Query psy6072
Match_columns 107
No_of_seqs 126 out of 1304
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 16:56:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6072.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6072hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00906 2A0303 cationic amin 99.3 2.5E-12 5.5E-17 108.5 6.7 77 4-106 3-80 (557)
2 PRK15049 L-asparagine permease 99.2 4.5E-11 9.9E-16 99.3 6.4 59 47-106 21-79 (499)
3 PRK10249 phenylalanine transpo 99.1 7.5E-11 1.6E-15 96.6 5.5 57 49-106 16-72 (458)
4 PRK10836 lysine transporter; P 99.0 3.5E-10 7.5E-15 93.2 5.7 58 48-106 9-67 (489)
5 PRK11387 S-methylmethionine tr 99.0 7.3E-10 1.6E-14 90.8 5.4 59 47-106 7-66 (471)
6 PRK10746 putative transport pr 99.0 7.6E-10 1.6E-14 91.0 5.0 58 48-106 4-61 (461)
7 PRK10238 aromatic amino acid t 98.9 9.9E-10 2.1E-14 90.0 5.2 57 49-106 7-63 (456)
8 PRK11049 D-alanine/D-serine/gl 98.9 7.4E-10 1.6E-14 90.9 4.4 57 49-106 15-71 (469)
9 PRK10580 proY putative proline 98.9 1.2E-09 2.7E-14 89.1 4.9 58 48-106 3-60 (457)
10 KOG1286|consensus 98.9 5.4E-10 1.2E-14 95.4 2.4 59 48-106 24-82 (554)
11 COG1113 AnsP Gamma-aminobutyra 98.9 1.6E-09 3.4E-14 90.9 3.3 56 48-104 7-62 (462)
12 TIGR01773 GABAperm gamma-amino 98.8 3.2E-09 6.9E-14 86.3 4.8 57 49-106 7-63 (452)
13 COG0833 LysP Amino acid transp 98.8 5.8E-09 1.3E-13 89.0 3.6 53 51-104 41-94 (541)
14 PRK10435 cadB lysine/cadaverin 98.7 2.2E-08 4.8E-13 81.4 4.5 54 51-106 2-55 (435)
15 TIGR00913 2A0310 amino acid pe 98.6 4.3E-08 9.2E-13 80.1 4.9 53 53-106 1-54 (478)
16 PRK10655 potE putrescine trans 98.6 5E-08 1.1E-12 78.9 4.7 53 52-106 4-56 (438)
17 PRK10644 arginine:agmatin anti 98.6 5.3E-08 1.1E-12 79.1 4.7 56 49-106 3-58 (445)
18 PRK11021 putative transporter; 98.6 6.1E-08 1.3E-12 77.9 4.4 50 56-106 1-50 (410)
19 PRK11357 frlA putative fructos 98.6 7.8E-08 1.7E-12 78.0 4.9 57 49-106 3-61 (445)
20 TIGR00911 2A0308 L-type amino 98.5 1.2E-07 2.7E-12 78.2 5.6 57 49-106 37-95 (501)
21 TIGR03810 arg_ornith_anti argi 98.5 1.6E-07 3.4E-12 77.1 4.7 52 54-106 1-53 (468)
22 TIGR00905 2A0302 transporter, 98.5 1.9E-07 4.1E-12 76.7 4.7 54 52-106 5-59 (473)
23 KOG1287|consensus 98.3 2.2E-07 4.8E-12 78.6 2.5 58 48-106 6-65 (479)
24 TIGR00909 2A0306 amino acid tr 98.3 1.2E-06 2.5E-11 70.4 4.8 54 52-106 1-54 (429)
25 PRK10197 gamma-aminobutyrate t 98.2 1.4E-06 3E-11 71.3 3.3 43 63-106 1-43 (446)
26 TIGR03428 ureacarb_perm permea 98.2 2.2E-06 4.8E-11 70.5 4.3 58 48-106 7-65 (475)
27 TIGR00908 2A0305 ethanolamine 97.9 1.5E-05 3.3E-10 64.5 4.1 56 49-106 2-58 (442)
28 TIGR00907 2A0304 amino acid pe 97.8 2.5E-05 5.4E-10 64.1 4.2 58 48-106 6-65 (482)
29 TIGR00930 2a30 K-Cl cotranspor 97.5 8.1E-05 1.7E-09 67.3 3.9 55 51-106 73-129 (953)
30 TIGR00912 2A0309 spore germina 97.5 6E-05 1.3E-09 59.4 2.3 51 55-106 2-52 (359)
31 COG0531 PotE Amino acid transp 97.0 0.001 2.2E-08 53.1 4.7 57 48-106 6-63 (466)
32 PF13520 AA_permease_2: Amino 96.8 0.0012 2.6E-08 52.7 3.3 48 56-106 1-49 (426)
33 PF00324 AA_permease: Amino ac 96.5 0.00068 1.5E-08 55.6 0.4 46 60-106 1-47 (478)
34 TIGR00837 araaP aromatic amino 96.2 0.0023 4.9E-08 50.9 1.6 44 62-106 3-46 (381)
35 PRK15238 inner membrane transp 95.8 0.011 2.3E-07 49.1 3.8 51 52-106 5-56 (496)
36 KOG1289|consensus 94.9 0.015 3.2E-07 50.4 1.9 59 47-106 41-101 (550)
37 PHA02764 hypothetical protein; 93.0 0.19 4.1E-06 41.8 4.8 59 48-106 6-64 (399)
38 PRK10483 tryptophan permease; 92.4 0.21 4.5E-06 41.8 4.4 54 51-106 6-60 (414)
39 PF03222 Trp_Tyr_perm: Tryptop 92.3 0.21 4.5E-06 41.0 4.3 49 55-105 2-51 (394)
40 PRK09664 tryptophan permease T 91.8 0.25 5.4E-06 41.4 4.1 48 57-106 10-58 (415)
41 PF03845 Spore_permease: Spore 90.4 0.28 6.1E-06 38.3 3.1 49 55-105 1-49 (320)
42 COG0814 SdaC Amino acid permea 89.9 0.5 1.1E-05 39.0 4.3 53 51-105 4-57 (415)
43 PF01235 Na_Ala_symp: Sodium:a 89.3 0.85 1.8E-05 38.4 5.2 46 53-99 16-62 (416)
44 PRK15132 tyrosine transporter 86.7 0.95 2.1E-05 37.6 4.0 30 57-88 4-33 (403)
45 TIGR00814 stp serine transport 86.0 0.56 1.2E-05 38.7 2.2 39 60-103 7-45 (397)
46 COG1115 AlsT Na+/alanine sympo 86.0 2.6 5.5E-05 36.1 6.2 47 51-98 58-105 (452)
47 TIGR00835 agcS amino acid carr 79.5 2 4.3E-05 36.2 3.1 40 54-95 45-86 (425)
48 TIGR03813 put_Glu_GABA_T putat 78.1 2.6 5.6E-05 34.7 3.4 47 54-105 1-48 (474)
49 PF01490 Aa_trans: Transmembra 75.8 3.8 8.3E-05 32.2 3.6 47 55-103 2-49 (409)
50 PRK13629 threonine/serine tran 74.4 4.4 9.4E-05 34.5 3.8 42 61-104 24-66 (443)
51 KOG1303|consensus 73.5 9.1 0.0002 32.3 5.5 50 52-103 34-84 (437)
52 TIGR00796 livcs branched-chain 69.3 6 0.00013 32.7 3.5 41 65-106 4-47 (378)
53 PF12666 PrgI: PrgI family pro 66.6 11 0.00024 24.4 3.8 34 49-82 10-43 (93)
54 TIGR00910 2A0307_GadC glutamat 65.2 9.2 0.0002 32.2 3.9 43 53-100 3-45 (507)
55 KOG1304|consensus 53.8 47 0.001 28.5 6.2 47 53-101 44-92 (449)
56 PTZ00206 amino acid transporte 50.9 58 0.0013 27.2 6.3 43 57-101 61-104 (467)
57 PF11712 Vma12: Endoplasmic re 50.8 25 0.00055 24.8 3.6 31 48-78 71-101 (142)
58 PLN03074 auxin influx permease 49.5 47 0.001 28.0 5.5 43 57-101 47-90 (473)
59 COG5336 Uncharacterized protei 43.4 24 0.00052 25.0 2.4 49 52-102 39-88 (116)
60 PF12597 DUF3767: Protein of u 38.1 24 0.00051 24.8 1.8 43 59-103 41-85 (118)
61 PF11023 DUF2614: Protein of u 34.6 64 0.0014 22.8 3.5 23 59-82 16-38 (114)
62 KOG1305|consensus 26.4 1.4E+02 0.003 25.1 4.7 34 53-88 3-36 (411)
63 PRK11375 allantoin permease; P 25.5 2.9E+02 0.0064 23.3 6.6 32 51-82 22-53 (484)
64 PF05915 DUF872: Eukaryotic pr 24.0 1.5E+02 0.0031 20.7 3.8 46 58-103 40-88 (115)
65 PF09336 Vps4_C: Vps4 C termin 22.6 37 0.0008 21.0 0.5 24 4-27 32-55 (62)
66 TIGR02106 cyd_oper_ybgT cyd op 22.5 79 0.0017 17.3 1.7 13 92-104 4-16 (30)
No 1
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.33 E-value=2.5e-12 Score=108.49 Aligned_cols=77 Identities=38% Similarity=0.705 Sum_probs=65.0
Q ss_pred HHHHHHHhhccccCCCCCchhhhccCCCCCCCCCCCCCCCcC-CCCccccccccChhhHHHhhhcceecchhhHhhHHHH
Q psy6072 4 LRNLYEALSRKKIDVGDDDVSIAEGKNPAGGADGAGKLPLES-ASDAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVA 82 (107)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~ 82 (107)
.+.+.+++.|||+ ++. +..+++|+|++++++++++++|++||+|||+++|.++
T Consensus 3 ~~~~~~~~~r~k~--------------------------~~~~~~~~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a 56 (557)
T TIGR00906 3 VLTFARCLIRRKI--------------------------VDLDSREESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVA 56 (557)
T ss_pred hHHHHHHHhccCC--------------------------cccccccccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHH
Confidence 4567888999988 211 1234569999999999999999999999999999887
Q ss_pred HhhhChHHHHHHHHHHHHHHHHhc
Q psy6072 83 RNQAGPSVVISFAIAAVTSLFSVQ 106 (107)
Q Consensus 83 ~~~aGp~~lla~liagl~~ll~Al 106 (107)
.+.+||+++++|+++|+.+++.|+
T Consensus 57 ~~~aGp~~~ls~liagv~~l~~al 80 (557)
T TIGR00906 57 RNDSGPAIVLSFLISGLAAVLSGF 80 (557)
T ss_pred HhccCcHHHHHHHHHHHHHHHHHH
Confidence 557999999999999999998875
No 2
>PRK15049 L-asparagine permease; Provisional
Probab=99.17 E-value=4.5e-11 Score=99.31 Aligned_cols=59 Identities=22% Similarity=0.553 Sum_probs=53.3
Q ss_pred CCccccccccChhhHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHHHhc
Q psy6072 47 SDAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQ 106 (107)
Q Consensus 47 ~~~~~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll~Al 106 (107)
+.++++||+|+.++++++++|++||+|+|+++|.+++ .+||+.+++|+++++++++.++
T Consensus 21 ~~~~~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~-~aGp~~il~~li~~i~~~~v~~ 79 (499)
T PRK15049 21 AHEEGYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQ-MAGPALALVYLICGLFSFFILR 79 (499)
T ss_pred CCchhhhccCCHhHhHHHhhhccccchHHHhhHHHHH-hcCCHHHHHHHHHHHHHHHHHH
Confidence 3455699999999999999999999999999999984 8999889999999999988764
No 3
>PRK10249 phenylalanine transporter; Provisional
Probab=99.12 E-value=7.5e-11 Score=96.61 Aligned_cols=57 Identities=23% Similarity=0.594 Sum_probs=52.5
Q ss_pred ccccccccChhhHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHHHhc
Q psy6072 49 APQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQ 106 (107)
Q Consensus 49 ~~~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll~Al 106 (107)
+++++|+|+.++++++++|++||+|+|+++|.+++ .+||+++++|+++++++++.++
T Consensus 16 ~~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~-~aGp~~~l~~li~~~~~~~~~~ 72 (458)
T PRK10249 16 EPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQ-MAGPAVLLGYGVAGIIAFLIMR 72 (458)
T ss_pred chhhhccCcHhHhhhhhhhcccchhHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHHHH
Confidence 34799999999999999999999999999999985 7999999999999999988764
No 4
>PRK10836 lysine transporter; Provisional
Probab=99.03 E-value=3.5e-10 Score=93.24 Aligned_cols=58 Identities=33% Similarity=0.672 Sum_probs=53.1
Q ss_pred CccccccccChhhHHHhhhcceecchhhHhhHHHHHhhhCh-HHHHHHHHHHHHHHHHhc
Q psy6072 48 DAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVQ 106 (107)
Q Consensus 48 ~~~~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp-~~lla~liagl~~ll~Al 106 (107)
+++++||+|+.++++++++|++||+|||++||.+++ .+|| +++++|+++|+++++.++
T Consensus 9 ~~~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~-~aGp~~~l~a~~i~g~~~~~~al 67 (489)
T PRK10836 9 EAPGLRRELKARHLTMIAIGGSIGTGLFVASGATIS-QAGPGGALLSYMLIGLMVYFLMT 67 (489)
T ss_pred CcccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHH-hcCCHHHHHHHHHHHHHHHHHHH
Confidence 456799999999999999999999999999999985 7999 589999999999998875
No 5
>PRK11387 S-methylmethionine transporter; Provisional
Probab=98.97 E-value=7.3e-10 Score=90.82 Aligned_cols=59 Identities=24% Similarity=0.522 Sum_probs=53.1
Q ss_pred CCccccccccChhhHHHhhhcceecchhhHhhHHHHHhhhCh-HHHHHHHHHHHHHHHHhc
Q psy6072 47 SDAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVQ 106 (107)
Q Consensus 47 ~~~~~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp-~~lla~liagl~~ll~Al 106 (107)
+++.+|||+|+.++++++++|++||+|+|+++|.+++ .+|| +++++|+++++++++.++
T Consensus 7 ~~~~~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~-~~G~~~~~l~~~i~~~~~~~~~~ 66 (471)
T PRK11387 7 QQAGQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIIS-TTGAAGTLLAYLIGALVVYLVMQ 66 (471)
T ss_pred CcchhhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHH
Confidence 3455799999999999999999999999999999885 7998 799999999999998764
No 6
>PRK10746 putative transport protein YifK; Provisional
Probab=98.96 E-value=7.6e-10 Score=91.02 Aligned_cols=58 Identities=33% Similarity=0.646 Sum_probs=52.5
Q ss_pred CccccccccChhhHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHHHhc
Q psy6072 48 DAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQ 106 (107)
Q Consensus 48 ~~~~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll~Al 106 (107)
.++++||+|+.+|++++++|++||+|+|++++..++ .+||+++++|+++|+++++.++
T Consensus 4 ~~~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~-~aGp~~~l~~~i~g~~~~~v~~ 61 (461)
T PRK10746 4 NKPELQRGLEARHIELIALGGTIGVGLFMGAASTLK-WAGPSVLLAYIIAGLFVFFIMR 61 (461)
T ss_pred CchHHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHH-hcChHHHHHHHHHHHHHHHHHH
Confidence 356799999999999999999999999999999984 7999999999999999887653
No 7
>PRK10238 aromatic amino acid transporter; Provisional
Probab=98.95 E-value=9.9e-10 Score=89.98 Aligned_cols=57 Identities=26% Similarity=0.582 Sum_probs=52.5
Q ss_pred ccccccccChhhHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHHHhc
Q psy6072 49 APQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQ 106 (107)
Q Consensus 49 ~~~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll~Al 106 (107)
.+++||+|+.++++++++|++||+|+|+++|.+++ .+||+++++|+++++++++.++
T Consensus 7 ~~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~-~~Gp~~i~~~~i~gi~~~~v~~ 63 (456)
T PRK10238 7 GEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQ-SAGPGIILGYAIAGFIAFLIMR 63 (456)
T ss_pred chhhhccCcHHHHHHHHhhccccchHHHhhHHHHH-hcCcHHHHHHHHHHHHHHHHHH
Confidence 45699999999999999999999999999999985 7999999999999999988764
No 8
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=98.94 E-value=7.4e-10 Score=90.86 Aligned_cols=57 Identities=23% Similarity=0.532 Sum_probs=51.6
Q ss_pred ccccccccChhhHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHHHhc
Q psy6072 49 APQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQ 106 (107)
Q Consensus 49 ~~~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll~Al 106 (107)
++++||+|++++++++++|++||+|+|+++|..++ .+||+.+++|+++++++++.++
T Consensus 15 ~~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~-~aGp~~i~~~~i~~i~~~~~~~ 71 (469)
T PRK11049 15 EQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTIS-LAGPSIIFVYMIIGFMLFFVMR 71 (469)
T ss_pred chhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHh-hcCcHHHHHHHHHHHHHHHHHH
Confidence 35699999999999999999999999999999984 7999889999999998877664
No 9
>PRK10580 proY putative proline-specific permease; Provisional
Probab=98.92 E-value=1.2e-09 Score=89.06 Aligned_cols=58 Identities=22% Similarity=0.517 Sum_probs=52.9
Q ss_pred CccccccccChhhHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHHHhc
Q psy6072 48 DAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQ 106 (107)
Q Consensus 48 ~~~~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll~Al 106 (107)
+++++||+|+.++++++++|++||+|+|+++|..++ .+||+++++|+++++++++.++
T Consensus 3 ~~~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~-~aG~~~~l~~~i~~i~~~~~a~ 60 (457)
T PRK10580 3 SKNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIK-MAGPSVLLAYIIGGVAAYIIMR 60 (457)
T ss_pred CCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HhChHHHHHHHHHHHHHHHHHH
Confidence 356799999999999999999999999999999874 7999999999999999988764
No 10
>KOG1286|consensus
Probab=98.91 E-value=5.4e-10 Score=95.37 Aligned_cols=59 Identities=41% Similarity=0.658 Sum_probs=52.7
Q ss_pred CccccccccChhhHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHHHhc
Q psy6072 48 DAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQ 106 (107)
Q Consensus 48 ~~~~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll~Al 106 (107)
.++++||+|+.+|++++++|++||+|+|+++|.++.+.+||+++++|+++|+.+++.++
T Consensus 24 ~~~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~ 82 (554)
T KOG1286|consen 24 GETELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSAL 82 (554)
T ss_pred ccchhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999765556999999999999888764
No 11
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=98.85 E-value=1.6e-09 Score=90.93 Aligned_cols=56 Identities=27% Similarity=0.555 Sum_probs=51.5
Q ss_pred CccccccccChhhHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHHH
Q psy6072 48 DAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFS 104 (107)
Q Consensus 48 ~~~~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll~ 104 (107)
++++|+|.|+.+|+.++++|+.||+|+|.++|...+ .|||+++++|+++|+++++.
T Consensus 7 ~~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~-~AGPSvlLaY~I~G~~~f~i 62 (462)
T COG1113 7 EEQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIA-MAGPSVLLAYLIAGIFVFLI 62 (462)
T ss_pred cchhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhh-hhCcHHHHHHHHHHHHHHHH
Confidence 456799999999999999999999999999999985 89999999999999988764
No 12
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=98.85 E-value=3.2e-09 Score=86.27 Aligned_cols=57 Identities=26% Similarity=0.536 Sum_probs=52.3
Q ss_pred ccccccccChhhHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHHHhc
Q psy6072 49 APQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQ 106 (107)
Q Consensus 49 ~~~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll~Al 106 (107)
..++||+|+.++++++++|++||+|+|++||..++ .+||..+++|+++++++++.++
T Consensus 7 ~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~-~~G~~~~i~~~i~~v~~~~~a~ 63 (452)
T TIGR01773 7 GLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIA-SAGPAALLAYLLAGLLVVFIMR 63 (452)
T ss_pred hHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHH-hcCCHHHHHHHHHHHHHHHHHH
Confidence 45699999999999999999999999999999885 7999888999999999988765
No 13
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=98.75 E-value=5.8e-09 Score=88.99 Aligned_cols=53 Identities=32% Similarity=0.645 Sum_probs=49.5
Q ss_pred ccccccChhhHHHhhhcceecchhhHhhHHHHHhhhCh-HHHHHHHHHHHHHHHH
Q psy6072 51 QLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFS 104 (107)
Q Consensus 51 ~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp-~~lla~liagl~~ll~ 104 (107)
+|||.|..+|+.++++|++||||+|+++|..+. .+|| +++++|++.|+++++.
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~-~aGP~g~li~y~i~G~~vy~v 94 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALS-QAGPAGLLIAYLIIGIMVYFV 94 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhh-ccCcHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999985 7999 8999999999887764
No 14
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=98.67 E-value=2.2e-08 Score=81.36 Aligned_cols=54 Identities=20% Similarity=0.353 Sum_probs=48.9
Q ss_pred ccccccChhhHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHHHhc
Q psy6072 51 QLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQ 106 (107)
Q Consensus 51 ~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll~Al 106 (107)
+.+|++++++++++++|+|||+|||.+|+..+ .+||.++++|+++++.+++.++
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a--~~G~~~i~~wli~~~~~l~~al 55 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLA--SIGSIAIWGWIISIIGAMSLAY 55 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999864 4899999999999999988875
No 15
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=98.62 E-value=4.3e-08 Score=80.09 Aligned_cols=53 Identities=26% Similarity=0.508 Sum_probs=48.7
Q ss_pred ccccChhhHHHhhhcceecchhhHhhHHHHHhhhCh-HHHHHHHHHHHHHHHHhc
Q psy6072 53 ARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVQ 106 (107)
Q Consensus 53 ~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp-~~lla~liagl~~ll~Al 106 (107)
||+|+.++++++++|++||+|+|++++.+++ .+|| +++++|+++++++++.++
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~-~~Gp~~~i~~~~i~~~~~~~~a~ 54 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALA-TGGPAGLLIGYAIMGSIIYCVMQ 54 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHH-hcCCHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999985 7999 679999999999988764
No 16
>PRK10655 potE putrescine transporter; Provisional
Probab=98.60 E-value=5e-08 Score=78.89 Aligned_cols=53 Identities=28% Similarity=0.454 Sum_probs=48.0
Q ss_pred cccccChhhHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHHHhc
Q psy6072 52 LARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQ 106 (107)
Q Consensus 52 L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll~Al 106 (107)
.+|+|++++++++++|++||+|||.+|+... .+||..+++|+++++++++.++
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~--~~G~~~~~~w~i~~~~~~~~a~ 56 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLA--QVGTISILSWLVTAVGSMALAY 56 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHH--HhhHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999998764 4799889999999999998775
No 17
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=98.60 E-value=5.3e-08 Score=79.15 Aligned_cols=56 Identities=21% Similarity=0.415 Sum_probs=49.3
Q ss_pred ccccccccChhhHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHHHhc
Q psy6072 49 APQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQ 106 (107)
Q Consensus 49 ~~~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll~Al 106 (107)
+.+++|++++++++++++|++||+|||++|+.+++ .||..+++|+++++.+++.++
T Consensus 3 ~~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~--~g~~~~~~~~i~~~~~l~~al 58 (445)
T PRK10644 3 SDADAHKVGLIPVTLMVAGNIMGSGVFLLPANLAS--TGGIAIYGWLVTIIGALGLSM 58 (445)
T ss_pred CCccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999998753 577788999999999988775
No 18
>PRK11021 putative transporter; Provisional
Probab=98.57 E-value=6.1e-08 Score=77.87 Aligned_cols=50 Identities=22% Similarity=0.228 Sum_probs=46.1
Q ss_pred cChhhHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHHHhc
Q psy6072 56 LGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQ 106 (107)
Q Consensus 56 L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll~Al 106 (107)
+++|+.+++.+|+|||+|||++||.+++ .+||+++++|+++++++++.++
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~-~aG~~~~~~~~i~~~~~~~~al 50 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAAL-VAGNNSLWAWPLLILLIFPIAI 50 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHH-hcCchHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999874 7999999999999999988775
No 19
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=98.56 E-value=7.8e-08 Score=78.03 Aligned_cols=57 Identities=32% Similarity=0.580 Sum_probs=50.0
Q ss_pred ccccccccChhhHHHhhhcceecchhhHhhHHHHHhhhCh--HHHHHHHHHHHHHHHHhc
Q psy6072 49 APQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGP--SVVISFAIAAVTSLFSVQ 106 (107)
Q Consensus 49 ~~~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp--~~lla~liagl~~ll~Al 106 (107)
+++|+|++++++++++++|.+||+|+|..++.++. .+|+ ..+++|+++++++++.++
T Consensus 3 ~~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~-~~G~~~~~~l~~li~~v~~l~~al 61 (445)
T PRK11357 3 SQELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAK-AAGTPWLTVLAFVIGGLIVIPQMC 61 (445)
T ss_pred cccccccccHHHHHHHHHHhheechhccchHHHHH-HcCCcHHHHHHHHHHHHHHHHHHH
Confidence 45699999999999999999999999999998875 4564 488999999999988775
No 20
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=98.55 E-value=1.2e-07 Score=78.18 Aligned_cols=57 Identities=25% Similarity=0.423 Sum_probs=50.2
Q ss_pred ccccccccChhhHHHhhhcceecchhhHhhHHHHHhhhCh-H-HHHHHHHHHHHHHHHhc
Q psy6072 49 APQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGP-S-VVISFAIAAVTSLFSVQ 106 (107)
Q Consensus 49 ~~~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp-~-~lla~liagl~~ll~Al 106 (107)
+++++|++++++++++++|++||+|+|.+++.+++ .+|| + .+++|+++++++++.++
T Consensus 37 ~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~-~~G~~g~~~~~~ii~~i~~~~~al 95 (501)
T TIGR00911 37 AVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLK-NAGSVGLALIMWAVCGIFSIVGAL 95 (501)
T ss_pred ccccCccccHhHhhHhheeceEEeeEeecHHHHHh-hCCChHHHHHHHHHHHHHHHHHHH
Confidence 45699999999999999999999999999999885 6887 3 56899999998888775
No 21
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=98.48 E-value=1.6e-07 Score=77.07 Aligned_cols=52 Identities=35% Similarity=0.510 Sum_probs=47.3
Q ss_pred cccChhhHHHhhhcceecchhhHhhHHHHHhhhCh-HHHHHHHHHHHHHHHHhc
Q psy6072 54 RVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVQ 106 (107)
Q Consensus 54 r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp-~~lla~liagl~~ll~Al 106 (107)
|++++++++++++|++||+|||.+|+.+++ .+|| +.+++|+++++.+++.++
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~-~ag~~~~l~~w~i~~~~~~~~al 53 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAA-GAAAGAVLIGWVITGVGMLALAF 53 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHH-hhchHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999999999999874 7899 588999999999988775
No 22
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=98.46 E-value=1.9e-07 Score=76.65 Aligned_cols=54 Identities=35% Similarity=0.591 Sum_probs=48.7
Q ss_pred cccccChhhHHHhhhcceecchhhHhhHHHHHhhhCh-HHHHHHHHHHHHHHHHhc
Q psy6072 52 LARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVQ 106 (107)
Q Consensus 52 L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp-~~lla~liagl~~ll~Al 106 (107)
.+|++++++++++++|++||+|+|..|+.++ +.+|| ..+++|+++++++++.++
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~-~~~g~~~~~~~wli~~~~~~~~al 59 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLA-SVAGPGAVIIGWIITGVGMLALAF 59 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHH-HhcchHHHHHHHHHHHHHHHHHHH
Confidence 4889999999999999999999999999887 47888 578999999999888765
No 23
>KOG1287|consensus
Probab=98.35 E-value=2.2e-07 Score=78.55 Aligned_cols=58 Identities=24% Similarity=0.430 Sum_probs=53.0
Q ss_pred CccccccccChhhHHHhhhcceecchhhHhhHHHHHhhhCh--HHHHHHHHHHHHHHHHhc
Q psy6072 48 DAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGP--SVVISFAIAAVTSLFSVQ 106 (107)
Q Consensus 48 ~~~~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp--~~lla~liagl~~ll~Al 106 (107)
++.+++|+++++..+.+.+|.+||+|||++|..+.+ .+|| .+++-|+++|++++..|+
T Consensus 6 ~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~-~~gsvg~sL~iWv~~gi~s~~gal 65 (479)
T KOG1287|consen 6 EEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLA-NTGSVGLSLIIWVFCGIISIIGAL 65 (479)
T ss_pred ccccccceeeeecceeEEEEeeEecccccCcHHHHH-cCCchhHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999985 7888 688889999999999886
No 24
>TIGR00909 2A0306 amino acid transporter.
Probab=98.27 E-value=1.2e-06 Score=70.39 Aligned_cols=54 Identities=52% Similarity=0.944 Sum_probs=49.1
Q ss_pred cccccChhhHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHHHhc
Q psy6072 52 LARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQ 106 (107)
Q Consensus 52 L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll~Al 106 (107)
|+|+++.++.+++.++.+||+|+|.+++.+.. .+||..+++|+++++.+++.++
T Consensus 1 l~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~-~~G~~~~l~~li~~~~~~~~a~ 54 (429)
T TIGR00909 1 LSRELGLFDLTMLGIGAMIGTGIFVVTGIAAG-KAGPAVILSFVLAGLTALFIAL 54 (429)
T ss_pred CCccccHHHHHHHHHhhhhcchHHHhHHHHHH-HcCCHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999874 6899888999999999887764
No 25
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=98.17 E-value=1.4e-06 Score=71.30 Aligned_cols=43 Identities=21% Similarity=0.530 Sum_probs=38.9
Q ss_pred HhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHHHhc
Q psy6072 63 MLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQ 106 (107)
Q Consensus 63 ~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll~Al 106 (107)
++++|++||+|+|+++|..++ .+||+++++|+++|+++++.++
T Consensus 1 ~~~ig~~IGsGif~~~g~~~~-~aG~~~ll~~~i~gi~~~~~al 43 (446)
T PRK10197 1 MLSIAGVIGASLFVGSSVAIA-EAGPAVLLAYLFAGLLVVMIMR 43 (446)
T ss_pred CeeecchhHhHHHHHhHHHHH-hcChHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999885 7999999999999999998775
No 26
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=98.16 E-value=2.2e-06 Score=70.46 Aligned_cols=58 Identities=22% Similarity=0.266 Sum_probs=52.9
Q ss_pred CccccccccChhhHHHhhhcce-ecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHHHhc
Q psy6072 48 DAPQLARVLGLVDLTMLGVGAT-LGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQ 106 (107)
Q Consensus 48 ~~~~L~r~L~~~~l~~l~vG~~-IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll~Al 106 (107)
.+++|||+++.++...++++.+ +++|+|.+++..+. .+||+++++|+++++.+++.|+
T Consensus 7 ~~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~-~~Gp~~~~~~li~~i~~l~~al 65 (475)
T TIGR03428 7 YQPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYG-FGGPAFFWTWPVVFVGQLLVAL 65 (475)
T ss_pred CccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcHHHHHHHHHHHHHHHHHH
Confidence 4677999999999999999985 99999999999984 7999999999999999998875
No 27
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=97.87 E-value=1.5e-05 Score=64.53 Aligned_cols=56 Identities=25% Similarity=0.186 Sum_probs=47.2
Q ss_pred ccccccccChhhHHHhhhcceecchhhHhhHHHHHhhhCh-HHHHHHHHHHHHHHHHhc
Q psy6072 49 APQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVQ 106 (107)
Q Consensus 49 ~~~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp-~~lla~liagl~~ll~Al 106 (107)
++++||++++++.+++++|++|| |.|+..+..++ .+|| +.+++|+++++++++.++
T Consensus 2 ~~~l~r~l~~~~~~~l~~~~~ig-g~~~~~~~~~~-~~G~~~~~~~~~i~~~~~~~~a~ 58 (442)
T TIGR00908 2 HRQLKKTLATWQLWGIGVGYVIS-GDYAGWNFGLA-QGGWGGFVVATLLVATMYLTFCF 58 (442)
T ss_pred CchhhccCCHHHHHHhHHHHHhh-ccchhHhhHHH-HhCcHHHHHHHHHHHHHHHHHHH
Confidence 45699999999999999999998 88888776664 6899 688999999988777653
No 28
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=97.79 E-value=2.5e-05 Score=64.06 Aligned_cols=58 Identities=19% Similarity=0.198 Sum_probs=49.0
Q ss_pred CccccccccChhhHHHhhhcce-ecchhhHhhHHHHHhhhCh-HHHHHHHHHHHHHHHHhc
Q psy6072 48 DAPQLARVLGLVDLTMLGVGAT-LGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVQ 106 (107)
Q Consensus 48 ~~~~L~r~L~~~~l~~l~vG~~-IGaGIFv~~g~v~~~~aGp-~~lla~liagl~~ll~Al 106 (107)
.+++|||+++.++.++++++.+ +.+|+|.+.+..++ .+|| +++++|+++++++++.++
T Consensus 6 ~~~~l~r~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~Gp~~~i~~~~i~gi~~l~~~~ 65 (482)
T TIGR00907 6 YKPELKREFSLWSIFGFAFSISNSWTGISTTYNYGLS-SGGAMSIVWGWIIAGAGSICIAL 65 (482)
T ss_pred CcceeecccchhHHHHHHHHHHHHHHHHHHHHHHhhh-cCCccchhHHHHHHHHHHHHHHH
Confidence 4567999999999999999954 23899999887764 7899 789999999999998764
No 29
>TIGR00930 2a30 K-Cl cotransporter.
Probab=97.53 E-value=8.1e-05 Score=67.33 Aligned_cols=55 Identities=15% Similarity=0.106 Sum_probs=49.4
Q ss_pred ccccccChhhHHHhh-hcceecchhhHhhHHHHHhhhCh-HHHHHHHHHHHHHHHHhc
Q psy6072 51 QLARVLGLVDLTMLG-VGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVQ 106 (107)
Q Consensus 51 ~L~r~L~~~~l~~l~-vG~~IGaGIFv~~g~v~~~~aGp-~~lla~liagl~~ll~Al 106 (107)
.-++++|++..+++- ++.|+|+|+|+.++.++. .+|+ .++++|+++++++++.++
T Consensus 73 ~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg-~aG~~~sll~~~la~~vtlltaL 129 (953)
T TIGR00930 73 AGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVG-QAGIGLSLLIILLCCCVTTITGL 129 (953)
T ss_pred CCCcccceeEeeeHhhhHhHheeeeeeeHHHHHH-hhhHHHHHHHHHHHHHHHHHHHH
Confidence 347899999999999 999999999999999985 7898 588999999999999876
No 30
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=97.49 E-value=6e-05 Score=59.41 Aligned_cols=51 Identities=22% Similarity=0.312 Sum_probs=45.5
Q ss_pred ccChhhHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHHHhc
Q psy6072 55 VLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQ 106 (107)
Q Consensus 55 ~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll~Al 106 (107)
+++.++.+++.++.+||+|++..|+..+ +.+|+.++++++++++.+++.++
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~-~~a~~~~wi~~ll~~~~~~~~~~ 52 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVS-QSAGQDGWISIILGGLIIIFLLC 52 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHH-hccCCCeeHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999887 47888888999999998887664
No 31
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=97.02 E-value=0.001 Score=53.13 Aligned_cols=57 Identities=40% Similarity=0.719 Sum_probs=47.5
Q ss_pred CccccccccChhh-HHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHHHhc
Q psy6072 48 DAPQLARVLGLVD-LTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQ 106 (107)
Q Consensus 48 ~~~~L~r~L~~~~-l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll~Al 106 (107)
.+++++|+++.++ +..+.++.++|.|+|..++..+. .+ |...++|++++++.++.++
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~-~~-~~~~~~~li~~~~~~~~a~ 63 (466)
T COG0531 6 MSSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAG-LA-PAAILAWLIAGIIILFLAL 63 (466)
T ss_pred cchhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHH-hc-hHHHHHHHHHHHHHHHHHH
Confidence 4567899999999 99999999999999999998763 34 7666669999988887754
No 32
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=96.79 E-value=0.0012 Score=52.68 Aligned_cols=48 Identities=33% Similarity=0.553 Sum_probs=40.0
Q ss_pred cChhhHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHH-HHHhc
Q psy6072 56 LGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTS-LFSVQ 106 (107)
Q Consensus 56 L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~-ll~Al 106 (107)
|++++..++++|.++|+|+|..+ .+ ..+||..+++|++++++. ++.++
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~--~~-~~~G~~~~~~~~i~~~~~~l~~a~ 49 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP--AA-ASAGPSAILAWIIAALLFFLPIAL 49 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH--HH-TCTGCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH--HH-HHHhHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999988 34 468999999999999887 55543
No 33
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=96.55 E-value=0.00068 Score=55.57 Aligned_cols=46 Identities=24% Similarity=0.550 Sum_probs=40.0
Q ss_pred hHHHhhhcceecchhhHhhHHHHHhhhCh-HHHHHHHHHHHHHHHHhc
Q psy6072 60 DLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVQ 106 (107)
Q Consensus 60 ~l~~l~vG~~IGaGIFv~~g~v~~~~aGp-~~lla~liagl~~ll~Al 106 (107)
|++++++|+++|+|+|+..+.++. .+|| +.+++|+++++++++.+.
T Consensus 1 hv~~~~ig~~ig~g~f~~~g~~~~-~~G~~~~~la~li~~i~~~~~~~ 47 (478)
T PF00324_consen 1 HVFMISIGGIIGTGLFLGSGFAIA-AAGPGGAPLAYLIAGIIVLLVAL 47 (478)
T ss_pred CEEEeeHHHHHHHHHHHHHHHHHH-hcccccchhHhHHHHHHHHhhhh
Confidence 356788999999999999999885 7999 889999999999988763
No 34
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=96.23 E-value=0.0023 Score=50.86 Aligned_cols=44 Identities=20% Similarity=0.175 Sum_probs=31.3
Q ss_pred HHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHHHhc
Q psy6072 62 TMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQ 106 (107)
Q Consensus 62 ~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll~Al 106 (107)
+++++|++||+|+|.+|+..+ ..+++..++.++++++++.+.++
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a-~~g~~~~~~~~i~~~~~~~~~~l 46 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTA-GAWFIWTLLLLILLWFLMLHSGL 46 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999876 34555555555666666655543
No 35
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=95.78 E-value=0.011 Score=49.12 Aligned_cols=51 Identities=14% Similarity=0.144 Sum_probs=38.7
Q ss_pred cccccChhhHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHH-HHHhc
Q psy6072 52 LARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTS-LFSVQ 106 (107)
Q Consensus 52 L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~-ll~Al 106 (107)
++|+|+++++++++++++||.+. .|.. .+ .+||+.++.|++++++. ++.|+
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~~--~~~~-~~-~~G~~~i~~~~i~~~~~~l~~al 56 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFAN--SPRA-FY-LMGYSAIPWYILSAILFFIPFAL 56 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCCc--hHHH-HH-HcChHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999763 2332 32 58998888999888764 44543
No 36
>KOG1289|consensus
Probab=94.91 E-value=0.015 Score=50.40 Aligned_cols=59 Identities=19% Similarity=0.212 Sum_probs=42.7
Q ss_pred CCccccccccChhhHHHhhhcce-ecchhhHhhHHHHHhhhCh-HHHHHHHHHHHHHHHHhc
Q psy6072 47 SDAPQLARVLGLVDLTMLGVGAT-LGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVQ 106 (107)
Q Consensus 47 ~~~~~L~r~L~~~~l~~l~vG~~-IGaGIFv~~g~v~~~~aGp-~~lla~liagl~~ll~Al 106 (107)
.-++++||++++|....++++.+ .=.|+-.+-...+ ..+|| .++.+|+|+++..+|.|+
T Consensus 41 gYkqef~R~fs~~s~fg~sFs~~g~~~~i~tsm~~gl-~~gG~~~~vwgwlIa~~~~i~va~ 101 (550)
T KOG1289|consen 41 GYKQELKREFSLFSIFGISFSLMGLLPGIATSMAYGL-GSGGPPTLVWGWLIAGFFSICVAL 101 (550)
T ss_pred CCchhhhhhhhHHHHHHHHHHHhcchhhhhhheeecc-ccCChHHHHHHHHHHHHHHHHHHh
Confidence 36789999999999998888753 1134433322233 24666 899999999999999875
No 37
>PHA02764 hypothetical protein; Provisional
Probab=92.97 E-value=0.19 Score=41.83 Aligned_cols=59 Identities=8% Similarity=0.028 Sum_probs=41.8
Q ss_pred CccccccccChhhHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHHHhc
Q psy6072 48 DAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQ 106 (107)
Q Consensus 48 ~~~~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll~Al 106 (107)
+.++|-|+.+++|..++-++.+-+...+.-+--......|+.++++|+++|+++++.++
T Consensus 6 eSSGLVREvs~lDAF~~Nl~~m~~Gi~Is~~~l~a~l~pG~nlLLAWLLGGLlALPgAL 64 (399)
T PHA02764 6 KSSGIIKSFNILDIFSINLLYMGILSGISYPLFVSSLLKNVNLLFAILIGAVFEIPLLL 64 (399)
T ss_pred hcCCceeeccHHHHHHHHHHhhccchhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 46789999999999999888765433222122222112456789999999999999876
No 38
>PRK10483 tryptophan permease; Provisional
Probab=92.43 E-value=0.21 Score=41.82 Aligned_cols=54 Identities=15% Similarity=0.091 Sum_probs=37.9
Q ss_pred ccccccChhhHHHhhhcceecchhhHhhHHHHHhhhCh-HHHHHHHHHHHHHHHHhc
Q psy6072 51 QLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVQ 106 (107)
Q Consensus 51 ~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp-~~lla~liagl~~ll~Al 106 (107)
..|+..+.+..+++..|++||+|++-.|-..+ .+|- .+++..+++-+.+..+|+
T Consensus 6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a--~~GF~~s~~~l~~~W~~M~~taL 60 (414)
T PRK10483 6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMS--GAWFFWSMAALIFTWFCMLHSGL 60 (414)
T ss_pred cccCCCcHHHHHHHHHHchHhHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHHHH
Confidence 35778899999999999999999999986543 4664 444444444444444443
No 39
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=92.34 E-value=0.21 Score=41.01 Aligned_cols=49 Identities=24% Similarity=0.255 Sum_probs=33.8
Q ss_pred ccChhhHHHhhhcceecchhhHhhHHHHHhhhCh-HHHHHHHHHHHHHHHHh
Q psy6072 55 VLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSV 105 (107)
Q Consensus 55 ~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp-~~lla~liagl~~ll~A 105 (107)
+-+.+..+++.+|++||+|++.+|-... .+|. ..++..+++..++...+
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~--~~Gf~~~~~~l~~~w~~~~~s~ 51 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIATA--GAGFLPSLILLLIAWPLMYYSG 51 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHHHH--hCchHHHHHHHHHHHHHHHHHH
Confidence 3467888999999999999999997653 4775 44444444444444443
No 40
>PRK09664 tryptophan permease TnaB; Provisional
Probab=91.77 E-value=0.25 Score=41.43 Aligned_cols=48 Identities=23% Similarity=0.110 Sum_probs=33.4
Q ss_pred ChhhHHHhhhcceecchhhHhhHHHHHhhhCh-HHHHHHHHHHHHHHHHhc
Q psy6072 57 GLVDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVQ 106 (107)
Q Consensus 57 ~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp-~~lla~liagl~~ll~Al 106 (107)
+.+..+++..|++||+|++-.|-..+ .+|- .+++..+++-+.+..+|+
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~a--~~Gf~~s~~ll~~~w~~M~~t~L 58 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDLA--GAWFFWGAFILIIAWFSMLHSGL 58 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHHh--cccHHHHHHHHHHHHHHHHHHHH
Confidence 66779999999999999999986543 4674 444444444445555444
No 41
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=90.45 E-value=0.28 Score=38.32 Aligned_cols=49 Identities=24% Similarity=0.383 Sum_probs=39.3
Q ss_pred ccChhhHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHHHh
Q psy6072 55 VLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSV 105 (107)
Q Consensus 55 ~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll~A 105 (107)
+++.++...+.+..++|+|++..|+..++ .+| .++++.+++++.++..+
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~-~~~-d~Wi~~ll~~~~~l~~~ 49 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAE-QAG-DAWISVLLGGLIGLLLA 49 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHH-HcC-CcHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999875 566 66667777766665544
No 42
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=89.91 E-value=0.5 Score=39.04 Aligned_cols=53 Identities=17% Similarity=0.245 Sum_probs=39.0
Q ss_pred ccccccChhhHHHhhhcceecchhhHhhHHHHHhhhCh-HHHHHHHHHHHHHHHHh
Q psy6072 51 QLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSV 105 (107)
Q Consensus 51 ~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp-~~lla~liagl~~ll~A 105 (107)
..++.-+....+++.+|++||+|++..|-.. ..+|- ..++..++++..+.++.
T Consensus 4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~--~~~G~~~~l~~l~i~~~~t~~s~ 57 (415)
T COG0814 4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVAF--GGGGFWPGLLLLIIAWPLTYLSL 57 (415)
T ss_pred cccCCcchHHHHHHHHccccccchhhhhHHh--cCCcHHHHHHHHHHHHHHHHHHH
Confidence 3466678889999999999999999999653 35776 45555666666665554
No 43
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=89.26 E-value=0.85 Score=38.35 Aligned_cols=46 Identities=13% Similarity=0.187 Sum_probs=37.0
Q ss_pred ccccChhhHHHhhhcceecchhhHhhHHHHHhhhCh-HHHHHHHHHHH
Q psy6072 53 ARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAV 99 (107)
Q Consensus 53 ~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp-~~lla~liagl 99 (107)
++.++.++..+.++++.||+|=..+....+ ..+|| ++++-|+.+-+
T Consensus 16 ~g~iS~fqA~~~ala~~vG~GNI~GVa~AI-~~GGPGAiFWMWi~a~~ 62 (416)
T PF01235_consen 16 EGGISPFQALCTALAGTVGTGNIAGVATAI-AIGGPGAIFWMWISALL 62 (416)
T ss_pred CCCcChHHHHHHHHHhccCcchHHHHHHHH-HhhchhHHHHHHHHHHH
Confidence 458999999999999999999999988777 48999 45555555433
No 44
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=86.72 E-value=0.95 Score=37.58 Aligned_cols=30 Identities=20% Similarity=0.333 Sum_probs=24.8
Q ss_pred ChhhHHHhhhcceecchhhHhhHHHHHhhhCh
Q psy6072 57 GLVDLTMLGVGATLGVGVYVLAGSVARNQAGP 88 (107)
Q Consensus 57 ~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp 88 (107)
+.+..+++..|++||+|++.+|-... .+|.
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~--~~Gf 33 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAA--GVGF 33 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHH--hChH
Confidence 56778899999999999999997543 4775
No 45
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=85.96 E-value=0.56 Score=38.71 Aligned_cols=39 Identities=18% Similarity=0.224 Sum_probs=26.2
Q ss_pred hHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHH
Q psy6072 60 DLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLF 103 (107)
Q Consensus 60 ~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll 103 (107)
..+...+|.+||+|++.+|... |+..+++|+++++++..
T Consensus 7 ~w~~~l~gt~IGaGiL~LP~~a-----g~~G~i~~li~~l~~~p 45 (397)
T TIGR00814 7 GWMLGLYGTAIGAGVLFLPIQA-----GLGGLWVLVLMAIIAYP 45 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-----HhCHHHHHHHHHHHHHH
Confidence 4466778999999999999853 23335555555554443
No 46
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=85.95 E-value=2.6 Score=36.09 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=38.2
Q ss_pred ccccccChhhHHHhhhcceecchhhHhhHHHHHhhhCh-HHHHHHHHHH
Q psy6072 51 QLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAA 98 (107)
Q Consensus 51 ~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp-~~lla~liag 98 (107)
+-++.+++++..+.++++.||+|=..+....+ ..+|| ++++=|+++-
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI-~~GGPGAvFWMWi~Al 105 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAI-ALGGPGAVFWMWIVAL 105 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHH-HcCCCccHHHHHHHHH
Confidence 44678899999999999999999999888776 48999 5666666543
No 47
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=79.48 E-value=2 Score=36.25 Aligned_cols=40 Identities=18% Similarity=0.312 Sum_probs=30.3
Q ss_pred cccChhhHHHhhhcceecch-hhHhhHHHHHhhhCh-HHHHHHH
Q psy6072 54 RVLGLVDLTMLGVGATLGVG-VYVLAGSVARNQAGP-SVVISFA 95 (107)
Q Consensus 54 r~L~~~~l~~l~vG~~IGaG-IFv~~g~v~~~~aGp-~~lla~l 95 (107)
..++.++..+.++++.||+| |.-.+.. + ..+|| ++++-|+
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~A-i-~~GGpGAvFWMWI 86 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATA-I-AIGGPGAVFWMWV 86 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHH-H-HhcCCCchHHHHH
Confidence 45899999999999999998 7666655 4 47999 4343343
No 48
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=78.13 E-value=2.6 Score=34.69 Aligned_cols=47 Identities=21% Similarity=0.275 Sum_probs=33.6
Q ss_pred cccChhhHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHH-HHh
Q psy6072 54 RVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSL-FSV 105 (107)
Q Consensus 54 r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~l-l~A 105 (107)
|+|+.++++++.+.++++- +..|. . ..+||+++++|++++++.+ +.+
T Consensus 1 ~~~~~~~l~~~~~~~v~~~--~~~~~--~-a~~G~~~~~~~~i~~~~~~ip~a 48 (474)
T TIGR03813 1 KKLTVVTLAIMNITAVVSL--RGLPA--E-AEYGLSAAFYYLFAAIFFLVPVS 48 (474)
T ss_pred CcccHHHHHHHHHHHHHHh--hcchH--H-HHhhHHHHHHHHHHHHHHHHHHH
Confidence 3488899998888777643 33343 2 2589999999999998764 344
No 49
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=75.80 E-value=3.8 Score=32.22 Aligned_cols=47 Identities=19% Similarity=0.224 Sum_probs=33.9
Q ss_pred ccChhhHHHhhhcceecchhhHhhHHHHHhhhCh-HHHHHHHHHHHHHHH
Q psy6072 55 VLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLF 103 (107)
Q Consensus 55 ~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp-~~lla~liagl~~ll 103 (107)
+-+.++..+..+++++|+|++..|-... .+|- ..++..++.++++..
T Consensus 2 ~~s~~~~~~~l~~~~iG~G~L~lP~af~--~~G~~~g~i~l~~~~~~s~~ 49 (409)
T PF01490_consen 2 KGSWFSAFFNLINSIIGAGILSLPYAFA--QSGWVLGIILLVLVALLSYY 49 (409)
T ss_pred CccHHHHHHHHHHHHHhHHHHHHHHHHH--HhhhhhhhHHHHHHHHHHHH
Confidence 4578889999999999999999998664 4776 344444445544443
No 50
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=74.35 E-value=4.4 Score=34.48 Aligned_cols=42 Identities=17% Similarity=0.330 Sum_probs=26.6
Q ss_pred HHHhhhcceecchhhHhhHHHHHhhhCh-HHHHHHHHHHHHHHHH
Q psy6072 61 LTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFS 104 (107)
Q Consensus 61 l~~l~vG~~IGaGIFv~~g~v~~~~aGp-~~lla~liagl~~ll~ 104 (107)
.+....|++||+|++++|=... ..|. ..++..+++-.++.++
T Consensus 24 W~l~l~GTAIGAGmLfLPI~~g--~~Gf~p~lillll~~p~m~~s 66 (443)
T PRK13629 24 WTLGLFGTAIGAGVLFFPIRAG--FGGLIPILLMLVLAYPIAFYC 66 (443)
T ss_pred HHHHHHHHHHhHHHHHHHHHHh--cchHHHHHHHHHHHHHHHHHH
Confidence 3466789999999999996543 5776 3444444444444433
No 51
>KOG1303|consensus
Probab=73.54 E-value=9.1 Score=32.33 Aligned_cols=50 Identities=24% Similarity=0.270 Sum_probs=34.1
Q ss_pred cccccChhhHHHhhhcceecchhhHhhHHHHHhhhCh-HHHHHHHHHHHHHHH
Q psy6072 52 LARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLF 103 (107)
Q Consensus 52 L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp-~~lla~liagl~~ll 103 (107)
-+|+.+.++..+..++.++|.|+..+|-.+. ..|= +-++..++.+++.+-
T Consensus 34 ~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~--~lGW~~G~~~Ll~~~iit~Y 84 (437)
T KOG1303|consen 34 PSRGGSWWQAAFHIINALIGAGVLSLPYALA--QLGWISGIVILLLFAIITLY 84 (437)
T ss_pred cCCCCcceehhhheehhhhhhhhhhhHHHHH--hCchHHHHHHHHHHHHHHHH
Confidence 3667899999999999999999999995443 3553 213333444444433
No 52
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=69.31 E-value=6 Score=32.67 Aligned_cols=41 Identities=15% Similarity=0.193 Sum_probs=33.3
Q ss_pred hhcceecchhhHhhHHHHHhhhCh---HHHHHHHHHHHHHHHHhc
Q psy6072 65 GVGATLGVGVYVLAGSVARNQAGP---SVVISFAIAAVTSLFSVQ 106 (107)
Q Consensus 65 ~vG~~IGaGIFv~~g~v~~~~aGp---~~lla~liagl~~ll~Al 106 (107)
-++.-+|+|.++-|..+.+ .+|. .++++|+++|+...+.++
T Consensus 4 lFamffGAGNlIfPp~lG~-~aG~~~~~a~lgf~ltgV~lpllgl 47 (378)
T TIGR00796 4 LFALFFGAGNIIFPPMLGL-AAGEHVWTAALGFLLTGVGLPLLGL 47 (378)
T ss_pred HHHHHHhhhHHhhhHHHHH-HhCccHHHHHHHHHHHHHHHHHHHH
Confidence 3566789999999998875 6775 478899999999888765
No 53
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=66.59 E-value=11 Score=24.43 Aligned_cols=34 Identities=35% Similarity=0.441 Sum_probs=26.8
Q ss_pred ccccccccChhhHHHhhhcceecchhhHhhHHHH
Q psy6072 49 APQLARVLGLVDLTMLGVGATLGVGVYVLAGSVA 82 (107)
Q Consensus 49 ~~~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~ 82 (107)
+++.=-.+|.+++.+++.+..++.|+|......+
T Consensus 10 e~ki~~GlT~RQl~~l~~~~~~~~~~~~~~~~~l 43 (93)
T PF12666_consen 10 EEKIFFGLTLRQLICLAIGALVGVGVYLLLWFFL 43 (93)
T ss_pred cchhccCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445556799999999999999999998765443
No 54
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=65.15 E-value=9.2 Score=32.17 Aligned_cols=43 Identities=21% Similarity=0.324 Sum_probs=33.4
Q ss_pred ccccChhhHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHH
Q psy6072 53 ARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVT 100 (107)
Q Consensus 53 ~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~ 100 (107)
+|+|+.++++++.++.++ +++..|. .+ ..|++.+.-|++++++
T Consensus 3 ~~~l~~~~~~~~~~~~v~--~~~~~~~-~a--~~G~~~i~~~i~~~l~ 45 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVL--AVYEYPT-FA--TSGFHLVFFLLLGGIL 45 (507)
T ss_pred CcEeeHHHHHHHHHHHHH--HHHhhHH-HH--HhhHHHHHHHHHHHHH
Confidence 566999999999999886 6676664 32 5888888778888776
No 55
>KOG1304|consensus
Probab=53.76 E-value=47 Score=28.50 Aligned_cols=47 Identities=11% Similarity=0.222 Sum_probs=32.0
Q ss_pred ccccChhhHHHhhhcceecchhhHhhHHHHHhhhCh--HHHHHHHHHHHHH
Q psy6072 53 ARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGP--SVVISFAIAAVTS 101 (107)
Q Consensus 53 ~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp--~~lla~liagl~~ 101 (107)
+...+..+...--+=+++|+|++-.|... +.+|- +.+...+++.+..
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AF--k~sG~~~G~~~~~~i~~l~~ 92 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLAF--KNSGLVMGLLLTVFIGFLCT 92 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHHH--HhcchHHHHHHHHHHHHHHH
Confidence 44567777777778899999999999754 36887 3444444444433
No 56
>PTZ00206 amino acid transporter; Provisional
Probab=50.86 E-value=58 Score=27.18 Aligned_cols=43 Identities=19% Similarity=0.306 Sum_probs=28.3
Q ss_pred ChhhHHHhhhcceecchhhHhhHHHHHhhhCh-HHHHHHHHHHHHH
Q psy6072 57 GLVDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTS 101 (107)
Q Consensus 57 ~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp-~~lla~liagl~~ 101 (107)
|.....+-.+.++||+|++..|.... .+|- ..++..++.++++
T Consensus 61 g~~~s~fnL~~~~iGaGILsLP~Af~--~~G~v~giillil~a~ls 104 (467)
T PTZ00206 61 GIAASAFNIASSTVGAGIVGLPSAAN--SSGLVMAMIYLIIITAMT 104 (467)
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHH--HhhHHHHHHHHHHHHHHH
Confidence 34566777788999999999998653 5775 3334444444444
No 57
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=50.79 E-value=25 Score=24.81 Aligned_cols=31 Identities=23% Similarity=0.164 Sum_probs=23.1
Q ss_pred CccccccccChhhHHHhhhcceecchhhHhh
Q psy6072 48 DAPQLARVLGLVDLTMLGVGATLGVGVYVLA 78 (107)
Q Consensus 48 ~~~~L~r~L~~~~l~~l~vG~~IGaGIFv~~ 78 (107)
...+.++.++..--+++.+.++.-+|+|+.-
T Consensus 71 ~~k~~~~qls~v~Nilvsv~~~~~~~~~~~~ 101 (142)
T PF11712_consen 71 ELKSVKRQLSTVFNILVSVFAVFFAGWYWAG 101 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789998888888888887777776654
No 58
>PLN03074 auxin influx permease; Provisional
Probab=49.49 E-value=47 Score=28.03 Aligned_cols=43 Identities=14% Similarity=0.051 Sum_probs=27.8
Q ss_pred ChhhHHHhhhcceecchhhHhhHHHHHhhhCh-HHHHHHHHHHHHH
Q psy6072 57 GLVDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTS 101 (107)
Q Consensus 57 ~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp-~~lla~liagl~~ 101 (107)
+..+...-.+...||.||+.+|-... .+|- ..++..++.++++
T Consensus 47 s~~~~~~~l~~~~vG~GILaLP~Af~--~~G~v~Gii~lv~~~~l~ 90 (473)
T PLN03074 47 SVYDAWFSCASNQVAQVLLTLPYSFS--QLGMLSGILFQIFYGLLG 90 (473)
T ss_pred hHHHHHHHHHHHHHhHHHHhHHHHHH--HccHHHHHHHHHHHHHHH
Confidence 44555555788889999999997653 5775 3444455555443
No 59
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.36 E-value=24 Score=25.04 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=30.0
Q ss_pred cccccChhhHH-HhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHH
Q psy6072 52 LARVLGLVDLT-MLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSL 102 (107)
Q Consensus 52 L~r~L~~~~l~-~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~l 102 (107)
.+.....+.+. =+.-|.++|++|=+..-..+ .+.||-+|.+++-|+.+-
T Consensus 39 ~k~~~~a~klssefIsGilVGa~iG~llD~~a--gTsPwglIv~lllGf~AG 88 (116)
T COG5336 39 IKGYAQAFKLSSEFISGILVGAGIGWLLDKFA--GTSPWGLIVFLLLGFGAG 88 (116)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHH
Confidence 34444444433 35557778887755555543 578988888877665543
No 60
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=38.12 E-value=24 Score=24.77 Aligned_cols=43 Identities=21% Similarity=0.241 Sum_probs=25.9
Q ss_pred hhHHHhhh--cceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHH
Q psy6072 59 VDLTMLGV--GATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLF 103 (107)
Q Consensus 59 ~~l~~l~v--G~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll 103 (107)
++..+.++ |..||..-|+.++.+. .+--+++.+|+++++++..
T Consensus 41 R~slL~Gi~~G~~vG~~~fl~~~~~~--~A~nwavgsF~l~s~~~we 85 (118)
T PF12597_consen 41 RDSLLYGIAGGFGVGGLRFLFTSNPR--KAANWAVGSFFLGSLGSWE 85 (118)
T ss_pred HHHHHHHHHHHHHHHhhhhcccCCCc--cchhhhhHHHHHHHHHHHH
Confidence 34444444 4555555677776553 2445777788887776654
No 61
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=34.64 E-value=64 Score=22.85 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=14.7
Q ss_pred hhHHHhhhcceecchhhHhhHHHH
Q psy6072 59 VDLTMLGVGATLGVGVYVLAGSVA 82 (107)
Q Consensus 59 ~~l~~l~vG~~IGaGIFv~~g~v~ 82 (107)
..+++++++-|++ |+|+.++..+
T Consensus 16 l~lif~g~~vmy~-gi~f~~~~~i 38 (114)
T PF11023_consen 16 LSLIFIGMIVMYI-GIFFKASPII 38 (114)
T ss_pred HHHHHHHHHHHhh-hhhhcccHHH
Confidence 3456677777776 7877655443
No 62
>KOG1305|consensus
Probab=26.36 E-value=1.4e+02 Score=25.06 Aligned_cols=34 Identities=15% Similarity=0.235 Sum_probs=27.0
Q ss_pred ccccChhhHHHhhhcceecchhhHhhHHHHHhhhCh
Q psy6072 53 ARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGP 88 (107)
Q Consensus 53 ~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp 88 (107)
++..+.+..+.--+.+++|+||+..|-.. + .+|-
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~af-k-~~Gi 36 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAF-K-TAGL 36 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHH-H-HhcH
Confidence 44557788888899999999999999754 3 5774
No 63
>PRK11375 allantoin permease; Provisional
Probab=25.46 E-value=2.9e+02 Score=23.29 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=21.5
Q ss_pred ccccccChhhHHHhhhcceecchhhHhhHHHH
Q psy6072 51 QLARVLGLVDLTMLGVGATLGVGVYVLAGSVA 82 (107)
Q Consensus 51 ~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~ 82 (107)
+-+|+-++++...+=+|..+...-+...|..+
T Consensus 22 ~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l 53 (484)
T PRK11375 22 QSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFF 53 (484)
T ss_pred ccccCCcHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34777888888888888777766654333333
No 64
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=23.95 E-value=1.5e+02 Score=20.69 Aligned_cols=46 Identities=13% Similarity=0.006 Sum_probs=24.3
Q ss_pred hhhHHHhhhcceecchhhHhhHHHHHhhh--Ch-HHHHHHHHHHHHHHH
Q psy6072 58 LVDLTMLGVGATLGVGVYVLAGSVARNQA--GP-SVVISFAIAAVTSLF 103 (107)
Q Consensus 58 ~~~l~~l~vG~~IGaGIFv~~g~v~~~~a--Gp-~~lla~liagl~~ll 103 (107)
.|..+++++.-.+..-+++..|......- +. .-.+++++.|+++++
T Consensus 40 pwK~I~la~~Lli~G~~li~~g~l~~~~~i~~~~~~~~~llilG~L~fI 88 (115)
T PF05915_consen 40 PWKSIALAVFLLIFGTVLIIIGLLLFFGHIDGDRDRGWALLILGILCFI 88 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHh
Confidence 47777777776665555555554442111 22 344456666665543
No 65
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=22.58 E-value=37 Score=21.02 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=18.1
Q ss_pred HHHHHHHhhccccCCCCCchhhhc
Q psy6072 4 LRNLYEALSRKKIDVGDDDVSIAE 27 (107)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~ 27 (107)
+++|.++|.+-|++|.-+|.+..+
T Consensus 32 ~~DF~~Al~~~kpSVs~~dl~~ye 55 (62)
T PF09336_consen 32 MEDFEEALKKVKPSVSQEDLKKYE 55 (62)
T ss_dssp HHHHHHHHHTCGGSS-HHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHH
Confidence 578999999999988877765543
No 66
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=22.46 E-value=79 Score=17.33 Aligned_cols=13 Identities=0% Similarity=0.100 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHH
Q psy6072 92 ISFAIAAVTSLFS 104 (107)
Q Consensus 92 la~liagl~~ll~ 104 (107)
++|+++..++.+.
T Consensus 4 faWilG~~lA~~~ 16 (30)
T TIGR02106 4 FAWILGTLLACAF 16 (30)
T ss_pred HHHHHHHHHHHHH
Confidence 4666655544443
Done!