RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6070
(1454 letters)
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium, synaptosome,
tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Length = 120
Score = 111 bits (280), Expect = 5e-29
Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 3/110 (2%)
Query: 1283 HSLLASRSAFRSRPQTCEPTLVR-VSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFP 1341
H +S + + +R V +KGP SLG SI GGV SP G++ IF+ + P
Sbjct: 4 HHHHSSGVDLGTENLYFQSMGLRTVEMKKGPTD-SLGISIAGGVGSPLGDVPIFIAMMHP 62
Query: 1342 HGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQP 1391
G AA++ L GD I+ +G TH +A+ + K G +E+ +
Sbjct: 63 TGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNAS-GSIEMQVVA 111
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics,
SGC, structural genomics consortium, unknown function;
1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 111 bits (280), Expect = 6e-29
Identities = 44/113 (38%), Positives = 62/113 (54%), Gaps = 7/113 (6%)
Query: 1282 LHSLLASRSAF----RSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVK 1337
+H S + P ++ E+GP LGFSIVGG SP G++ I+VK
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMPQCKSITLERGP--DGLGFSIVGGYGSPHGDLPIYVK 58
Query: 1338 TIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQ 1390
T+F G A+E G L GD+I+ N + L+G TH EA+ I K+TK G V L++
Sbjct: 59 TVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTK-GTVTLMVL 110
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ
domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 111 bits (280), Expect = 6e-29
Identities = 35/104 (33%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 1287 ASRSAFRSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAA 1346
AS ++ S T E T+ V+ EK LGFS+ GG S G+ + + IF +
Sbjct: 14 ASAASDVSVESTAEATVCTVTLEKMSA--GLGFSLEGGKGSLHGDKPLTINRIFKGAASE 71
Query: 1347 ESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQ 1390
+S + GDEIL +QG T EA I K G V +V++
Sbjct: 72 QSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIR 115
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 111 bits (279), Expect = 8e-29
Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Query: 1283 HSLLASRSAFRSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPH 1342
HS Q+ +V + +K PG+ SLG ++ GG + ++ I+V ++ P
Sbjct: 7 HSSGVDLGTENLYFQSMHEKVVNI--QKDPGE-SLGMTVAGGASHREWDLPIYVISVEPG 63
Query: 1343 GQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQP 1391
G + G + GD +L + L + +EA+ + K+T +V L+
Sbjct: 64 GVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLKALEV 112
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 109 bits (274), Expect = 2e-28
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 1296 PQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGD 1355
P+ + + V K SLG S+ GGV++ GI+VK + P G A G + +GD
Sbjct: 1 PKPGD--IFEVELAKNDN--SLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGD 56
Query: 1356 EILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQ 1390
+L N L+G TH +A+ + T Q +V L+L+
Sbjct: 57 RVLAVNGVSLEGATHKQAVETLRNTGQ-VVHLLLE 90
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics,
alternative splicing, cell cycle, cell division, cell
junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Length = 111
Score = 109 bits (274), Expect = 3e-28
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 1306 VSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPL 1365
+ +KG + LGFSI + G I+VK I P G A + G L GD ++ N L
Sbjct: 15 IQLKKGT--EGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDL 72
Query: 1366 QGRTHAEAITIFKKTKQ-GLVELVL 1389
G++ E +++ + TK G V L++
Sbjct: 73 AGKSQEEVVSLLRSTKMEGTVSLLV 97
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics,
structural genomics consortium, SGC; 2.70A {Homo sapiens}
Length = 117
Score = 109 bits (274), Expect = 3e-28
Identities = 36/106 (33%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
Query: 1295 RPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEG 1354
+ + K P LGFS+VG +GE+GIFV+ I A G L E
Sbjct: 13 KNMAQGRHVEVFELLKPPSG-GLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKET 71
Query: 1355 DEILLFNNEPL-QGRTHAEAITIFKKTKQGLVELVLQPNTTEADSK 1399
D+IL N + L Q TH +AI+I +K K V+LV+ + K
Sbjct: 72 DQILAINGQALDQTITHQQAISILQKAK-DTVQLVIARGSLPQYYK 116
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A
2ain_A
Length = 106
Score = 108 bits (272), Expect = 4e-28
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 1300 EPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILL 1359
EP ++ V+ +K G +G SIV + + ++GI+VK++ G A G L GD++L
Sbjct: 9 EPEIITVTLKKQNG---MGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLS 65
Query: 1360 FNNEPLQGRTHAEAITIFKKTKQGLVELVLQ 1390
+ L G + A + +T +V L +
Sbjct: 66 VDGRSLVGLSQERAAELMTRTS-SVVTLEVA 95
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 108 bits (271), Expect = 5e-28
Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 1301 PTLVRVSFEKGPGKKSLGFSIVGGVDSP--KGEMGIFVKTIFPHGQAAESGLLVEGDEIL 1358
T++ V+ KGP K LGFSI GG+ + G+ I++ I G A + G L GD +L
Sbjct: 2 MTIMEVNLLKGP--KGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLL 59
Query: 1359 LFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNT 1393
NN LQ H EA+ K T + V +P +
Sbjct: 60 AVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPGS 94
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural
genomics, alternative splicing, cell cycle, cell
division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 108 bits (271), Expect = 1e-27
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 1293 RSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLV 1352
S + + +KG + LGFSI + G I+VK I P G A + G L
Sbjct: 21 GSYNTKKIGKRLNIQLKKGT--EGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLK 78
Query: 1353 EGDEILLFNNEPLQGRTHAEAITIFKKTKQ-GLVELVL 1389
GD ++ N L G++ E +++ + TK G V L++
Sbjct: 79 AGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLV 116
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling,
trafficking protein; HET: HIS; 1.80A {Rattus norvegicus}
PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 107 bits (269), Expect = 1e-27
Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
Query: 1301 PTLVRVSFEKGPGKKSLGFSIVGGVDSP--KGEMGIFVKTIFPHGQAAESGLLVEGDEIL 1358
++ + KGP K LGFSI GGV + G+ I+V I G A + G L GD++L
Sbjct: 2 EKIMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLL 59
Query: 1359 LFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTTEADSKE 1400
N+ L+ TH EA+T K T V L + T+ S+
Sbjct: 60 AVNSVSLEEVTHEEAVTALKNTS-DFVYLKVAKPTSMYISRH 100
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 107 bits (268), Expect = 2e-27
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 1299 CEPTLVRVSFEKGPGKKSLGFSIVGGVDSP--KGEMGIFVKTIFPHGQAAESGLLVEGDE 1356
T ++ +GP LGF+IVGG D + GI+V I +G AA G L EGD+
Sbjct: 4 YLVTEEEINLTRGPS--GLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDK 61
Query: 1357 ILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQ 1390
IL N + L+ H +A+ +F+ V L +Q
Sbjct: 62 ILSVNGQDLKNLLHQDAVDLFRNAG-YAVSLRVQ 94
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, unknown function; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 107 bits (268), Expect = 2e-27
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Query: 1296 PQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGD 1355
+ V E+GP LG ++ G+ + G G++++T+ P AA G L GD
Sbjct: 2 SSGSSGYVFTVELERGP--SGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGD 59
Query: 1356 EILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTTEADS 1398
IL N L G + A+ + + + + LV + + A
Sbjct: 60 RILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDVETAKK 102
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 106 bits (267), Expect = 3e-27
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 1287 ASRSAFRSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSP--KGEMGIFVKTIFPHGQ 1344
+ S P + R S + LG IVGG + P GE+G ++ I P G
Sbjct: 3 SGSSGHYIFPHA-RIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGS 61
Query: 1345 AAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTTEADSKEG 1401
A ++G L+EG ++L +N PL +T+ E +I + G E+ ++ + + G
Sbjct: 62 AEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQS-GEAEICVRLDLNMSGPSSG 117
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 106 bits (267), Expect = 3e-27
Identities = 38/110 (34%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 1283 HSLLASRSAFRSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPK--GEMGIFVKTIF 1340
H + T+V + KGP K LGFSI GGV + G+ I+V I
Sbjct: 5 HHHSSGVDLGTENLYFQSMTVVEIKLFKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKII 62
Query: 1341 PHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQ 1390
G A + G L GD +L+ NN L+ TH EA+ I K T +V L +
Sbjct: 63 DGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTS-EVVYLKVG 111
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 105 bits (264), Expect = 5e-27
Identities = 30/102 (29%), Positives = 42/102 (41%), Gaps = 3/102 (2%)
Query: 1290 SAFRSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSP-KGEMGIFVKTIFPHGQAAES 1348
S P + V K K LGFSI+ D I ++++ G A S
Sbjct: 3 SGSSGELALWSPEVKIVELVKDC--KGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERS 60
Query: 1349 GLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQ 1390
G L+ GD ++ N L + AEA+ I K GLV L +
Sbjct: 61 GGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGIC 102
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction,
structural genom structural genomics consortium, SGC,
signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A
3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Length = 102
Score = 102 bits (257), Expect = 4e-26
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 1306 VSFEKGPGKKSLGFSIVGGVDSPK--GEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNE 1363
+ E+G LGFSI GG+D+P + GIF+ I P G AA G L D +L N
Sbjct: 8 IVLERGNS--GLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEV 65
Query: 1364 PLQGRTHAEAITIFKKTKQGLVELVLQ 1390
+ H+ A+ K+ +V LV++
Sbjct: 66 DVSEVVHSRAVEALKEAG-PVVRLVVR 91
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein
25, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 120
Score = 103 bits (258), Expect = 6e-26
Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 1287 ASRSAFRSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSP--KGEMGIFVKTIFPHGQ 1344
+S S+ + T ++ +GP LGF+IVGG D + GI+V I +G
Sbjct: 2 SSGSSGMNGRVDYLVTEEEINLTRGPS--GLGFNIVGGTDQQYVSNDSGIYVSRIKENGA 59
Query: 1345 AAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQ 1390
AA G L EGD+IL N + L+ H +A+ +F+ V L +Q
Sbjct: 60 AALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAG-YAVSLRVQ 104
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; PDZ, E6 binding, tumor suppressor, peptide
binding protein; 2.15A {Mus musculus}
Length = 85
Score = 101 bits (253), Expect = 1e-25
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 1304 VRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNE 1363
+ K + GF++VGG + + + +K++ G AA G + GD I+ N+
Sbjct: 2 IHTKLRKSS--RGFGFTVVGGDEP---DEFLQIKSLVLDGPAALDGKMETGDVIVSVNDT 56
Query: 1364 PLQGRTHAEAITIFKKTKQG-LVELVL 1389
+ G THA+ + IF+ G V+L L
Sbjct: 57 CVLGHTHAQVVKIFQSIPIGASVDLEL 83
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight junctions,
PATJ, structural genomics; NMR {Homo sapiens}
Length = 128
Score = 102 bits (255), Expect = 1e-25
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 1306 VSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPL 1365
+ E+ LGFS+V G++ IFVK + P A L E D+IL N+ PL
Sbjct: 29 IDIERPS-TGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPL 87
Query: 1366 -QGRTHAEAITIFKKTKQGLVELVLQ 1390
Q +H +AI + ++T G + L++
Sbjct: 88 DQNISHQQAIALLQQTT-GSLRLIVA 112
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 100 bits (252), Expect = 2e-25
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 1306 VSFEKGPGKKSLGFSIVGGVDSPKG--EMGIFVKTIFPHGQAAESGLLVEGDEILLFNNE 1363
V + SLG SI G D GI+VK++ P AA G + D+IL ++
Sbjct: 16 VELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDV 75
Query: 1364 PLQGRTHAEAITIFKKTKQGLVELVLQ 1390
+QG ++ + + + V L+L
Sbjct: 76 NVQGMAQSDVVEVLRNAG-NPVRLLLI 101
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Length = 108
Score = 100 bits (252), Expect = 3e-25
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 1300 EPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILL 1359
++ V+ LG SIVG + G+ GI++ +I G A G + GD +L
Sbjct: 3 HMNIITVTLNMEKYN-FLGISIVGQSNER-GDGGIYIGSIMKGGAVAADGRIEPGDMLLQ 60
Query: 1360 FNNEPLQGRTHAEAITIFKKT--KQGLVELVL 1389
N+ + ++ +A+ + + K G + L +
Sbjct: 61 VNDMNFENMSNDDAVRVLRDIVHKPGPIVLTV 92
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; PDZ domain, ATP-binding, cell junction, cell membrane;
NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 101 bits (253), Expect = 3e-25
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 1288 SRSAFRSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAE 1347
+ F P + + K + GF++VGG + + + +K++ G AA
Sbjct: 4 GKPFFTRNPSELKGKFIHTKLRKSS--RGFGFTVVGGDEP---DEFLQIKSLVLDGPAAL 58
Query: 1348 SGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQG-LVELVLQ 1390
G + GD I+ N+ + G THA+ + IF+ G V+L L
Sbjct: 59 DGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELC 102
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1
interacting protein 1, PDZ domain, structural genomics;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 101 bits (253), Expect = 3e-25
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Query: 1287 ASRSAFRSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAA 1346
S F + T + + +K GF+I+GG + + + VK++ P G AA
Sbjct: 4 GSSGLFTRDASQLKGTFLSTTLKKSN--MGFGFTIIGGDEP---DEFLQVKSVIPDGPAA 58
Query: 1347 ESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQG-LVELVL 1389
+ G + GD I+ N + G THA+ + +F+ G V LVL
Sbjct: 59 QDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVL 102
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 101 bits (254), Expect = 3e-25
Identities = 28/99 (28%), Positives = 39/99 (39%), Gaps = 4/99 (4%)
Query: 1293 RSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLV 1352
V + G LG +VGG + G + F+ + A G L
Sbjct: 29 GRILLNKRLKDGSVPRDSGAM---LGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLR 85
Query: 1353 EGDEILLFNNEPLQGRTHAEAITIFKKTKQ-GLVELVLQ 1390
GDE+L +N LQG T E I ++K VELV+
Sbjct: 86 PGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVS 124
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics,
PDZ domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB:
2koh_A 2k1z_A 2k20_A
Length = 127
Score = 101 bits (253), Expect = 3e-25
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 1290 SAFRSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKG-EMGIFVKTIFPHGQAAES 1348
+ ++ E + + G LG S+ G G ++GIF+K+I G A +
Sbjct: 13 DCYALSLESSEQLTLEIPLND-SGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKD 71
Query: 1349 GLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQ------GLVELVL 1389
G L D+++ N E L G+++ EA+ +++ G+++LV+
Sbjct: 72 GRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVI 118
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 100 bits (252), Expect = 3e-25
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 8/105 (7%)
Query: 1300 EPTLVRVSFEKGPGKKSLGFSIVGGVDSPKG------EMGIFVKTIFPHGQAAESGLLVE 1353
P L + +K PG+ LG SI GG G + GIF+ + P G A G L
Sbjct: 7 GPGLRELCIQKAPGE-RLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRV 65
Query: 1354 GDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTTEADS 1398
G +L N + L G TH EA+ + + + +++ S
Sbjct: 66 GLRLLEVNQQSLLGLTHGEAVQLLRSVG-DTLTVLVCDGFESGPS 109
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 99.8 bits (249), Expect = 8e-25
Identities = 33/106 (31%), Positives = 44/106 (41%), Gaps = 4/106 (3%)
Query: 1292 FRSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLL 1351
R R L + EK LG S+ G D + M IFV I P G AA G +
Sbjct: 15 IRQRYADLPGELHIIELEKDKN--GLGLSLAGNKDRSR--MSIFVVGINPEGPAAADGRM 70
Query: 1352 VEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTTEAD 1397
GDE+L NN+ L GR+H A I K + + ++
Sbjct: 71 RIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLVFIRNEDAVNQ 116
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 107
Score = 98.2 bits (245), Expect = 2e-24
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 1304 VRVSFEKGPGKKSLGFSIVGGVDS-----PKGEMGIFVKTIFPHGQAAESGLLVEGDEIL 1358
+ + + G SLGF+I+GG S GIFV I G AA+ G L D I+
Sbjct: 10 LTLVLHRDSG--SLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRII 67
Query: 1359 LFNNEPLQGRTHAEAITIFKKTKQGLVELVLQ 1390
N L TH +A+ FK K+ + + +
Sbjct: 68 EVNGRDLSRATHDQAVEAFKTAKEP-IVVQVL 98
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 98.3 bits (245), Expect = 2e-24
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 1294 SRPQTCEPTLVR-VSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLV 1352
+ + E + V + + SL ++ GGVDSP G + V ++ G A G +V
Sbjct: 6 ATMFSPEQIAGKDVRLLRIKKEGSLDLALEGGVDSPVG--KVVVSAVYEGGAAERHGGVV 63
Query: 1353 EGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELV 1388
+GDEI+ N + + T AEA +K + +
Sbjct: 64 KGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWI 99
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus
interaction, structural genomics consortium, synaptosome,
tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 97.0 bits (242), Expect = 4e-24
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 1306 VSFEKGPGKKSLGFSIVGGVDSPKGE-MGIFVKTIFPHGQAAESGLLVEGDEILLFNNEP 1364
V K + LG +I G + K E GIFVK+I G + GD+I+ +
Sbjct: 8 VELTKNV--QGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTN 65
Query: 1365 LQGRTHAEAITIFKKTKQGLVELVLQ 1390
LQG T+ +A+ + + T V L L
Sbjct: 66 LQGFTNQQAVEVLRHTG-QTVLLTLM 90
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF),
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.2
Length = 119
Score = 97.9 bits (244), Expect = 4e-24
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 2/117 (1%)
Query: 1290 SAFRSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESG 1349
S+ S + + V+ LGFS+ GG D I V +FP+G A++ G
Sbjct: 2 SSGSSGATLKQLDGIHVTILHKEEGAGLGFSLAGGADLEN--KVITVHRVFPNGLASQEG 59
Query: 1350 LLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTTEADSKEGLNLQP 1406
+ +G+E+L N + L+G TH +A+ I ++ ++ +++ T + + P
Sbjct: 60 TIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRKLTPEAMPDLNSSGP 116
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 96.6 bits (241), Expect = 4e-24
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 1306 VSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPL 1365
+ + GF I+GG + I++ I P G A G L GDE++ + P+
Sbjct: 6 IFLWRKET--GFGFRILGGNEPG---EPIYIGHIVPLGAADTDGRLRSGDELISVDGTPV 60
Query: 1366 QGRTHAEAITIFKKTKQ-GLVELVLQ 1390
G++H + + ++ + G V L ++
Sbjct: 61 IGKSHQLVVQLMQQAAKQGHVNLTVR 86
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 97.0 bits (242), Expect = 5e-24
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 1306 VSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPL 1365
V +G G ++ GG D G+ + V+ + G A G L GD +L N E
Sbjct: 15 VELVRGYA--GFGLTLGGGRDVA-GDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGEST 71
Query: 1366 QGRTHAEAITIFKKTKQGLVELVLQ 1390
QG THA+A+ + + LV++
Sbjct: 72 QGLTHAQAVERIRAGGP-QLHLVIR 95
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics,
structural genomics consortium, SGC; 1.50A {Homo sapiens}
Length = 98
Score = 96.6 bits (241), Expect = 7e-24
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 1306 VSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPL 1365
+ KG LG SIVGG D+ G I + ++ G A + G L GD+IL N L
Sbjct: 8 IEISKGRT--GLGLSIVGGSDTLLG--AIIIHEVYEEGAACKDGRLWAGDQILEVNGIDL 63
Query: 1366 QGRTHAEAITIFKKTKQGLVELVLQPNTTEADSK 1399
+ TH EAI + ++T Q + + + ++
Sbjct: 64 RKATHDEAINVLRQTPQRVRLTLYRDEAPYKSTR 97
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 96.7 bits (241), Expect = 9e-24
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 1300 EPTLVRVSFEKGPGKKSLGFSIVGGV---DSPKGEMGIFVKTIFPHGQAAESGLLVEGDE 1356
L V EK + LG SI+G D ++GIFVKT+ G A G + D
Sbjct: 2 HMELFPVELEKDS--EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDL 59
Query: 1357 ILLFNNEPLQGRTHAEAITIFKKTKQGLVELVL 1389
++ + L G T + A ++ + TK G V ++
Sbjct: 60 LVEVDGTSLVGVTQSFAASVLRNTK-GRVRFMI 91
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 105
Score = 96.2 bits (240), Expect = 1e-23
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 1306 VSFEKGPGKKSLGFSIVGGVDSP---KGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNN 1362
+ LGFSI GG S G+ GIFV I G A +G L GD +L N
Sbjct: 11 ACLARSER--GLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSING 68
Query: 1363 EPLQGRTHAEAITIFKKTKQGLVELVLQ 1390
+ H A+++ + L+L+
Sbjct: 69 VDVTEARHDHAVSLLTAAS-PTIALLLE 95
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 96.0 bits (239), Expect = 1e-23
Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 6/103 (5%)
Query: 1290 SAFRSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESG 1349
S+ S RV LG I+GG++ +G +++ + P G + G
Sbjct: 2 SSGSSGSPLDRDPAFRVITVTKE--TGLGLKILGGINRNEGP-LVYIHEVIPGGDCYKDG 58
Query: 1350 LLVEGDEILLFNNEPLQGRTHAEAITIFKKTK---QGLVELVL 1389
L GD+++ N E + G + EA +I + K + E+
Sbjct: 59 RLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAF 101
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics
in europe, spine, structural genomics, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 95.9 bits (239), Expect = 1e-23
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 8/105 (7%)
Query: 1300 EPTLVRVSFEKGPGKKSLGFSIV-----GGVDSPKGEMGIFVKTIFPHGQAAESGLLVEG 1354
+ V K SLG S+ GGV++ GI+VK + P G A G + +G
Sbjct: 7 PGDIFEVELAKNDN--SLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKG 64
Query: 1355 DEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTTEADSK 1399
D +L N L+G TH +A+ + T Q +V L+L+ + +
Sbjct: 65 DRVLAVNGVSLEGATHKQAVETLRNTGQ-VVHLLLEKGQSPTSKE 108
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic
reticulum, postsynaptic membrane, membrane, MEMB protein;
1.5A {Homo sapiens}
Length = 97
Score = 95.4 bits (238), Expect = 2e-23
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 1304 VRVSFEKGPGKKSLGFSIVGGVDSPKGE-MGIFVKTIFPHGQAAESGLLVEGDEILLFNN 1362
V V+ K + GF I GG + + + + ++ P G A G + GD +L +
Sbjct: 5 VEVTLHKEGN--TFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDG 62
Query: 1363 EPLQGRTHAEAITIFKKTKQGLVELVLQ 1390
L G THAEA++I K+ Q L+++
Sbjct: 63 IRLLGTTHAEAMSILKQCGQ-EAALLIE 89
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 95.5 bits (238), Expect = 2e-23
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 10/100 (10%)
Query: 1297 QTCEPTLVRVSFEKGPGKKSLGFSIVGGVD------SPKGEMGIFVKTIFPHGQAAESGL 1350
Q+ +P V + + P K SLG SIVGG + + GIF+K + A ++G
Sbjct: 1 QSMQPRRVEL--WREPSK-SLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGT 57
Query: 1351 LVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQ 1390
L GD I+ + L+ +H +A+ +K V ++Q
Sbjct: 58 LKPGDRIVEVDGMDLRDASHEQAVEAIRKAG-NPVVFMVQ 96
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 96.0 bits (239), Expect = 2e-23
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 10/114 (8%)
Query: 1283 HSLLASRSAFRSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDS------PKGEMGIFV 1336
HS Q+ +P RV + P K SLG SIVGG + GIF+
Sbjct: 7 HSSGVDLGTENLYFQSMQP--RRVELWREPSK-SLGISIVGGRGMGSRLSNGEVMRGIFI 63
Query: 1337 KTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQ 1390
K + A ++G L GD I+ + L+ +H +A+ +K V ++Q
Sbjct: 64 KHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGN-PVVFMVQ 116
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 107
Score = 95.1 bits (237), Expect = 2e-23
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 1300 EPTLVRVSFEKGPGKKSLGFSIVG---GVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDE 1356
L V EK LG SI+G G D+ ++GIFVKT+ G A G + D+
Sbjct: 7 GLELFPVELEKDE--DGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQ 64
Query: 1357 ILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTTEADS 1398
I+ + L G T A T+ + TK + ++ + + S
Sbjct: 65 IVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGREKPSGPSS 106
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 94.6 bits (236), Expect = 3e-23
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 1304 VRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNE 1363
+ + +K PGK LG SIVG + + G+FV I G A G L++GD+IL+ N E
Sbjct: 6 LTIGLQKKPGK-GLGLSIVGK----RNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGE 60
Query: 1364 PLQGRTHAEAITIFKKTKQGLVELVLQ 1390
++ T + K + G V L +
Sbjct: 61 DVRNATQEAVAALLKCS-LGTVTLEVG 86
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus musculus}
SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 93.9 bits (234), Expect = 4e-23
Identities = 31/93 (33%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 1298 TCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEI 1357
+ + V V K LG SI GG ++ M I + IF A ++ L GD I
Sbjct: 2 SLQRRRVTV--RKADAG-GLGISIKGGRENK---MPILISKIFKGLAADQTEALFVGDAI 55
Query: 1358 LLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQ 1390
L N E L TH EA+ KKT V L ++
Sbjct: 56 LSVNGEDLSSATHDEAVQALKKTG-KEVVLEVK 87
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1
interacting protein 1, PDZ domain, structural genomics;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 94.3 bits (235), Expect = 4e-23
Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 6/100 (6%)
Query: 1300 EPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILL 1359
+ V + GF I+GG + I + + G A G L GDE++
Sbjct: 7 GYKELDVHLRRMES--GFGFRILGGDEPG---QPILIGAVIAMGSADRDGRLHPGDELVY 61
Query: 1360 FNNEPLQGRTHAEAITIFKKTKQ-GLVELVLQPNTTEADS 1398
+ P+ G+TH I + + G V L ++ S
Sbjct: 62 VDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKVLSGPS 101
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein;
1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 93.9 bits (234), Expect = 5e-23
Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Query: 1305 RVSFEKGPGKKSLGFSIVGGVDSP---KGEMGIFVKTIFPHGQAAESGLLVEGDEILLFN 1361
V+ +K K S G IV G GIF+K I P A G L GD IL N
Sbjct: 8 MVTLDKTGKK-SFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLN 66
Query: 1362 NEPLQGRTHAEAITIFKKTKQGLVELVLQP 1391
+ ++ T I + K+ +EL +Q
Sbjct: 67 GKDVRNSTEQAVIDLIKEAD-FKIELEIQT 95
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 93.9 bits (234), Expect = 6e-23
Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 1294 SRPQTCEPTLVR-VSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLV 1352
S + + V EKG GFSI GG + M ++V + G A +G +
Sbjct: 2 SSGSSGQDFDYFTVDMEKGAK--GFGFSIRGGREYK---MDLYVLRLAEDGPAIRNGRMR 56
Query: 1353 EGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTTEADS 1398
GD+I+ N E + THA AI + K + V L+L+ T S
Sbjct: 57 VGDQIIEINGESTRDMTHARAIELIKSGGR-RVRLLLKRGTGSGPS 101
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 93.1 bits (232), Expect = 8e-23
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Query: 1303 LVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNN 1362
+++V+ K + LG +V D P G+F+ + G AA+ G L D +L N
Sbjct: 4 ILQVALHKRDSGEQLGIKLVRRTDEP----GVFILDLLEGGLAAQDGRLSSNDRVLAING 59
Query: 1363 EPLQGRTHAEAITIFKKTKQGLVELVL 1389
L+ T A I + + V L +
Sbjct: 60 HDLKYGTPELAAQIIQASG-ERVNLTI 85
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 93.6 bits (233), Expect = 8e-23
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Query: 1290 SAFRSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSP---KGEMGIFVKTIFPHGQAA 1346
S P E + ++ + G LG SI GG S + GIF+ + G AA
Sbjct: 3 SGSSGEPARIEEEELTLTILRQTG--GLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAA 60
Query: 1347 ESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQ 1390
+G+ V GD++L N LQG H EA+ + V++ +
Sbjct: 61 RAGVRV-GDKLLEVNGVALQGAEHHEAVEALRGAG-TAVQMRVW 102
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation,
leucine-rich repeat, alternative splicing, cytoplasm,
circletail, coiled coil; 1.30A {Homo sapiens}
Length = 97
Score = 93.1 bits (232), Expect = 9e-23
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 1306 VSFEKGPGKKSLGFSIVGGVDSP---KGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNN 1362
++ + G LG SI GG S + GIF+ + G AA +G+ V GD++L N
Sbjct: 7 LTILRQTG--GLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRV-GDKLLEVNG 63
Query: 1363 EPLQGRTHAEAITIFKKTKQGLVELVLQ 1390
LQG H EA+ + V++ +
Sbjct: 64 VALQGAEHHEAVEALRGAG-TAVQMRVW 90
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 113
Score = 93.2 bits (232), Expect = 1e-22
Identities = 39/111 (35%), Positives = 46/111 (41%), Gaps = 7/111 (6%)
Query: 1290 SAFRSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESG 1349
S RP ++ KG LGF+IVGG D GIFV I G A SG
Sbjct: 3 SGSSGRPGGDAREPRKIILHKGST--GLGFNIVGGEDG----EGIFVSFILAGGPADLSG 56
Query: 1350 LLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTTEADSKE 1400
L GD IL N L+ TH +A K+ Q V +V Q E E
Sbjct: 57 ELRRGDRILSVNGVNLRNATHEQAAAALKRAGQ-SVTIVAQYRPEEYSRFE 106
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 92.5 bits (230), Expect = 2e-22
Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 7/115 (6%)
Query: 1290 SAFRSRPQTCEPT---LVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAA 1346
S+ S P TC + + KG LG SIVGG D+P I + ++ G AA
Sbjct: 2 SSGSSGPATCPIVPGQEMIIEISKGR--SGLGLSIVGGKDTPLN--AIVIHEVYEEGAAA 57
Query: 1347 ESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTTEADSKEG 1401
G L GD+IL N L+ +H EAIT ++T Q + +V + D + G
Sbjct: 58 RDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQKVRLVVYRDEAHYRDEESG 112
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; transferase, STRU genomics, structural genomics
consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo
sapiens}
Length = 112
Score = 92.4 bits (230), Expect = 3e-22
Identities = 31/113 (27%), Positives = 45/113 (39%), Gaps = 7/113 (6%)
Query: 1283 HSLLASRSAFRSRPQTCEPTLVR-VSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFP 1341
H +S + + V E+G GFS+ GG + M ++V +
Sbjct: 4 HHHHSSGVDLGTENLYFQSMDFYTVELERGAK--GFGFSLRGGREYN---MDLYVLRLAE 58
Query: 1342 HGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTT 1394
G A SG + GDEIL N E + H+ AI + K V L L+ T
Sbjct: 59 DGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGG-RRVRLFLKRGET 110
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 91.3 bits (227), Expect = 4e-22
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 1306 VSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPL 1365
VS + + LGFSI GG + +GI+V + P A + GL V GD+IL N++ L
Sbjct: 12 VSLRRAKAHEGLGFSIRGGSEHG---VGIYVSLVEPGSLAEKEGLRV-GDQILRVNDKSL 67
Query: 1366 QGRTHAEAITIFKKTKQGLVELV 1388
THAEA+ K +K+ ++ +
Sbjct: 68 ARVTHAEAVKALKGSKKLVLSVY 90
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 93
Score = 91.2 bits (227), Expect = 5e-22
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 1306 VSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPL 1365
V K LGF+I+GG + I++ + P G A G L GD++L N +
Sbjct: 9 VELPKTDE--GLGFNIMGGKEQN---SPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSV 63
Query: 1366 QGRTHAEAITIFKKTKQGLVELVLQ 1390
+G H +A+ + K + G V+LV++
Sbjct: 64 EGEQHEKAVELLKAAQ-GSVKLVVR 87
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity
ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A
2h3m_A 2rrm_A
Length = 107
Score = 91.3 bits (227), Expect = 5e-22
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 1306 VSFEKGPGKKSLGFSIVGGVDSP---KGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNN 1362
V+ + PG G +I GG D+P GE I + + G A G L E D + + N
Sbjct: 11 VTLHRAPGF-GFGIAISGGRDNPHFQSGETSIVISDVLKGGPA--EGQLQENDRVAMVNG 67
Query: 1363 EPLQGRTHAEAITIFKKTKQGLVELVLQ 1390
+ HA A+ +K+ + ++ ++
Sbjct: 68 VSMDNVEHAFAVQQLRKSGK-NAKITIR 94
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 124
Score = 91.8 bits (228), Expect = 6e-22
Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 3/103 (2%)
Query: 1287 ASRSAFRSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAA 1346
S E L V + + LG ++ D ++GI++ I P+ AA
Sbjct: 4 GSSGDIHQEMDREELELEEVDLYRMNSQDKLGLTVCYRTDDE-DDIGIYISEIDPNSIAA 62
Query: 1347 ESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVL 1389
+ G + EGD I+ N +Q R A A + + L++
Sbjct: 63 KDGRIREGDRIIQINGIEVQNREEAVA--LLTSEENKNFSLLI 103
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 91.0 bits (226), Expect = 8e-22
Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 6/109 (5%)
Query: 1283 HSLLASRSAFRSRPQTCEPTLVR-VSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFP 1341
H +S + + + V+ +K +G SI GG +++ +F
Sbjct: 4 HHHHSSGVDLGTENLYFQSMVPGKVTLQKDAQN-LIGISIGGGAQY---CPCLYIVQVFD 59
Query: 1342 HGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQ 1390
+ AA G + GDEI N ++G+T E + ++ K G V +
Sbjct: 60 NTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK-GEVTIHYN 107
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 91.4 bits (227), Expect = 9e-22
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 1300 EPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILL 1359
+V+ +K +G SI GG +++ +F + AA G + GDEI
Sbjct: 17 PTVPGKVTLQKDAQN-LIGISIGGGAQY---CPCLYIVQVFDNTPAALDGTVAAGDEITG 72
Query: 1360 FNNEPLQGRTHAEAITIFKKTKQGLVELVLQ 1390
N ++G+T E + ++ K G V +
Sbjct: 73 VNGRSIKGKTKVEVAKMIQEVK-GEVTIHYN 102
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 91.0 bits (226), Expect = 9e-22
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 7/104 (6%)
Query: 1290 SAFRSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSP---KGEMGIFVKTIFPHGQAA 1346
S+ S + V+ +K + G ++ GG D+P GE I + + P G A
Sbjct: 2 SSGSSGMEEVIWEQYTVTLQKDSKR-GFGIAVSGGRDNPHFENGETSIVISDVLPGGPA- 59
Query: 1347 ESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQ 1390
GLL E D +++ N P++ H+ A+ +K+ + + +V++
Sbjct: 60 -DGLLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGK-IAAIVVK 101
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 90.6 bits (225), Expect = 1e-21
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
Query: 1287 ASRSAFRSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSP------KGEMGIFVKTIF 1340
+S S+ + P +V + + P SLG SIVGG + GIF+K +
Sbjct: 2 SSGSSGPNFSHWGPPRIVEI--FREPNV-SLGISIVGGQTVIKRLKNGEELKGIFIKQVL 58
Query: 1341 PHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQ 1390
A ++ L GD+IL + LQ +H+EA+ K V ++Q
Sbjct: 59 EDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNAGN-PVVFIVQ 107
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion;
1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 90.6 bits (225), Expect = 2e-21
Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 10/111 (9%)
Query: 1283 HSLLASRSAFRSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPH 1342
HS + + + P++ V F KG +G + GG D +GIFV +
Sbjct: 10 HSSGGTENLYFQGHMILRPSMKLVKFRKGDS---VGLRLAGGND-----VGIFVAGVLED 61
Query: 1343 GQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGL-VELVLQPN 1392
AA+ GL GD+IL NN EA+ +G V ++ Q
Sbjct: 62 SPAAKEGLEE-GDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKK 111
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 89.3 bits (222), Expect = 2e-21
Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 9/104 (8%)
Query: 1287 ASRSAFRSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAA 1346
+S S+ + P +V + +K PG LGF+I GG S ++GIF+ + P A
Sbjct: 2 SSGSSGNNELTQFLPRIVTL--KKPPGA-QLGFNIRGGKAS---QLGIFISKVIPDSDAH 55
Query: 1347 ESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQ 1390
+GL GD++L N+ Q H++A+ I K ++ + + ++
Sbjct: 56 RAGLQE-GDQVLAVNDVDFQDIEHSKAVEILKTARE--ISMRVR 96
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing,
cell junction, cell membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB:
3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 89.3 bits (222), Expect = 3e-21
Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 9/100 (9%)
Query: 1291 AFRSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGL 1350
EP + + +G LGF+IVGG + GIF+ I G A SG
Sbjct: 2 GLGEEDIPREPRRIVI--HRGST--GLGFNIVGG----EXGEGIFISFILAGGPADLSGE 53
Query: 1351 LVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQ 1390
L +GD+IL N L+ +H +A K V ++ Q
Sbjct: 54 LRKGDQILSVNGVDLRNASHEQAAIALKNA-GQTVTIIAQ 92
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding
protein, membrane, sensory transduction, vision; 1.55A
{Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Length = 96
Score = 88.5 bits (220), Expect = 4e-21
Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 8/86 (9%)
Query: 1304 VRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNE 1363
V K GK LG S+ E+G + + L GD I FN +
Sbjct: 10 FNVDLMKKAGK-ELGLSLSPN------EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGD 62
Query: 1364 PLQGRTHAEAITIFKKTKQGLVELVL 1389
L+G + +FK G V + +
Sbjct: 63 ALEGLPFQVSYALFKGA-NGKVSMEV 87
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 89.0 bits (221), Expect = 4e-21
Identities = 30/102 (29%), Positives = 41/102 (40%), Gaps = 9/102 (8%)
Query: 1290 SAFRSRPQTCEPTLVR-VSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAES 1348
S+ S P+T V V LGF IVGG G+ V+TI P G A
Sbjct: 2 SSGSSGPETVCWGHVEEVELINDG--SGLGFGIVGG-----KTSGVVVRTIVPGGLADRD 54
Query: 1349 GLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQ 1390
G L GD IL +QG T + + + V +++
Sbjct: 55 GRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCG-NSVRMLVA 95
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide
binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1
PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 89.0 bits (221), Expect = 5e-21
Identities = 34/112 (30%), Positives = 45/112 (40%), Gaps = 9/112 (8%)
Query: 1290 SAFRSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESG 1349
EP + +G LGF+IVGG D GIF+ I G A SG
Sbjct: 4 EFLGEEDIPREPRRIV--IHRGST--GLGFNIVGGEDG----EGIFISFILAGGPADLSG 55
Query: 1350 LLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTTEADSKEG 1401
L +GD+IL N L+ +H +A K Q V ++ Q E E
Sbjct: 56 ELRKGDQILSVNGVDLRNASHEQAAIALKNAGQ-TVTIIAQYKPEEYSRFEA 106
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural
protein-hydrolase complex, peptide binding protei; NMR
{Homo sapiens}
Length = 112
Score = 87.9 bits (218), Expect = 9e-21
Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 5/108 (4%)
Query: 1283 HSLLASRSAFRSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPH 1342
H + R + +V K + LG SI GG + + I + I P
Sbjct: 8 HHHSSGHIEGRHMENLYFQGIRKVLLLKEDHE-GLGISITGGKEHG---VPILISEIHPG 63
Query: 1343 GQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQ 1390
A G L GD IL N L+ H EA+TI + + G +E +
Sbjct: 64 QPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQR-GEIEFEVV 110
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform
B; GOPC PDZ domain, structural protein; NMR {Homo
sapiens}
Length = 103
Score = 87.4 bits (217), Expect = 1e-20
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 1305 RVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEP 1364
+V K + LG SI GG + + I + I P A G L GD IL N
Sbjct: 12 KVLLLKEDHE-GLGISITGGKEHG---VPILISEIHPGQPADRCGGLHVGDAILAVNGVN 67
Query: 1365 LQGRTHAEAITIFKKTKQGLVELVLQPNTTE 1395
L+ H EA+TI + + G +E + E
Sbjct: 68 LRDTKHKEAVTILSQQR-GEIEFEVVYVALE 97
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide
binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 87.1 bits (216), Expect = 1e-20
Identities = 26/106 (24%), Positives = 37/106 (34%), Gaps = 10/106 (9%)
Query: 1306 VSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPL 1365
V K GK LG S+ E+G + + L GD I FN + L
Sbjct: 6 VDLMKKAGK-ELGLSLSPN------EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDAL 58
Query: 1366 QGRTHAEAITIFKKTKQGLVELVLQPNTTEADSKEGLNLQPRLIPR 1411
+G +FK + V +P S + PRL+ R
Sbjct: 59 EGLPFQVCYALFKGANGKVSMEVTRPKPGSGGSGSLV---PRLLRR 101
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 86.7 bits (215), Expect = 2e-20
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 10/96 (10%)
Query: 1304 VRVSFEKGPGKKSLGFSIVGGVDSPK-----GEMGIFVKTIFPHGQAAESGLLVEGDEIL 1358
+RV EK P LGFSI GGV + GIFV + P G A+ LL GD+I+
Sbjct: 5 IRVRVEKDPE---LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKII 59
Query: 1359 LFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTT 1394
N H +A+++ K + + ++++ ++
Sbjct: 60 QANGYSFINIEHGQAVSLLKTFQNTVELIIVREVSS 95
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A
{Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 85.4 bits (212), Expect = 4e-20
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
Query: 1300 EPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILL 1359
+ V ++ G LG +I G + I + ++ G A +G + GD IL
Sbjct: 3 GAIIYTVELKRYGG--PLGITISGTEEP---FDPIIISSLTKGGLAERTGAIHIGDRILA 57
Query: 1360 FNNEPLQGRTHAEAITIFKKTKQGLVELVLQP 1391
N+ L+G+ +EAI + + V L ++
Sbjct: 58 INSSSLKGKPLSEAIHLLQMAG-ETVTLKIKK 88
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter
usage, alternative splicing, cell junction, cell
membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 84.7 bits (210), Expect = 6e-20
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 10/92 (10%)
Query: 1303 LVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNN 1362
++ V K + + + + G IFVK + G A + G L EGD IL N
Sbjct: 1 MIGVLLMKS--RANEEYGLRLGS-------QIFVKEMTRTGLATKDGNLHEGDIILKING 51
Query: 1363 EPLQGRTHAEAITIFKKTKQGLVELVLQPNTT 1394
+ + +A + +K++ G ++LV+ +
Sbjct: 52 TVTENMSLTDARKLIEKSR-GKLQLVVLRDLE 82
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 88.3 bits (219), Expect = 7e-20
Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 4/112 (3%)
Query: 1288 SRSAFRSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVD-SPKGEMGIFVKTIFPHGQAA 1346
+ + V V+ K + GF I GG + + + P G A
Sbjct: 92 ELPPVSIQGSSVMFRTVEVTLHKEGN--TFGFVIRGGAHDDRNKSRPVVITCVRPGGPAD 149
Query: 1347 ESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTTEADS 1398
G + GD +L + L G THAEA++I K+ L+++ + + DS
Sbjct: 150 REGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCG-QEATLLIEYDVSVMDS 200
Score = 82.1 bits (203), Expect = 1e-17
Identities = 26/116 (22%), Positives = 42/116 (36%), Gaps = 6/116 (5%)
Query: 1296 PQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGD 1355
T+V + K G +LG ++ GG+D + V + G AA S L GD
Sbjct: 3 GSFKGSTVVEL--MKKEGT-TLGLTVSGGIDK---DGKPRVSNLRQGGIAARSDQLDVGD 56
Query: 1356 EILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTTEADSKEGLNLQPRLIPR 1411
I N L H E I++ K + +V V + + + +
Sbjct: 57 YIKAVNGINLAKFRHDEIISLLKNVGERVVLEVEYELPPVSIQGSSVMFRTVEVTL 112
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB:
3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 86.2 bits (213), Expect = 1e-19
Identities = 31/131 (23%), Positives = 54/131 (41%), Gaps = 12/131 (9%)
Query: 1283 HSLLASRSAFRSRPQTCEPTLVRVSFEKGP--GKKSLGFSIVGGVDSP---------KGE 1331
H +S + + + RV K LGFSI GG+D K +
Sbjct: 4 HHHHSSGVDLGTENLYFQSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTD 63
Query: 1332 MGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQP 1391
GI+V + G A +GL + GD+I+ N + TH +A K + +V L++
Sbjct: 64 KGIYVTRVSEGGPAEIAGLQI-GDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTR 122
Query: 1392 NTTEADSKEGL 1402
+ + ++ +
Sbjct: 123 QSLQKAVQQSM 133
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens} PDB:
3nfl_A 2vph_A
Length = 107
Score = 84.9 bits (210), Expect = 1e-19
Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 8/103 (7%)
Query: 1294 SRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAES-GLLV 1352
LV + + GF++ GG D +M + V + P A L
Sbjct: 9 PNGGIPHDNLVLIRMKPDENG-RFGFNVKGGYDQ---KMPVIVSRVAPGTPADLCVPRLN 64
Query: 1353 EGDEILLFNNEPLQGRTHAEAITIFKKTKQ---GLVELVLQPN 1392
EGD+++L N + TH + + K + + G + L+++PN
Sbjct: 65 EGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPN 107
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal
peptide complex, high affnity ligand, signaling protein;
NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Length = 103
Score = 84.8 bits (210), Expect = 1e-19
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 1300 EPTLVRVSFEKGPGKKSLGFSIVGGVDSPK-----GEMGIFVKTIFPHGQAAESGLLVEG 1354
+RV EK P LGFSI GGV + GIFV + P G A+ LL G
Sbjct: 9 AKQEIRVRVEKDPE---LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPG 63
Query: 1355 DEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTT 1394
D+I+ N H +A+++ K + + ++++ ++
Sbjct: 64 DKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREVSS 103
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB:
3zrt_A 2ka9_A
Length = 196
Score = 87.5 bits (217), Expect = 1e-19
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 1298 TCEPTLVRVSFEKGPGKKSLGFSIVGGVDSP--KGEMGIFVKTIFPHGQAAESGLLVEGD 1355
+ ++ E+G LGFSI GG D+P + IF+ I P G AA+ G L D
Sbjct: 1 SGSMEYEEITLERGNS--GLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVND 58
Query: 1356 EILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTTEADSKEGLNLQP 1406
IL N ++ TH+ A+ K+ +V L + A+ + L
Sbjct: 59 SILFVNEVDVREVTHSAAVEALKEAG-SIVRLYVMRRKPPAEKVMEIKLIK 108
Score = 86.7 bits (215), Expect = 3e-19
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Query: 1297 QTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSP--KGEMGIFVKTIFPHGQAAESGLLVEG 1354
+ P + + G K LGFSI GGV + G+ I+V I G A + G L G
Sbjct: 93 RRKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIG 152
Query: 1355 DEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTTEADS 1398
D+IL N+ L+ H +A+ K T + V +P+ E +
Sbjct: 153 DKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSNAETMA 196
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density,
glutametergic receptors, carbohydrate metabolism, cycle,
cell division; HET: MES; 1.85A {Rattus norvegicus} PDB:
3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 86.5 bits (214), Expect = 1e-19
Identities = 33/156 (21%), Positives = 58/156 (37%), Gaps = 7/156 (4%)
Query: 1237 TNRASPNATNSNQALTNLTDSVSNTNQESPTSTELAKTSSGGFGLLHSLLASRSAFRSRP 1296
+ + + +T ST + + + AS + +
Sbjct: 16 SGCVEIPGLSEEEDPAPSRKIHFSTAPIQVFSTYSNEDYDRRNEDVDPMAAS-AEYELEK 74
Query: 1297 QTCEPTLVRVSFEKGPGKKSLGFSIVGGV---DSPKGEMGIFVKTIFPHGQAAESGLLVE 1353
+ L V EK + LG SI+G D ++GIFVKT+ G A G +
Sbjct: 75 RVERLELFPVELEKDS--EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQV 132
Query: 1354 GDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVL 1389
D ++ + L G T + A ++ + TK G V ++
Sbjct: 133 NDLLVEVDGTSLVGVTQSFAASVLRNTK-GRVRFMI 167
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 85.2 bits (211), Expect = 1e-19
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 6/106 (5%)
Query: 1288 SRSAFRSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPK--GEMGIFVKTIFPHGQA 1345
S S+ S E V + + G+ SLG IVG V + GI+VK++ P A
Sbjct: 3 SGSSGGSDSSLFETYNVEL--VRKDGQ-SLGIRIVGYVGTSHTGEASGIYVKSVIPGSAA 59
Query: 1346 AESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQP 1391
+G + D+I+ + +QG + + + + + +V L L
Sbjct: 60 YHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNAG-QVVHLTLVR 104
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding
domain, signaling protein; HET: GNP; 2.10A {Mus musculus}
SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A
Length = 128
Score = 84.9 bits (210), Expect = 2e-19
Identities = 28/122 (22%), Positives = 45/122 (36%), Gaps = 12/122 (9%)
Query: 1283 HSLLASRSAFRSRP-----QTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKG------E 1331
H +++ FR T RV K +K LGF I G
Sbjct: 5 HIVISMPQDFRPVSSIIDVDILPETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKV 64
Query: 1332 MGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQP 1391
GIF+ + P G A +GLL DE+L N + G++ + + + + ++P
Sbjct: 65 PGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANS-RNLIITVRP 123
Query: 1392 NT 1393
Sbjct: 124 AN 125
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 84.1 bits (208), Expect = 3e-19
Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 5/103 (4%)
Query: 1290 SAFRSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESG 1349
S P E +V + LG SI G + GIF+ + P +AE G
Sbjct: 3 SGSSGSPGNRENKEKKVFISLVGSR-GLGCSISSGPIQ---KPGIFISHVKPGSLSAEVG 58
Query: 1350 LLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPN 1392
L + GD+I+ N H EA+ + K ++ + +V
Sbjct: 59 LEI-GDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTISIVAAAG 100
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1
PDB: 1qav_B
Length = 112
Score = 83.7 bits (207), Expect = 3e-19
Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 9/108 (8%)
Query: 1306 VSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPL 1365
V K LGF + V P + + + G A +SGL+ GD IL N+ PL
Sbjct: 5 VRLFKRKVG-GLGFLVKERVSKP----PVIISDLIRGGAAEQSGLIQAGDIILAVNDRPL 59
Query: 1366 QGRTHAEAITIFKKTKQG-LVELVLQP---NTTEADSKEGLNLQPRLI 1409
++ A+ + + V L+L+ TT ++ + P+ I
Sbjct: 60 VDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTGDGTPKTI 107
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 82.5 bits (204), Expect = 5e-19
Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 4/91 (4%)
Query: 1313 GKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAE 1372
+LG +I GG ++ + + TI G A G L G IL N L+G+ H E
Sbjct: 15 SAATLGIAIEGGANTRQP--LPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHRE 72
Query: 1373 AITIFKKTKQ--GLVELVLQPNTTEADSKEG 1401
A I + + + + G
Sbjct: 73 AARIIAEAFKTKDRDYIDFLVTEFNSGPSSG 103
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 82.0 bits (203), Expect = 8e-19
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 1300 EPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILL 1359
+ V EK P LGFS+ GG + +GIFV + A +GL V GD+I
Sbjct: 8 SDIIHSVRVEKSPAG-RLGFSVRGGSEH---GLGIFVSKVEEGSSAERAGLCV-GDKITE 62
Query: 1360 FNNEPLQGRTHAEAITIFKKTKQGLVELVLQ 1390
N L+ T A+ + + + + ++++
Sbjct: 63 VNGLSLESTTMGSAVKVLTSSSR--LHMMVR 91
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 84.8 bits (210), Expect = 1e-18
Identities = 20/114 (17%), Positives = 37/114 (32%), Gaps = 3/114 (2%)
Query: 1297 QTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGE-MGIFVKTIFPHGQAAESGLLVEGD 1355
Q V P G + G V + + + I A G+L GD
Sbjct: 1 QVVHTETTEVVLTADPVT-GFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGD 59
Query: 1356 EILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTTEADSKEGLNLQPRLI 1409
++ N P + T EA + + + ++ L+ A+S + +
Sbjct: 60 RVMAINGIPTEDSTFEEANQLLRDSSI-TSKVTLEIEFDVAESVIPSSGTFHVK 112
Score = 79.8 bits (197), Expect = 6e-17
Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 3/113 (2%)
Query: 1280 GLLHSLLASRSAFRSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTI 1339
+ + + V K LG +I G + + I
Sbjct: 85 SITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHSV-ELGITISSPSSRKPG-DPLVISDI 142
Query: 1340 FPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPN 1392
A +G L GD++L +N L + +A+ I ++ + LV+L ++ +
Sbjct: 143 KKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCE-DLVKLKIRKD 194
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 82.5 bits (204), Expect = 1e-18
Identities = 23/87 (26%), Positives = 32/87 (36%), Gaps = 4/87 (4%)
Query: 1306 VSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPL 1365
V K PG +LG S+ K I + I P SG L GD IL + +
Sbjct: 19 VEIVKTPGS-ALGISLTTTSLRNKS--VITIDRIKPASVVDRSGALHPGDHILSIDGTSM 75
Query: 1366 QGRTHAEAITIFKKTKQGLVELVLQPN 1392
+ + EA + V L + P
Sbjct: 76 EHCSLLEATKLLASI-SEKVRLEILPV 101
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1
interacting protein 1, PDZ domain, structural genomics;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 82.1 bits (203), Expect = 1e-18
Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 6/102 (5%)
Query: 1294 SRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKG----EMGIFVKTIFPHGQAAESG 1349
S + V + + GF I+ ++ P+ + + I A
Sbjct: 2 SSGSSGSLQTSDVVIHRKENE-GFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCA 60
Query: 1350 LLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQP 1391
L GD IL N + + HA+ + + K V L + P
Sbjct: 61 KLKVGDRILAVNGQSIINMPHADIVKLIKDAG-LSVTLRIIP 101
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 81.0 bits (200), Expect = 3e-18
Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 9/105 (8%)
Query: 1288 SRSAFRSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAE 1347
S R + + V +KG LG SIV G + GI+V + A +
Sbjct: 5 SSGGERRKDRPYVEEPRHVKVQKGSE--PLGISIVSG-----EKGGIYVSKVTVGSIAHQ 57
Query: 1348 SGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPN 1392
+GL GD++L FN L+ T +A I + + ++ Q N
Sbjct: 58 AGLEY-GDQLLEFNGINLRSATEQQARLIIGQQ-CDTITILAQYN 100
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 81.1 bits (200), Expect = 3e-18
Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 8/116 (6%)
Query: 1290 SAFRSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAES- 1348
S LV + + GF++ GG D +M + V + P A
Sbjct: 3 SGSSGNGGIPHDNLVLIRMKPDENG-RFGFNVKGGYDQ---KMPVIVSRVAPGTPADLCV 58
Query: 1349 GLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQ---GLVELVLQPNTTEADSKEG 1401
L EGD+++L N + TH + + K + + G + L+++PN +E
Sbjct: 59 PRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNAVYDVVEES 114
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric
oxide synthase, oxidoreductase; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 127
Score = 81.1 bits (200), Expect = 4e-18
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Query: 1300 EPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILL 1359
EP ++ V K LGF + V P + + + G A +SGL+ GD IL
Sbjct: 6 EPNVISVRLFKRKVG-GLGFLVKERVSKP----PVIISDLIRGGAAEQSGLIQAGDIILA 60
Query: 1360 FNNEPLQGRTHAEAITIFKKTKQGLVELVLQ 1390
N+ PL ++ A+ + + +VL
Sbjct: 61 VNDRPLVDLSYDSALEVLRGIASE-THVVLI 90
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 80.2 bits (198), Expect = 8e-18
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 5/117 (4%)
Query: 1284 SLLASRSAFRSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHG 1343
S +S + +V+ G G+ SLG +I GG + +GI++ + P
Sbjct: 2 SSGSSGDRRSTLHLLQGGDEKKVNLVLGDGR-SLGLTIRGGAEY---GLGIYITGVDPGS 57
Query: 1344 QAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTTEADSKE 1400
+A SGL V GD+IL N H EA+ + K ++ ++ + A +
Sbjct: 58 EAEGSGLKV-GDQILEVNGRSFLNILHDEAVRLLKSSRHLILTVKDVGRLPHARTTV 113
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction,
membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 79.0 bits (195), Expect = 8e-18
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 12/91 (13%)
Query: 1300 EPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILL 1359
+PT +V+ K + G + IFVK I AA G + EGD +L
Sbjct: 2 KPT--KVTLVKSAKNEEYGLRLASH---------IFVKEISQDSLAARDGNIQEGDVVLK 50
Query: 1360 FNNEPLQGRTHAEAITIFKKTKQGLVELVLQ 1390
N + + +A T+ +++K G +++V+Q
Sbjct: 51 INGTVTENMSLTDAKTLIERSK-GKLKMVVQ 80
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 78.5 bits (194), Expect = 8e-18
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 1305 RVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEP 1364
+V+ K + G + IFVK I AA G + EGD +L N
Sbjct: 3 KVTLVKSRKNEEYGLRLASH---------IFVKEISQDSLAARDGNIQEGDVVLKINGTV 53
Query: 1365 LQGRTHAEAITIFKKTKQGLVELVLQ 1390
+ + +A T+ +++K G +++V+Q
Sbjct: 54 TENMSLTDAKTLIERSK-GKLKMVVQ 78
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 78.2 bits (193), Expect = 2e-17
Identities = 20/86 (23%), Positives = 28/86 (32%), Gaps = 2/86 (2%)
Query: 1300 EPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILL 1359
V EK G+ LG ++V + + G A SG L GD +
Sbjct: 7 GDNCREVHLEKRRGE-GLGVALVESGWGSL-LPTAVIANLLHGGPAERSGALSIGDRLTA 64
Query: 1360 FNNEPLQGRTHAEAITIFKKTKQGLV 1385
N L G A ++TK
Sbjct: 65 INGTSLVGLPLAACQAAVRETKSQTS 90
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics,
mouse cDNA, riken structural genomics/proteomics
initiative; NMR {Mus musculus} SCOP: b.36.1.1
Length = 126
Score = 79.1 bits (195), Expect = 2e-17
Identities = 14/105 (13%), Positives = 37/105 (35%), Gaps = 9/105 (8%)
Query: 1287 ASRSAFRSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAA 1346
+ + + +++ G LG ++ + + + G AA
Sbjct: 12 KEQLSKAKASVSSLNKVIQTKLTVGN--LGLGLVVIQN------GPYLQISHLINKGAAA 63
Query: 1347 ESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQG-LVELVLQ 1390
G+L GD ++ + + G T E + + + G ++++
Sbjct: 64 SDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAY 108
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 76.6 bits (189), Expect = 4e-17
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 7/92 (7%)
Query: 1305 RVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEP 1364
+ K LG +I + I V I G A SGL+ GDE+ N P
Sbjct: 7 IIRLVKNRE--PLGATIKKDEQTG----AIIVARIMRGGAADRSGLIHVGDELREVNGIP 60
Query: 1365 LQGRTHAEAITIFKKTKQGLVELVLQPNTTEA 1396
++ + E I I +++ G + + P + E
Sbjct: 61 VEDKRPEEIIQILAQSQ-GAITFKIIPGSKEE 91
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 76.2 bits (188), Expect = 6e-17
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 8/87 (9%)
Query: 1304 VRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNE 1363
+V E GF + GG D + + + + P G+AA++G+ V GD +L + E
Sbjct: 5 FKVVLEGPAP---WGFRLQGGKDFN---VPLSISRLTPGGKAAQAGVAV-GDWVLSIDGE 57
Query: 1364 PLQGRTHAEAITIFKKTKQGLVELVLQ 1390
TH EA + + L L
Sbjct: 58 NAGSLTHIEAQNKIRACG-ERLSLGLS 83
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein; 1.70A
{Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 75.8 bits (187), Expect = 7e-17
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 1312 PGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHA 1371
G GF I GG D I V + G+A ++ L GD I+ N E +G HA
Sbjct: 9 AGPAPWGFRITGGRDFH---TPIMVTKVAERGKAKDADLRP-GDIIVAINGESAEGMLHA 64
Query: 1372 EAITIFKKTKQGLVELVLQPNT 1393
EA + +++ L + + +
Sbjct: 65 EAQSKIRQSPSPLRLQLDRITS 86
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 75.9 bits (187), Expect = 8e-17
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 8/95 (8%)
Query: 1296 PQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGD 1355
P E V + K G + GFS+ G E G++VK I P G GL D
Sbjct: 2 PTPVELHKVTL--YKDSGMEDFGFSVADG----LLEKGVYVKNIRPAGPGDLGGLKP-YD 54
Query: 1356 EILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQ 1390
+L N+ + + + ++ ++LV+
Sbjct: 55 RLLQVNHVRTRDFDCCLVVPLIAESGN-KLDLVIS 88
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog;
PDZ domain, cellular signaling, structural genomics; NMR
{Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 76.8 bits (189), Expect = 1e-16
Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 3/102 (2%)
Query: 1290 SAFRSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGE-MGIFVKTIFPHGQAAES 1348
S Q V P G + G V + + + I A
Sbjct: 3 SGSSGAGQVVHTETTEVVLTADPVT-GFGIQLQGSVFATETLSSPPLISYIEADSPAERC 61
Query: 1349 GLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQ 1390
G+L GD ++ N P + T EA + + + ++ L+
Sbjct: 62 GVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSI-TSKVTLE 102
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens}
SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Length = 91
Score = 75.4 bits (186), Expect = 1e-16
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 14/103 (13%)
Query: 1293 RSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLV 1352
R P+ C L + G GF + G KG++G +++ + P A ++GLL
Sbjct: 1 RMLPRLCC--LEK-------GPNGYGFHLHGE----KGKLGQYIRLVEPGSPAEKAGLLA 47
Query: 1353 EGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTTE 1395
GD ++ N E ++ TH + ++ + + LV+ P T E
Sbjct: 48 -GDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDE 89
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202
protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 75.5 bits (186), Expect = 1e-16
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 1303 LVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNN 1362
V V + G GF++ GG++ + V I G+AA S + GDE++ N
Sbjct: 12 YVPVQLQGGAP---WGFTLKGGLEHC---EPLTVSKIEDGGKAALSQKMRTGDELVNING 65
Query: 1363 EPLQGRTHAEAITIFKKTKQGLVELVLQ 1390
PL G + EA+ + K + +++L+++
Sbjct: 66 TPLYG-SRQEALILIKGSF-RILKLIVR 91
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 74.6 bits (184), Expect = 2e-16
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 8/85 (9%)
Query: 1306 VSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPL 1365
V+ GF + GG D M + + I P +AA+S L GD ++ +
Sbjct: 5 VTLTGPGP---WGFRLQGGKDFN---MPLTISRITPGSKAAQSQLSQ-GDLVVAIDGVNT 57
Query: 1366 QGRTHAEAITIFKKTKQGLVELVLQ 1390
TH EA K L L LQ
Sbjct: 58 DTMTHLEAQNKIKSASYNLS-LTLQ 81
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog,
phosphorylation, signaling PR LIM domain, PDZ domain;
1.5A {Homo sapiens}
Length = 88
Score = 74.2 bits (183), Expect = 3e-16
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 8/87 (9%)
Query: 1304 VRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNE 1363
VS GF + GG D M + + ++ G+AA++ + + GD +L +
Sbjct: 5 YSVSLVGPAP---WGFRLQGGKD---FNMPLTISSLKDGGKAAQANVRI-GDVVLSIDGI 57
Query: 1364 PLQGRTHAEAITIFKKTKQGLVELVLQ 1390
QG TH EA K L + LQ
Sbjct: 58 NAQGMTHLEAQNKIKGCTGSL-NMTLQ 83
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil,
deafness, hearing, non-syndromic deafness, polymorphism;
2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 77.3 bits (190), Expect = 4e-16
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
Query: 1286 LASRSAFRSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQA 1345
L + + L V ++ + LG S+ GG++ G+F+ + GQA
Sbjct: 68 LKHQVEYDQLTPRRSRKLKEVRLDR-LHPEGLGLSVRGGLEFG---CGLFISHLIKGGQA 123
Query: 1346 AESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQ 1390
GL V GDEI+ N + TH E I + + K V + ++
Sbjct: 124 DSVGLQV-GDEIVRINGYSISSCTHEEVINLIRTEKT--VSIKVR 165
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 73.2 bits (180), Expect = 7e-16
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 8/96 (8%)
Query: 1302 TLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFN 1361
T ++ + GF +VGG D + + + P +AA + L + GD I +
Sbjct: 3 TTQQIDLQGPGP---WGFRLVGGKDFE---QPLAISRVTPGSKAALANLCI-GDVITAID 55
Query: 1362 NEPLQGRTHAEAITIFKKTKQGLVELVLQPNTTEAD 1397
E TH EA K L L + + E+D
Sbjct: 56 GENTSNMTHLEAQNRIKGCTDNLT-LTVARSEHESD 90
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 113
Score = 74.0 bits (182), Expect = 8e-16
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 8/105 (7%)
Query: 1290 SAFRSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESG 1349
+ S T+ V EK LG ++ +D + + I G A +SG
Sbjct: 13 RVYESIGHYGGETVKIVRIEKARDI-PLGATVRNEMD------SVIISRIVKGGAAEKSG 65
Query: 1350 LLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTT 1394
LL EGDE+L N ++G+ E + G + VL P++
Sbjct: 66 LLHEGDEVLEINGIEIRGKDVNEVFDLLSDM-HGTLTFVLIPSSG 109
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 76.9 bits (189), Expect = 9e-16
Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 8/104 (7%)
Query: 1290 SAFRSRPQTCEPT---LVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAA 1346
+ P T E + + + +G + GG ++ G + ++P GQ A
Sbjct: 3 GSKPQEPATAEIKPNKKILIELKVEKK--PMGVIVCGGKNNHVT-TGCVITHVYPEGQVA 59
Query: 1347 ESGLLVEGDEILLFNNEPL--QGRTHAEAITIFKKTKQGLVELV 1388
L D I N P+ T + +F T + V L
Sbjct: 60 ADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFHTTYEKAVTLT 103
Score = 76.1 bits (187), Expect = 2e-15
Identities = 23/102 (22%), Positives = 34/102 (33%), Gaps = 8/102 (7%)
Query: 1288 SRSAFRSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAE 1347
+ + R E V K GK LG S+ E+G + +
Sbjct: 99 AVTLTVFRADPPELEKFNVDLMKKAGK-ELGLSLSPN------EIGCTIADLIQGQYPEI 151
Query: 1348 SGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVL 1389
L GD I FN + L+G +FK G V + +
Sbjct: 152 DSKLQRGDIITKFNGDALEGLPFQVCYALFKGA-NGKVSMEV 192
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 72.7 bits (179), Expect = 1e-15
Identities = 22/90 (24%), Positives = 32/90 (35%), Gaps = 8/90 (8%)
Query: 1306 VSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPL 1365
V+ GF +VGG D + + + +AA + L GD I N E
Sbjct: 12 VTLRGPSP---WGFRLVGGRDF---SAPLTISRVHAGSKAALAALCP-GDLIQAINGEST 64
Query: 1366 QGRTHAEAITIFKKTKQGLVELVLQPNTTE 1395
+ TH EA K L L + +
Sbjct: 65 ELMTHLEAQNRIKGCHDHLT-LSVSSGPSS 93
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel 3
chimera; PDZ domain, PDZ binding, GIRK3 regulation, early
endosomes; 1.68A {Rattus norvegicus} PDB: 3qdo_A 3qgl_A
Length = 107
Score = 72.8 bits (179), Expect = 2e-15
Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 14/105 (13%)
Query: 1300 EPTLVRVSFEKGPGKKSLGFSIVGGVD---------SPKGEMGIFVKTIFPHGQAAESGL 1350
P +VR+ K GF++ G V V + P G A +G+
Sbjct: 6 SPRVVRI--VKSES--GYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGV 61
Query: 1351 LVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTTE 1395
GD IL N ++G TH + + + + ++ L+ VL +
Sbjct: 62 RK-GDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSVESES 105
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural
genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 71.7 bits (176), Expect = 2e-15
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 9/88 (10%)
Query: 1304 VRVSFEKGPG-KKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNN 1362
+R+S + PG GF+I + GIFV ++ A S L V DEI+ NN
Sbjct: 5 MRISINQTPGKSLDFGFTIKWDIP------GIFVASVEAGSPAEFSQLQV-DDEIIAINN 57
Query: 1363 EPLQGRTHAEAITIFKKTKQGLVELVLQ 1390
E K ++ LV+
Sbjct: 58 TKFSYNDSKEWEEAMAKAQET-GHLVMD 84
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; structural genomi consortium, SGC, ATP-binding, cell
junction; 1.60A {Homo sapiens}
Length = 88
Score = 71.5 bits (176), Expect = 2e-15
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 1301 PTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLF 1360
L+ V KGP GF+I G G VK I + S L EGD I+
Sbjct: 2 MELITVHIVKGP--MGFGFTIADS----PGGGGQRVKQIVD---SPRSRGLKEGDLIVEV 52
Query: 1361 NNEPLQGRTHAEAITIFKKTKQG-LVELVLQ 1390
N + +Q TH + + + ++ +G V L++Q
Sbjct: 53 NKKNVQALTHNQVVDMLVESPKGSEVTLLVQ 83
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 71.2 bits (175), Expect = 4e-15
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Query: 1312 PGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHA 1371
G GF I GG D I V + G+A + L GD I+ N + + HA
Sbjct: 13 AGPAPWGFRISGGRDFH---TPIIVTKVTERGKAEAADLRP-GDIIVAINGQSAENMLHA 68
Query: 1372 EAITIFKKTKQGLVELVLQ 1390
EA + +++ + L L
Sbjct: 69 EAQSKIRQSA-SPLRLQLD 86
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural
genomics consort protein binding; 2.60A {Homo sapiens}
Length = 95
Score = 71.3 bits (175), Expect = 4e-15
Identities = 22/100 (22%), Positives = 33/100 (33%), Gaps = 10/100 (10%)
Query: 1300 EPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILL 1359
V V K SLG +I G F+K I G + GD I
Sbjct: 5 IEKEVNV--YKSED--SLGLTITDN-----GVGYAFIKRIKDGGVIDSVKTICVGDHIES 55
Query: 1360 FNNEPLQGRTHAEAITIFKKTKQGL-VELVLQPNTTEADS 1398
N E + G H + K+ K+ + L +++
Sbjct: 56 INGENIVGWRHYDVAKKLKELKKEELFTMKLIEPKKSSEA 95
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 70.5 bits (173), Expect = 8e-15
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 7/89 (7%)
Query: 1305 RVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEP 1364
+ FEK + +G + + V I G G L GDEIL N
Sbjct: 15 LIQFEKVTEE-PMGICLKLN-----EKQSCTVARILHGGMIHRQGSLHVGDEILEINGTN 68
Query: 1365 LQGRTHAEAITIFKKTKQGLVELVLQPNT 1393
+ + + K+TK G++ L + PN
Sbjct: 69 VTNHSVDQLQKAMKETK-GMISLKVIPNQ 96
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 69.7 bits (171), Expect = 2e-14
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 1300 EPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILL 1359
+P L + K G S GFS+ +G+ G+++ I P G A +G+L D ++
Sbjct: 8 QPRLCYL--VKEGG--SYGFSLKTV----QGKKGVYMTDITPQGVAMRAGVL-ADDHLIE 58
Query: 1360 FNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTTEADSKE 1400
N E ++ +H E + KK+ ++ L++ T + ++
Sbjct: 59 VNGENVEDASHEEVVEKVKKSGSRVMFLLVDKETDKRHVEQ 99
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium, SGC,
unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 68.5 bits (168), Expect = 3e-14
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 14/99 (14%)
Query: 1295 RPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEG 1354
RP+ C L + G + GF++ K G +++++ P AA SGL
Sbjct: 4 RPRLCH--LRK-------GPQGYGFNLHSD----KSRPGQYIRSVDPGSPAARSGLR-AQ 49
Query: 1355 DEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNT 1393
D ++ N + ++G HAE + K + LV+ P+T
Sbjct: 50 DRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 88
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding,
RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A
{Homo sapiens}
Length = 109
Score = 69.1 bits (169), Expect = 4e-14
Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 17/98 (17%)
Query: 1292 FRSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLL 1351
F+S P++ F G LGF++ +G + V + P+ A+ +G
Sbjct: 20 FQSMPRSIR-------FTAEEG--DLGFTL-------RGNAPVQVHFLDPYCSASVAGAR 63
Query: 1352 VEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVL 1389
EGD I+ + T +E + + K + +E+ +
Sbjct: 64 -EGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKV 100
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 68.1 bits (167), Expect = 5e-14
Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 7/91 (7%)
Query: 1305 RVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEP 1364
V F+K + +G ++ V I G G L GDEI N
Sbjct: 4 LVQFQKNTDE-PMGITLKMN-----ELNHCIVARIMHGGMIHRQGTLHVGDEIREINGIS 57
Query: 1365 LQGRTHAEAITIFKKTKQGLVELVLQPNTTE 1395
+ +T + + ++ + G + + P+ E
Sbjct: 58 VANQTVEQLQKMLREMR-GSITFKIVPSYRE 87
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain,
PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 68.1 bits (167), Expect = 5e-14
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 9/96 (9%)
Query: 1300 EPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILL 1359
P L + +KGP GF++ K + G F++++ P A SGL D I+
Sbjct: 9 RPRLCTM--KKGP--SGYGFNLHSD----KSKPGQFIRSVDPDSPAEASGLRA-QDRIVE 59
Query: 1360 FNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTTE 1395
N ++G+ H + ++ + LV+ T E
Sbjct: 60 VNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETDE 95
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 68.5 bits (168), Expect = 5e-14
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 1312 PGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHA 1371
G GF + GG D M + + ++ G+A+++ + + GD +L + QG TH
Sbjct: 12 VGPAPWGFRLQGGKDFN---MPLTISSLKDGGKASQAHVRI-GDVVLSIDGISAQGMTHL 67
Query: 1372 EAITIFKKTKQGLVELVLQPNTT 1394
EA K L + + +
Sbjct: 68 EAQNKIKACTGSLNMTLQRASAA 90
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural genomics;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 68.2 bits (167), Expect = 7e-14
Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 1312 PGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHA 1371
PG GF + GG+D + + I P +AA + L GD IL + + THA
Sbjct: 12 PGPAPWGFRLSGGIDF---NQPLVITRITPGSKAAAANLCP-GDVILAIDGFGTESMTHA 67
Query: 1372 EAITIFKKTKQGLVELVLQPNTTEA 1396
+A K L + + T
Sbjct: 68 DAQDRIKAASYQLCLKIDRAETRLW 92
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1
interacting protein 1, PDZ domain, structural genomics,
KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 96
Score = 67.8 bits (166), Expect = 7e-14
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 12/92 (13%)
Query: 1300 EPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILL 1359
+ L+ ++ KG + GF+I G VK I L EGD I+
Sbjct: 8 QAELMTLTIVKGA--QGFGFTIADS------PTGQRVKQILDIQGCPG---LCEGDLIVE 56
Query: 1360 FNNEPLQGRTHAEAITIFKKTKQG-LVELVLQ 1390
N + +Q +H E + I K G L++
Sbjct: 57 INQQNVQNLSHTEVVDILKDCPIGSETSLIIH 88
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane
associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 74.9 bits (183), Expect = 1e-13
Identities = 37/145 (25%), Positives = 54/145 (37%), Gaps = 8/145 (5%)
Query: 1253 NLTDSVSNTNQESPTSTELAKTSSGGFGLLHSLLASRSAFRSRPQTCEPTLVRVSFEKGP 1312
D + + SP S +L A E ++ E+G
Sbjct: 13 RYQDEDTPPLKHSPAHLPNQANSPPVIVNTDTLEAPGY---VNGTEGEMEYEEITLERGN 69
Query: 1313 GKKSLGFSIVGGVDSP--KGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTH 1370
LGFSI GG D+P + IF+ I P G AA+ G L D IL N ++ TH
Sbjct: 70 S--GLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTH 127
Query: 1371 AEAITIFKKTKQGLVELVLQPNTTE 1395
+ A+ K+ +V L +
Sbjct: 128 SAAVEALKEAG-SIVRLYVMRRKPP 151
Score = 72.2 bits (176), Expect = 8e-13
Identities = 39/198 (19%), Positives = 61/198 (30%), Gaps = 24/198 (12%)
Query: 1194 NSNSSSRSNANQSLPKSNQSLPNSNQNLPTSNQVPSSTDSVSNTNRASPNATNSNQALTN 1253
+A +L + + + S T+ + + +
Sbjct: 216 GLEDVMHEDAVAALKNTYDVVYLKVAKPSNAYLSDSYAPPDITTSYSQHLDNEISHSSYL 275
Query: 1254 LTDSVSNTNQESPTSTELAKTSSGGFGLLHSLLASRSAFRSRPQTCEPTLVRVSFEKGPG 1313
TD + SP G + R+ +G
Sbjct: 276 GTDYPTAMTPTSPRRYSPVAKDLLG-----------------EEDIPREPRRIVIHRGST 318
Query: 1314 KKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEA 1373
LGF+IVGG D GIF+ I G A SG L +GD+IL N L+ +H +A
Sbjct: 319 --GLGFNIVGGEDGE----GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQA 372
Query: 1374 ITIFKKTKQGLVELVLQP 1391
K V ++ Q
Sbjct: 373 AIALKNA-GQTVTIIAQY 389
Score = 51.8 bits (123), Expect = 2e-06
Identities = 36/140 (25%), Positives = 54/140 (38%), Gaps = 4/140 (2%)
Query: 1295 RPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSP--KGEMGIFVKTIFPHGQAAESGLLV 1352
R + ++ + KGP K LGFSI GGV + G+ I+V I G A + G L
Sbjct: 147 RRKPPAEKVMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQ 204
Query: 1353 EGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTTEADSKEGLNLQPRLIPRA 1412
GD+IL N+ L+ H +A+ K T + V +P+ +
Sbjct: 205 IGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSNAYLSDSYAPPDITTSYSQH 264
Query: 1413 DFTTQIYHSYNPTQPRLIPR 1432
+ SY T
Sbjct: 265 LDNEISHSSYLGTDYPTAMT 284
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 70.9 bits (173), Expect = 2e-13
Identities = 39/156 (25%), Positives = 59/156 (37%), Gaps = 15/156 (9%)
Query: 1233 SVSNTNRASPNATNSNQALTNLTD---SVSNTNQESPTSTELAKTSSGGFGLLHSLLASR 1289
+ + + L +L + +VS + E E A+ +
Sbjct: 13 ELRCGAGSGAGGERWQRVLLSLAEDALTVSPADGEPGPEPEPAQLNGAA--------EPG 64
Query: 1290 SAFRSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESG 1349
+A P+ RV+ K LG SI GG ++ M I + IF A ++
Sbjct: 65 AAPPQLPEALLLQRRRVTVRKADAG-GLGISIKGGRENK---MPILISKIFKGLAADQTE 120
Query: 1350 LLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLV 1385
L GD IL N E L TH EA+ KKT + +V
Sbjct: 121 ALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVV 156
Score = 32.4 bits (73), Expect = 0.90
Identities = 21/130 (16%), Positives = 35/130 (26%), Gaps = 20/130 (15%)
Query: 1249 QALTNLTDSVSNTNQESPTSTELAKTSSGGFGLLHSLLASRSAFRSRPQTCEPTLVRVSF 1308
QAL V + + K S+GG + + R + R
Sbjct: 146 QALKKTGKEVVLEVKYMKEVSPYFKNSAGGTSVGWDSPPASP--LQRQPSSPGPQPRNLS 203
Query: 1309 EKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGR 1368
E SL + V +P +++ GQ A L+ +
Sbjct: 204 EAKHV--SLKMAYVSRRCTPTDPEPRYLEICAADGQDA----------------VFLRAK 245
Query: 1369 THAEAITIFK 1378
A A +
Sbjct: 246 DEASARSWAG 255
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein,
transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Length = 91
Score = 66.1 bits (162), Expect = 2e-13
Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 9/99 (9%)
Query: 1298 TCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEI 1357
+ +P L R+ KG GF + +G G F+K + G A +GL + D I
Sbjct: 1 SMKPKLCRL--AKGEN--GYGFHLNAI----RGLPGSFIKEVQKGGPADLAGLE-DEDVI 51
Query: 1358 LLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTTEA 1396
+ N + + + + + + + + LV +
Sbjct: 52 IEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVCGKKAQDT 90
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding
protein signaling protein; 1.56A {Homo sapiens} SCOP:
b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A
1ybo_A
Length = 166
Score = 67.9 bits (166), Expect = 4e-13
Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 8/85 (9%)
Query: 1306 VSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPL 1365
V K +G + + GIFV+ + + A+ GL GD++L N E
Sbjct: 8 VILCKDQDG-KIGLRLKSI------DNGIFVQLVQANSPASLVGLRF-GDQVLQINGENC 59
Query: 1366 QGRTHAEAITIFKKTKQGLVELVLQ 1390
G + +A + K+ + + ++
Sbjct: 60 AGWSSDKAHKVLKQAFGEKITMTIR 84
Score = 44.8 bits (106), Expect = 4e-05
Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 13/93 (13%)
Query: 1299 CEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEIL 1358
P ++ K +GF G + +I AA +GLL I
Sbjct: 85 DRPFERTITMHKDSTG-HVGFIFKNGKIT----------SIVKDSSAARNGLLT-EHNIC 132
Query: 1359 LFNNEPLQGRTHAEAITIFKKTKQGLVELVLQP 1391
N + + G ++ I + +V + + P
Sbjct: 133 EINGQNVIGLKDSQIADILSTSG-TVVTITIMP 164
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain,
protein, acetylation, cell projection, disease mutation,
membrane; NMR {Homo sapiens}
Length = 128
Score = 66.0 bits (161), Expect = 8e-13
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 9/102 (8%)
Query: 1301 PTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLF 1360
P L + +KGP GF++ K + G F++++ P A SGL D I+
Sbjct: 10 PRLCTM--KKGP--SGYGFNLHSD----KSKPGQFIRSVDPDSPAEASGLRA-QDRIVEV 60
Query: 1361 NNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTTEADSKEGL 1402
N ++G+ H + ++ + LV+ T E K +
Sbjct: 61 NGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETDEFFKKCRV 102
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 64.7 bits (158), Expect = 9e-13
Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
Query: 1300 EPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILL 1359
+P + + EKGP + GF + G G F+ + P A ++G+ GD ++
Sbjct: 3 KPRCLHL--EKGP--QGFGFLLREEK-GLDGRPGQFLWEVDPGLPAKKAGMQA-GDRLVA 56
Query: 1360 FNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTTE 1395
E ++G H E ++ + + V+ P
Sbjct: 57 VAGESVEGLGHEETVSRIQGQGSCVSLTVVDPEADR 92
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 70.2 bits (171), Expect = 2e-12
Identities = 32/116 (27%), Positives = 45/116 (38%), Gaps = 10/116 (8%)
Query: 1300 EPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILL 1359
P++ V F KG S+G + GG D GIFV + AA+ GL EGD+IL
Sbjct: 7 RPSMKLVKFRKG---DSVGLRLAGGNDV-----GIFVAGVLEDSPAAKEGLE-EGDQILR 57
Query: 1360 FNNEPLQGRTHAEAITIFKKTKQGL-VELVLQPNTTEADSKEGLNLQPRLIPRADF 1414
NN EA+ +G V ++ Q ++ R F
Sbjct: 58 VNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHF 113
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 64.3 bits (157), Expect = 2e-12
Identities = 21/108 (19%), Positives = 36/108 (33%), Gaps = 14/108 (12%)
Query: 1294 SRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVE 1353
S + + + G GF + G + G +K I P A +GL
Sbjct: 5 SSGRVV--VIKK-------GSNGYGFYLRAG----PEQKGQIIKDIEPGSPAEAAGLK-N 50
Query: 1354 GDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTTEADSKEG 1401
D ++ N + ++ H + + +K LVL S G
Sbjct: 51 NDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKEAESIYSLSG 98
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 96
Score = 63.9 bits (156), Expect = 2e-12
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 9/86 (10%)
Query: 1306 VSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPL 1365
V +K + GF I + + V + G +A L GD+IL NNEP
Sbjct: 12 VKIDKDTLLQDYGFHI-------SESLPLTVVAVTAGG-SAHGKLFP-GDQILQMNNEPA 62
Query: 1366 QGRTHAEAITIFKKTKQGLVELVLQP 1391
+ + A+ I ++ + L V++
Sbjct: 63 EDLSWERAVDILREAEDSLSITVVRC 88
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 64.3 bits (156), Expect = 2e-12
Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 4/101 (3%)
Query: 1299 CEPTLVRVSFEKGPG-KKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEI 1357
C + EK + GFS+ + ++V ++ G A++ GL GDEI
Sbjct: 12 CPKVTQSIHIEKSDTAADTYGFSLSSVEEDGIR--RLYVNSVKETGLASKKGLKA-GDEI 68
Query: 1358 LLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTTEADS 1398
L NN + + GL+ +S
Sbjct: 69 LEINNRAADALNSSMLKDFLSQPSLGLLVRTYPELEEGVES 109
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 63.0 bits (154), Expect = 2e-12
Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 10/91 (10%)
Query: 1301 PTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLF 1360
P + V +G GF++ G+ + + A GL GD+IL
Sbjct: 1 PRVRSVEVARGRA--GYGFTL-------SGQAPCVLSCVMRGSPADFVGLRA-GDQILAV 50
Query: 1361 NNEPLQGRTHAEAITIFKKTKQGLVELVLQP 1391
N ++ +H + + + K L ++ +
Sbjct: 51 NEINVKKASHEDVVKLIGKCSGVLHMVIAEG 81
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa,
Na/PI cotransporter C- terminal-associated protein,
NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 64.0 bits (156), Expect = 2e-12
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 6/102 (5%)
Query: 1305 RVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEP 1364
K G+ + GF + K G ++ I A ++GLL GD +L N
Sbjct: 16 ECKLSKQEGQ-NYGFFLRIE----KDTDGHLIRVIEEGSPAEKAGLLD-GDRVLRINGVF 69
Query: 1365 LQGRTHAEAITIFKKTKQGLVELVLQPNTTEADSKEGLNLQP 1406
+ HA+ + + +K+ + LVL ++ E K ++L+
Sbjct: 70 VDKEEHAQVVELVRKSGNSVTLLVLDGDSYEKAVKNQVDLKE 111
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling
protein; 1.80A {Mus musculus}
Length = 106
Score = 64.0 bits (156), Expect = 2e-12
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 6/101 (5%)
Query: 1305 RVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEP 1364
K G+ + GF + K G ++ I A ++GLL GD +L N
Sbjct: 4 ESKLSKQEGQ-NYGFFLRIE----KDTDGHLIRVIEEGSPAEKAGLLD-GDRVLRINGVF 57
Query: 1365 LQGRTHAEAITIFKKTKQGLVELVLQPNTTEADSKEGLNLQ 1405
+ HA+ + + +K+ + LVL ++ E K ++L+
Sbjct: 58 VDKEEHAQVVELVRKSGNSVTLLVLDGDSYEKAVKNQVDLK 98
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 66.1 bits (160), Expect = 3e-12
Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 7/119 (5%)
Query: 1315 KSLGFSIVGGVDSPK-----GEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRT 1369
LGFSI GGV + GIFV + P G A+ LL GD+I+ N
Sbjct: 2 PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQANGYSFINIE 59
Query: 1370 HAEAITIFKKTKQGLVELVLQPNTTEADSKEGLNLQPRLIPRADFTTQIYHSYNPTQPR 1428
H +A+++ K + + ++++ A + + ++ + P
Sbjct: 60 HGQAVSLLKTFQNTVELIIVREVGNGAKQEIRVRVEKDGGSGGVSSVPTNLEVVAATPT 118
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor
protein, SR-BI, signaling protein; 1.30A {Mus musculus}
PDB: 3r69_A*
Length = 95
Score = 63.1 bits (154), Expect = 3e-12
Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 9/96 (9%)
Query: 1300 EPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILL 1359
+P +V + +KG GF + G + G +K I P A +GL D ++
Sbjct: 5 QPRVVVI--KKGS--NGYGFYLRAG----PEQKGQIIKDIEPGSPAEAAGLKN-NDLVVA 55
Query: 1360 FNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTTE 1395
N + ++ H + + +K LVL
Sbjct: 56 VNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKELER 91
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein
3; structural genomics consortium, SGC, PDZ domain,
signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 62.5 bits (152), Expect = 8e-12
Identities = 23/114 (20%), Positives = 41/114 (35%), Gaps = 17/114 (14%)
Query: 1287 ASRSAFRSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAA 1346
A + ++ L++ G K GF+I G VK I
Sbjct: 2 AMATLYKKAGLLVTIPLIK-------GPKGFGFAIADS------PTGQKVKMILDSQWCQ 48
Query: 1347 ESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQG-LVELVLQPNTTEADSK 1399
L +GD I ++ +Q TH + + + K+ G V L++ + +K
Sbjct: 49 G---LQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGPPSPTK 99
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large
homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 60.5 bits (147), Expect = 2e-11
Identities = 20/92 (21%), Positives = 31/92 (33%), Gaps = 9/92 (9%)
Query: 1305 RVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEP 1364
V K G+ LG + + + I G A+ GLL GD I N +P
Sbjct: 9 MVGIRKTAGE-HLGVTFRVE------GGELVIARILHGGMVAQQGLLHVGDIIKEVNGQP 61
Query: 1365 LQGRTHAEAITIFKKTKQGLVELVLQPNTTEA 1396
+ G + + G V L + +
Sbjct: 62 V-GSDPRALQELLRNAS-GSVILKILSGPSSG 91
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein;
PDZ domain, cytoplasm, membrane, polymorphism, protein
binding; 2.70A {Homo sapiens}
Length = 104
Score = 60.9 bits (148), Expect = 3e-11
Identities = 24/107 (22%), Positives = 41/107 (38%), Gaps = 8/107 (7%)
Query: 1287 ASRSAFRSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGV----DSPKGEMGIFVKTIFPH 1342
+S S+ S + LV V EK + + GF I ++ EM + I
Sbjct: 2 SSGSSGLSDFSWSQRKLVTV--EKQDNE-TFGFEIQSYRPQNQNACSSEMFTLICKIQED 58
Query: 1343 GQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVL 1389
A +GL GD + N +G T+ + + + + + L L
Sbjct: 59 SPAHCAGLQA-GDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIETL 104
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 60.5 bits (147), Expect = 3e-11
Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 10/104 (9%)
Query: 1290 SAFRSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESG 1349
S ++++ +G GF+I + + V+ + G A +G
Sbjct: 3 SGSSGEGDPENGEKLQITIRRGKD--GFGFTI-------CCDSPVRVQAVDSGGPAERAG 53
Query: 1350 LLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNT 1393
L D +L N P++ E + ++ LV + +
Sbjct: 54 LQQ-LDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRVSG 96
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding; 1.80A
{Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 60.1 bits (146), Expect = 4e-11
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 9/98 (9%)
Query: 1300 EPTLVRVSFEKGPGKKSLGFSIVGGV----DSPKGEMGIFVKTIFPHGQAAESGLLVEGD 1355
+ ++ + EKG + + GF I + + EM FV + A +GL GD
Sbjct: 4 QRKVLTL--EKGDNQ-TFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTP-GD 59
Query: 1356 EILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNT 1393
I N ++G H E + I K + ++ L T
Sbjct: 60 TIASVNGLNVEGIRHREIVDIIKASGN-VLRLETLYGT 96
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 60.1 bits (146), Expect = 4e-11
Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 7/95 (7%)
Query: 1305 RVSFEKGPGKKSLGFSIVGGV----DSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLF 1360
+ K GFS+ DS + V ++ A E+GL GD I
Sbjct: 5 PIVIHSSG--KKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAGLRA-GDLITHI 61
Query: 1361 NNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTTE 1395
N E + G H + + + K+ + TE
Sbjct: 62 NGESVLGLVHMDVVELLLKSGNKISLRTTALENTE 96
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 66.4 bits (161), Expect = 6e-11
Identities = 66/508 (12%), Positives = 136/508 (26%), Gaps = 166/508 (32%)
Query: 166 AIRSDL----TLSENRPLFSPSLNEEVMDMNYLYNFKCRRKQNFLL---LNDYKSLTNDY 218
A + + + S EE+ + K L L +
Sbjct: 28 AFVDNFDCKDVQDMPKSILS---KEEIDH---IIMSKDAVSGTLRLFWTLLSKQE--EMV 79
Query: 219 KSCDSKSLSNDYK------SSDCKSLANDYKL-SDCK-ALANDYKSSDSMSLVNDYKP-- 268
+ + L +YK ++ + + ++ + + L ND + + V+ +P
Sbjct: 80 QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN-VSRLQPYL 138
Query: 269 ------SQTNGSTEVTAHRSTDLVGTDGKPNL-SDVSKPLP-HINLPINLY--------- 311
+ + V ++G+ GK + DV + ++
Sbjct: 139 KLRQALLELRPAKNVLID---GVLGS-GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 312 PTPTVAAMSNLNVPV-------SLHHCAYISSNESGYDSDSTTRQSEQHSPNS------- 357
P + + L + S H S +S+ + N
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY-ENCLLVLLNV 253
Query: 358 ------EHFNFGTPSPPLI-----EVGDYLSLPLYLNQGTSVDGTDGAKALGRAGRPDLV 406
FN L+ +V D+LS T + + L L+
Sbjct: 254 QNAKAWNAFNLS--CKILLTTRFKQVTDFLSAATT----THISLDHHSMTLTPDEVKSLL 307
Query: 407 ARFEDVPTGDGPFEA-NGAPKA------------------PHANTSATDKSVEDVYDFVE 447
++ D D P E P+ H N +E + +E
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 448 PS---------SVLCSSKGGLKCP-----PNPVL-----NSVSN-----LDILERSSVKG 483
P+ SV P P +L + + + ++ L + S
Sbjct: 368 PAEYRKMFDRLSVF---------PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS--- 415
Query: 484 QTNSNPLLIKATRDFAKDGHLATNDGNSLLAKLHAQPSNQGEAH----ETYSFI-CFDQS 538
L++ + K+ ++ + +L + N+ H + Y+ FD
Sbjct: 416 -------LVE--KQ-PKESTISIPS---IYLELKVKLENEYALHRSIVDHYNIPKTFDS- 461
Query: 539 NGEKNRIVEMDHGNTQSDDGDYEYIFNF 566
D D Y ++
Sbjct: 462 ----------DDLIPPYLDQ---YFYSH 476
Score = 62.6 bits (151), Expect = 1e-09
Identities = 81/538 (15%), Positives = 144/538 (26%), Gaps = 182/538 (33%)
Query: 987 EHVSLKSKAIFSNEESR---GLSNRHEANRR------SKRSS--KKSVEPTPAQN----- 1030
+ V K+I S EE + R SK+ +K VE N
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95
Query: 1031 ----DEN---SLENDL-VRALNLALRTGALMSPQNPSAQRPKSFD-----LEEFAPRAMV 1077
E S+ + + + + + N R + + L E P V
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN--VSRLQPYLKLRQALLELRPAKNV 153
Query: 1078 PLH--------------SSSPNIQRKVS------SLDRKRRS------QQN-----NPNQ 1106
+ S +Q K+ +L Q +PN
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 1107 H-RSEDVKAYRSRTEDLKDCLSRTENVNASTNSTKEY-RSLVDTASEVRLDEMGHVPDVL 1164
RS+ + R ++ L R +K Y L+ L +V
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLL-------KSKPYENCLLV------LL------NV- 253
Query: 1165 RNCVRRDAKVIQNFPNSNEVLPSSSDFMSNSNSSSRSNANQSLPKSNQSLPNSNQNLPTS 1224
++AK F + + L T+
Sbjct: 254 -----QNAKAWNAF-----------NLSC-------------------------KILLTT 272
Query: 1225 NQVPSSTDSVSNTNRASPNATNSNQALTN------LTDSVSNTNQESPTSTELAKTSSGG 1278
TD +S + + + LT L + Q+ P T++
Sbjct: 273 RFK-QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP---REVLTTN-- 326
Query: 1279 FGLLHSLLASRSAFRSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVD--SPKGEMGIFV 1336
S++A R T + V+ +K L I ++ P +F
Sbjct: 327 -PRRLSIIAES--IRDGLATWDNWK-HVNCDK------LTTIIESSLNVLEPAEYRKMFD 376
Query: 1337 K-TIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKK-TKQGLVELVLQPNTT 1394
+ ++FP + LL ++ F+ ++ + + K K LVE
Sbjct: 377 RLSVFPPSAHIPTILL----SLIWFDVIK------SDVMVVVNKLHKYSLVEK------- 419
Query: 1395 EADSKEGL----NLQPRLIPRADFTTQIYH-----SYNPTQPRLIPRADFTTQIYHGY 1443
KE ++ L + + + H YN P+ D Y
Sbjct: 420 --QPKESTISIPSIYLELKVKLENEYAL-HRSIVDHYNI--PKTFDSDDLIPPYLDQY 472
Score = 57.9 bits (139), Expect = 2e-08
Identities = 93/721 (12%), Positives = 189/721 (26%), Gaps = 238/721 (33%)
Query: 550 HGNTQSDDGDYEY---IFNFETKLPKLSEDGGDFGCDRV--------SNEVDDDIY---- 594
H + ++ + Y+Y + FE +F C V S E D I
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVD------NFDCKDVQDMPKSILSKEEIDHIIMSKD 59
Query: 595 --ENVEFKFGCIAGRSCPEPPEENSCNRVPES--RPNDESLSENTPSKGRLPALPPHSSL 650
F + +E + E R N + L ++ R P++
Sbjct: 60 AVSGTLRLFWTL------LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM----T 109
Query: 651 DAFCHSGSISVSSVDKPVNSVDK-PVRSV--DKPVNSVDKPVSSVDKP-----VNSMD-- 700
+ + D+ N +V +P + + + + +P ++ +
Sbjct: 110 RMY-------IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGS 161
Query: 701 -KPV--NSV--DKPVRAV---------------DSAFVSPSMNLFYKKVQSQQSLEARGQ 740
K V V+ + L Y+ + S
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 741 GEPQRKSDRPQFTRRMFVKTGAPARADTKSLVSLESLRYHYLVNFCEPNFVIAFFAFTDM 800
R RR+ L+ L N AF
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYE-----NCLLVLL--------NVQNAKAWNAF------ 262
Query: 801 VRKFHPLKTQPVWSWFVSSNNILMRIWVSTLVPNYQVGRRQRNSQTNPSVGNTAGSSTYA 860
N+ +I ++T R V + ++T
Sbjct: 263 --------------------NLSCKILLTT-----------RFK----QVTDFLSAATTT 287
Query: 861 QRKLQIGESQSENGPKRSLQTESPTENGPIVKAAIEIGPQTGTTHFKNAVSSNNIVGNSL 920
L + +L T ++ ++ ++ PQ L
Sbjct: 288 HISL--------DHHSMTL-TPDEVKS--LLLKYLDCRPQ------------------DL 318
Query: 921 ---VTNSHGQIMSSIATPLFTLGNHSPQTSQVASRREETMRSRQSDPLPAVDSRKSQDRK 977
V ++ + +S IA + V + T+ + L + RK DR
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 978 SVRNQVRKAEHVSLKSKAIF----SNEESR----GLSNRHEANRRSKRSSKK----SVEP 1025
SV + H+ ++ + L ++ K S+ +E
Sbjct: 379 SV---FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
Query: 1026 TPAQNDENSLENDLVRALNLALRTGALMSPQNPSAQRPKSFDLEEFAPRAM-------VP 1078
+E +L +V N+ PK+FD ++ P + +
Sbjct: 436 KVKLENEYALHRSIVDHYNI-----------------PKTFDSDDLIPPYLDQYFYSHIG 478
Query: 1079 LHSSSPNIQRKVSS----------LDRKRRSQQNNPNQHRSEDVKAYRSRTEDLKDCLSR 1128
H + +++ L++K R H S A S L+
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRFLEQKIR--------HDSTAWNASGSILNTLQQ---- 526
Query: 1129 TENVNASTNSTKEYRSLV---DTASEVRLDEMGH-VPDVLRNCVR-RDAKVIQ---NFPN 1180
K Y+ + D E ++ + +P + N + + +++ +
Sbjct: 527 ----------LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAED 576
Query: 1181 S 1181
Sbjct: 577 E 577
Score = 47.9 bits (113), Expect = 3e-05
Identities = 86/599 (14%), Positives = 171/599 (28%), Gaps = 189/599 (31%)
Query: 777 LRYHY--LVNFCEPNFV--IAFFAFTDMVRKF-------HPLKTQP--------VWSWFV 817
+Y Y +++ E FV DM + H + ++ W+
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73
Query: 818 SSNNILMRIWVSTLVPNYQ-VGRRQRNSQTNPSVGNTAGSSTY-AQRKLQIGESQSENGP 875
++ + L NY+ + + Q PS T Y QR ++Q
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS-MMT---RMYIEQRDRLYNDNQVF--A 127
Query: 876 KRSLQTESPTENGPIVKAAIEIGPQTGTT-H----F-K-----NAVSS--------NNI- 915
K ++ P + +A +E+ P K + S I
Sbjct: 128 KYNVSRLQPYLK--LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 916 ---VGNSLVTNSHGQIM-------SSIATPLFTLGNHSP----QTSQVASRREETMRSRQ 961
+ N NS ++ I + +HS + + + ++S+
Sbjct: 186 WLNLKNC---NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 962 -----------SDP--LPAVDSR-K----SQDRKSVRNQV--RKAEHVSL-KSKAIFSNE 1000
+ A + K ++ K V + + H+SL + +
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKILLTTRF-KQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 1001 ESRGL-SN---------RHEANRRSKR-----SSKKSVEPTPAQNDENSLENDLVRALNL 1045
E + L E + R + N ++ + L +
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 1046 ALRTGALMSPQNPSAQR---------PKS------------FDLEEFAPRAMV-PLHSSS 1083
+L P+ R P S FD+ + +V LH S
Sbjct: 362 SLNV------LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 1084 -PNIQRKVSSL------DRKRRSQQNNPNQHRSEDVKAYR-SRTEDLKDC---------- 1125
Q K S++ + +N HRS V Y +T D D
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSI-VDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 1126 ------LSRTEN--------------------VNASTNSTKEYRSLVDTASEVRLDEMGH 1159
L E+ + + + S+++T +++ + +
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK-PY 533
Query: 1160 VPDVLRNCVRRDAKV--IQNF-PNSNEVLPSS--SDF----MSNSNSSSRSNANQSLPK 1209
+ D N + + V I +F P E L S +D + + + A++ + +
Sbjct: 534 ICD---NDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 41.4 bits (96), Expect = 0.003
Identities = 79/480 (16%), Positives = 132/480 (27%), Gaps = 160/480 (33%)
Query: 27 TEAPDMDTRSNDGAVSKRKSSTWT--KVAKTFDLMRK---SEARQC-SEAGPSS----QG 76
P M TR + +R + +V +++ R + RQ E P+ G
Sbjct: 102 QRQPSMMTRM---YIEQR-DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157
Query: 77 DGG-----------EDGRMRRRSS---IWRRVGSVQSTQAPKGSSNESQ--CSQ-SQSSP 119
G +++ + W + + S P+ Q Q +
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS---PETVLEMLQKLLYQIDPNWT 214
Query: 120 QRSSQSNNSPQN-NSQSNNSS---QSQRSPQS-------QS---------------TSQS 153
RS S+N +S +S+ Q+ T++
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274
Query: 154 SSQT-PCGSQNKGAIRSD-----LTLSENRPLFSPSLN-------EEVMDMN-------- 192
T + I D LT E + L L+ EV+ N
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 193 -YLYNFKCRRKQNFLLLNDYK-------SLTN----DYKSC---------D----SKSLS 227
+ + N+ +N K SL +Y+ + LS
Sbjct: 335 ESIRDGLATW-DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393
Query: 228 ---NDYKSSDCKSLANDYKLSDCKALANDYKSSDS--MSLVNDYKPSQTNGSTEVTAHRS 282
D SD + N KL + K S S+ + K N E HRS
Sbjct: 394 LIWFDVIKSDVMVVVN--KLHKYSLVEKQPKESTISIPSIYLELKVKLEN---EYALHRS 448
Query: 283 TDLVGTDGKPNLSDVSKPLP---------HI-------------NLPINLY--------- 311
+V P D +P HI L ++
Sbjct: 449 --IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506
Query: 312 ----PTPTVAAMSNLNVPVSLH-HCAYISSNESGYDSDSTT-----RQSEQHSPNSEHFN 361
T A+ S LN L + YI N+ Y+ + E++ S++ +
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566
Score = 37.9 bits (87), Expect = 0.032
Identities = 21/122 (17%), Positives = 37/122 (30%), Gaps = 22/122 (18%)
Query: 177 RPLFSPSLNEEVMDMNYLYNF------KCRRKQNFLLLNDYKSLTNDYKSCDSKSLSNDY 230
+ S L +D Y Y+ + L + + D++ + K +
Sbjct: 457 KTFDSDDLIPPYLD-QYFYSHIGHHLKNIEHPERMTLF---RMVFLDFRFLEQKIRHDST 512
Query: 231 KSSDCKSLANDYKLSDCKALANDYKS----SDSM--SLVNDYKPSQTNGSTEVTAHRSTD 284
+ S+ N L K YK +D LVN + + TD
Sbjct: 513 AWNASGSILNT--LQQLKF----YKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566
Query: 285 LV 286
L+
Sbjct: 567 LL 568
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell
junction, cell adhesion, signaling protein, nucleotide
exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Length = 94
Score = 59.2 bits (143), Expect = 6e-11
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 1306 VSFEKGPG-KKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEP 1364
+ EK + GFS+ + G ++V ++ G A++ GL GDEIL NN
Sbjct: 10 IHIEKSDTAADTYGFSLSSVEED--GIRRLYVNSVKETGLASKKGLKA-GDEILEINNRA 66
Query: 1365 LQGRTHAEAITIFKKTKQGL 1384
+ + GL
Sbjct: 67 ADALNSSMLKDFLSQPSLGL 86
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 57.8 bits (140), Expect = 2e-10
Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 17/101 (16%)
Query: 1294 SRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVE 1353
R + T+ R GK GF+I + + V+ + G A +GL +
Sbjct: 2 MRYRQI--TIPR-------GKDGFGFTI-------CCDSPVRVQAVDSGGPAERAGLQ-Q 44
Query: 1354 GDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTT 1394
D +L N P++ E + ++ LV +
Sbjct: 45 LDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRMVPQ 85
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus}
SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*
Length = 109
Score = 57.1 bits (138), Expect = 6e-10
Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 19/117 (16%)
Query: 1290 SAFRSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGV---------DSPKGEMGIFVKTIF 1340
S + + +T L + + GF + G +P +++++
Sbjct: 2 SDYIIKEKTV--LLQK------KDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVD 53
Query: 1341 PHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTTEAD 1397
G A +GL + GD ++ N + + H + + + ++ + + + T D
Sbjct: 54 EGGVAWRAGLRM-GDFLIEVNGQNVVKVGHRQVVNMIRQG-GNTLMVKVVMVTRHPD 108
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction; NMR
{Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 57.1 bits (138), Expect = 6e-10
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 13/97 (13%)
Query: 1306 VSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPL 1365
+ F G LGF++ +G + V + PH A+ +G EGD I+
Sbjct: 19 IHFTVEEG--DLGFTL-------RGNTPVQVHFLDPHCSASLAGA-KEGDYIVSIQGVDC 68
Query: 1366 QGRTHAEAITIFKKTKQGLVELV---LQPNTTEADSK 1399
+ T +E + + K VE+ L +T+ +K
Sbjct: 69 KWLTVSEVMKLLKSFGGEEVEMKVVSLLDSTSSMHNK 105
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.4 bits (151), Expect = 1e-09
Identities = 90/582 (15%), Positives = 154/582 (26%), Gaps = 217/582 (37%)
Query: 374 DYLSL-PLYLNQGTSVDGTDGAKALGRAGRPDLVARFE---DVPTGDGP--------FEA 421
D S PL L+ G+ E VPT F
Sbjct: 2 DAYSTRPLTLSHGS----------------------LEHVLLVPTASFFIASQLQEQFNK 39
Query: 422 NGAPKAPHANTSATDKSVEDVYDFVEPSSV--LCSSKGGLKCPPNPVLNSVSNLDILERS 479
P T+ D D EP++ L L VS+L +E S
Sbjct: 40 I----LP----EPTEGFAAD--D--EPTTPAELVGK----------FLGYVSSL--VEPS 75
Query: 480 SVKGQTNSNPLLIKATRDFAKDGHLATNDGNSLLAKLHAQPSNQGEAHETYSFI-CFDQS 538
V GQ + +L +F ++ +L ND ++L AKL N +T I + +
Sbjct: 76 KV-GQFD--QVLNLCLTEF-ENCYLEGNDIHALAAKLL--QENDTTLVKTKELIKNYITA 129
Query: 539 NGEKNRIVEMDHGN---TQSDDGDYE-Y-IF----NFETKLPKLSEDGGDFGCDRVSNEV 589
R + + +G+ + IF N + +L +
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD-------------- 175
Query: 590 DDDIYE----NVEFKFGCIAGRSCPEPPEENSCNRV-------------PESRPNDESLS 632
+Y+ V A +V P + P+ + L
Sbjct: 176 ---LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL 232
Query: 633 ENTPSKGRLPALPPHSSLDAFCHSGSISVSSVDKPVNSVDKPVRSVDKPVNSVDKPVSSV 692
S P + + H ++ + + ++ + V++V
Sbjct: 233 SIPIS---CPLI----GVIQLAHY-VVTAKLLGFTPGELRSYLKGATGHSQGL---VTAV 281
Query: 693 DKPVNSMDKPVNSVDKPVRAVDS--AFVSPSMN----LFYKKVQSQQ-----SLEAR--- 738
+ DS +F LF+ V+ + SL
Sbjct: 282 ----------------AIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE 325
Query: 739 -----GQGEP--------------QRKSDR-----PQF---------TRRMFVKTGAPAR 765
+G P Q ++ P + V +G P
Sbjct: 326 DSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPP-- 383
Query: 766 ADTKSLVSLE-SLRYHYL--------VNFCE--PNFVIAF---FAFTDMVRKFH-PL--K 808
+SL L +LR + F E F F + FH L
Sbjct: 384 ---QSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS------PFHSHLLVP 434
Query: 809 TQPVWSWFVSSNNILMRIWVSTL-VPNYQV--GRRQRNSQTN 847
+ + + NN+ + +P Y G R +
Sbjct: 435 ASDLINKDLVKNNVS--FNAKDIQIPVYDTFDGSDLRVLSGS 474
Score = 49.7 bits (118), Expect = 8e-06
Identities = 88/505 (17%), Positives = 161/505 (31%), Gaps = 141/505 (27%)
Query: 1011 ANRRSKRSSKKSVEPT--PAQNDENSLENDLV-RALNLALRTGALMSPQNPSAQRPKSFD 1067
A++ ++ +K EPT A +DE + +LV + L G + S PS FD
Sbjct: 30 ASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFL------GYVSSLVEPSKV--GQFD 81
Query: 1068 ------LEEFAPRAMVPLHSSSPNIQRKVSSLDRKRRSQQNNPNQHRSEDVKAY------ 1115
L EF + +I + L ++ + E +K Y
Sbjct: 82 QVLNLCLTEFENCYL-----EGNDIHALAAKLLQENDTTLVK----TKELIKNYITARIM 132
Query: 1116 --RSRTEDLKDCLSRTENVNASTNSTKEYRSLVDTA-------SEVRLDEM--------G 1158
R + L R + + A ++ +E+
Sbjct: 133 AKRPFDKKSNSALFR----AVGEGNAQLV------AIFGGQGNTDDYFEELRDLYQTYHV 182
Query: 1159 HVPDVLRNCVRRDAKVIQNFPNSNEVLPSSSDFMS-NSNSSSRSNAN--QSLPKSNQSLP 1215
V D+++ +++I+ ++ +V + + N S+ + + S+P S P
Sbjct: 183 LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP---ISCP 239
Query: 1216 NSNQNLPTSNQVPSSTDSVSNTNRASP-NATNSNQALTNLTDSVSNTNQESPTSTELAKT 1274
L Q+ + + +P + + T + + T+ +A+T
Sbjct: 240 -----LIGVIQL-AHYVVTAKLLGFTPGELRSYLKGATGHSQGL-------VTAVAIAET 286
Query: 1275 SSG-GFGLLHSLLASRSAF----RSR---PQTC-EPTLVRVSFEKGPGKKSLGFSIVGGV 1325
S F + A F R P T P+++ S E G S SI
Sbjct: 287 DSWESF-FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN-- 343
Query: 1326 DSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQG-- 1383
+ ++ +V H A + EI L N G + ++ G
Sbjct: 344 -LTQEQVQDYVNKTNSHLPAGKQ------VEISLVN-----GAKNL-VVS-------GPP 383
Query: 1384 --LVELVLQPNTTEADSKEGLNLQPRLIP---RA-DFTTQ---I---YHS--YNPTQPRL 1429
L L L +A S GL+ Q R IP R F+ + + +HS P +
Sbjct: 384 QSLYGLNLTLRKAKAPS--GLD-QSR-IPFSERKLKFSNRFLPVASPFHSHLLVPASDLI 439
Query: 1430 ----------IPRADFTTQIYHGYN 1444
D +Y ++
Sbjct: 440 NKDLVKNNVSFNAKDIQIPVYDTFD 464
Score = 48.5 bits (115), Expect = 2e-05
Identities = 33/219 (15%), Positives = 68/219 (31%), Gaps = 77/219 (35%)
Query: 302 PHINLPINLY----------PTPTVAAMSNLNVPVSLHHCAYISSNESGYDSD---STTR 348
P+ +LP ++ P+P M L++ S +
Sbjct: 315 PNTSLPPSILEDSLENNEGVPSP----M--LSI--------------SNLTQEQVQDYVN 354
Query: 349 QSEQHSPNSEH-----FNFGTPS------PPLIEVGDYLSLPLYLNQGTSVDGTDGAKAL 397
++ H P + N PP L L L + + G D ++
Sbjct: 355 KTNSHLPAGKQVEISLVN--GAKNLVVSGPPQ----SLYGLNLTLRKAKAPSGLDQSRIP 408
Query: 398 GRAGRPDLVARFEDVPTGDGPFEANGAPKAPHAN--TSATDKSVEDVYDFVEPSSVLCSS 455
+ RF +P PF H++ A+D +D + ++V ++
Sbjct: 409 FSERKLKFSNRF--LPVA-SPF---------HSHLLVPASDLINKD----LVKNNVSFNA 452
Query: 456 KGGLKCPPNPVLNSVSNLDILERSSVKGQTNSNPLLIKA 494
K ++ PV ++ D+ R + + ++
Sbjct: 453 K-DIQI---PVYDTFDGSDL--RVL---SGSISERIVDC 482
Score = 43.1 bits (101), Expect = 8e-04
Identities = 25/127 (19%), Positives = 41/127 (32%), Gaps = 40/127 (31%)
Query: 1314 KKSLGFSIVGGV-DSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAE 1372
K + GFSI+ V ++P TI G+ + + E ++F + G+ E
Sbjct: 1654 KDTYGFSILDIVINNPVN------LTIHFGGEKGKR--IRENYSAMIFET-IVDGKLKTE 1704
Query: 1373 AITIFKKTKQGLVELVLQPNTTEADSKEGLNLQPRLIPRADFTTQIYHSYNPTQPRLIPR 1432
IFK+ + + K L+ TQ TQP L
Sbjct: 1705 --KIFKEINEHSTSYTFR------SEKGLLSA-----------TQF------TQPAL--- 1736
Query: 1433 ADFTTQI 1439
+
Sbjct: 1737 --TLMEK 1741
Score = 41.6 bits (97), Expect = 0.002
Identities = 102/664 (15%), Positives = 199/664 (29%), Gaps = 234/664 (35%)
Query: 749 RPQFTRRMFVKTGAPARAD-TKSLVSLESLRY-HYLVNFCEPNFVIAFFAFTDMV-RKFH 805
+ QF + + T A D + L ++ Y+ + EP+ V F ++ +F
Sbjct: 34 QEQFNKILPEPTEGFAADDEPTTPAELVG-KFLGYVSSLVEPSKVGQFDQVLNLCLTEFE 92
Query: 806 PLKTQPVWSWFVSSNNI------LMRIWVST------LVPNY----QVGRRQRNSQTNPS 849
+ ++ N+I L++ +T L+ NY + +R + ++N +
Sbjct: 93 --------NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA 144
Query: 850 VGNTAGS---STYA----QRKLQIGESQS---ENGPKRSLQTESPTENGPIVKAAIEIGP 899
+ G A Q G + E R L +V I+
Sbjct: 145 LFRAVGEGNAQLVAIFGGQ-----GNTDDYFEE---LRDLYQTYH----VLVGDLIKFSA 192
Query: 900 QTGTTHFKNAVSSNNIVGNSLVTNSHG-QIMSSIATPLFTLGNHSPQTSQVASRREETMR 958
+T + + + + + + G I+ + P +++P + S
Sbjct: 193 ETLSELIRTTLDAEKVF-------TQGLNILEWLENP-----SNTPDKDYLLS------- 233
Query: 959 SRQSDPL--------PAVDSRKSQ-DRKSVRNQVRKAEHVSLKSKAIFSNEESRGLSNRH 1009
S PL V ++ +R+ ++ A + S+ + +
Sbjct: 234 IPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA---TGHSQGLVT----------- 279
Query: 1010 EANRRSKRSSKKSVEPTPAQNDENSLENDLVRALNLALRTGA---LMSPQN--PSAQRPK 1064
+V + E+ + + +A+ + G P P +
Sbjct: 280 ------------AVAIAETDSWESFFVS-VRKAITVLFFIGVRCYEAYPNTSLPPSILED 326
Query: 1065 SFDLEEFAPRAMVPLHSSSPNIQRKVSSLDRKR-RSQQNNPNQHRSEDVKAYRSRTEDLK 1123
S + E P M L +S+L +++ + N N H + S
Sbjct: 327 SLENNEGVPSPM--LS---------ISNLTQEQVQDYVNKTNSHLPAGKQVEIS------ 369
Query: 1124 DCLSRTENVNASTNSTKEYRSLVDTASEVRLDEMGHVPD------VLRNCVRRDAKVIQN 1177
VN + N LV + G LR + + + Q+
Sbjct: 370 -------LVNGAKN-------LVVS---------GPPQSLYGLNLTLRK-AKAPSGLDQS 405
Query: 1178 ---F----PN-SNEVLPSSSDFMSNSNSSSRSNANQSLPKSNQSLPNSNQNLPTSNQVPS 1229
F SN LP +S F S+ + N+ L K+N S + +P
Sbjct: 406 RIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP------- 458
Query: 1230 STDSVSNTNRASPNATNSNQALTNLTDSVSNTNQESPTSTELAKTSSGGFGLLHSLLASR 1289
V +T S+ L L+ S + ++
Sbjct: 459 ----VYDTF------DGSD--LRVLSGS-----------------------ISERIV--D 481
Query: 1290 SAFRSR---PQTC--EPTLVRVSFEKGPGKKS------------LGFSIV--GGVD-SPK 1329
R T + T + + F GPG S G ++ G +D +P
Sbjct: 482 CIIRLPVKWETTTQFKATHI-LDF--GPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPD 538
Query: 1330 GEMG 1333
+ G
Sbjct: 539 DDYG 542
Score = 41.2 bits (96), Expect = 0.004
Identities = 43/263 (16%), Positives = 81/263 (30%), Gaps = 81/263 (30%)
Query: 1210 SNQSLPNSNQNLPTSNQVPSSTDSVSNTNRASPNATNSNQALTNLTDSVSNTNQESPTST 1269
S + L S+ +L VP+++ +++ + N L T+ + PT+
Sbjct: 5 STRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKI-----LPEPTEGF--AADDEPTTP 57
Query: 1270 -ELAKTSSGGFGLLHSLLASRSAFRSRPQTCEPTLVRVS---FEKG--PGKK--SLGFSI 1321
EL G F L + ++S Q + ++ + FE G +L +
Sbjct: 58 AELV----GKF-LGY--VSSLVEPSKVGQFDQ--VLNLCLTEFENCYLEGNDIHALAAKL 108
Query: 1322 VGGVDSPKGEMGIFVKTIF--------PHGQAAESGLLVEGDEILLFNNEPLQGRTHAEA 1373
+ D+ + +K P + + S L E G +A+
Sbjct: 109 LQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE----------G--NAQL 156
Query: 1374 ITIFKKTKQGLVELVLQPNTTEADSKEGLNLQPRLIPRADFTTQIYHSYNPTQPRLIPRA 1433
+ IF QG + +E L+ +Y +Y+ LI +
Sbjct: 157 VAIF--GGQGNTDDYF---------EE---LR-----------DLYQTYHVLVGDLIKFS 191
Query: 1434 ------------DFTTQIYHGYN 1444
D G N
Sbjct: 192 AETLSELIRTTLDAEKVFTQGLN 214
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion;
2.90A {Homo sapiens}
Length = 468
Score = 61.1 bits (147), Expect = 1e-09
Identities = 32/122 (26%), Positives = 43/122 (35%), Gaps = 14/122 (11%)
Query: 1306 VSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPL 1365
V F KG S+G + GG D GIFV + AA+ GL EGD+IL NN
Sbjct: 5 VKFRKG---DSVGLRLAGGNDV-----GIFVAGVLEDSPAAKEGLE-EGDQILRVNNVDF 55
Query: 1366 QGRTHAEAITIFKKTKQGLVELVLQPNTTEADSKEGLNLQPRLIPRADFTTQIYHSYNPT 1425
EA+ +G +L K+ F + + Y
Sbjct: 56 TNIIREEAVLFLLDLPKGEEVTILAQK-----KKDVYRRIVESDVGDSFYIRTHFEYEKE 110
Query: 1426 QP 1427
P
Sbjct: 111 SP 112
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 59.6 bits (143), Expect = 4e-09
Identities = 28/182 (15%), Positives = 47/182 (25%), Gaps = 8/182 (4%)
Query: 1208 PKSNQSLPNSNQNLPTSNQVPSSTDSVSNTNRASPNATNSNQALTNLTDSVSNTNQESPT 1267
++Q + + V + A A + QA S QE
Sbjct: 116 RSASQDCIETTPGAQEGKKQYKMICHVFESEDAQLIAQSIGQA-------FSVAYQEFLR 168
Query: 1268 STELAKTSSGGFGLLHSLLASRSAFRSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDS 1327
+ + + + + + LG +V
Sbjct: 169 ANGINPEDLSQKEYSDIINTQEMYNDDLIHFSNSENCKELQLEKHKGEILGVVVVESGWG 228
Query: 1328 PKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVEL 1387
+ + + G AA SG L GD+I+ N L G A I K K
Sbjct: 229 S-ILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVK 287
Query: 1388 VL 1389
+
Sbjct: 288 LN 289
Score = 51.5 bits (122), Expect = 1e-06
Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 13/93 (13%)
Query: 1299 CEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEIL 1358
C P + LGFS+ G + ++ G A G+ V G I+
Sbjct: 293 CPPVTTVLIKRPDLKY-QLGFSVQNG----------IICSLMRGGIAERGGVRV-GHRII 340
Query: 1359 LFNNEPLQGRTHAEAITIFKKTKQGLVELVLQP 1391
N + + H + + + G + + P
Sbjct: 341 EINGQSVVATAHEKIVQALSNSV-GEIHMKTMP 372
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 54.5 bits (131), Expect = 7e-09
Identities = 34/135 (25%), Positives = 52/135 (38%), Gaps = 18/135 (13%)
Query: 1265 SPTSTELAKTSSG-GFGLLHSLLASRSAFRSRPQTCEPTLVRVSFEKGPGKKSLGFSIVG 1323
P + L +TS G GF L H F P E G
Sbjct: 8 GPKTVTLKRTSQGFGFTLRH--------FIVYPPESAIQFSYKDEENGNRGG-------K 52
Query: 1324 GVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQG 1383
+ + IFVK + G A E+GL GD I+ N E + G+T+++ I + + +
Sbjct: 53 QRNRLEPMDTIFVKQVKEGGPAFEAGLCT-GDRIIKVNGESVIGKTYSQVIALIQNSD-T 110
Query: 1384 LVELVLQPNTTEADS 1398
+EL + P + S
Sbjct: 111 TLELSVMPKDSGPSS 125
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ,
guanine-nucleotide releasing factor, phosphoprotein, SH3
domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 54.6 bits (131), Expect = 7e-09
Identities = 15/98 (15%), Positives = 37/98 (37%), Gaps = 11/98 (11%)
Query: 1313 GKKSLGFSIVGGV---------DSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNE 1363
+ GF + G +P +++++ G A +GL + GD ++ N +
Sbjct: 37 DSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRM-GDFLIEVNGQ 95
Query: 1364 PLQGRTHAEAITIFKKTKQGLVELVLQPNTTEADSKEG 1401
+ H + + + ++ + + + T D E
Sbjct: 96 NVVKVGHRQVVNMIRQG-GNTLMVKVVMVTRHPDMDEA 132
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper
chaperone for superoxide dismutase, neuronal adaptor,
protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 90
Score = 52.8 bits (127), Expect = 1e-08
Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 13/101 (12%)
Query: 1293 RSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLV 1352
+T + V + + LGFS+ G+ + ++ G A G+ V
Sbjct: 3 HHHLETMGN-VTTVLIRRPDLRYQLGFSVQNGI----------ICSLMRGGIAERGGVRV 51
Query: 1353 EGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNT 1393
G I+ N + + H + + I G + + P
Sbjct: 52 -GHRIIEINGQSVVATPHEKIVHILSNA-VGEIHMKTMPAA 90
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 55.9 bits (134), Expect = 1e-08
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 7/98 (7%)
Query: 1305 RVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEP 1364
+ +KGP GF++ K + G F++++ P A SGL D I+ N
Sbjct: 12 LCTMKKGP--SGYGFNLHSD----KSKPGQFIRSVDPDSPAEASGLRA-QDRIVEVNGVC 64
Query: 1365 LQGRTHAEAITIFKKTKQGLVELVLQPNTTEADSKEGL 1402
++G+ H + ++ + LV+ T E K +
Sbjct: 65 MEGKQHGDVVSAIRAGGDETKLLVVDRETDEFFKKCRV 102
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain,
arhgef11, KIAA0380, structural genomics, NPPSFA; NMR
{Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 52.3 bits (126), Expect = 2e-08
Identities = 18/82 (21%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 1313 GKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAE 1372
+ GF++ G+ + V+++ P G A ++G+ GD I+ N + +H E
Sbjct: 17 DQHGFGFTV-------SGDRIVLVQSVRPGGAAMKAGVKE-GDRIIKVNGTMVTNSSHLE 68
Query: 1373 AITIFKKTKQGLVELVLQPNTT 1394
+ + K V L L +++
Sbjct: 69 VVKLIKSGAY--VALTLLGSSS 88
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 51.1 bits (123), Expect = 4e-08
Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 20/98 (20%)
Query: 1295 RPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEG 1354
P+T T+ + +GF G + +I AA +GLL
Sbjct: 4 DPRTI--TMHK------DSTGHVGFIFKNGK----------ITSIVKDSSAARNGLLT-E 44
Query: 1355 DEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPN 1392
I N + + G ++ I + +V + + P
Sbjct: 45 HNICEINGQNVIGLKDSQIADILSTSG-TVVTITIMPA 81
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 118
Score = 39.4 bits (91), Expect = 0.001
Identities = 23/115 (20%), Positives = 36/115 (31%), Gaps = 6/115 (5%)
Query: 1288 SRSAFRSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFP-HGQAA 1346
S P + +S + GFS+ S + VK + H
Sbjct: 5 SSGVQDQLPYSVTL----ISMPATTECR-RGFSVTVESASSNYATTVQVKEVNRMHISPN 59
Query: 1347 ESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTTEADSKEG 1401
+ GD IL N P++ E K+T Q L L+ + + G
Sbjct: 60 NRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQTSQTLQLLIEHDPVPQRLDQSG 114
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 40.9 bits (95), Expect = 0.001
Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 15/92 (16%)
Query: 947 SQVASRREE--TMRSRQSDPLPAVDSRKSQD-RKSVRNQVRKAEHVSLKSKAIFSNEESR 1003
+Q +E ++R R+ Q R + K + KA EE
Sbjct: 75 AQADRLTQEPESIRKW----------REEQRKRLQELDAASKVMEQEWREKAKKDLEE-- 122
Query: 1004 GLSNRHEANRRSKRSSKKSVEPTPAQNDENSL 1035
+ E ++K +++ + + Q D + +
Sbjct: 123 WNQRQSEQVEKNKINNRIADKAFYQQPDADII 154
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane
protein; 1.65A {Homo sapiens}
Length = 209
Score = 36.2 bits (83), Expect = 0.050
Identities = 21/113 (18%), Positives = 36/113 (31%), Gaps = 11/113 (9%)
Query: 1292 FRSRPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLL 1351
+ S+ T V S G+ LG SI E V + + AA +GL
Sbjct: 73 YSSKTLELRETSVTPS-NLWGGQGLLGVSIRFCSFDGANENVWHVLEVESNSPAALAGLR 131
Query: 1352 VEGDEILLFNNEPLQGRTHAEAI----------TIFKKTKQGLVELVLQPNTT 1394
D I+ + + I ++ E+++ PN+
Sbjct: 132 PHSDYIIGADTVMNESEDLFSLIETHEAKPLKLYVYNTDTDNCREVIITPNSA 184
Score = 33.5 bits (76), Expect = 0.33
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 1330 GEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVL 1389
G G V + + +GL D I+ N L + + + K + V++++
Sbjct: 14 GTEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLN-KDNDTLKDLLKANVEKPVKMLI 72
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein,
PDZ domain, hydrolase, inner membrane, membrane,
metal-binding; HET: MLY MSE; 0.98A {Escherichia coli}
PDB: 3id2_A 3id3_A 3id4_A
Length = 91
Score = 30.5 bits (69), Expect = 0.85
Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 1336 VKTIFPHGQAAESGLLVEGDEILLFNNEPLQG--------RTHAEAITIFKKTKQG-LVE 1386
++ + P+ A+ +GL GD I+ + +PL R + + +QG +
Sbjct: 8 LENVQPNSAASXAGLQA-GDRIVXVDGQPLTQWVTFVMLVRDNPGXSLALEIERQGSPLS 66
Query: 1387 LVLQPNTTEAD 1397
L L P + +
Sbjct: 67 LTLIPESXPGN 77
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease,
trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A
3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Length = 448
Score = 32.7 bits (75), Expect = 1.0
Identities = 16/100 (16%), Positives = 35/100 (35%), Gaps = 3/100 (3%)
Query: 1295 RPQTCEPTLVRVSFEKGPGKKSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEG 1354
+ L + S + + + + G+ V + AA+ G L +G
Sbjct: 346 KQVNVNLELQQSSQNQVDSSSIFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIG-LKKG 404
Query: 1355 DEILLFNNEPLQGRTHAEAITIFKKTKQGLVELVLQPNTT 1394
D I+ N + + + AE + L + + ++T
Sbjct: 405 DVIIGANQQAV--KNIAELRKVLDSKPSVLALNIQRGDST 442
>3pkv_A Toxoflavin lyase (TFLA); metalloenzyme, vicinal oxygen chelate
superfamily; 1.34A {Paenibacillus polymyxa} PDB: 3pkw_A
3pkx_A* 3oul_A 3oum_A*
Length = 252
Score = 32.3 bits (73), Expect = 1.0
Identities = 19/108 (17%), Positives = 32/108 (29%), Gaps = 10/108 (9%)
Query: 348 RQSEQHSPNSEHFNFGTPSPPLIEVGDYLSLPLYLNQGTSVDGTDGAKALGRAGR---PD 404
R + + H + E +LS L D + P
Sbjct: 72 RAAADGTKPFYHIAINIAANHFQEGKAWLSGFGELLTENDEDQAYFPFFNAYSCYVEDPS 131
Query: 405 -----LVARFEDVPTGDGPFEANGAPKAPHANTSATDKSVEDVYDFVE 447
L++R + P D PF A+ N + +D VE ++
Sbjct: 132 GNIIELISRQQAAPVLDKPFSADQLLSIGEINITTSD--VEQAATRLK 177
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia
coli} SCOP: d.151.1.1
Length = 268
Score = 31.7 bits (73), Expect = 1.6
Identities = 9/47 (19%), Positives = 14/47 (29%), Gaps = 18/47 (38%)
Query: 797 FTDMVRKFHPLKTQPVWSWFVSSNNILMRIWVSTLVPNYQVGRRQRN 843
D R +P +T +SWF +Y+ N
Sbjct: 195 LVDTFRHANP-QTADRFSWF-----------------DYRSKGFDDN 223
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high
affinity ligand, protein BIND; 1.70A {Homo sapiens}
Length = 112
Score = 30.0 bits (68), Expect = 1.7
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 1326 DSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQ 1366
D P+ GI+V+ + P+ + G+ +GD I+ N PL
Sbjct: 29 DFPEVSSGIYVQEVAPNSPSQRGGIQ-DGDIIVKVNGRPLV 68
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 31.6 bits (71), Expect = 2.5
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Query: 1179 PNSNEVLPSSSDFMSNSNSSSRSNANQSLPKSNQSLPNSNQNLPTSNQVPSSTDSVSNTN 1238
P S P+S + S S S ++ + S P S P S PTS ++ S S T
Sbjct: 1558 PTSPSYSPTSPSYSPTSPSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPT- 1615
Query: 1239 RASPNATNSNQALTNLTDSVSNTNQE-SPTSTELAKTSSG 1277
SP+ + ++ + + + S S T+ SPTS + TS
Sbjct: 1616 --SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1653
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein,
hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1
PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A
1soz_A 1vcw_A 2r3y_A
Length = 318
Score = 31.0 bits (71), Expect = 2.5
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 1324 GVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEP 1364
G+D +G I V + P G AA +G+ V D I+ +N+P
Sbjct: 239 GIDQLQG---IVVNEVSPDGPAANAGIQV-NDLIISVDNKP 275
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB:
3nzi_A 3nwu_A 2ytw_A 2joa_A
Length = 332
Score = 30.7 bits (70), Expect = 3.9
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 1315 KSLGFSIVGGVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQ 1366
K L D G ++ + P A GL E D I+ N + +
Sbjct: 240 KELKDRHRDFPDVISG---AYIIEVIPDTPAEAGGLK-ENDVIISINGQSVV 287
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone,
hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A
4a9g_A
Length = 436
Score = 29.9 bits (68), Expect = 7.3
Identities = 18/104 (17%), Positives = 35/104 (33%), Gaps = 18/104 (17%)
Query: 1324 GVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQG-----RTHAEA----- 1373
+D +G FV + P +A++G+ GD I N +PL A
Sbjct: 258 NLDVQRG---AFVSEVLPGSGSAKAGVKA-GDIITSLNGKPLNSFAELRSRIATTEPGTK 313
Query: 1374 --ITIF--KKTKQGLVELVLQPNTTEADSKEGLNLQPRLIPRAD 1413
+ + K + V L +++ + L+ +
Sbjct: 314 VKLGLLRNGKPLEVEVTLDTSTSSSASAEMITPALEGATLSDGQ 357
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 29.7 bits (66), Expect = 8.1
Identities = 22/180 (12%), Positives = 40/180 (22%), Gaps = 11/180 (6%)
Query: 835 YQVGRRQRNSQTNPSVGNTAGSSTYAQRKLQIGESQSENGPKRSLQTESPTE-------- 886
+Q +RQ N + Y + K + +E
Sbjct: 230 FQEAKRQLNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRN 289
Query: 887 -NGPIVKAAIEIGPQTGTTHFKNAVSSNNIVGNSLVTNSHGQIMSSIATPLFTLGNHSPQ 945
NG I K E + N + + + + I +
Sbjct: 290 TNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMV--FQMGETGV 347
Query: 946 TSQVASRREETMRSRQSDPLPAVDSRKSQDRKSVRNQVRKAEHVSLKSKAIFSNEESRGL 1005
S R + + SR + +V F +E + L
Sbjct: 348 AGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYKFCLKEHKAL 407
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 30.0 bits (67), Expect = 8.1
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 10/99 (10%)
Query: 1179 PNSNEVLPSSSDFMSNSNSSSRSNANQSLPKSNQSLPNSNQNLPTSNQVPSSTDSVSNTN 1238
P S P+S + S S S ++ + S P S P S PTS ++ S S T
Sbjct: 1615 PTSPSYSPTSPSYSPTSPSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPT- 1672
Query: 1239 RASPNATNSNQALTNLTDSVSNTNQESPTSTELAKTSSG 1277
SP+ + ++ + + + SPTS + TS
Sbjct: 1673 --SPSYSPTSPSYS------PTSPSYSPTSPSYSPTSPS 1703
>3rrc_A Duffy receptor; duffy binding like, receptor recognition, duffy
antigen RECE chemokines, cell invasion; HET: EDO; 1.95A
{Plasmodium vivax} PDB: 2c6j_A
Length = 317
Score = 29.5 bits (66), Expect = 8.3
Identities = 12/79 (15%), Positives = 26/79 (32%), Gaps = 2/79 (2%)
Query: 196 NFKCRRKQNFLLL-NDYKSLTNDYKSCDSKSLS-NDYKSSDCKSLANDYKLSDCKALAND 253
+ R+K + +L N + S+ N K + ++ D + ++
Sbjct: 233 QWITRKKNQWDVLSNKFISVKNAEKVQTAGIVTPYDILKQELDEFNEVAFENEINKRDGA 292
Query: 254 YKSSDSMSLVNDYKPSQTN 272
Y S+ K +Q
Sbjct: 293 YIELCVCSVEEAKKNTQEV 311
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone,
DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Length = 345
Score = 29.5 bits (67), Expect = 9.4
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 1324 GVDSPKGEMGIFVKTIFPHGQAAESGLLVEGDEILLFNNEPLQ 1366
+D +G FV + P +A++G+ GD I N +PL
Sbjct: 258 NLDVQRG---AFVSEVLPGSGSAKAGVKA-GDIITSLNGKPLN 296
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.309 0.125 0.353
Gapped
Lambda K H
0.267 0.0610 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 19,524,860
Number of extensions: 1101269
Number of successful extensions: 1909
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1700
Number of HSP's successfully gapped: 218
Length of query: 1454
Length of database: 6,701,793
Length adjustment: 106
Effective length of query: 1348
Effective length of database: 3,742,167
Effective search space: 5044441116
Effective search space used: 5044441116
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (28.7 bits)