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcCCCCeEEEEEEcC
Q psy6070 1315 KSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPN 1392 (1454)
Q Consensus 1315 EGLGFSIRGGkDQP~Gd~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqSGqGSVsLVVrR~ 1392 (1454)
.+||+.+.... .+++|..|.+++||++.| |++||+|++|||+.+.+.+++++..+++...+..+.|.+.|.
T Consensus 2 ~~lG~~~~~~~------~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~ 72 (85)
T cd00988 2 GGIGLELKYDD------GGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG 72 (85)
T ss_pred eEEEEEEEEcC------CeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence 47899987532 379999999999999999 999999999999999999999999999875446889999876
No 18
>KOG3651|consensus
Probab=98.46 E-value=4.7e-07 Score=100.27 Aligned_cols=87 Identities=24% Similarity=0.382 Sum_probs=77.9
Q ss_pred EEEEEEeCCCCCcccEEEEeccCCCCCCccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcCCCC
Q psy6070 1304 VRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQG 1383 (1454)
Q Consensus 1304 RTVrLqKGpG~EGLGFSIRGGkDQP~Gd~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqSGqG 1383 (1454)
..|.|.|+. ..-+|++|.||...++ .+||.+|..+.||+++|+++.||+|++|||+++.|.|.-+|..+|+.+. +
T Consensus 6 ~~v~ltKD~-~nliGISIGGGapyCP---ClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~-~ 80 (429)
T KOG3651|consen 6 ETVELTKDE-KNLIGISIGGGAPYCP---CLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSL-N 80 (429)
T ss_pred CcEEEeecc-ccceeEEecCCCCcCC---eEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhc-c
Confidence 478999997 3668999999987765 7999999999999999999999999999999999999999999999997 8
Q ss_pred eEEEEEEcCCCC
Q psy6070 1384 LVELVLQPNTTE 1395 (1454)
Q Consensus 1384 SVsLVVrR~kse 1395 (1454)
.|.+..-+-...
T Consensus 81 eV~IhyNKL~ad 92 (429)
T KOG3651|consen 81 EVKIHYNKLEAD 92 (429)
T ss_pred ceEEEehhcccC
Confidence 999988765444
No 19
>KOG3605|consensus
Probab=98.30 E-value=3.9e-07 Score=107.44 Aligned_cols=126 Identities=17% Similarity=0.291 Sum_probs=94.1
Q ss_pred CCCCCCCCCCCCCCceeccCCccCccCCCCCCchhhhcc--cCCCCccccccccccccccCCCCCCCCCceEEEEEEeCC
Q psy6070 1235 SNTNRASPNATNSNQALTNLTDSVSNTNQESPTSTELAK--TSSGGFGLLHSLLASRSAFRSRPQTCEPTLVRVSFEKGP 1312 (1454)
Q Consensus 1235 SSGAARSPSsTqGDRLLeVNGEDVSNASQEEpSSVqLLK--kSSgSVgLlhSiLASssvLPSRPrs~ppEIRTVrLqKGp 1312 (1454)
...++|+-.++.||+|..+||..+.++.-... ...++ +.-..+.+.. .+ | +.+.+|.|.|-.
T Consensus 683 ~GpAarsgkLnIGDQiiaING~SLVGLPLstc--Qs~Ik~~KnQT~Vklti--------V~-----c-pPV~~V~I~RPd 746 (829)
T KOG3605|consen 683 GGPAARSGKLNIGDQIMSINGTSLVGLPLSTC--QSIIKGLKNQTAVKLNI--------VS-----C-PPVTTVLIRRPD 746 (829)
T ss_pred CChhhhcCCccccceeEeecCceeccccHHHH--HHHHhcccccceEEEEE--------ec-----C-CCceEEEeeccc
Confidence 34468999999999999999999887733222 11222 1112222321 11 1 224678887776
Q ss_pred CCCcccEEEEeccCCCCCCccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcCCCCeEEEE
Q psy6070 1313 GKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELV 1388 (1454)
Q Consensus 1313 G~EGLGFSIRGGkDQP~Gd~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqSGqGSVsLV 1388 (1454)
-...|||+|..| +|..+..||.|+|.| +|+|.+|++|||++|....|+.+|.+|..+- +.|.|+
T Consensus 747 ~kyQLGFSVQNG----------iICSLlRGGIAERGG-VRVGHRIIEINgQSVVA~pHekIV~lLs~aV-GEIhMK 810 (829)
T KOG3605|consen 747 LRYQLGFSVQNG----------IICSLLRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVQLLSNAV-GEIHMK 810 (829)
T ss_pred chhhccceeeCc----------EeehhhcccchhccC-ceeeeeEEEECCceEEeccHHHHHHHHHHhh-hhhhhh
Confidence 667899999886 678899999999999 9999999999999999999999999999885 666654
No 20
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=98.30 E-value=4.2e-06 Score=73.94 Aligned_cols=72 Identities=26% Similarity=0.453 Sum_probs=57.9
Q ss_pred cccEEEEeccCCCCCCccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHh-cCCCCeEEEEEEcCCC
Q psy6070 1316 SLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFK-KTKQGLVELVLQPNTT 1394 (1454)
Q Consensus 1316 GLGFSIRGGkDQP~Gd~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLK-qSGqGSVsLVVrR~ks 1394 (1454)
.||+.+....+ ..+++|..|.++|||+++| |+.||+|++|||..+. +..+....|. ...+..|.|+|.|...
T Consensus 2 ~lGv~~~~~~~----~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~~~~~g~~v~l~v~R~g~ 74 (82)
T PF13180_consen 2 GLGVTVQNLSD----TGGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPVN--SSEDLVNILSKGKPGDTVTLTVLRDGE 74 (82)
T ss_dssp E-SEEEEECSC----SSSEEEEEESTTSHHHHTT-S-TTEEEEEETTEESS--SHHHHHHHHHCSSTTSEEEEEEEETTE
T ss_pred EECeEEEEccC----CCeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEcC--CHHHHHHHHHhCCCCCEEEEEEEECCE
Confidence 58888887643 2389999999999999999 9999999999999995 6678878884 3335789999999654
No 21
>KOG3605|consensus
Probab=98.12 E-value=3.1e-06 Score=100.21 Aligned_cols=91 Identities=31% Similarity=0.358 Sum_probs=76.7
Q ss_pred CceEEEEEEeCCCCCcccEEEEe-ccCCCCCCccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhc
Q psy6070 1301 PTLVRVSFEKGPGKKSLGFSIVG-GVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKK 1379 (1454)
Q Consensus 1301 pEIRTVrLqKGpG~EGLGFSIRG-GkDQP~Gd~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKq 1379 (1454)
+..+.|.|.|..| +.||+.|+. |++.-. .-++|..++.||||+++|+|..||+|++|||.++.|+.+..+..+||.
T Consensus 644 E~qKEVvv~K~kG-EiLGVViVESGWGSmL--PTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~ 720 (829)
T KOG3605|consen 644 ENQKEVVLEKHKG-EILGVVIVESGWGSIL--PTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKG 720 (829)
T ss_pred cccceeeeecccC-ceeeEEEEecCccccc--hHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhc
Confidence 4457899999885 899999875 665522 247999999999999999999999999999999999999999999999
Q ss_pred CC-CCeEEEEEEcCCC
Q psy6070 1380 TK-QGLVELVLQPNTT 1394 (1454)
Q Consensus 1380 SG-qGSVsLVVrR~ks 1394 (1454)
.+ +..|.|.|.+-..
T Consensus 721 ~KnQT~VkltiV~cpP 736 (829)
T KOG3605|consen 721 LKNQTAVKLNIVSCPP 736 (829)
T ss_pred ccccceEEEEEecCCC
Confidence 87 3468888877543
No 22
>KOG3552|consensus
Probab=98.10 E-value=3.4e-06 Score=102.39 Aligned_cols=78 Identities=27% Similarity=0.468 Sum_probs=69.6
Q ss_pred ceEEEEEEeCCCCCcccEEEEeccCCCCCCccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcCC
Q psy6070 1302 TLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTK 1381 (1454)
Q Consensus 1302 EIRTVrLqKGpG~EGLGFSIRGGkDQP~Gd~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqSG 1381 (1454)
+.+.|.+++.. .|||-++.|. +++|..|.+|||+ -|+|.+||+||.|||+++.....+.|++++|.+.
T Consensus 55 ~pr~vq~~r~~---~lGFgfvagr-------PviVr~VT~GGps--~GKL~PGDQIl~vN~Epv~daprervIdlvRace 122 (1298)
T KOG3552|consen 55 EPRQVQLQRNA---SLGFGFVAGR-------PVIVRFVTEGGPS--IGKLQPGDQILAVNGEPVKDAPRERVIDLVRACE 122 (1298)
T ss_pred cchhhhhhccc---cccceeecCC-------ceEEEEecCCCCc--cccccCCCeEEEecCcccccccHHHHHHHHHHHh
Confidence 36889999987 4777666662 7999999999999 6899999999999999999999999999999996
Q ss_pred CCeEEEEEEcC
Q psy6070 1382 QGLVELVLQPN 1392 (1454)
Q Consensus 1382 qGSVsLVVrR~ 1392 (1454)
..|.|+|+++
T Consensus 123 -~sv~ltV~qP 132 (1298)
T KOG3552|consen 123 -SSVNLTVCQP 132 (1298)
T ss_pred -hhcceEEecc
Confidence 8999999886
No 23
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=97.94 E-value=4.1e-05 Score=85.92 Aligned_cols=78 Identities=26% Similarity=0.334 Sum_probs=63.1
Q ss_pred CcccEEEEeccCCCCCCccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcCCCCeEEEEEEcCC
Q psy6070 1315 KSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNT 1393 (1454)
Q Consensus 1315 EGLGFSIRGGkDQP~Gd~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqSGqGSVsLVVrR~k 1393 (1454)
.|+|+.+.-..+......+++|..|.+||||+++| |+.||+|++|||+++.+++..++..+|+...+..|.|+|.|..
T Consensus 85 ~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~g 162 (389)
T PLN00049 85 TGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGP 162 (389)
T ss_pred eEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEECC
Confidence 57888886432210011269999999999999999 9999999999999999999999999998765568999998754
No 24
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=97.93 E-value=2.9e-05 Score=88.30 Aligned_cols=74 Identities=19% Similarity=0.245 Sum_probs=67.6
Q ss_pred CCcccEEEEeccCCCCCCccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcCCCCeEEEEEEcCC
Q psy6070 1314 KKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNT 1393 (1454)
Q Consensus 1314 ~EGLGFSIRGGkDQP~Gd~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqSGqGSVsLVVrR~k 1393 (1454)
..|+|+.+.-... .++.|..+++|+||+++| |++||.|+.|||.++.+++.++|+..|+...+..|+|+|.|..
T Consensus 99 ~~GiG~~i~~~~~-----~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~~ 172 (406)
T COG0793 99 FGGIGIELQMEDI-----GGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRAG 172 (406)
T ss_pred ccceeEEEEEecC-----CCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEcC
Confidence 4789999988542 279999999999999999 9999999999999999999999999999998789999999973
No 25
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.91 E-value=6.2e-05 Score=64.61 Aligned_cols=58 Identities=21% Similarity=0.387 Sum_probs=50.2
Q ss_pred cEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcCCCCeEEEEEEcCC
Q psy6070 1333 GIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNT 1393 (1454)
Q Consensus 1333 GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqSGqGSVsLVVrR~k 1393 (1454)
+++|..|.++++|++.| |++||+|++|||..+. +.+++..+|+...+..+.|++.|..
T Consensus 13 ~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~--~~~~~~~~l~~~~~~~~~l~v~r~~ 70 (79)
T cd00989 13 EPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIK--SWEDLVDAVQENPGKPLTLTVERNG 70 (79)
T ss_pred CcEEEeECCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHHCCCceEEEEEEECC
Confidence 58999999999999999 9999999999999998 5678888887764457888887754
No 26
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=97.85 E-value=5.8e-05 Score=82.46 Aligned_cols=73 Identities=19% Similarity=0.325 Sum_probs=62.4
Q ss_pred CcccEEEEeccCCCCCCccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcCCCCeEEEEEEcCCC
Q psy6070 1315 KSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTT 1394 (1454)
Q Consensus 1315 EGLGFSIRGGkDQP~Gd~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqSGqGSVsLVVrR~ks 1394 (1454)
.++|+.+.... .+++|..|.+||||+++| |+.||+|++|||..+.+++..++..+|+...+..+.|+|.|...
T Consensus 51 ~~lG~~~~~~~------~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~ 123 (334)
T TIGR00225 51 EGIGIQVGMDD------GEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAGK 123 (334)
T ss_pred EEEEEEEEEEC------CEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCCC
Confidence 47898886532 269999999999999999 99999999999999999988889888877555689999988653
No 27
>KOG3542|consensus
Probab=97.84 E-value=2.6e-05 Score=92.79 Aligned_cols=84 Identities=31% Similarity=0.517 Sum_probs=73.0
Q ss_pred eEEEEEEeCCCCCcccEEEEeccCCCCCCccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcCCC
Q psy6070 1303 LVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQ 1382 (1454)
Q Consensus 1303 IRTVrLqKGpG~EGLGFSIRGGkDQP~Gd~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqSGq 1382 (1454)
.+.|.|.|..-..+|-|.+.||.+.+. +|||..|.+|+.|++.| |+.||+|++|||++.++++...|+++|++..
T Consensus 536 ~RqviLtk~sre~pl~f~L~GGsEkGf---gifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~eiLrnnt- 610 (1283)
T KOG3542|consen 536 PRQVILTKASREDPLMFRLVGGSEKGF---GIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEILRNNT- 610 (1283)
T ss_pred ceeEEEecccccCCceeEeccCccccc---eeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHHhcCCc-
Confidence 367888884334689999999987643 89999999999999999 9999999999999999999999999999974
Q ss_pred CeEEEEEEcC
Q psy6070 1383 GLVELVLQPN 1392 (1454)
Q Consensus 1383 GSVsLVVrR~ 1392 (1454)
.+.|+|...
T Consensus 611 -hLtltvKtN 619 (1283)
T KOG3542|consen 611 -HLTLTVKTN 619 (1283)
T ss_pred -eEEEEEecc
Confidence 778877653
No 28
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.77 E-value=0.00013 Score=64.63 Aligned_cols=59 Identities=24% Similarity=0.392 Sum_probs=51.0
Q ss_pred ccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcCC-CCeEEEEEEcCC
Q psy6070 1332 MGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTK-QGLVELVLQPNT 1393 (1454)
Q Consensus 1332 ~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqSG-qGSVsLVVrR~k 1393 (1454)
.|++|..|.++++|+++| |+.||+|++|||..+. +.++...+|.... +..+.|++.|..
T Consensus 10 ~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~--~~~d~~~~l~~~~~g~~v~l~v~r~g 69 (79)
T cd00991 10 AGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPIT--TLEDFMEALKPTKPGEVITVTVLPST 69 (79)
T ss_pred CcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcC--CHHHHHHHHhcCCCCCEEEEEEEECC
Confidence 479999999999999999 9999999999999998 6678888888752 367889888754
No 29
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.77 E-value=0.00012 Score=63.41 Aligned_cols=66 Identities=21% Similarity=0.256 Sum_probs=49.9
Q ss_pred ccEEEEeccCCCCCCccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcCCCCeEEEEEEcCC
Q psy6070 1317 LGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNT 1393 (1454)
Q Consensus 1317 LGFSIRGGkDQP~Gd~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqSGqGSVsLVVrR~k 1393 (1454)
+|+.+.... .+++|..|.++++|+.+| |++||+|++|||..+.. ..+++..++ . +..+.|++.|..
T Consensus 3 ~G~~~~~~~------~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~--~~~~l~~~~-~-~~~v~l~v~r~g 68 (80)
T cd00990 3 LGLTLDKEE------GLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDA--LQDRLKEYQ-A-GDPVELTVFRDD 68 (80)
T ss_pred ccEEEEccC------CcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHH--HHHHHHhcC-C-CCEEEEEEEECC
Confidence 677775431 269999999999999999 99999999999999875 334433332 2 257888888754
No 30
>PRK11186 carboxy-terminal protease; Provisional
Probab=97.76 E-value=6.2e-05 Score=90.41 Aligned_cols=72 Identities=22% Similarity=0.303 Sum_probs=61.5
Q ss_pred CcccEEEEeccCCCCCCccEEEEEeCCCChhhhcCCCCCCCEEEeeCC-----eeCCCCCHHHHHHHHhcCCCCeEEEEE
Q psy6070 1315 KSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNN-----EPLQGRTHAEAITIFKKTKQGLVELVL 1389 (1454)
Q Consensus 1315 EGLGFSIRGGkDQP~Gd~GIFISRVIPGGPADRDGRLRVGDRILEVNG-----ISVEGLTHEEAVSLLKqSGqGSVsLVV 1389 (1454)
.|+|+.+....+ .++|..|.+||||++++.|++||+|++||+ .++.|++.++++.+|++..+..|.|+|
T Consensus 244 ~GIGa~l~~~~~------~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV 317 (667)
T PRK11186 244 EGIGAVLQMDDD------YTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEI 317 (667)
T ss_pred eEEEEEEEEeCC------eEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEE
Confidence 578998866422 599999999999999844999999999994 467799999999999988778999999
Q ss_pred EcC
Q psy6070 1390 QPN 1392 (1454)
Q Consensus 1390 rR~ 1392 (1454)
.|.
T Consensus 318 ~r~ 320 (667)
T PRK11186 318 LPA 320 (667)
T ss_pred EeC
Confidence 874
No 31
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=97.61 E-value=0.00019 Score=80.74 Aligned_cols=60 Identities=30% Similarity=0.486 Sum_probs=52.3
Q ss_pred ccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcCC-CCeEEEEEEcCCC
Q psy6070 1332 MGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTK-QGLVELVLQPNTT 1394 (1454)
Q Consensus 1332 ~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqSG-qGSVsLVVrR~ks 1394 (1454)
.|++|..|.+|++|+++| |++||.|++|||+.+. +.++..++|+... +..+.|+|.|...
T Consensus 362 ~Gv~V~~V~~~SpA~~aG-L~~GDvI~~Ing~~V~--s~~d~~~~l~~~~~g~~v~l~v~R~g~ 422 (428)
T TIGR02037 362 KGVVVTKVVSGSPAARAG-LQPGDVILSVNQQPVS--SVAELRKVLDRAKKGGRVALLILRGGA 422 (428)
T ss_pred CceEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 489999999999999999 9999999999999997 6788888888642 3689999988653
No 32
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.58 E-value=0.00033 Score=61.19 Aligned_cols=59 Identities=29% Similarity=0.428 Sum_probs=48.8
Q ss_pred ccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcCC-CCeEEEEEEcCC
Q psy6070 1332 MGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTK-QGLVELVLQPNT 1393 (1454)
Q Consensus 1332 ~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqSG-qGSVsLVVrR~k 1393 (1454)
.+++|..|.++++|++.| |+.||+|++|||..+. +.+++..++.... +..+.|.+.|..
T Consensus 24 ~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~--~~~~~~~~l~~~~~~~~i~l~v~r~g 83 (90)
T cd00987 24 KGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVK--SVADLRRALAELKPGDKVTLTVLRGG 83 (90)
T ss_pred CEEEEEEECCCCHHHHcC-CCcCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECC
Confidence 379999999999999999 9999999999999997 4456667776642 368888887754
No 33
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=97.57 E-value=0.00019 Score=81.86 Aligned_cols=59 Identities=19% Similarity=0.375 Sum_probs=51.5
Q ss_pred cEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcCCCCeEEEEEEcCCC
Q psy6070 1333 GIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTT 1394 (1454)
Q Consensus 1333 GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqSGqGSVsLVVrR~ks 1394 (1454)
+++|..|.+||||+++| |++||+|++|||+.+. +.++....++...+..+.|+|.|...
T Consensus 222 ~~vV~~V~~~SpA~~AG-L~~GDvIl~Ing~~V~--s~~dl~~~l~~~~~~~v~l~v~R~g~ 280 (449)
T PRK10779 222 EPVLAEVQPNSAASKAG-LQAGDRIVKVDGQPLT--QWQTFVTLVRDNPGKPLALEIERQGS 280 (449)
T ss_pred CcEEEeeCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhCCCCEEEEEEEECCE
Confidence 57999999999999999 9999999999999996 77888888877554688999988754
No 34
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.47 E-value=0.00056 Score=59.93 Aligned_cols=57 Identities=23% Similarity=0.419 Sum_probs=48.3
Q ss_pred cEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcC-CCCeEEEEEEcCC
Q psy6070 1333 GIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKT-KQGLVELVLQPNT 1393 (1454)
Q Consensus 1333 GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqS-GqGSVsLVVrR~k 1393 (1454)
|++|..|.+|++|+. | |+.||+|++|||..+. +.++...+|+.. .+..+.|++.|..
T Consensus 9 Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~--~~~~~~~~l~~~~~~~~v~l~v~r~g 66 (79)
T cd00986 9 GVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFK--EAEELIDYIQSKKEGDTVKLKVKREE 66 (79)
T ss_pred CEEEEEECCCCchhh-C-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCCCEEEEEEEECC
Confidence 799999999999986 8 9999999999999997 577888888753 3357899988754
No 35
>PRK10942 serine endoprotease; Provisional
Probab=97.43 E-value=0.00041 Score=80.20 Aligned_cols=59 Identities=29% Similarity=0.442 Sum_probs=53.0
Q ss_pred ccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcCCCCeEEEEEEcCCC
Q psy6070 1332 MGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTT 1394 (1454)
Q Consensus 1332 ~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqSGqGSVsLVVrR~ks 1394 (1454)
.+++|..|.++++|++.| |++||+|++|||+.+. +.++..++|+..+ ..+.|+|.|...
T Consensus 408 ~gvvV~~V~~~S~A~~aG-L~~GDvIv~VNg~~V~--s~~dl~~~l~~~~-~~v~l~V~R~g~ 466 (473)
T PRK10942 408 KGVVVDNVKPGTPAAQIG-LKKGDVIIGANQQPVK--NIAELRKILDSKP-SVLALNIQRGDS 466 (473)
T ss_pred CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhCC-CeEEEEEEECCE
Confidence 479999999999999999 9999999999999998 5789999998865 789999988653
No 36
>PRK10139 serine endoprotease; Provisional
Probab=97.35 E-value=0.00043 Score=79.66 Aligned_cols=59 Identities=20% Similarity=0.333 Sum_probs=52.6
Q ss_pred ccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcCCCCeEEEEEEcCCC
Q psy6070 1332 MGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTT 1394 (1454)
Q Consensus 1332 ~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqSGqGSVsLVVrR~ks 1394 (1454)
.|++|..|.++++|+++| |+.||+|++|||+.+. +.++..++|+... ..+.|+|.|...
T Consensus 390 ~Gv~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~--~~~~~~~~l~~~~-~~v~l~v~R~g~ 448 (455)
T PRK10139 390 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVN--SIAEMRKVLAAKP-AIIALQIVRGNE 448 (455)
T ss_pred CceEEEEeCCCChHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhCC-CeEEEEEEECCE
Confidence 489999999999999999 9999999999999997 6788999998865 688999988653
No 37
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=97.31 E-value=0.00088 Score=76.15 Aligned_cols=59 Identities=22% Similarity=0.366 Sum_probs=52.1
Q ss_pred cEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcCCCCeEEEEEEcCCC
Q psy6070 1333 GIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTT 1394 (1454)
Q Consensus 1333 GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqSGqGSVsLVVrR~ks 1394 (1454)
++.|..|.+|+||+++| |++||+|++|||+.+. +.++....++...+..+.|+|.|...
T Consensus 204 g~vV~~V~~~SpA~~aG-L~~GD~Iv~Vng~~V~--s~~dl~~~l~~~~~~~v~l~v~R~g~ 262 (420)
T TIGR00054 204 EPVLSDVTPNSPAEKAG-LKEGDYIQSINGEKLR--SWTDFVSAVKENPGKSMDIKVERNGE 262 (420)
T ss_pred CcEEEEECCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCCceEEEEEECCE
Confidence 68999999999999999 9999999999999997 67889999987654678999988653
No 38
>KOG3938|consensus
Probab=97.07 E-value=0.001 Score=73.63 Aligned_cols=85 Identities=24% Similarity=0.278 Sum_probs=70.9
Q ss_pred CceEEEEEEeCCCCCcccEEEEeccCCCCCCccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcC
Q psy6070 1301 PTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKT 1380 (1454)
Q Consensus 1301 pEIRTVrLqKGpG~EGLGFSIRGGkDQP~Gd~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqS 1380 (1454)
.+.++|++.|+. .-||++|...- . .-.||.+|.+||..++--.+++||-|-+|||+++.|+-|-||+.+||..
T Consensus 125 Gq~kEv~v~Kse--dalGlTITDNG---~--GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel 197 (334)
T KOG3938|consen 125 GQAKEVEVVKSE--DALGLTITDNG---A--GYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKEL 197 (334)
T ss_pred CcceeEEEEecc--cccceEEeeCC---c--ceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhc
Confidence 455789999998 68999997631 1 2479999999999999989999999999999999999999999999998
Q ss_pred CCC-eEEEEEEcC
Q psy6070 1381 KQG-LVELVLQPN 1392 (1454)
Q Consensus 1381 GqG-SVsLVVrR~ 1392 (1454)
..+ ..+|.+..+
T Consensus 198 ~rge~ftlrLieP 210 (334)
T KOG3938|consen 198 PRGETFTLRLIEP 210 (334)
T ss_pred ccCCeeEEEeecc
Confidence 733 455555444
No 39
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=96.84 E-value=0.0046 Score=67.16 Aligned_cols=60 Identities=17% Similarity=0.189 Sum_probs=50.9
Q ss_pred ccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcCCC-CeEEEEEEcCCC
Q psy6070 1332 MGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQ-GLVELVLQPNTT 1394 (1454)
Q Consensus 1332 ~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqSGq-GSVsLVVrR~ks 1394 (1454)
.|+.|..+.++++|++.| |+.||.|++|||+++. +.+++.+++..... ..+.|+|.|...
T Consensus 191 ~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~--~~~~~~~~l~~~~~~~~v~l~V~R~G~ 251 (259)
T TIGR01713 191 EGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLR--DPEQAFQALQMLREETNLTLTVERDGQ 251 (259)
T ss_pred eEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCeEEEEEEECCE
Confidence 489999999999999999 9999999999999998 56667777766432 589999998653
No 40
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=96.76 E-value=0.0041 Score=70.31 Aligned_cols=61 Identities=28% Similarity=0.400 Sum_probs=50.0
Q ss_pred ccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcCC-CCeEEEEEEcCCCC
Q psy6070 1332 MGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTK-QGLVELVLQPNTTE 1395 (1454)
Q Consensus 1332 ~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqSG-qGSVsLVVrR~kse 1395 (1454)
.|++|..|.+|+||+++| |+.||+|++|||+.+. +..+...+|.... +..|.|+|.|....
T Consensus 257 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng~~i~--~~~~~~~~l~~~~~g~~v~l~v~R~g~~ 318 (428)
T TIGR02037 257 RGALVAQVLPGSPAEKAG-LKAGDVILSVNGKPIS--SFADLRRAIGTLKPGKKVTLGILRKGKE 318 (428)
T ss_pred CceEEEEccCCCChHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 489999999999999999 9999999999999998 5566666665432 35889999886533
No 41
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=96.61 E-value=0.0055 Score=68.31 Aligned_cols=59 Identities=22% Similarity=0.340 Sum_probs=49.8
Q ss_pred ccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcC-CCCeEEEEEEcCC
Q psy6070 1332 MGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKT-KQGLVELVLQPNT 1393 (1454)
Q Consensus 1332 ~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqS-GqGSVsLVVrR~k 1393 (1454)
.|++|..|.+++||+++| |+.||+|++|||+.+. +.++....|+.. .+..+.|+|.|..
T Consensus 278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~--s~~dl~~~l~~~~~g~~v~l~v~R~g 337 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAG-ILVRDVILKYDGKDVI--GAEELMDRIAETRPGSKVMVTVLRQG 337 (351)
T ss_pred ccceEeecCCCChHHHCC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECC
Confidence 489999999999999999 9999999999999997 566777777652 2368999998864
No 42
>PRK10139 serine endoprotease; Provisional
Probab=96.56 E-value=0.007 Score=69.99 Aligned_cols=60 Identities=30% Similarity=0.432 Sum_probs=50.9
Q ss_pred ccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhc-CCCCeEEEEEEcCCC
Q psy6070 1332 MGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKK-TKQGLVELVLQPNTT 1394 (1454)
Q Consensus 1332 ~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKq-SGqGSVsLVVrR~ks 1394 (1454)
.|++|..|.+++||+++| |+.||+|++|||+.+. +.++....|.. ..+..+.|+|.|...
T Consensus 290 ~Gv~V~~V~~~SpA~~AG-L~~GDvIl~InG~~V~--s~~dl~~~l~~~~~g~~v~l~V~R~G~ 350 (455)
T PRK10139 290 RGAFVSEVLPNSGSAKAG-VKAGDIITSLNGKPLN--SFAELRSRIATTEPGTKVKLGLLRNGK 350 (455)
T ss_pred CceEEEEECCCChHHHCC-CCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 489999999999999999 9999999999999998 56788777765 223588999988653
No 43
>PRK10898 serine endoprotease; Provisional
Probab=96.53 E-value=0.0079 Score=67.34 Aligned_cols=59 Identities=25% Similarity=0.439 Sum_probs=48.3
Q ss_pred ccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhc-CCCCeEEEEEEcCC
Q psy6070 1332 MGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKK-TKQGLVELVLQPNT 1393 (1454)
Q Consensus 1332 ~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKq-SGqGSVsLVVrR~k 1393 (1454)
.|++|..|.+++||++.| |+.||+|++|||+.+. +.++....|.. ..+..+.|+|.|..
T Consensus 279 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~--s~~~l~~~l~~~~~g~~v~l~v~R~g 338 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAI--SALETMDQVAEIRPGSVIPVVVMRDD 338 (353)
T ss_pred CeEEEEEECCCChHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECC
Confidence 489999999999999999 9999999999999997 44555555554 22357999998865
No 44
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=96.50 E-value=0.015 Score=58.62 Aligned_cols=90 Identities=21% Similarity=0.213 Sum_probs=60.6
Q ss_pred CceEEEEEEeC---CCCCcccEEEEeccCCCCCCccEEEEEeCCCChhhhcCCCCC-CCEEEeeCCeeCCCCCHHHHHHH
Q psy6070 1301 PTLVRVSFEKG---PGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVE-GDEILLFNNEPLQGRTHAEAITI 1376 (1454)
Q Consensus 1301 pEIRTVrLqKG---pG~EGLGFSIRGGkDQP~Gd~GIFISRVIPGGPADRDGRLRV-GDRILEVNGISVEGLTHEEAVSL 1376 (1454)
..++.|.+... .+.+-||++|+-..-......++-|.+|.+||||+.+| |.+ .|.|+.+++..+. ..++..++
T Consensus 9 ~~~R~v~i~ps~~w~~~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~--~~~~l~~~ 85 (138)
T PF04495_consen 9 QTTREVSIVPSKKWGGQGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLD--DEDDLFEL 85 (138)
T ss_dssp SSEEEEEE---SSSSSSSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE----STCHHHHH
T ss_pred CeEEEEEEccCcccCCCCCCcEEEEEecccccccceEEEeEecCCCHHHHCC-ccccccEEEEccceecC--CHHHHHHH
Confidence 34567777542 12357899998754432334589999999999999999 776 7999999998888 45788888
Q ss_pred HhcCCCCeEEEEEEcCC
Q psy6070 1377 FKKTKQGLVELVLQPNT 1393 (1454)
Q Consensus 1377 LKqSGqGSVsLVVrR~k 1393 (1454)
++...+..+.|.|....
T Consensus 86 v~~~~~~~l~L~Vyns~ 102 (138)
T PF04495_consen 86 VEANENKPLQLYVYNSK 102 (138)
T ss_dssp HHHTTTS-EEEEEEETT
T ss_pred HHHcCCCcEEEEEEECC
Confidence 88887678999987654
No 45
>PRK10942 serine endoprotease; Provisional
Probab=96.22 E-value=0.014 Score=67.80 Aligned_cols=61 Identities=25% Similarity=0.387 Sum_probs=50.3
Q ss_pred ccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcCC-CCeEEEEEEcCCCC
Q psy6070 1332 MGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTK-QGLVELVLQPNTTE 1395 (1454)
Q Consensus 1332 ~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqSG-qGSVsLVVrR~kse 1395 (1454)
.|++|..|.+++||+++| |+.||+|++|||+.+. +.++....|.... +..+.|.|.|....
T Consensus 311 ~GvlV~~V~~~SpA~~AG-L~~GDvIl~InG~~V~--s~~dl~~~l~~~~~g~~v~l~v~R~G~~ 372 (473)
T PRK10942 311 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPIS--SFAALRAQVGTMPVGSKLTLGLLRDGKP 372 (473)
T ss_pred CceEEEEECCCChHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCeE
Confidence 489999999999999999 9999999999999998 4566666665532 35788988886543
No 46
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=95.96 E-value=0.031 Score=64.81 Aligned_cols=69 Identities=22% Similarity=0.378 Sum_probs=55.2
Q ss_pred CcccEEEEeccCCCCCCccEEEEEe--------CCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcCCCCeEE
Q psy6070 1315 KSLGFSIVGGVDSPKGEMGIFVKTI--------FPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVE 1386 (1454)
Q Consensus 1315 EGLGFSIRGGkDQP~Gd~GIFISRV--------IPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqSGqGSVs 1386 (1454)
..+|+.+... ||+|... ..++||+.+| |+.||+|++|||..+. +.+++.++|+...+..+.
T Consensus 96 ~~iGI~l~t~--------GVlVvg~~~v~~~~g~~~SPAa~AG-Lq~GDiIvsING~~V~--s~~DL~~iL~~~~g~~V~ 164 (402)
T TIGR02860 96 QSIGVKLNTK--------GVLVVGFSDIETEKGKIHSPGEEAG-IQIGDRILKINGEKIK--NMDDLANLINKAGGEKLT 164 (402)
T ss_pred EEEEEEEecC--------EEEEEEEEcccccCCCCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCCeEE
Confidence 6788877553 5766543 2368999999 9999999999999997 678888999887657889
Q ss_pred EEEEcCCC
Q psy6070 1387 LVLQPNTT 1394 (1454)
Q Consensus 1387 LVVrR~ks 1394 (1454)
|+|.|...
T Consensus 165 LtV~R~Ge 172 (402)
T TIGR02860 165 LTIERGGK 172 (402)
T ss_pred EEEEECCE
Confidence 99988653
No 47
>KOG0606|consensus
Probab=95.80 E-value=0.02 Score=72.42 Aligned_cols=81 Identities=27% Similarity=0.364 Sum_probs=64.9
Q ss_pred EEEEeCCCCCcccEEEEe------ccCCCCCCccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhc
Q psy6070 1306 VSFEKGPGKKSLGFSIVG------GVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKK 1379 (1454)
Q Consensus 1306 VrLqKGpG~EGLGFSIRG------GkDQP~Gd~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKq 1379 (1454)
|.|.++. ++|||+++. +.+. .-.-..|-.|.+|+||..+| |+.||.|.-|||+.+.++.|.|++++|-.
T Consensus 630 I~i~~~~--~~yGft~~airVy~Gd~d~--ytvhh~v~sv~egsPA~~ag-ls~~DlIthvnge~v~gl~H~ev~~Lll~ 704 (1205)
T KOG0606|consen 630 ITIHFSG--KKYGFTLRAIRVYMGDKDV--YTVHHSVGSVEEGSPAFEAG-LSAGDLITHVNGEPVHGLVHTEVMELLLK 704 (1205)
T ss_pred eeeeccc--cccCceeeeEEEecCCccc--ceeeeeeeeecCCCCccccC-CCccceeEeccCcccchhhHHHHHHHHHh
Confidence 6777776 689988653 2221 11235788999999999999 99999999999999999999999999998
Q ss_pred CCCCeEEEEEEcC
Q psy6070 1380 TKQGLVELVLQPN 1392 (1454)
Q Consensus 1380 SGqGSVsLVVrR~ 1392 (1454)
.+ +.|.+.+..-
T Consensus 705 ~g-n~v~~~ttpl 716 (1205)
T KOG0606|consen 705 SG-NKVTLRTTPL 716 (1205)
T ss_pred cC-CeeEEEeecc
Confidence 87 6777766543
No 48
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=95.72 E-value=0.017 Score=66.39 Aligned_cols=59 Identities=14% Similarity=0.163 Sum_probs=46.4
Q ss_pred EEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcC-CCCeEEEEEEcCCCC
Q psy6070 1334 IFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKT-KQGLVELVLQPNTTE 1395 (1454)
Q Consensus 1334 IFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqS-GqGSVsLVVrR~kse 1395 (1454)
.+|..|.++|||+++| |+.||+|++|||+.+.+. ++....+... ++..+.++|.|....
T Consensus 128 ~lV~~V~~~SpA~kAG-Lk~GDvI~~vnG~~V~~~--~~l~~~v~~~~~g~~v~v~v~R~gk~ 187 (449)
T PRK10779 128 PVVGEIAPNSIAAQAQ-IAPGTELKAVDGIETPDW--DAVRLALVSKIGDESTTITVAPFGSD 187 (449)
T ss_pred ccccccCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhhccCCceEEEEEeCCcc
Confidence 4789999999999999 999999999999999855 4544444333 235799999887643
No 49
>KOG1738|consensus
Probab=95.47 E-value=0.039 Score=66.64 Aligned_cols=74 Identities=20% Similarity=0.327 Sum_probs=62.7
Q ss_pred CcccEEEEeccCCCCCCccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcCCCCeEEEEEEcCC
Q psy6070 1315 KSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNT 1393 (1454)
Q Consensus 1315 EGLGFSIRGGkDQP~Gd~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqSGqGSVsLVVrR~k 1393 (1454)
.|+|+.|..--+. .++|+.+.+++||+.++.|..||+|+.||+.-+.|..+.-+|.-|+....+.+.++..|..
T Consensus 213 eglg~~I~Ssydg-----~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~lkKrp~ 286 (638)
T KOG1738|consen 213 EGLGLYIDSSYDG-----PHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELTLKKRPV 286 (638)
T ss_pred cCCceEEeeecCC-----ceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccceeeeeccCC
Confidence 6899999886543 6899999999999999999999999999999999999999999999987444444444443
No 50
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=95.39 E-value=0.064 Score=51.04 Aligned_cols=71 Identities=24% Similarity=0.327 Sum_probs=45.6
Q ss_pred cccEEEEeccCCCCCCccEEEEEeCCC--------ChhhhcC-CCCCCCEEEeeCCeeCCCCCHHHHHHHHhcCCCCeEE
Q psy6070 1316 SLGFSIVGGVDSPKGEMGIFVKTIFPH--------GQAAESG-LLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVE 1386 (1454)
Q Consensus 1316 GLGFSIRGGkDQP~Gd~GIFISRVIPG--------GPADRDG-RLRVGDRILEVNGISVEGLTHEEAVSLLKqSGqGSVs 1386 (1454)
.||.-+.-.. .+..|.+|.+| ||..+-| .+++||.|++|||+.+.. -.....+|....+..|.
T Consensus 2 ~LGAd~~~~~------~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~--~~~~~~lL~~~agk~V~ 73 (88)
T PF14685_consen 2 LLGADFSYDN------GGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTA--DANPYRLLEGKAGKQVL 73 (88)
T ss_dssp B-SEEEEEET------TEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BT--TB-HHHHHHTTTTSEEE
T ss_pred ccceEEEEcC------CEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCC--CCCHHHHhcccCCCEEE
Confidence 3665555442 26889999987 6777777 678999999999999973 34566777777657999
Q ss_pred EEEEcCCC
Q psy6070 1387 LVLQPNTT 1394 (1454)
Q Consensus 1387 LVVrR~ks 1394 (1454)
|+|.+...
T Consensus 74 Ltv~~~~~ 81 (88)
T PF14685_consen 74 LTVNRKPG 81 (88)
T ss_dssp EEEE-STT
T ss_pred EEEecCCC
Confidence 99988754
No 51
>KOG4371|consensus
Probab=94.89 E-value=0.05 Score=68.51 Aligned_cols=150 Identities=21% Similarity=0.268 Sum_probs=110.0
Q ss_pred CCCCCCCCCCCCCCceeccCCccCccCCCCCCchhhhcccCCCCccccccccccccc-cCCCCCCC-CCceEEEEEEeCC
Q psy6070 1235 SNTNRASPNATNSNQALTNLTDSVSNTNQESPTSTELAKTSSGGFGLLHSLLASRSA-FRSRPQTC-EPTLVRVSFEKGP 1312 (1454)
Q Consensus 1235 SSGAARSPSsTqGDRLLeVNGEDVSNASQEEpSSVqLLKkSSgSVgLlhSiLASssv-LPSRPrs~-ppEIRTVrLqKGp 1312 (1454)
+.++..-|.+..||-++.+|+.-+.+..|.++ +.++...+..+.+.+-..++... .+.....+ ..-++.|.|.|.+
T Consensus 1178 ~~~~~~~pd~~~g~~l~~~n~i~~~~~~~~~~--~~~~~~~~~~~~~~~~r~~~~~~d~~~~s~~~~~~~l~~~~~~~~p 1255 (1332)
T KOG4371|consen 1178 SEPAISHPDIRVGDVLLYVNGIAVEGKVHQEV--VAMLRGGGDRVVLGVQRPPPAYSDQHHASSTSASAPLISVMLLKKP 1255 (1332)
T ss_pred cCCCCCCCCcchhhhhhhccceeeechhhHHH--HHHHhccCceEEEEeecCCcccccchhhhhhcccchhhhheeeecc
Confidence 44567788999999999999987777777777 66777666666554322111111 11111111 2345677777777
Q ss_pred CCCcccEEEEeccCCCCCCccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcCCCCeEEEEEEcC
Q psy6070 1313 GKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPN 1392 (1454)
Q Consensus 1313 G~EGLGFSIRGGkDQP~Gd~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqSGqGSVsLVVrR~ 1392 (1454)
..++|+.+....- ..+|||..+...+.|.-.|.|++||+++...|+++.+.+..+.++-++-. .+.+.|++.+.
T Consensus 1256 -~~~~~~~~~~~~~----s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~~v-~~p~~~~~~~~ 1329 (1332)
T KOG4371|consen 1256 -MATLGLSLAKRTM----SDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLKLV-QGPVQITVTRE 1329 (1332)
T ss_pred -cccccccccccCc----CCceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhhhc-cCchhheehhh
Confidence 4789998876543 24899999999999999999999999999999999999999999988865 47888887764
No 52
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=94.63 E-value=0.064 Score=61.47 Aligned_cols=56 Identities=20% Similarity=0.268 Sum_probs=46.0
Q ss_pred cEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcCCCCeEEEEEEcC
Q psy6070 1333 GIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPN 1392 (1454)
Q Consensus 1333 GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqSGqGSVsLVVrR~ 1392 (1454)
+.+|..|.++|||+++| |+.||.|++|||..+. +..+....+.... +.+.+.+.|.
T Consensus 129 g~~V~~V~~~SpA~~AG-L~~GDvI~~vng~~v~--~~~dl~~~ia~~~-~~v~~~I~r~ 184 (420)
T TIGR00054 129 GPVIELLDKNSIALEAG-IEPGDEILSVNGNKIP--GFKDVRQQIADIA-GEPMVEILAE 184 (420)
T ss_pred CceeeccCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhhc-ccceEEEEEe
Confidence 67899999999999999 9999999999999987 4566666666555 5677777664
No 53
>KOG0792|consensus
Probab=94.18 E-value=0.14 Score=64.87 Aligned_cols=78 Identities=23% Similarity=0.440 Sum_probs=63.7
Q ss_pred CcccEEEEeccCCC--CCCccEEEEEeC-------------CCChhhhcC-CCCCCCEEEeeCCeeCCCCCHHHHHHHHh
Q psy6070 1315 KSLGFSIVGGVDSP--KGEMGIFVKTIF-------------PHGQAAESG-LLVEGDEILLFNNEPLQGRTHAEAITIFK 1378 (1454)
Q Consensus 1315 EGLGFSIRGGkDQP--~Gd~GIFISRVI-------------PGGPADRDG-RLRVGDRILEVNGISVEGLTHEEAVSLLK 1378 (1454)
+.+||.+.|+.+.- .-..++.+++|. ++++|+.+. ++..||+++.|||.++...+|+++|.+|+
T Consensus 716 g~~g~~~~g~~dq~~~~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~~~~vs~ir 795 (1144)
T KOG0792|consen 716 GRFGFNLKGGLDQLQNLLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSESEHDQVVSLIR 795 (1144)
T ss_pred ccccccccchhhhhhccccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeecccccccccccchHHHHh
Confidence 67999999998873 123578899999 999998876 99999999999999999999999999999
Q ss_pred cCCC----CeEEEEEEcC
Q psy6070 1379 KTKQ----GLVELVLQPN 1392 (1454)
Q Consensus 1379 qSGq----GSVsLVVrR~ 1392 (1454)
.... +...|++.+.
T Consensus 796 s~r~~~~s~e~~l~~~~~ 813 (1144)
T KOG0792|consen 796 SPRENITSGELMLTGRPN 813 (1144)
T ss_pred hhhhccccccccccCCcc
Confidence 8863 2344444443
No 54
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=93.67 E-value=0.13 Score=60.47 Aligned_cols=50 Identities=18% Similarity=0.265 Sum_probs=40.6
Q ss_pred EEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcCCCCeEEEEEEc
Q psy6070 1336 VKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQP 1391 (1454)
Q Consensus 1336 ISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqSGqGSVsLVVrR 1391 (1454)
|..|.+|++|+.+| |++||+|++|||+.+. +..+....+. . ..+.|.|.+
T Consensus 2 I~~V~pgSpAe~AG-Le~GD~IlsING~~V~--Dw~D~~~~l~--~-e~l~L~V~~ 51 (433)
T TIGR03279 2 ISAVLPGSIAEELG-FEPGDALVSINGVAPR--DLIDYQFLCA--D-EELELEVLD 51 (433)
T ss_pred cCCcCCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHhc--C-CcEEEEEEc
Confidence 67899999999999 9999999999999997 5566665663 2 468888863
No 55
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=92.85 E-value=0.09 Score=62.89 Aligned_cols=42 Identities=29% Similarity=0.430 Sum_probs=37.0
Q ss_pred CcccEEEEeccCCCCCCccEEEEEeCCCChhhhcCCCCCCCEEEeeCCe
Q psy6070 1315 KSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNE 1363 (1454)
Q Consensus 1315 EGLGFSIRGGkDQP~Gd~GIFISRVIPGGPADRDGRLRVGDRILEVNGI 1363 (1454)
-.||+.+....+ ...|..|.+||||.++| |.+||.|++|||.
T Consensus 451 ~~LGl~v~~~~g------~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~ 492 (558)
T COG3975 451 YYLGLKVKSEGG------HEKITFVFPGGPAYKAG-LSPGDKIVAINGI 492 (558)
T ss_pred cccceEecccCC------eeEEEecCCCChhHhcc-CCCccEEEEEcCc
Confidence 368888866433 58999999999999999 9999999999999
No 56
>KOG3129|consensus
Probab=92.47 E-value=0.31 Score=53.41 Aligned_cols=62 Identities=23% Similarity=0.318 Sum_probs=47.0
Q ss_pred cEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCC-HHHHHHHHhcCCCCeEEEEEEcCCCC
Q psy6070 1333 GIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRT-HAEAITIFKKTKQGLVELVLQPNTTE 1395 (1454)
Q Consensus 1333 GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLT-HEEAVSLLKqSGqGSVsLVVrR~kse 1395 (1454)
-++|..|.+||||+.+| |++||+|+.+..+.-.+.. ........+..-...+.++|.|....
T Consensus 140 Fa~V~sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~ 202 (231)
T KOG3129|consen 140 FAVVDSVVPGSPADEAG-LCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQK 202 (231)
T ss_pred eEEEeecCCCChhhhhC-cccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCE
Confidence 47999999999999999 9999999998766544443 55555555555445788888887644
No 57
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.63 E-value=0.61 Score=51.57 Aligned_cols=59 Identities=24% Similarity=0.382 Sum_probs=47.8
Q ss_pred ccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcCC-CCeEEEEEEcCC
Q psy6070 1332 MGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTK-QGLVELVLQPNT 1393 (1454)
Q Consensus 1332 ~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqSG-qGSVsLVVrR~k 1393 (1454)
.|++|..|.+++||++.| ++.||.|+++||..+. +..+....+.... +..+.+.+.|..
T Consensus 270 ~G~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~--~~~~l~~~v~~~~~g~~v~~~~~r~g 329 (347)
T COG0265 270 AGAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVA--SLSDLVAAVASNRPGDEVALKLLRGG 329 (347)
T ss_pred CceEEEecCCCChHHHcC-CCCCCEEEEECCEEcc--CHHHHHHHHhccCCCCEEEEEEEECC
Confidence 379999999999999999 9999999999999998 4444444444443 358999998874
No 58
>KOG3532|consensus
Probab=90.32 E-value=0.74 Score=56.80 Aligned_cols=68 Identities=18% Similarity=0.340 Sum_probs=56.6
Q ss_pred CcccEEEEeccCCCCCCccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcCCCCeEEEEEEc
Q psy6070 1315 KSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQP 1391 (1454)
Q Consensus 1315 EGLGFSIRGGkDQP~Gd~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqSGqGSVsLVVrR 1391 (1454)
..+|+....... ..+-|..|.++++|+++. +.+||.|++|||+++. +..|+...++... +.|..++.+
T Consensus 386 ~~ig~vf~~~~~-----~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi~--s~~q~~~~~~s~~-~~~~~l~~~ 453 (1051)
T KOG3532|consen 386 SPIGLVFDKNTN-----RAVKVCTVEDNSLADKAA-FKPGDVLVAINNVPIR--SERQATRFLQSTT-GDLTVLVER 453 (1051)
T ss_pred CceeEEEecCCc-----eEEEEEEecCCChhhHhc-CCCcceEEEecCccch--hHHHHHHHHHhcc-cceEEEEee
Confidence 568887765433 378999999999999998 9999999999999998 8899999999986 566555555
No 59
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=89.45 E-value=0.66 Score=52.06 Aligned_cols=46 Identities=15% Similarity=0.257 Sum_probs=34.6
Q ss_pred hhcCCCCCCCEEEeeCCeeCCCCCHH-HHHHHHhcCCCCeEEEEEEcCCC
Q psy6070 1346 AESGLLVEGDEILLFNNEPLQGRTHA-EAITIFKKTKQGLVELVLQPNTT 1394 (1454)
Q Consensus 1346 DRDGRLRVGDRILEVNGISVEGLTHE-EAVSLLKqSGqGSVsLVVrR~ks 1394 (1454)
.+.| |+.||.+++|||.++.+.... ++++.|+.. ..+.|+|.|...
T Consensus 221 ~~~G-Lq~GDva~sING~dL~D~~qa~~l~~~L~~~--tei~ltVeRdGq 267 (276)
T PRK09681 221 DASG-FKEGDIAIALNQQDFTDPRAMIALMRQLPSM--DSIQLTVLRKGA 267 (276)
T ss_pred HHcC-CCCCCEEEEeCCeeCCCHHHHHHHHHHhccC--CeEEEEEEECCE
Confidence 4578 999999999999999854432 344445554 489999999764
No 60
>KOG4371|consensus
Probab=88.36 E-value=0.61 Score=59.50 Aligned_cols=86 Identities=20% Similarity=0.356 Sum_probs=66.9
Q ss_pred CCceEEEEEEeCCCCCcccEEEEeccCCCCCCccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhc
Q psy6070 1300 EPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKK 1379 (1454)
Q Consensus 1300 ppEIRTVrLqKGpG~EGLGFSIRGGkDQP~Gd~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKq 1379 (1454)
-+..+.+.+-+.+ ..||..|..-.. .+.|+...-.+...+-. |++||.|+.|||+.+++.-|.+|+.++++
T Consensus 1145 ~p~~i~~~~~r~~--~~l~~~~a~~~~------~~~~~~~~~~~~~~~pd-~~~g~~l~~~n~i~~~~~~~~~~~~~~~~ 1215 (1332)
T KOG4371|consen 1145 GPRVIDVELDRNE--GSLGVQIASLSG------RVCIKQLTSEPAISHPD-IRVGDVLLYVNGIAVEGKVHQEVVAMLRG 1215 (1332)
T ss_pred CCccccccCCCCC--CCCCceeccCcc------ceehhhcccCCCCCCCC-cchhhhhhhccceeeechhhHHHHHHHhc
Confidence 3556677777777 479999877533 35666655554444434 99999999999999999999999999999
Q ss_pred CCCCeEEEEEEcCCCC
Q psy6070 1380 TKQGLVELVLQPNTTE 1395 (1454)
Q Consensus 1380 SGqGSVsLVVrR~kse 1395 (1454)
.+ ..|.|-|.|+...
T Consensus 1216 ~~-~~~~~~~~r~~~~ 1230 (1332)
T KOG4371|consen 1216 GG-DRVVLGVQRPPPA 1230 (1332)
T ss_pred cC-ceEEEEeecCCcc
Confidence 87 7999999997655
No 61
>KOG1320|consensus
Probab=87.13 E-value=1.3 Score=52.84 Aligned_cols=61 Identities=15% Similarity=0.323 Sum_probs=47.9
Q ss_pred ccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcCCC-CeEEEEEEcCCCC
Q psy6070 1332 MGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQ-GLVELVLQPNTTE 1395 (1454)
Q Consensus 1332 ~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqSGq-GSVsLVVrR~kse 1395 (1454)
++++|++|++|+++...+ +..||+|+.|||..+.++ .++.++|+.+.. +.|.++.++..+.
T Consensus 398 q~v~is~Vlp~~~~~~~~-~~~g~~V~~vng~~V~n~--~~l~~~i~~~~~~~~v~vl~~~~~e~ 459 (473)
T KOG1320|consen 398 QLVLVSQVLPGSINGGYG-LKPGDQVVKVNGKPVKNL--KHLYELIEECSTEDKVAVLDRRSAED 459 (473)
T ss_pred eEEEEEEeccCCCccccc-ccCCCEEEEECCEEeech--HHHHHHHHhcCcCceEEEEEecCccc
Confidence 479999999999999988 999999999999999965 456677777652 3566666655443
No 62
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=87.08 E-value=1.7 Score=50.08 Aligned_cols=59 Identities=22% Similarity=0.406 Sum_probs=51.0
Q ss_pred cEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcCC-CCeEEEEEEcCCCC
Q psy6070 1333 GIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTK-QGLVELVLQPNTTE 1395 (1454)
Q Consensus 1333 GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqSG-qGSVsLVVrR~kse 1395 (1454)
|||+..|..++++ .|.|+.||.|++|||+.+. +.+|..+.++... +..|++...|....
T Consensus 131 gvyv~~v~~~~~~--~gkl~~gD~i~avdg~~f~--s~~e~i~~v~~~k~Gd~VtI~~~r~~~~ 190 (342)
T COG3480 131 GVYVLSVIDNSPF--KGKLEAGDTIIAVDGEPFT--SSDELIDYVSSKKPGDEVTIDYERHNET 190 (342)
T ss_pred eEEEEEccCCcch--hceeccCCeEEeeCCeecC--CHHHHHHHHhccCCCCeEEEEEEeccCC
Confidence 7999999999999 6789999999999999998 8889999998765 36899999875433
No 63
>KOG1421|consensus
Probab=82.50 E-value=2.5 Score=52.65 Aligned_cols=59 Identities=27% Similarity=0.353 Sum_probs=48.3
Q ss_pred cEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcCCCCeEEEEEEcCCCC
Q psy6070 1333 GIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTTE 1395 (1454)
Q Consensus 1333 GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqSGqGSVsLVVrR~kse 1395 (1454)
-++|..|.++|+|+. .|++||.|++||+..+. ...++.++|-..-+..+.|+|.|....
T Consensus 304 mLvV~~vL~~gpa~k--~Le~GDillavN~t~l~--df~~l~~iLDegvgk~l~LtI~Rggqe 362 (955)
T KOG1421|consen 304 MLVVETVLPEGPAEK--KLEPGDILLAVNSTCLN--DFEALEQILDEGVGKNLELTIQRGGQE 362 (955)
T ss_pred eEEEEEeccCCchhh--ccCCCcEEEEEcceehH--HHHHHHHHHhhccCceEEEEEEeCCEE
Confidence 478899999999977 69999999999987775 556777777665556899999998754
No 64
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=81.73 E-value=5.3 Score=45.07 Aligned_cols=71 Identities=18% Similarity=0.217 Sum_probs=49.5
Q ss_pred EEEEEEeCCCCCcccEEEEeccCCCCCCccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcCC-C
Q psy6070 1304 VRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTK-Q 1382 (1454)
Q Consensus 1304 RTVrLqKGpG~EGLGFSIRGGkDQP~Gd~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqSG-q 1382 (1454)
+...+.|++ +-+|+.+.-|++ ++.=+..| |+.||..++||+.++. ..+++..+|+... .
T Consensus 196 rltpv~r~e--ki~Gyr~~pgkd---------------~slF~~sg-lq~GDIavaiNnldlt--dp~~m~~llq~l~~m 255 (275)
T COG3031 196 RLTPVIRNE--KIEGYRFEPGKD---------------GSLFYKSG-LQRGDIAVAINNLDLT--DPEDMFRLLQMLRNM 255 (275)
T ss_pred EeeeEeeCC--ceEEEEecCCCC---------------cchhhhhc-CCCcceEEEecCcccC--CHHHHHHHHHhhhcC
Confidence 334444544 567877776654 35556678 9999999999999886 5566666666554 2
Q ss_pred CeEEEEEEcCCC
Q psy6070 1383 GLVELVLQPNTT 1394 (1454)
Q Consensus 1383 GSVsLVVrR~ks 1394 (1454)
..+.|+|.|.+.
T Consensus 256 ~s~qlTv~R~G~ 267 (275)
T COG3031 256 PSLQLTVIRRGK 267 (275)
T ss_pred cceEEEEEecCc
Confidence 478999988754
No 65
>KOG4407|consensus
Probab=74.51 E-value=1.6 Score=56.84 Aligned_cols=61 Identities=28% Similarity=0.562 Sum_probs=55.4
Q ss_pred cEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcCCCCeEEEEEEcCCCC
Q psy6070 1333 GIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTTE 1395 (1454)
Q Consensus 1333 GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqSGqGSVsLVVrR~kse 1395 (1454)
-|||..|.+.|+|..+. |+.||+++.||...+.++.+.+++.+|++.. -.+.|.|.+....
T Consensus 144 T~~~~eV~~n~~~~~a~-LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~-~~~~~~~~P~~~d 204 (1973)
T KOG4407|consen 144 TIFIKEVQANGPAHYAN-LQTGDRVLMVNNQPIAGIAYSTIVSMIKQTP-AVLTLHVVPKECD 204 (1973)
T ss_pred hhhhhhhccCChhHHHh-hhccceeEEeecCcccchhhhhhhhhhccCC-CCCCceeccccCc
Confidence 58999999999999998 9999999999999999999999999999997 6778888776544
No 66
>KOG4407|consensus
Probab=64.54 E-value=5.5 Score=52.44 Aligned_cols=83 Identities=11% Similarity=0.084 Sum_probs=59.3
Q ss_pred EEEEEeCCCCCcccEEEEeccCCCC----------------------CCccEEEEEeCCCChhhhcCCCCCCCEEEeeCC
Q psy6070 1305 RVSFEKGPGKKSLGFSIVGGVDSPK----------------------GEMGIFVKTIFPHGQAAESGLLVEGDEILLFNN 1362 (1454)
Q Consensus 1305 TVrLqKGpG~EGLGFSIRGGkDQP~----------------------Gd~GIFISRVIPGGPADRDGRLRVGDRILEVNG 1362 (1454)
.|.+.|.+ ..||||+|+--.-.++ ...-+++.++..++++..+| +..||.|+.|||
T Consensus 48 ~~V~~rR~-nQGFGFTLRHFIaYPPEd~~a~Ss~sG~~~Gsa~~~~~~~~s~~~~Q~~s~~~~~nsG-~~s~~~v~~itG 125 (1973)
T KOG4407|consen 48 LIVIRRRP-NQGFGFTLRHFIAYPPEDDQASSSASGLVSGSATAATAASVSTNWPQEASSAAGSNSG-SSSSVGVAGITG 125 (1973)
T ss_pred eEEEEecC-CCCcceeeeeeeecCchhhhhhhhhccccccchhcccccccccccchhcccCcccccC-cccccceeeecc
Confidence 34444444 3899999874322211 01247999999999999999 999999999999
Q ss_pred eeCCCCCHHHHHHHHhcCCCCeEEEEEEc
Q psy6070 1363 EPLQGRTHAEAITIFKKTKQGLVELVLQP 1391 (1454)
Q Consensus 1363 ISVEGLTHEEAVSLLKqSGqGSVsLVVrR 1391 (1454)
..+.+.| ..+.-+++... ..+.+.|..
T Consensus 126 ~e~~~~T-S~~~~~vk~~e-T~~~~eV~~ 152 (1973)
T KOG4407|consen 126 LEPTSPT-SLPPYQVKAME-TIFIKEVQA 152 (1973)
T ss_pred cccCCCc-cccHHHHhhhh-hhhhhhhcc
Confidence 9999998 77777777763 344444443
No 67
>PF12812 PDZ_1: PDZ-like domain
Probab=63.05 E-value=21 Score=33.52 Aligned_cols=46 Identities=22% Similarity=0.208 Sum_probs=38.6
Q ss_pred cEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcCC
Q psy6070 1333 GIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTK 1381 (1454)
Q Consensus 1333 GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqSG 1381 (1454)
++++.....|+++...| +..|-.|..|||+.+. +.++.++.+|..+
T Consensus 31 ~gv~v~~~~g~~~~~~~-i~~g~iI~~Vn~kpt~--~Ld~f~~vvk~ip 76 (78)
T PF12812_consen 31 GGVYVAVSGGSLAFAGG-ISKGFIITSVNGKPTP--DLDDFIKVVKKIP 76 (78)
T ss_pred CEEEEEecCCChhhhCC-CCCCeEEEeECCcCCc--CHHHHHHHHHhCC
Confidence 35666668888888776 9999999999999998 7888888888775
No 68
>KOG3834|consensus
Probab=55.74 E-value=38 Score=40.99 Aligned_cols=87 Identities=17% Similarity=0.087 Sum_probs=60.0
Q ss_pred ceEEEEEEeCCCCCc---ccEEEEeccCCCCCCccEEEEEeCCCChhhhcCCCCCCCEEEee-CCeeCCCCCHHHHHHHH
Q psy6070 1302 TLVRVSFEKGPGKKS---LGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLF-NNEPLQGRTHAEAITIF 1377 (1454)
Q Consensus 1302 EIRTVrLqKGpG~EG---LGFSIRGGkDQP~Gd~GIFISRVIPGGPADRDGRLRVGDRILEV-NGISVEGLTHEEAVSLL 1377 (1454)
++++|.|.... ..+ ||++|+=-........-..|-+|.+.+||+++|....+|.|+-+ +. ...+.++...+|
T Consensus 77 ~~R~v~I~ps~-~wggqllGvsvrFcsf~~A~~~vwHvl~V~p~SPaalAgl~~~~DYivG~~~~---~~~~~eDl~~lI 152 (462)
T KOG3834|consen 77 EVRIVEIVPSN-NWGGQLLGVSVRFCSFDGAVESVWHVLSVEPNSPAALAGLRPYTDYIVGIWDA---VMHEEEDLFTLI 152 (462)
T ss_pred eeEEEEecccc-cccccccceEEEeccCccchhheeeeeecCCCCHHHhcccccccceEecchhh---hccchHHHHHHH
Confidence 45677776554 245 88888764433333345689999999999999966699999876 44 344667777777
Q ss_pred hcCCCCeEEEEEEcC
Q psy6070 1378 KKTKQGLVELVLQPN 1392 (1454)
Q Consensus 1378 KqSGqGSVsLVVrR~ 1392 (1454)
.......+.|.|.-.
T Consensus 153 eshe~kpLklyVYN~ 167 (462)
T KOG3834|consen 153 ESHEGKPLKLYVYNH 167 (462)
T ss_pred HhccCCCcceeEeec
Confidence 766555677766443
No 69
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=51.32 E-value=43 Score=37.29 Aligned_cols=54 Identities=19% Similarity=0.347 Sum_probs=40.8
Q ss_pred EEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcCCCCe---EEEEEEc
Q psy6070 1335 FVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGL---VELVLQP 1391 (1454)
Q Consensus 1335 FISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqSGqGS---VsLVVrR 1391 (1454)
++..+..+++|..+| ++.||+|+++|+..+. +.+++..++....... +.+.+.|
T Consensus 132 ~~~~v~~~s~a~~a~-l~~Gd~iv~~~~~~i~--~~~~~~~~~~~~~~~~~~~~~i~~~~ 188 (375)
T COG0750 132 VVGEVAPKSAAALAG-LRPGDRIVAVDGEKVA--SWDDVRRLLVAAAGDVFNLLTILVIR 188 (375)
T ss_pred eeeecCCCCHHHHcC-CCCCCEEEeECCEEcc--CHHHHHHHHHhccCCcccceEEEEEe
Confidence 444799999999999 9999999999999998 5555555555433233 5677777
No 70
>KOG3834|consensus
Probab=45.37 E-value=29 Score=41.85 Aligned_cols=62 Identities=21% Similarity=0.211 Sum_probs=51.6
Q ss_pred ccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcCCCCeEEEEEEcCCCC
Q psy6070 1332 MGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTTE 1395 (1454)
Q Consensus 1332 ~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqSGqGSVsLVVrR~kse 1395 (1454)
.+.-|.+|..+++|+++|..---|.|++|||+.+. ...+...++||...+ .|.|+|...+..
T Consensus 15 eg~hvlkVqedSpa~~aglepffdFIvSI~g~rL~-~dnd~Lk~llk~~se-kVkltv~n~kt~ 76 (462)
T KOG3834|consen 15 EGYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLN-KDNDTLKALLKANSE-KVKLTVYNSKTQ 76 (462)
T ss_pred eeEEEEEeecCChHHhcCcchhhhhhheeCccccc-CchHHHHHHHHhccc-ceEEEEEecccc
Confidence 37899999999999999988899999999998885 567788888888764 588888665443
No 71
>KOG1703|consensus
Probab=38.62 E-value=36 Score=40.47 Aligned_cols=74 Identities=30% Similarity=0.386 Sum_probs=62.4
Q ss_pred cccEEEEeccCCCCCCccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcCCCCeEEEEEEcCCCC
Q psy6070 1316 SLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTTE 1395 (1454)
Q Consensus 1316 GLGFSIRGGkDQP~Gd~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqSGqGSVsLVVrR~kse 1395 (1454)
+|||.+.++ +. .++|-|..+.+++.++... +..+|.|..++|..-..++|.++..-++..+ ....+.+.|....
T Consensus 9 ~~~~r~~~~-~~---~~~l~~~~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~ 82 (479)
T KOG1703|consen 9 PWGFRLQGG-DF---LQPLRILRVTPGGKAADAE-LDPGDIIAAIDGENEETMTHLEAQNKIKGSG-SQLALTLSRSETS 82 (479)
T ss_pred Cceeeeccc-cc---ccccceeccCCCCcccccc-ccccccccccccccccccccccccCcccccc-ccccccccccccc
Confidence 467776664 33 3469999999999999988 9999999999999999999999999999987 7888888886433
No 72
>KOG1945|consensus
Probab=25.91 E-value=85 Score=37.40 Aligned_cols=85 Identities=27% Similarity=0.367 Sum_probs=66.0
Q ss_pred EEEEEEeCCCCCcccEEEEe---ccCCCCCCccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcC
Q psy6070 1304 VRVSFEKGPGKKSLGFSIVG---GVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKT 1380 (1454)
Q Consensus 1304 RTVrLqKGpG~EGLGFSIRG---GkDQP~Gd~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqS 1380 (1454)
..+-+.++. .|+|+.+.| |.+......+||+..+.+|+.-++.|+..+-|.+..+.+..+.++.....++..+.+
T Consensus 101 ~e~av~~~~--~g~g~~~~~~~~gkk~~~~e~~~~~~sa~sg~~~~r~g~~sved~~~s~~~k~lp~vp~s~~~es~g~S 178 (377)
T KOG1945|consen 101 FEVAVEKGA--EGLGVSIIGMGVGKKSGLEELGIFVKSATSGGAVHRDGRWSVEDVEVSVDSKSLPGVPFSWFAESLGGS 178 (377)
T ss_pred hhhhccCCc--CCCCccccccccchhccchhhcceeecccccccccccccccccccccccccCCCCCcchhhhhcccccc
Confidence 456666665 678888776 222222356899999999999999999999999999999999999999999999887
Q ss_pred CCCeEEEEEEc
Q psy6070 1381 KQGLVELVLQP 1391 (1454)
Q Consensus 1381 GqGSVsLVVrR 1391 (1454)
- ..+.+...+
T Consensus 179 ~-~~~n~~s~~ 188 (377)
T KOG1945|consen 179 S-SRVNFTSPT 188 (377)
T ss_pred h-hccCCcccc
Confidence 5 455444433
No 73
>KOG1421|consensus
Probab=21.31 E-value=1.7e+02 Score=37.74 Aligned_cols=47 Identities=15% Similarity=0.089 Sum_probs=43.1
Q ss_pred ccEEEEEeCCCChhhhcCCCCCCCEEEeeCCeeCCCCCHHHHHHHHhcCCC
Q psy6070 1332 MGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQ 1382 (1454)
Q Consensus 1332 ~GIFISRVIPGGPADRDGRLRVGDRILEVNGISVEGLTHEEAVSLLKqSGq 1382 (1454)
.|+||...-.|+||.+ + |+.-..|.+|||+.+- +.++-+.+|+....
T Consensus 862 ~gvyvt~rg~gspalq-~-l~aa~fitavng~~t~--~lddf~~~~~~ipd 908 (955)
T KOG1421|consen 862 EGVYVTSRGYGSPALQ-M-LRAAHFITAVNGHDTN--TLDDFYHMLLEIPD 908 (955)
T ss_pred CceEEeecccCChhHh-h-cchheeEEEecccccC--cHHHHHHHHhhCCC
Confidence 4899999999999998 6 9999999999999886 88999999999873
No 74
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=20.78 E-value=1.3e+02 Score=32.84 Aligned_cols=37 Identities=16% Similarity=0.140 Sum_probs=30.9
Q ss_pred ccEEEEeccCCCCCCccEEEEEeCCCChhhhcCCCCCCCEEEee
Q psy6070 1317 LGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLF 1360 (1454)
Q Consensus 1317 LGFSIRGGkDQP~Gd~GIFISRVIPGGPADRDGRLRVGDRILEV 1360 (1454)
.|+.+....+ .+.|..|..||+|++.| +..|++|++|
T Consensus 113 ~GL~l~~e~~------~~~Vd~v~fgS~A~~~g-~d~d~~I~~v 149 (183)
T PF11874_consen 113 AGLTLMEEGG------KVIVDEVEFGSPAEKAG-IDFDWEITEV 149 (183)
T ss_pred CCCEEEeeCC------EEEEEecCCCCHHHHcC-CCCCcEEEEE
Confidence 5777766322 59999999999999999 9999989877
Done!