RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy6071
         (185 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 31.4 bits (70), Expect = 0.16
 Identities = 30/169 (17%), Positives = 54/169 (31%), Gaps = 37/169 (21%)

Query: 24  GPGQLNHSSPLVNQYYKPEFLRLVPPLHLIWLNLVDPSEHKIAYDSTMCVSNSAGVEAKK 83
           G G+    + +         ++      + WLNL              C  NS     + 
Sbjct: 160 GSGK----TWVALDVCLSYKVQCKMDFKIFWLNL------------KNC--NSPETVLEM 201

Query: 84  LMTRAFKSALTLQQQQHLLAELQHDSKLVYHIGLTPAKLPDLVENNPLIAIEVLLKL--I 141
           L        L  Q   +  +   H S +   I    A+L  L+++ P      LL L  +
Sbjct: 202 LQK------LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY--ENCLLVLLNV 253

Query: 142 QSNHITEYFS----VLV-----NMEMSLHSMEVVNSVLVNMEMSLHSME 181
           Q+      F+    +L+      +   L +    +  L +  M+L   E
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302



 Score = 30.6 bits (68), Expect = 0.31
 Identities = 25/207 (12%), Positives = 69/207 (33%), Gaps = 59/207 (28%)

Query: 15  AEELLTKTSG------PGQLNHSSPLV--------------NQYYK-PEFLRLVPPLHLI 53
            + LL K         P ++  ++P                   +K     +L     +I
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL---TTII 359

Query: 54  --WLNLVDPSEHKIAYDS-------------TMCV--SNSAGVEAKKLMTRAFKSALTLQ 96
              LN+++P+E++  +D               + +   +    +   ++ +  K +L  +
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419

Query: 97  QQQ---------HLLAELQHDSKLVYHIGLTPA-KLPDLVENNPLIAIEVLLKLIQSNHI 146
           Q +         +L  +++ +++   H  +     +P   +++       L+      + 
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD------LIPPYLDQYF 473

Query: 147 TEYFSV-LVNMEMSLHSMEVVNSVLVN 172
             +    L N+E     M +   V ++
Sbjct: 474 YSHIGHHLKNIEHP-ERMTLFRMVFLD 499



 Score = 28.7 bits (63), Expect = 1.3
 Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 13/109 (11%)

Query: 7   NEQTAYKVAEELLTKTSGPGQLNHSSPLVNQYYKPEFLRLVPPLHLIWLNLVDPSEHKIA 66
                 ++   LL+K     Q       V +  +  +  L+ P+         PS     
Sbjct: 60  AVSGTLRLFWTLLSK-----QEEMVQKFVEEVLRINYKFLMSPIKT---EQRQPSMMTRM 111

Query: 67  YDSTM-CVSNSAGVEAKKLMTRAFKSALTLQQQQHLLAELQHDSKLVYH 114
           Y      + N   V AK  ++R  +  L L+Q    L EL+    ++  
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRL-QPYLKLRQ---ALLELRPAKNVLID 156


>1g2r_A Hypothetical cytosolic protein; NUSA-INFB operon, structural
           genomics, PSI, protein structure initiative; 1.35A
           {Streptococcus pneumoniae} SCOP: d.192.1.1
          Length = 100

 Score = 28.2 bits (63), Expect = 0.71
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 10/73 (13%)

Query: 40  KPEFLRLVPPLHLIWLNLVDPSEHKI---AYDSTMCVSNSAGVEA--KKLMTRAFKSALT 94
           K + LR+V          +DP+       AY   + + N+  +EA  KK+  R+F   + 
Sbjct: 23  KRDLLRIVKNKEGQVF--IDPTGKANGRGAY---IKLDNAEALEAKKKKVFNRSFSMEVE 77

Query: 95  LQQQQHLLAELQH 107
                 L+A + H
Sbjct: 78  ESFYDELIAYVDH 90


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.9 bits (59), Expect = 4.4
 Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 9/56 (16%)

Query: 108  DSKLVYHIGLTPAKLPDLVENNPLIAIEVLLKLIQSNHITEYFSVLVNMEMSLHSM 163
            D+      G +   + D+V NNP + + +     +   I E +       M   ++
Sbjct: 1650 DNHFKDTYGFS---ILDIVINNP-VNLTIHFGGEKGKRIRENY-----SAMIFETI 1696


>2abs_A Adenosine kinase, AK; ribokinase fold, alpha/beta, intermediate
           conformation, signaling protein,transferase; HET: ACP;
           1.10A {Toxoplasma gondii} SCOP: c.72.1.1 PDB: 2a9z_A*
           2aa0_A* 2ab8_A* 2a9y_A* 1dgm_A* 1lio_A 1lii_A* 1lij_A*
           1lik_A*
          Length = 383

 Score = 25.9 bits (57), Expect = 8.5
 Identities = 10/40 (25%), Positives = 16/40 (40%)

Query: 9   QTAYKVAEELLTKTSGPGQLNHSSPLVNQYYKPEFLRLVP 48
           + A +VA       +    LN S+P   + YK     L+ 
Sbjct: 196 KNALEVAGYAHGIPNAIFTLNLSAPFCVELYKDAMQSLLL 235


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.316    0.129    0.362 

Gapped
Lambda     K      H
   0.267   0.0592    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,596,714
Number of extensions: 139604
Number of successful extensions: 328
Number of sequences better than 10.0: 1
Number of HSP's gapped: 327
Number of HSP's successfully gapped: 13
Length of query: 185
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 97
Effective length of database: 4,244,745
Effective search space: 411740265
Effective search space used: 411740265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.9 bits)