BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6071
         (185 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1BX4|A Chain A, Structure Of Human Adenosine Kinase At 1.50 Angstroms
 pdb|2I6A|A Chain A, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
           Iodotubercidin
 pdb|2I6A|B Chain B, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
           Iodotubercidin
 pdb|2I6A|C Chain C, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
           Iodotubercidin
 pdb|2I6A|D Chain D, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
           Iodotubercidin
 pdb|2I6B|A Chain A, Human Adenosine Kinase In Complex With An Acetylinic
           Inhibitor
 pdb|2I6B|B Chain B, Human Adenosine Kinase In Complex With An Acetylinic
           Inhibitor
          Length = 345

 Score = 28.5 bits (62), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 9/29 (31%), Positives = 21/29 (72%)

Query: 28  LNHSSPLVNQYYKPEFLRLVPPLHLIWLN 56
           LN S+P ++Q+YK   ++++P + +++ N
Sbjct: 195 LNLSAPFISQFYKESLMKVMPYVDILFGN 223


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.130    0.365 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,629,820
Number of Sequences: 62578
Number of extensions: 155046
Number of successful extensions: 292
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 283
Number of HSP's gapped (non-prelim): 9
length of query: 185
length of database: 14,973,337
effective HSP length: 93
effective length of query: 92
effective length of database: 9,153,583
effective search space: 842129636
effective search space used: 842129636
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)