Query psy6072
Match_columns 107
No_of_seqs 126 out of 1304
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 16:56:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6072.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6072hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 98.6 5.6E-08 1.9E-12 75.8 4.8 55 50-106 4-58 (445)
2 3gia_A Uncharacterized protein 98.4 1.2E-07 3.9E-12 74.2 3.5 54 52-106 4-57 (444)
3 4djk_A Probable glutamate/gamm 96.8 0.0012 4.1E-08 52.2 4.6 50 48-102 5-54 (511)
4 2jln_A MHP1; hydantoin, transp 17.3 2E+02 0.0068 22.9 5.1 29 53-81 24-52 (501)
5 2pco_A Latarcin-1, LTC-1; cont 14.5 77 0.0026 16.1 1.3 15 2-16 9-23 (26)
6 2fcg_F Cationic, antibacterial 12.4 87 0.003 15.9 1.1 13 2-14 10-22 (26)
7 2wsc_G Photosystem I reaction 8.2 2.9E+02 0.01 19.7 3.0 25 53-77 132-157 (167)
8 4dve_A Biotin transporter BIOY 7.3 1.1E+02 0.0036 22.2 0.3 49 53-102 63-114 (198)
9 2wsc_K Photosystem I reaction 6.6 1.7E+02 0.0057 20.2 1.0 29 49-77 90-119 (131)
10 2a65_A Leutaa, Na(+):neurotran 6.5 4.6E+02 0.016 21.4 3.9 43 57-100 10-53 (519)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=98.55 E-value=5.6e-08 Score=75.80 Aligned_cols=55 Identities=24% Similarity=0.428 Sum_probs=47.4
Q ss_pred cccccccChhhHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHHHhc
Q psy6072 50 PQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQ 106 (107)
Q Consensus 50 ~~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll~Al 106 (107)
++.+|+++.++++++++|++||+|+|..|+.+. .+||.++++|+++++++++.++
T Consensus 4 ~~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~--~~G~~~~~~~li~~~~~~~~a~ 58 (445)
T 3l1l_A 4 DADAHKVGLIPVTLMVSGAIMGSGVFLLPANLA--STGGIAIYGWLVTIIGALGLSM 58 (445)
T ss_dssp ---CCCBCHHHHHHHHHHHHCSSHHHHHHHHHH--HHCTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcccHHHHHHHHHHhHHhhhHHhhHHHHH--HhhhHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999998754 5899889999999999988764
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=98.42 E-value=1.2e-07 Score=74.18 Aligned_cols=54 Identities=20% Similarity=0.388 Sum_probs=49.6
Q ss_pred cccccChhhHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHHHhc
Q psy6072 52 LARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQ 106 (107)
Q Consensus 52 L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll~Al 106 (107)
.||+++.++++++++|++||+|+|..++..+ ..+||+++++|+++++++++.++
T Consensus 4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~-~~~G~~~~~~~li~~~~~~~~~~ 57 (444)
T 3gia_A 4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGA-KIAGRNLPETFILSGIYALLVAY 57 (444)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHH-HHHGGGHHHHHHHHHHHHHHHHH
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCcHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999887 47999999999999999988764
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=96.80 E-value=0.0012 Score=52.19 Aligned_cols=50 Identities=16% Similarity=0.206 Sum_probs=34.6
Q ss_pred CccccccccChhhHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHH
Q psy6072 48 DAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSL 102 (107)
Q Consensus 48 ~~~~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~l 102 (107)
++++++|+++.+++++++++.++| ++..++ . ..+||+.++.|++++++.+
T Consensus 5 ~~~~~~r~l~~~~~~~l~~~~~ig--~~~~~~--~-~~~G~~~~~~~~i~~~~~~ 54 (511)
T 4djk_A 5 VQTGKAKQLTLLGFFAITASMVMA--VYEYPT--F-ATSGFSLVFFLLLGGILWF 54 (511)
T ss_dssp -------CCCHHHHHHHTGGGGCC--GGGHHH--H-HTTTTHHHHHHHHHHHHTH
T ss_pred ccCccCccccHHHHHHHHHHHHHh--hchhHH--H-HhhHHHHHHHHHHHHHHHH
Confidence 456789999999999999999996 555554 2 3689988888888887654
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=17.32 E-value=2e+02 Score=22.91 Aligned_cols=29 Identities=21% Similarity=0.463 Sum_probs=23.0
Q ss_pred ccccChhhHHHhhhcceecchhhHhhHHH
Q psy6072 53 ARVLGLVDLTMLGVGATLGVGVYVLAGSV 81 (107)
Q Consensus 53 ~r~L~~~~l~~l~vG~~IGaGIFv~~g~v 81 (107)
+|+.+.++...+-+|..+..+-|...+..
T Consensus 24 ~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~ 52 (501)
T 2jln_A 24 ERSVGPFSLAAIWFAMAIQVAIFIAAGQM 52 (501)
T ss_dssp GCCBCHHHHHHHHHHHHCSTHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999888888664443
No 5
>2pco_A Latarcin-1, LTC-1; continuous helix, toxin; NMR {Synthetic}
Probab=14.48 E-value=77 Score=16.08 Aligned_cols=15 Identities=33% Similarity=0.474 Sum_probs=11.2
Q ss_pred hhHHHHHHHhhcccc
Q psy6072 2 SRLRNLYEALSRKKI 16 (107)
Q Consensus 2 ~~~~~~~~~~~~~~~ 16 (107)
..|+.|+++|.||-.
T Consensus 9 eklKkf~~~lk~k~~ 23 (26)
T 2pco_A 9 RKLKKLRNALKKKLK 23 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 357889999988643
No 6
>2fcg_F Cationic, antibacterial protein FALL-39, core peptide; HOST defense peptide, antimicrobial peptide, antimicrobial protein; NMR {Synthetic}
Probab=12.42 E-value=87 Score=15.90 Aligned_cols=13 Identities=15% Similarity=0.501 Sum_probs=8.7
Q ss_pred hhHHHHHHHhhcc
Q psy6072 2 SRLRNLYEALSRK 14 (107)
Q Consensus 2 ~~~~~~~~~~~~~ 14 (107)
|++++|...|..+
T Consensus 10 QkIkdFf~~l~pr 22 (26)
T 2fcg_F 10 QRIKDFLRNLVPR 22 (26)
T ss_dssp HHHHHHHHHSCCS
T ss_pred HHHHHHHHhcCcc
Confidence 6777777766653
No 7
>2wsc_G Photosystem I reaction center subunit V, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Spinacia oleracea} PDB: 2wse_G* 2wsf_G* 2o01_G* 3lw5_G*
Probab=8.24 E-value=2.9e+02 Score=19.67 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=18.5
Q ss_pred ccccChhhHHHhh-hcceecchhhHh
Q psy6072 53 ARVLGLVDLTMLG-VGATLGVGVYVL 77 (107)
Q Consensus 53 ~r~L~~~~l~~l~-vG~~IGaGIFv~ 77 (107)
+-.++..|+.+++ +|.+||.||.-+
T Consensus 132 PAGFtiVDVLAwGSlGHiIg~~iLAt 157 (167)
T 2wsc_G 132 PVGFNIVDVLAWGSIGHIVAYYILAT 157 (167)
T ss_dssp GGGSTTHHHHTTTSSSCSCSSCCSSC
T ss_pred CCcchHHHHHHhhhHHHHHHHhhhhh
Confidence 4566778888775 788998887644
No 8
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=7.28 E-value=1.1e+02 Score=22.18 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=29.5
Q ss_pred ccccChhhHHHhhhcceecchhhHhh-HHHHHhhhCh--HHHHHHHHHHHHHH
Q psy6072 53 ARVLGLVDLTMLGVGATLGVGVYVLA-GSVARNQAGP--SVVISFAIAAVTSL 102 (107)
Q Consensus 53 ~r~L~~~~l~~l~vG~~IGaGIFv~~-g~v~~~~aGp--~~lla~liagl~~l 102 (107)
..+.+......+.+-+.+|-=+|..- |... ...|| +-+++|++++.++-
T Consensus 63 G~r~G~lsv~lYlllG~~GlPVFagg~gG~~-~l~gPTgGYLiGF~~aA~v~G 114 (198)
T 4dve_A 63 GPKYGTISVGAFLALALIGLPVLTGGNGGAA-SFLGPSGGYRIAWLFTPFLIG 114 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCBTTTBCCSG-GGGSTTHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHcCccccCCCCchh-HHhcchhHHHHHHHHHHHHHH
Confidence 34445555556556666666666643 3332 46788 67888888776543
No 9
>2wsc_K Photosystem I reaction center subunit PSAK, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Hordeum vulgare} PDB: 2wse_K* 2wsf_K* 3lw5_K*
Probab=6.57 E-value=1.7e+02 Score=20.23 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=21.3
Q ss_pred ccccccccChhhHHHh-hhcceecchhhHh
Q psy6072 49 APQLARVLGLVDLTML-GVGATLGVGVYVL 77 (107)
Q Consensus 49 ~~~L~r~L~~~~l~~l-~vG~~IGaGIFv~ 77 (107)
.++....++..++++. .+|++||.|+..+
T Consensus 90 ~s~dpaGF~l~dvLA~gSlGHIIG~GiILG 119 (131)
T 2wsc_K 90 QTGDPAGFTLADTLACGAVGHIMGVGIVLG 119 (131)
T ss_dssp SCCCTHHHHTTHHHHTTSSSTTTSSSCCCS
T ss_pred ccCCCCCCCHHHHHHHhhHHHHHHHHHHHc
Confidence 3455667777777754 5899999998775
No 10
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=6.54 E-value=4.6e+02 Score=21.37 Aligned_cols=43 Identities=21% Similarity=0.383 Sum_probs=31.7
Q ss_pred ChhhHHHhhhcceecchhhHh-hHHHHHhhhChHHHHHHHHHHHH
Q psy6072 57 GLVDLTMLGVGATLGVGVYVL-AGSVARNQAGPSVVISFAIAAVT 100 (107)
Q Consensus 57 ~~~~l~~l~vG~~IGaGIFv~-~g~v~~~~aGp~~lla~liagl~ 100 (107)
+..+.++-.+|+.||-|=+.- |-... +++|-+-++.|+++-++
T Consensus 10 sr~~FiLa~~G~AVGLGNiWRFPyl~~-~nGGgAFlipYli~l~~ 53 (519)
T 2a65_A 10 TRLGLILAMAGNAVGLGNFLRFPVQAA-ENGGGAFMIPYIIAFLL 53 (519)
T ss_dssp CHHHHHHHHHHHHSSHHHHTHHHHHHH-HTTTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHH-HcCCcHHHHHHHHHHHH
Confidence 446778888999999997765 55544 57777888888876544
Done!