Query psy6071
Match_columns 185
No_of_seqs 94 out of 96
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 16:55:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6071.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6071hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zoq_C CREB-binding protein, i 83.4 0.57 1.9E-05 30.8 1.9 30 82-112 4-33 (47)
2 3b2a_A TON_1937, putative unch 70.5 4.1 0.00014 35.3 4.1 55 125-179 48-112 (265)
3 1kbh_B CREB-binding protein, n 60.3 2.7 9.1E-05 28.8 0.8 33 79-112 8-40 (59)
4 2o71_A Death domain-containing 59.5 22 0.00074 26.4 5.9 76 88-163 17-101 (115)
5 2of5_A Death domain-containing 58.3 15 0.00053 27.2 4.9 77 89-165 18-103 (114)
6 2of5_H Leucine-rich repeat and 54.3 23 0.00078 26.1 5.2 80 90-173 8-97 (118)
7 1y88_A Hypothetical protein AF 47.3 7.8 0.00027 31.8 1.8 58 65-128 121-191 (199)
8 2l9b_A MRNA 3'-END-processing 46.1 9.2 0.00032 29.0 1.9 52 84-142 41-92 (109)
9 1vqr_A Hypothetical protein CJ 39.1 55 0.0019 26.9 5.8 60 77-144 14-75 (297)
10 4eba_G RNA15, KLLA0F09383P; HA 35.8 54 0.0018 26.4 5.0 54 84-144 46-99 (174)
11 3m1t_A Putative phosphohydrola 32.3 21 0.00071 29.3 2.1 56 81-144 4-59 (275)
12 3pt8_B Hemoglobin III; oxygen 28.9 1E+02 0.0035 22.5 5.3 63 91-171 2-76 (152)
13 2blf_B SORB, sulfite\:cytochro 28.3 29 0.001 23.5 2.0 24 84-107 56-79 (81)
14 3pt8_A Hemoglobin II; oxygen c 27.8 1.6E+02 0.0055 21.5 6.2 63 91-171 2-76 (152)
15 3mix_A Flagellar biosynthesis 26.4 35 0.0012 30.4 2.6 63 52-115 149-213 (382)
16 1mba_A Myoglobin; oxygen stora 25.7 1E+02 0.0035 22.3 4.8 48 91-155 1-49 (147)
17 1x9f_A Globin IV, extracellula 23.0 2.1E+02 0.007 21.1 6.1 66 89-172 3-80 (151)
18 1g2r_A Hypothetical cytosolic 22.9 81 0.0028 22.9 3.6 29 79-107 62-90 (100)
19 3a98_B Engulfment and cell mot 22.8 19 0.00065 29.4 0.2 52 122-178 127-185 (203)
20 3g46_A Globin-1; oxygen transp 22.5 2.3E+02 0.0078 20.7 7.4 61 92-170 9-78 (146)
21 4a5p_A Protein MXIA, protein V 22.5 47 0.0016 29.7 2.7 63 52-115 154-218 (383)
22 3pg6_A E3 ubiquitin-protein li 22.1 38 0.0013 27.2 1.8 22 73-94 84-105 (159)
23 2x49_A INVA, invasion protein 21.9 70 0.0024 27.9 3.6 36 79-114 131-167 (333)
24 3q5w_A Protein CUT8; proteasom 21.8 60 0.0021 27.6 3.1 31 124-155 73-103 (245)
25 4b4y_A Neuroglobin; transport 21.5 2E+02 0.007 21.1 5.8 51 90-157 6-57 (154)
26 3ubc_A Hemoglobin-like flavopr 21.0 1.4E+02 0.0048 21.1 4.6 37 130-170 21-58 (131)
27 1r8j_A KAIA; circadian clock p 20.7 55 0.0019 28.6 2.6 41 88-128 182-223 (289)
28 1it2_A Hemoglobin; hagfish, de 20.6 1.7E+02 0.0057 21.5 5.1 65 92-173 10-83 (146)
29 1out_A Hemoglobin I; heme, oxy 20.1 1.8E+02 0.0063 21.2 5.2 63 93-173 3-72 (143)
No 1
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=83.42 E-value=0.57 Score=30.76 Aligned_cols=30 Identities=37% Similarity=0.542 Sum_probs=24.6
Q ss_pred HHHHHHHHhCcCCHHHHHHHHHHHhcCcchh
Q psy6071 82 KKLMTRAFKSALTLQQQQHLLAELQHDSKLV 112 (185)
Q Consensus 82 r~Lm~kA~~~~L~~~qqq~ll~~L~~Dpklv 112 (185)
++|| +.+++|=+++|||+++.-|+.+|.|.
T Consensus 4 qqLl-~tlksp~sp~qqqqvl~ILksnPqLM 33 (47)
T 1zoq_C 4 QDLL-RTLKSPSSPQQQQQVLNILKSNPQLM 33 (47)
T ss_dssp HHHH-HTCCSCCCHHHHHHHHHHHHTCHHHH
T ss_pred HHHH-HHhcCCCCHHHHHHHHHHHHcCHHHH
Confidence 3444 56899999999999999999988754
No 2
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=70.53 E-value=4.1 Score=35.26 Aligned_cols=55 Identities=11% Similarity=0.293 Sum_probs=46.4
Q ss_pred HhhhChHHHHHHHHHH----hcCCChhHHHHHHhhh------hhhhhHHHHHHHHHHhccccccc
Q psy6071 125 LVENNPLIAIEVLLKL----IQSNHITEYFSVLVNM------EMSLHSMEVVNSVLVNMEMSLHS 179 (185)
Q Consensus 125 LVEnNP~IAievLlkL----~~s~~i~eY~~~Lv~m------d~SLhSmEVVNrLtt~v~LP~eF 179 (185)
-|.-|-.+|+|=++|. +....+.+.|+.++.. .+++++|++.|+|..++.|+.+-
T Consensus 48 ~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 48 TTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred HHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 4457889999999988 4566789999999955 79999999999999999998653
No 3
>1kbh_B CREB-binding protein, nuclear receptor coactivator; nuclear hormone receptors, ACTR, CBP, transcription; NMR {Mus musculus} SCOP: a.153.1.1 PDB: 2c52_A 2kkj_A 2l14_A
Probab=60.28 E-value=2.7 Score=28.75 Aligned_cols=33 Identities=33% Similarity=0.471 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhCcCCHHHHHHHHHHHhcCcchh
Q psy6071 79 VEAKKLMTRAFKSALTLQQQQHLLAELQHDSKLV 112 (185)
Q Consensus 79 ~e~r~Lm~kA~~~~L~~~qqq~ll~~L~~Dpklv 112 (185)
..+.+|| +.+|++=+++|||+++.-|+.+|.|.
T Consensus 8 ~aLqqLl-~tlksp~speqqqqvl~ILksNPqLM 40 (59)
T 1kbh_B 8 SALQDLL-RTLKSPSSPQQQQQVLNILKSNPQLM 40 (59)
T ss_dssp THHHHHH-HHHHSCTTTTCSTHHHHHHTTSHHHH
T ss_pred HHHHHHH-HHhcCCCCHHHHHHHHHHHHhCHHHH
Confidence 3445554 56899999999999999999888754
No 4
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=59.45 E-value=22 Score=26.45 Aligned_cols=76 Identities=17% Similarity=0.247 Sum_probs=57.8
Q ss_pred HHhCcCCHHHHHHHHHHHhcCcc-hhhhcCCCCCchhHHhhhCh----HHHHHHHHHHhcC----CChhHHHHHHhhhhh
Q psy6071 88 AFKSALTLQQQQHLLAELQHDSK-LVYHIGLTPAKLPDLVENNP----LIAIEVLLKLIQS----NHITEYFSVLVNMEM 158 (185)
Q Consensus 88 A~~~~L~~~qqq~ll~~L~~Dpk-lv~~~gltp~kLP~LVEnNP----~IAievLlkL~~s----~~i~eY~~~Lv~md~ 158 (185)
-+.+.+++.+.+.|.+.|-.|.+ ++.+.|++...+-.+-.+|| .-+.++|.+-... .-......+|-.++.
T Consensus 17 ~~~~~~t~~~l~~Ia~~LG~~Wk~LAR~LGlse~dId~I~~~~p~dl~eq~~qmL~~W~~r~G~~AT~~~L~~AL~~~~l 96 (115)
T 2o71_A 17 ILNSSPSDRQINQLAQRLGPEWEPMVLSLGLSQTDIYRCKANHPHNVQSQVVEAFIRWRQRFGKQATFQSLHNGLRAVEV 96 (115)
T ss_dssp GGGSCCCHHHHHHHHHHCCTTHHHHHHHTTCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHTTC
T ss_pred hccCCCCHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCcCcHHHHHHHHHHHcCC
Confidence 35678899999999999999988 88899999999999998997 4455555444332 234557777777777
Q ss_pred hhhHH
Q psy6071 159 SLHSM 163 (185)
Q Consensus 159 SLhSm 163 (185)
....+
T Consensus 97 ~~~v~ 101 (115)
T 2o71_A 97 DPSLL 101 (115)
T ss_dssp CTHHH
T ss_pred CHHHH
Confidence 66544
No 5
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=58.32 E-value=15 Score=27.23 Aligned_cols=77 Identities=17% Similarity=0.228 Sum_probs=58.1
Q ss_pred HhCcCCHHHHHHHHHHHhcCcc-hhhhcCCCCCchhHHhhhCh----HHHHHHHHHHhc----CCChhHHHHHHhhhhhh
Q psy6071 89 FKSALTLQQQQHLLAELQHDSK-LVYHIGLTPAKLPDLVENNP----LIAIEVLLKLIQ----SNHITEYFSVLVNMEMS 159 (185)
Q Consensus 89 ~~~~L~~~qqq~ll~~L~~Dpk-lv~~~gltp~kLP~LVEnNP----~IAievLlkL~~----s~~i~eY~~~Lv~md~S 159 (185)
+.+.+++.+.+.|.+.|-.|.+ ++.+.||+...+-.+-.+|| .-+.++|.+-.+ ..-......+|-.+++.
T Consensus 18 ~~~~~t~~~l~~Ia~~lG~~Wk~LAR~LGlse~dId~I~~~~p~~l~eq~~qmL~~W~~r~G~~AT~~~L~~AL~~~~l~ 97 (114)
T 2of5_A 18 LNSSPSDRQINQLAQRLGPEWEPMVLSLGLSQTDIYRCKANHPHNVQSQVVEAFIRWRQRFGKQATFQSLHNGLRAVEVD 97 (114)
T ss_dssp TTSCCCHHHHHHHHHTCCSTHHHHHHTTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHTTCC
T ss_pred hcCCCCHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCcCcHHHHHHHHHHHcCCC
Confidence 4577889999999999999988 88899999999999999997 455565544433 23345577777777777
Q ss_pred hhHHHH
Q psy6071 160 LHSMEV 165 (185)
Q Consensus 160 LhSmEV 165 (185)
...+.-
T Consensus 98 ~~v~~~ 103 (114)
T 2of5_A 98 PSLLLH 103 (114)
T ss_dssp THHHHH
T ss_pred HHHHHH
Confidence 655543
No 6
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=54.31 E-value=23 Score=26.11 Aligned_cols=80 Identities=13% Similarity=0.133 Sum_probs=57.5
Q ss_pred hCcCCHHHHHHHHHHHhcCcc-hhhhcCCCCCchhHHhhhChH----HHHHHHHHHhcCC---C--hhHHHHHHhhhhhh
Q psy6071 90 KSALTLQQQQHLLAELQHDSK-LVYHIGLTPAKLPDLVENNPL----IAIEVLLKLIQSN---H--ITEYFSVLVNMEMS 159 (185)
Q Consensus 90 ~~~L~~~qqq~ll~~L~~Dpk-lv~~~gltp~kLP~LVEnNP~----IAievLlkL~~s~---~--i~eY~~~Lv~md~S 159 (185)
.++|++.+...|.+.+-.|.+ ++.+.||+...+-.+-..||. =+.++|..-.+.. + +.....+|..+...
T Consensus 8 ~~~lt~~~l~~ia~~lg~dWk~LAr~Lg~s~~~I~~I~~~~~~~l~eq~~~mL~~W~~~~g~~~Atv~~L~~aL~~~~r~ 87 (118)
T 2of5_H 8 TGFLTQSNLLSVAGRLGLDWPAVALHLGVSYREVQRIRHEFRDDLDEQIRHMLFSWAERQAGQPGAVGLLVQALEQSDRQ 87 (118)
T ss_dssp TCCCCHHHHHHHHHTCCTTHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHTTSSCSSHHHHHHHHHHHTTCH
T ss_pred cCCCCHHHHHHHHHHHhhHHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHcCcH
Confidence 568999999999999999998 888999999999999988875 5566665444433 2 23455566665553
Q ss_pred hhHHHHHHHHHHhc
Q psy6071 160 LHSMEVVNSVLVNM 173 (185)
Q Consensus 160 LhSmEVVNrLtt~v 173 (185)
.+++.+-..+
T Consensus 88 ----diae~l~~~i 97 (118)
T 2of5_H 88 ----DVAEEVRAVL 97 (118)
T ss_dssp ----HHHHHHHHHT
T ss_pred ----HHHHHHHHHH
Confidence 3555555444
No 7
>1y88_A Hypothetical protein AF1548; APC5567, structural genomics, protein structure INIT PSI, midwest center for structural genomics center, MCSG; 1.85A {Archaeoglobus fulgidus} SCOP: a.60.4.3 c.52.1.30
Probab=47.30 E-value=7.8 Score=31.80 Aligned_cols=58 Identities=10% Similarity=0.162 Sum_probs=42.6
Q ss_pred ccccCCccccCCchHHHHHHHHHHHhC-----cCCHHHHHHHH-------HHHhc-CcchhhhcCCCCCchhHHhhh
Q psy6071 65 IAYDSTMCVSNSAGVEAKKLMTRAFKS-----ALTLQQQQHLL-------AELQH-DSKLVYHIGLTPAKLPDLVEN 128 (185)
Q Consensus 65 ~~wD~sm~~~~~~~~e~r~Lm~kA~~~-----~L~~~qqq~ll-------~~L~~-Dpklv~~~gltp~kLP~LVEn 128 (185)
..||+. .+..+++++.++-.- .|+.+|.+.|+ .++.. ||.++.+.|++.++-.+++|.
T Consensus 121 i~wd~p------~g~~L~~~i~~~~l~pi~~l~~~~~e~~~l~~~~~v~~k~~~~~~~~~l~~~gi~~~~~~~i~~~ 191 (199)
T 1y88_A 121 TGWSYP------EKEGIEVLLESKGLYPITILRIDKEVLDELVRAGLVFCRDVVSAGEEKLREIGLSAKKAREVIAE 191 (199)
T ss_dssp ECSSCS------TTTSHHHHHHTTTCCBGGGSSCCHHHHHHHHHTTCCBHHHHHHHCHHHHHHTTCCHHHHHHHHHH
T ss_pred EECCCC------chHHHHHHHHHcCCCCeEEEeeCHHHHhhhhcCCcEEEehhhhcChHHHHHcCCcHHHHHHHHHH
Confidence 446655 577899999998333 57889988874 34555 888999999998887776653
No 8
>2l9b_A MRNA 3'-END-processing protein RNA15; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=46.13 E-value=9.2 Score=28.98 Aligned_cols=52 Identities=15% Similarity=0.241 Sum_probs=34.9
Q ss_pred HHHHHHhCcCCHHHHHHHHHHHhcCcchhhhcCCCCCchhHHhhhChHHHHHHHHHHhc
Q psy6071 84 LMTRAFKSALTLQQQQHLLAELQHDSKLVYHIGLTPAKLPDLVENNPLIAIEVLLKLIQ 142 (185)
Q Consensus 84 Lm~kA~~~~L~~~qqq~ll~~L~~Dpklv~~~gltp~kLP~LVEnNP~IAievLlkL~~ 142 (185)
.|++++ +.|+++|+-.|+..++. + +.-.|++.-.|.+.||++|+.++..++.
T Consensus 41 ~IS~~L-aslpp~Ql~eiL~qmK~---~---~~~nP~~a~~LL~q~PQLAyAl~QalL~ 92 (109)
T 2l9b_A 41 MISSEL-AKKPKEVQLKFLQKFQE---W---TRAHPEDAASLLELCPQLSFVTAELLLT 92 (109)
T ss_dssp HHHHHH-HTSCHHHHHHHHHHHHH---H---HHHCHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHH-hcCCHHHHHHHHHHHHH---H---HHhCHHHHHHHHHHCchHHHHHHHHHHH
Confidence 444544 46899998888887774 1 2234556667888888888887655544
No 9
>1vqr_A Hypothetical protein CJ0248; HD-domain/pdease-like fold, structural genomics, joint cente structural genomics, JCSG; 2.25A {Campylobacter jejuni subsp} SCOP: a.211.1.3
Probab=39.07 E-value=55 Score=26.91 Aligned_cols=60 Identities=15% Similarity=0.200 Sum_probs=49.4
Q ss_pred chHHHHHHHHHHHhCcCCHHHHHHHHHHHhcCcchhhhcCCCCC--chhHHhhhChHHHHHHHHHHhcCC
Q psy6071 77 AGVEAKKLMTRAFKSALTLQQQQHLLAELQHDSKLVYHIGLTPA--KLPDLVENNPLIAIEVLLKLIQSN 144 (185)
Q Consensus 77 ~~~e~r~Lm~kA~~~~L~~~qqq~ll~~L~~Dpklv~~~gltp~--kLP~LVEnNP~IAievLlkL~~s~ 144 (185)
.|...+.++.+.-+=|-.+.-..+|++.+.++. .+.+ ++-++|+..|.++..+ +|+.||+
T Consensus 14 ~~~~~~~~~~~~~~lp~~~~~~~~l~~~~~~~~-------~~~~~~~l~~~i~~Dp~Ls~~l-Lr~aNS~ 75 (297)
T 1vqr_A 14 IGDMNELLLKSVEVLPPLPDTVSKLRKYVSEAN-------SNIETMKVAEIISSDPLMTAKL-LQLANSP 75 (297)
T ss_dssp TTHHHHHHHHHTSSCCCCHHHHHHHHHHHHHC---------CCCHHHHHHHHHTCHHHHHHH-HHHHTSG
T ss_pred hcchHHHHHhccccCCCCHHHHHHHHHHHcCCC-------CCCCHHHHHHHHHHCHHHHHHH-HHHHccc
Confidence 467789999998888888888889998887532 5677 8999999999999996 6888886
No 10
>4eba_G RNA15, KLLA0F09383P; HAT domain, heat repeat, monkeytail, CLP1, PCF11, structural RNA binding protein complex; 3.30A {Kluyveromyces lactis}
Probab=35.79 E-value=54 Score=26.42 Aligned_cols=54 Identities=20% Similarity=0.271 Sum_probs=39.8
Q ss_pred HHHHHHhCcCCHHHHHHHHHHHhcCcchhhhcCCCCCchhHHhhhChHHHHHHHHHHhcCC
Q psy6071 84 LMTRAFKSALTLQQQQHLLAELQHDSKLVYHIGLTPAKLPDLVENNPLIAIEVLLKLIQSN 144 (185)
Q Consensus 84 Lm~kA~~~~L~~~qqq~ll~~L~~Dpklv~~~gltp~kLP~LVEnNP~IAievLlkL~~s~ 144 (185)
.|.++ -+.+++.|.-.++..+|. ++. =.|++.-+|.+.||.+|+.++..++...
T Consensus 46 ~IS~~-Ls~lpp~QL~eiL~qmK~---l~~---~nP~~ar~LL~~nPQLayAl~QAlL~mg 99 (174)
T 4eba_G 46 CISSE-LGKLQKDQQMALLKVIQH---FCK---DDKETFVALLEEAPQLSYAIAELLLSNG 99 (174)
T ss_dssp HHHHH-HTTSCHHHHHHHHHHHHH---GGG---C--CCHHHHHHSCTHHHHHHHHHHHHTS
T ss_pred HHHHH-HhcCCHHHHHHHHHHHHH---HHH---hCHHHHHHHHHHCchHHHHHHHHHHHhC
Confidence 44444 578999999999999985 332 3577888999999999999876665543
No 11
>3m1t_A Putative phosphohydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE GOL; 1.62A {Shewanella amazonensis} SCOP: a.211.1.0
Probab=32.28 E-value=21 Score=29.34 Aligned_cols=56 Identities=16% Similarity=0.276 Sum_probs=43.4
Q ss_pred HHHHHHHHHhCcCCHHHHHHHHHHHhcCcchhhhcCCCCCchhHHhhhChHHHHHHHHHHhcCC
Q psy6071 81 AKKLMTRAFKSALTLQQQQHLLAELQHDSKLVYHIGLTPAKLPDLVENNPLIAIEVLLKLIQSN 144 (185)
Q Consensus 81 ~r~Lm~kA~~~~L~~~qqq~ll~~L~~Dpklv~~~gltp~kLP~LVEnNP~IAievLlkL~~s~ 144 (185)
.++|+++.-+=|--|.-..+|++.+.++. .+.+++-++|+..|.++..+ +|+.||+
T Consensus 4 ~~~l~~~~~~lP~lp~~~~~l~~~~~~~~-------~~~~~la~~I~~Dp~Ls~~l-Lr~aNS~ 59 (275)
T 3m1t_A 4 SAALLQKVDELPRLPKAIAELLDVVNNED-------STVKAVSEKLSHDPVLSARV-LRLANSA 59 (275)
T ss_dssp CHHHHTTGGGSCCCCHHHHHHHHHHHCTT-------CCHHHHHHHHHTCHHHHHHH-HHHHTTC
T ss_pred HHHHHHhHhhCCCCcHHHHHHHHHHcCCC-------CCHHHHHHHHHHCHHHHHHH-HHHhcch
Confidence 45677777777777777888888887532 56778999999999999986 5788886
No 12
>3pt8_B Hemoglobin III; oxygen carrier, oxygen transport; HET: HEM; 1.76A {Lucina pectinata} PDB: 3pt7_B*
Probab=28.93 E-value=1e+02 Score=22.55 Aligned_cols=63 Identities=21% Similarity=0.196 Sum_probs=40.9
Q ss_pred CcCCHHHHHHHHHHHhcCcchhhhcCCCCCchhHHhhhC-hHHHHHHHHHHhc-CCChhHHHHH-Hhhhh---------h
Q psy6071 91 SALTLQQQQHLLAELQHDSKLVYHIGLTPAKLPDLVENN-PLIAIEVLLKLIQ-SNHITEYFSV-LVNME---------M 158 (185)
Q Consensus 91 ~~L~~~qqq~ll~~L~~Dpklv~~~gltp~kLP~LVEnN-P~IAievLlkL~~-s~~i~eY~~~-Lv~md---------~ 158 (185)
++||+.|.+.|.+-... |..| ..+..+++.+++. .|+...||.. +-+.+ +
T Consensus 2 ~~Ls~~~~~~i~~sw~~------------------v~~~~~~~g~~~y~~lF~~~P~~k~~F~~~f~~~~~~~l~~n~~~ 63 (152)
T 3pt8_B 2 SGLTGPQKAALKSSWSR------------------FMNNAVTNGTNFYMDLFKAYPDTLTPFKSLFQNVSFNQMTNHPTM 63 (152)
T ss_dssp CCCCHHHHHHHHHHHHH------------------HHTTHHHHHHHHHHHHHHHCGGGGGGGTTTTTTCCHHHHTTCHHH
T ss_pred CCCCHHHHHHHHHHHHH------------------HHhCHHhHHHHHHHHHHHHChhHHHHhhHHHcCCCHHHHhcCHHH
Confidence 57888888877766652 2223 4588888888887 5788889886 54333 4
Q ss_pred hhhHHHHHHHHHH
Q psy6071 159 SLHSMEVVNSVLV 171 (185)
Q Consensus 159 SLhSmEVVNrLtt 171 (185)
.-|..=|++.|..
T Consensus 64 ~~h~~~v~~~l~~ 76 (152)
T 3pt8_B 64 KAQSLVFCNGMSS 76 (152)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5566555554433
No 13
>2blf_B SORB, sulfite\:cytochrome C oxidoreductase subunit B; sulfite oxidase, molybdopterin, C-type cytochrome, heme, electron transport; HET: MSS HEC; 1.8A {Starkeya novella} PDB: 2bpb_B* 2c9x_B* 2ca3_B* 2ca4_B*
Probab=28.29 E-value=29 Score=23.47 Aligned_cols=24 Identities=8% Similarity=0.206 Sum_probs=19.7
Q ss_pred HHHHHHhCcCCHHHHHHHHHHHhc
Q psy6071 84 LMTRAFKSALTLQQQQHLLAELQH 107 (185)
Q Consensus 84 Lm~kA~~~~L~~~qqq~ll~~L~~ 107 (185)
=|.+++...|++.|.+.|+++|.+
T Consensus 56 ~M~~~~g~~ls~~e~~~I~~YL~~ 79 (81)
T 2blf_B 56 KMIKVYHAPVDEADAKAIADYLAK 79 (81)
T ss_dssp HHHHTSCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHH
Confidence 355566789999999999999975
No 14
>3pt8_A Hemoglobin II; oxygen carrier, oxygen transport; HET: HEM; 1.76A {Lucina pectinata} SCOP: a.1.1.0 PDB: 3pi1_A* 2olp_A* 3pi3_A* 3pi4_A* 3pt7_A* 3pi2_A*
Probab=27.77 E-value=1.6e+02 Score=21.45 Aligned_cols=63 Identities=14% Similarity=0.158 Sum_probs=42.6
Q ss_pred CcCCHHHHHHHHHHHhcCcchhhhcCCCCCchhHHhhhC-hHHHHHHHHHHhc-CCChhHHHHH-Hhhh---------hh
Q psy6071 91 SALTLQQQQHLLAELQHDSKLVYHIGLTPAKLPDLVENN-PLIAIEVLLKLIQ-SNHITEYFSV-LVNM---------EM 158 (185)
Q Consensus 91 ~~L~~~qqq~ll~~L~~Dpklv~~~gltp~kLP~LVEnN-P~IAievLlkL~~-s~~i~eY~~~-Lv~m---------d~ 158 (185)
++||+.|.+.|.+-... |..| ..++.+++.+++. .|+...||.. +-+. ++
T Consensus 2 ~~Lt~~~~~~i~~sw~~------------------v~~~~~~~g~~~y~rlF~~~P~~k~~F~~~f~~~~~~~l~~~~~~ 63 (152)
T 3pt8_A 2 TTLTNPQKAAIRSSWSK------------------FMDNGVSNGQGFYMDLFKAHPETLTPFKSLFGGLTLAQLQDNPKM 63 (152)
T ss_dssp CCCCHHHHHHHHHHHHH------------------HHTTHHHHHHHHHHHHHHHCGGGGGGGHHHHTTSCHHHHTTCHHH
T ss_pred CCCCHHHHHHHHHHHHH------------------HHHhHHHHHHHHHHHHHHhCchHHHHhHHHHcCCCHHHHhcCHHH
Confidence 57899998887776652 2222 5688889999988 5889999987 4322 44
Q ss_pred hhhHHHHHHHHHH
Q psy6071 159 SLHSMEVVNSVLV 171 (185)
Q Consensus 159 SLhSmEVVNrLtt 171 (185)
.-|..=|++.|..
T Consensus 64 ~~h~~~v~~~l~~ 76 (152)
T 3pt8_A 64 KAQSLVFCNGMSS 76 (152)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5566556554433
No 15
>3mix_A Flagellar biosynthesis protein FLHA; flagella biosynthesis, protein transport, type III secretion; 2.30A {Bacillus subtilis}
Probab=26.43 E-value=35 Score=30.43 Aligned_cols=63 Identities=11% Similarity=0.174 Sum_probs=30.4
Q ss_pred hhhhcCCCCCCccccccCCcc-ccCCchHHHHHHHHHHHhCcCCHHHHHHHHHHHhcCc-chhhhc
Q psy6071 52 LIWLNLVDPSEHKIAYDSTMC-VSNSAGVEAKKLMTRAFKSALTLQQQQHLLAELQHDS-KLVYHI 115 (185)
Q Consensus 52 l~Wlnp~~~~~h~~~wD~sm~-~~~~~~~e~r~Lm~kA~~~~L~~~qqq~ll~~L~~Dp-klv~~~ 115 (185)
-.|++++.. +.--.-.|+.. ..+--..-+-++|.+=.-.=|..+|-|.|++.|+++. +||+++
T Consensus 149 a~WI~~~~~-e~A~~~Gytvvd~~tViaTHLsevi~~~a~ellg~qEvq~LLd~l~~~~P~LVeEl 213 (382)
T 3mix_A 149 AKWISEAVK-DEADMLGYTVVDPASVVSTHITEKIKQHAHELIGRQETKQLIDHLKESYPVLVEEV 213 (382)
T ss_dssp ------------------CCBCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHH
T ss_pred eEeeCHhhH-HHHHHCCCEEEcHHHHHHHHHHHHHHHhHHHHhCHHHHHHHHHHHHHHChHHHHHh
Confidence 489999765 22223333321 1111224566777777778899999999999998753 366643
No 16
>1mba_A Myoglobin; oxygen storage; HET: HEM; 1.60A {Aplysia limacina} SCOP: a.1.1.2 PDB: 2fal_A* 3mba_A* 4mba_A* 5mba_A* 2fam_A* 1dm1_A*
Probab=25.74 E-value=1e+02 Score=22.34 Aligned_cols=48 Identities=10% Similarity=0.180 Sum_probs=30.7
Q ss_pred CcCCHHHHHHHHHHHhcCcchhhhcCCCCCchhHHhhhChHHHHHHHHHHhc-CCChhHHHHHHhh
Q psy6071 91 SALTLQQQQHLLAELQHDSKLVYHIGLTPAKLPDLVENNPLIAIEVLLKLIQ-SNHITEYFSVLVN 155 (185)
Q Consensus 91 ~~L~~~qqq~ll~~L~~Dpklv~~~gltp~kLP~LVEnNP~IAievLlkL~~-s~~i~eY~~~Lv~ 155 (185)
+.||+.|.+.|.+-... +-.+-..+..+++.+++. .|+...||...-+
T Consensus 1 ~~Lt~~~~~~v~~sw~~-----------------v~~~~~~~g~~~~~rlF~~~P~~k~~F~~~~~ 49 (147)
T 1mba_A 1 XSLSAAEADLAGKSWAP-----------------VFANKNANGLDFLVALFEKFPDSANFFADFKG 49 (147)
T ss_dssp -CCCHHHHHHHHHHHHH-----------------HHHTHHHHHHHHHHHHHHHCGGGGGGCTTTTT
T ss_pred CCCCHHHHHHHHHHHHH-----------------HHhcHHHhHHHHHHHHHHhCchHHHhhHhhcC
Confidence 35777777776665542 222335677888888876 5778888865433
No 17
>1x9f_A Globin IV, extracellular; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_A*
Probab=23.00 E-value=2.1e+02 Score=21.09 Aligned_cols=66 Identities=14% Similarity=0.078 Sum_probs=43.4
Q ss_pred HhCcCCHHHHHHHHHHHhcCcchhhhcCCCCCchhHHhhhC------hHHHHHHHHHHhc-CCChhHHHHHHhhh-----
Q psy6071 89 FKSALTLQQQQHLLAELQHDSKLVYHIGLTPAKLPDLVENN------PLIAIEVLLKLIQ-SNHITEYFSVLVNM----- 156 (185)
Q Consensus 89 ~~~~L~~~qqq~ll~~L~~Dpklv~~~gltp~kLP~LVEnN------P~IAievLlkL~~-s~~i~eY~~~Lv~m----- 156 (185)
....||+.|.+.|.+-.. .|+.| ..++.+++.+++. .|+...||...-.+
T Consensus 3 ~~~~ls~~~~~~V~~sw~------------------~v~~~~~~~~~~~~g~~~~~rlF~~~P~~k~~F~~~~~~~~~n~ 64 (151)
T 1x9f_A 3 DEDCCSYEDRREIRHIWD------------------DVWSSSFTDRRVAIVRAVFDDLFKHYPTSKALFERVKIDEPESG 64 (151)
T ss_dssp --CCCCHHHHHHHHHHHH------------------HHSCCSSSHHHHHHHHHHHHHHHHHCGGGGGGGTTTTTTSTTSS
T ss_pred ccccCCHHHHHHHHHHHH------------------HHHcccccchHHHHHHHHHHHHHHHCHHHHHhhhcccCCCCCCH
Confidence 367788888887776655 23334 6788899999887 58888899866433
Q ss_pred hhhhhHHHHHHHHHHh
Q psy6071 157 EMSLHSMEVVNSVLVN 172 (185)
Q Consensus 157 d~SLhSmEVVNrLtt~ 172 (185)
++.-|..=|++.|...
T Consensus 65 ~~~~h~~~v~~al~~~ 80 (151)
T 1x9f_A 65 EFKSHLVRVANGLKLL 80 (151)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344666566655443
No 18
>1g2r_A Hypothetical cytosolic protein; NUSA-INFB operon, structural genomics, PSI, protein structure initiative; 1.35A {Streptococcus pneumoniae} SCOP: d.192.1.1
Probab=22.90 E-value=81 Score=22.92 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhCcCCHHHHHHHHHHHhc
Q psy6071 79 VEAKKLMTRAFKSALTLQQQQHLLAELQH 107 (185)
Q Consensus 79 ~e~r~Lm~kA~~~~L~~~qqq~ll~~L~~ 107 (185)
+.-+..+.+||+.+.++...+.|.++++.
T Consensus 62 A~kkk~l~Ralk~~v~~~~y~~L~~~l~~ 90 (100)
T 1g2r_A 62 AKKKKVFNRSFSMEVEESFYDELIAYVDH 90 (100)
T ss_dssp HHHHTHHHHHHTSCCCHHHHHHHHHHHHH
T ss_pred HHHHCHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 33467999999999999999999999865
No 19
>3a98_B Engulfment and cell motility protein 1; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A
Probab=22.79 E-value=19 Score=29.38 Aligned_cols=52 Identities=13% Similarity=0.185 Sum_probs=38.4
Q ss_pred hhHHhhhChHHHHHHH--HHHh-----cCCChhHHHHHHhhhhhhhhHHHHHHHHHHhcccccc
Q psy6071 122 LPDLVENNPLIAIEVL--LKLI-----QSNHITEYFSVLVNMEMSLHSMEVVNSVLVNMEMSLH 178 (185)
Q Consensus 122 LP~LVEnNP~IAievL--lkL~-----~s~~i~eY~~~Lv~md~SLhSmEVVNrLtt~v~LP~e 178 (185)
.=+||-.|...|..-+ ++.+ .|.+-.++++.|.+|++.++-+++ ..+++|.+
T Consensus 127 ~L~fvA~s~~~~~~W~DGL~~Llg~~~~S~et~~~v~~Ll~m~lklrLLdl-----e~v~ip~~ 185 (203)
T 3a98_B 127 QLNFIAPDKHEYCIWTDGLNALLGKDMMSDLTRNDLDTLLSMEIKLRLLDL-----ENIQIPDA 185 (203)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHTGGG-----TTCCCCSS
T ss_pred eEEEecCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcc-----cCCcCCCC
Confidence 3388999988887744 3333 244667899999999999998887 46677754
No 20
>3g46_A Globin-1; oxygen transport, allostery, oxygen affinity, cytoplasm, heme, iron, metal-binding, oxygen storage/transport, oxygen binding; HET: HEM; 0.91A {Scapharca inaequivalvis} SCOP: a.1.1.2 PDB: 1nxf_A* 3g4q_A* 3g4r_A* 3g4u_A* 3g4v_A* 3g4w_A* 3g4y_A* 3g52_A* 3g53_A* 3uhg_A* 3uhs_A* 3uhk_A* 3uhi_A* 3uhn_A* 3ugy_A* 2auo_A* 2aup_A* 3uhr_A* 3uh5_A* 3uh3_A* ...
Probab=22.51 E-value=2.3e+02 Score=20.65 Aligned_cols=61 Identities=15% Similarity=0.282 Sum_probs=41.8
Q ss_pred cCCHHHHHHHHHHHhcCcchhhhcCCCCCchhHHhhhC-hHHHHHHHHHHhc-CCChhHHHHHHhhhh-------hhhhH
Q psy6071 92 ALTLQQQQHLLAELQHDSKLVYHIGLTPAKLPDLVENN-PLIAIEVLLKLIQ-SNHITEYFSVLVNME-------MSLHS 162 (185)
Q Consensus 92 ~L~~~qqq~ll~~L~~Dpklv~~~gltp~kLP~LVEnN-P~IAievLlkL~~-s~~i~eY~~~Lv~md-------~SLhS 162 (185)
+||+.|.+.|.+-.. .|+.| ..+..+++.+++. .|+...||..+-++. +.-|.
T Consensus 9 ~Lt~~~~~~I~~sw~------------------~v~~~~~~~g~~~~~rlF~~~P~~k~~F~~~~~~~~~~~n~~~~~h~ 70 (146)
T 3g46_A 9 QLTADVKKDLRDSWK------------------VIGSDKKGNGVALMTTLFADNQETIGYFKRLGDVSQGMANDKLRGHS 70 (146)
T ss_dssp TCCHHHHHHHHHHHH------------------HHGGGHHHHHHHHHHHHHHHCGGGGGGGGGGCCGGGGGGCHHHHHHH
T ss_pred cCCHHHHHHHHHHHH------------------HHHcCHHHHHHHHHHHHHHHCHHHHHHHHHHcCCCCcccCHHHHHHH
Confidence 899999888877665 23334 5688899999998 588899998663333 23465
Q ss_pred HHHHHHHH
Q psy6071 163 MEVVNSVL 170 (185)
Q Consensus 163 mEVVNrLt 170 (185)
.=|++.|.
T Consensus 71 ~~v~~al~ 78 (146)
T 3g46_A 71 ITLMYALQ 78 (146)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 21
>4a5p_A Protein MXIA, protein VIRH; protein transport, type three secretion, export apparatus; HET: MLY; 3.15A {Shigella flexneri}
Probab=22.50 E-value=47 Score=29.66 Aligned_cols=63 Identities=10% Similarity=0.268 Sum_probs=33.7
Q ss_pred hhhhcCCCCCCccccccCCccc-cCCchHHHHHHHHHHHhCcCCHHHHHHHHHHHhcCcc-hhhhc
Q psy6071 52 LIWLNLVDPSEHKIAYDSTMCV-SNSAGVEAKKLMTRAFKSALTLQQQQHLLAELQHDSK-LVYHI 115 (185)
Q Consensus 52 l~Wlnp~~~~~h~~~wD~sm~~-~~~~~~e~r~Lm~kA~~~~L~~~qqq~ll~~L~~Dpk-lv~~~ 115 (185)
-.|++++.. +.--.-.|+..- .+--..-+.++|.+=.-.=|..+|-|.|++.|+++.. ||+++
T Consensus 154 A~WI~~~~~-e~A~~~GytVvd~~tViaTHLsevik~~a~ellg~QEvq~LLd~L~~~~P~LVeEl 218 (383)
T 4a5p_A 154 ISWVDVSYT-ENLTNIDAXIXSAQDEFYHQLSQALLNNINEIFGIQETKNMLDQFENRYPDLLXEV 218 (383)
T ss_dssp EEEEEC-------------CBCHHHHHHHHHHHHHHTTGGGTSCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred eEeeCHhhH-HHHHHCCCCCCCHHHHHHHHHHHHHHHhHHHHhCHHHHHHHHHHHHHhChHHHHHH
Confidence 479999865 222333444221 1112244556666666677999999999999987643 55543
No 22
>3pg6_A E3 ubiquitin-protein ligase DTX3L; DNA-damage, metal-binding, nucleus, phosphorylation, chromatin regulator, UBL conjugation pathway, zinc-finger; HET: CIT; 1.70A {Homo sapiens}
Probab=22.05 E-value=38 Score=27.18 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=18.5
Q ss_pred ccCCchHHHHHHHHHHHhCcCC
Q psy6071 73 VSNSAGVEAKKLMTRAFKSALT 94 (185)
Q Consensus 73 ~~~~~~~e~r~Lm~kA~~~~L~ 94 (185)
-++..+.++.+|+++||..+|.
T Consensus 84 Pdn~eGr~VL~LL~~AF~~rLi 105 (159)
T 3pg6_A 84 PDNKEGRKVLKLLYRAFDQKLI 105 (159)
T ss_dssp EESHHHHHHHHHHHHHHHTTCS
T ss_pred CCCHHHHHHHHHHHHHHHcCCE
Confidence 3566889999999999998874
No 23
>2x49_A INVA, invasion protein INVA; protein transport, transport, pathogenesis; 1.50A {Salmonella enterica subsp} PDB: 2x4a_A* 3lw9_A
Probab=21.95 E-value=70 Score=27.87 Aligned_cols=36 Identities=17% Similarity=0.252 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhCcCCHHHHHHHHHHHhcCcc-hhhh
Q psy6071 79 VEAKKLMTRAFKSALTLQQQQHLLAELQHDSK-LVYH 114 (185)
Q Consensus 79 ~e~r~Lm~kA~~~~L~~~qqq~ll~~L~~Dpk-lv~~ 114 (185)
.-+.+++.+-.-.=|..+|-|.+++.|+++.. ||++
T Consensus 131 tHl~evi~~~a~ellg~qEvq~Lld~l~~~~p~LveE 167 (333)
T 2x49_A 131 HCLAVTLARNVNEYFGIQETKHMLDQLEAKFPDLLKE 167 (333)
T ss_dssp HHHHHHHHHTGGGTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhHHHHhCHHHHHHHHHHHHHHChHHHHH
Confidence 45667778878888999999999999987543 4443
No 24
>3q5w_A Protein CUT8; proteasome, tether, chromosome, cell cycle, dimer, NOVE; 2.75A {Schizosaccharomyces pombe} PDB: 3q5x_A
Probab=21.85 E-value=60 Score=27.63 Aligned_cols=31 Identities=16% Similarity=0.299 Sum_probs=20.7
Q ss_pred HHhhhChHHHHHHHHHHhcCCChhHHHHHHhh
Q psy6071 124 DLVENNPLIAIEVLLKLIQSNHITEYFSVLVN 155 (185)
Q Consensus 124 ~LVEnNP~IAievLlkL~~s~~i~eY~~~Lv~ 155 (185)
+|++.+|.|+-+| .+++..+.+..++++|-.
T Consensus 73 ~L~~~HPel~qeI-~~~~P~Psl~~al~~L~~ 103 (245)
T 3q5w_A 73 QCVEKHPDLARDI-RGILPAPSMDTCVETLRK 103 (245)
T ss_dssp HHHHHCTHHHHHH-HTTSCCCCHHHHHHHHHH
T ss_pred HHHHhCchHHHHH-hhcCCCCCHHHHHHHHHH
Confidence 4667888888877 455666766666665543
No 25
>4b4y_A Neuroglobin; transport protein, nervous system evolution, globin evolutio cnidarian, metazoan; HET: HEM; 2.30A {Symsagittifera roscoffensis}
Probab=21.49 E-value=2e+02 Score=21.08 Aligned_cols=51 Identities=16% Similarity=0.205 Sum_probs=35.6
Q ss_pred hCcCCHHHHHHHHHHHhcCcchhhhcCCCCCchhHHhhhChHHHHHHHHHHhc-CCChhHHHHHHhhhh
Q psy6071 90 KSALTLQQQQHLLAELQHDSKLVYHIGLTPAKLPDLVENNPLIAIEVLLKLIQ-SNHITEYFSVLVNME 157 (185)
Q Consensus 90 ~~~L~~~qqq~ll~~L~~Dpklv~~~gltp~kLP~LVEnNP~IAievLlkL~~-s~~i~eY~~~Lv~md 157 (185)
+..||+.|.+.|.+-... +-.+-..++.+++.+++. .|+...||..+-+++
T Consensus 6 ~m~Ls~~~~~~I~~sw~~-----------------v~~~~~~~g~~~y~rlF~~~P~~k~~F~~~~~~~ 57 (154)
T 4b4y_A 6 AMQVSEEQQSLIMEDVQV-----------------LLPNYDDFVEDVLQQFMEENPETFQIFPWADASK 57 (154)
T ss_dssp CCCCCHHHHHHHHHHHHH-----------------HGGGHHHHHHHHHHHHHHHCTTHHHHSTTCCTTS
T ss_pred cCCCCHHHHHHHHHHHHH-----------------HHcCHHHHHHHHHHHHHHHCHhHHHHhHHhcCCC
Confidence 356888888887766652 212336788888888887 588889998655554
No 26
>3ubc_A Hemoglobin-like flavoprotein; oxygen-bound, autoxidation, nanotemplate, langmuir-blodgett, films, oxygen transport; HET: HEM; 1.65A {Methylacidiphilum infernorum V4} PDB: 3ubv_A* 3s1i_A* 3s1j_A*
Probab=20.99 E-value=1.4e+02 Score=21.12 Aligned_cols=37 Identities=14% Similarity=0.175 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHhc-CCChhHHHHHHhhhhhhhhHHHHHHHHH
Q psy6071 130 PLIAIEVLLKLIQ-SNHITEYFSVLVNMEMSLHSMEVVNSVL 170 (185)
Q Consensus 130 P~IAievLlkL~~-s~~i~eY~~~Lv~md~SLhSmEVVNrLt 170 (185)
..++.+++.+++. .|+...||.. |+.-|..-|++.|.
T Consensus 21 ~~~g~~fy~rlf~~~P~~k~~F~~----d~~~h~~~l~~al~ 58 (131)
T 3ubc_A 21 NEIGLLFYANLFKEEPTVSVLFQN----PISSQSRKLMQVLG 58 (131)
T ss_dssp HHHHHHHHHHHHHHCGGGGGGCCS----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChHHHHHccc----cHHHHHHHHHHHHH
Confidence 6677888888886 6788888876 56666665655444
No 27
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=20.67 E-value=55 Score=28.57 Aligned_cols=41 Identities=20% Similarity=0.239 Sum_probs=33.3
Q ss_pred HHhCcCCHHHHHHHHHHHhcCcc-hhhhcCCCCCchhHHhhh
Q psy6071 88 AFKSALTLQQQQHLLAELQHDSK-LVYHIGLTPAKLPDLVEN 128 (185)
Q Consensus 88 A~~~~L~~~qqq~ll~~L~~Dpk-lv~~~gltp~kLP~LVEn 128 (185)
-|-..|++.|+|.+++.|+.|.+ ++-+..=++..+-+-|++
T Consensus 182 ~F~rnl~~~ErqeLl~~Lk~~YR~IlL~YF~~d~~~Nq~ID~ 223 (289)
T 1r8j_A 182 RFLRNLPAYESQKLHQAMQTSYREIVLSYFSPNSNLNQSIDN 223 (289)
T ss_dssp GSTTTSCHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 34566999999999999999999 777777778777766665
No 28
>1it2_A Hemoglobin; hagfish, deoxy form, oxygen storage/transport complex; HET: HEM; 1.60A {Eptatretus burgeri} SCOP: a.1.1.2 PDB: 1it3_A*
Probab=20.64 E-value=1.7e+02 Score=21.49 Aligned_cols=65 Identities=12% Similarity=0.195 Sum_probs=40.4
Q ss_pred cCCHHHHHHHHHHHhcCcchhhhcCCCCCchhHHhhhChHHHHHHHHHHhc-CCChhHHHHHH--------hhhhhhhhH
Q psy6071 92 ALTLQQQQHLLAELQHDSKLVYHIGLTPAKLPDLVENNPLIAIEVLLKLIQ-SNHITEYFSVL--------VNMEMSLHS 162 (185)
Q Consensus 92 ~L~~~qqq~ll~~L~~Dpklv~~~gltp~kLP~LVEnNP~IAievLlkL~~-s~~i~eY~~~L--------v~md~SLhS 162 (185)
.||+.|.+.|.+-... +-.+-..++.+++.+++. .|+...||..+ -+=++.-|.
T Consensus 10 ~Lt~~~~~~V~~sw~~-----------------v~~~~~~~g~~~~~rlF~~~P~~k~~F~~f~~~~~~l~~n~~~~~h~ 72 (146)
T 1it2_A 10 TLTDGDKKAINKIWPK-----------------IYKEYEQYSLNILLRFLKCFPQAQASFPKFSTKKSNLEQDPEVKHQA 72 (146)
T ss_dssp CCCHHHHHHHHHHHHH-----------------HHTTHHHHHHHHHHHHHHHCGGGGGGCTTTTTCCSCGGGCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-----------------HHcCHHHHHHHHHHHHHHHCHHHHHHccccCCCHHHHhcCHHHHHHH
Confidence 3777777766665542 112235677888888876 57788888765 333455666
Q ss_pred HHHHHHHHHhc
Q psy6071 163 MEVVNSVLVNM 173 (185)
Q Consensus 163 mEVVNrLtt~v 173 (185)
.=|++.|...+
T Consensus 73 ~~v~~al~~~v 83 (146)
T 1it2_A 73 VVIFNKVNEII 83 (146)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666665443
No 29
>1out_A Hemoglobin I; heme, oxygen transport, respiratory protein, erythrocyte; HET: HEM; 2.30A {Oncorhynchus mykiss} SCOP: a.1.1.2 PDB: 1ouu_A*
Probab=20.14 E-value=1.8e+02 Score=21.21 Aligned_cols=63 Identities=14% Similarity=0.228 Sum_probs=41.1
Q ss_pred CCHHHHHHHHHHHhcCcchhhhcCCCCCchhHHhhhC-hHHHHHHHHHHhc-CCChhHHHHHHhhh-----hhhhhHHHH
Q psy6071 93 LTLQQQQHLLAELQHDSKLVYHIGLTPAKLPDLVENN-PLIAIEVLLKLIQ-SNHITEYFSVLVNM-----EMSLHSMEV 165 (185)
Q Consensus 93 L~~~qqq~ll~~L~~Dpklv~~~gltp~kLP~LVEnN-P~IAievLlkL~~-s~~i~eY~~~Lv~m-----d~SLhSmEV 165 (185)
||+.|.+.|.+-.. .|+.| ..+..+++.+++. .|+...||..+-++ ++.-|..-|
T Consensus 3 lt~~~~~~V~~sw~------------------~v~~~~~~~g~~~~~rlF~~~P~~k~~F~~f~~~~~~~~~~~~h~~~v 64 (143)
T 1out_A 3 LTAKDKSVVKAFWG------------------KISGKADVVGAEALGRMLTAYPQTKTYFSHWADLSPGSGPVKKHGGII 64 (143)
T ss_dssp CCHHHHHHHHHHHH------------------HHGGGHHHHHHHHHHHHHHHSGGGGGGGTTSSCCSTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH------------------HHHcCHHHHHHHHHHHHHHHCccHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 67777766665544 22233 6788888888887 57888888876444 333566767
Q ss_pred HHHHHHhc
Q psy6071 166 VNSVLVNM 173 (185)
Q Consensus 166 VNrLtt~v 173 (185)
++.|...+
T Consensus 65 ~~al~~~v 72 (143)
T 1out_A 65 MGAIGKAV 72 (143)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77665544
Done!