RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6071
         (185 letters)



>d1g2ra_ d.192.1.1 (A:) Hypothetical cytosolic protein SP0554
           {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 94

 Score = 27.4 bits (61), Expect = 0.42
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 14/75 (18%)

Query: 40  KPEFLRLV--PPLHLIWLNLVDPSEHKI---AYDSTMCVSNSAGVEA--KKLMTRAFKSA 92
           K + LR+V      +     +DP+       AY   + + N+  +EA  KK+  R+F   
Sbjct: 17  KRDLLRIVKNKEGQVF----IDPTGKANGRGAY---IKLDNAEALEAKKKKVFNRSFSME 69

Query: 93  LTLQQQQHLLAELQH 107
           +       L+A + H
Sbjct: 70  VEESFYDELIAYVDH 84


>d1r55a_ d.92.1.9 (A:) ADAM33 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 203

 Score = 25.9 bits (56), Expect = 3.0
 Identities = 10/46 (21%), Positives = 17/46 (36%)

Query: 65  IAYDSTMCVSNSAGVEAKKLMTRAFKSALTLQQQQHLLAELQHDSK 110
           +A    MC + S+G  +         +A T+  +      L HD  
Sbjct: 106 LAPVEGMCRAESSGGVSTDHSELPIGAAATMAHEIGHSLGLSHDPD 151


>d1y5ia1 b.52.2.2 (A:1075-1244) Respiratory nitrate reductase 1
          alpha chain {Escherichia coli [TaxId: 562]}
          Length = 170

 Score = 24.9 bits (54), Expect = 5.3
 Identities = 11/38 (28%), Positives = 17/38 (44%)

Query: 41 PEFLRLVPPLHLIWLNLVDPSEHKIAYDSTMCVSNSAG 78
             L L     ++WL+  D  +  IA +  + V NS G
Sbjct: 31 LLMLTLGRGGPVVWLSEADAKDLGIADNDWIEVFNSNG 68


>d1v82a_ c.68.1.7 (A:) Beta-1,3-glucuronyltransferase 1,  GlcAT-P
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 252

 Score = 25.1 bits (55), Expect = 5.6
 Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 3/21 (14%)

Query: 44 LRLVPPLHLIWLNLVDPSEHK 64
          L  VP LH  WL +V+ +  +
Sbjct: 27 LLHVPNLH--WL-VVEDAPRR 44


>d1n26a2 b.1.2.1 (A:94-195) Interleukin-6 receptor alpha chain,
          domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 102

 Score = 24.1 bits (52), Expect = 6.9
 Identities = 10/33 (30%), Positives = 14/33 (42%)

Query: 54 WLNLVDPSEHKIAYDSTMCVSNSAGVEAKKLMT 86
             L  P      Y  +MCV++S G +  K  T
Sbjct: 63 SCQLAVPEGDSSFYIVSMCVASSVGSKFSKTQT 95


>d3cu0a1 c.68.1.7 (A:75-335) 1,3-Glucuronyltransferase I (glcAT-I)
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 261

 Score = 24.8 bits (54), Expect = 7.4
 Identities = 9/21 (42%), Positives = 12/21 (57%), Gaps = 3/21 (14%)

Query: 44 LRLVPPLHLIWLNLVDPSEHK 64
          L LVP LH +   LV+ +E  
Sbjct: 26 LSLVPRLHWL---LVEDAEGP 43


>d1zara1 a.4.5.56 (A:2-90) Rio2 serine protein kinase N-terminal
           domain {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 89

 Score = 23.5 bits (51), Expect = 8.4
 Identities = 5/36 (13%), Positives = 14/36 (38%)

Query: 150 FSVLVNMEMSLHSMEVVNSVLVNMEMSLHSMEVVNR 185
           + ++  +  +L   E V   L++    +   +  N 
Sbjct: 14  WRIMDAIFKNLWDYEYVPLQLISSHARIGEEKARNI 49


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.129    0.362 

Gapped
Lambda     K      H
   0.267   0.0625    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 610,843
Number of extensions: 24641
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 12
Length of query: 185
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 105
Effective length of database: 1,309,196
Effective search space: 137465580
Effective search space used: 137465580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.3 bits)