Query psy6072
Match_columns 107
No_of_seqs 126 out of 1304
Neff 5.4
Searched_HMMs 13730
Date Fri Aug 16 16:57:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6072.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6072hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2a65a1 f.54.1.1 (A:5-513) Na( 5.6 2.7E+02 0.02 20.0 3.9 43 57-100 6-49 (509)
2 d2bcgg1 c.3.1.3 (G:5-301) Guan 4.5 97 0.007 18.1 0.4 7 69-75 10-16 (297)
3 d1cola_ f.1.1.1 (A:) Colicin A 4.3 4.8E+02 0.035 17.2 4.1 16 88-103 167-182 (197)
4 d1jb0k_ f.30.1.1 (K:) Photosys 4.1 1.2E+02 0.0088 16.6 0.6 26 51-76 30-56 (58)
5 d1z6ra3 c.55.1.10 (A:211-406) 3.9 27 0.002 22.0 -2.9 17 60-76 4-20 (196)
6 d1x63a2 g.39.1.3 (A:45-76) Fou 3.9 64 0.0047 15.6 -0.7 12 68-79 7-18 (32)
7 d1a87a_ f.1.1.1 (A:) Colicin N 3.3 2.3E+02 0.017 20.2 1.7 21 86-106 259-279 (297)
8 d1kifa1 c.4.1.2 (A:1-194,A:288 3.3 2E+02 0.014 17.3 1.2 10 68-77 4-13 (246)
9 d1xc3a2 c.55.1.10 (A:119-294) 3.2 33 0.0024 21.3 -2.9 16 61-76 5-20 (176)
10 d2dw4a2 c.3.1.2 (A:274-654,A:7 3.1 1.5E+02 0.011 17.9 0.4 6 69-74 10-15 (449)
No 1
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=5.61 E-value=2.7e+02 Score=20.03 Aligned_cols=43 Identities=21% Similarity=0.383 Sum_probs=30.7
Q ss_pred ChhhHHHhhhcceecchhhHh-hHHHHHhhhChHHHHHHHHHHHH
Q psy6072 57 GLVDLTMLGVGATLGVGVYVL-AGSVARNQAGPSVVISFAIAAVT 100 (107)
Q Consensus 57 ~~~~l~~l~vG~~IGaGIFv~-~g~v~~~~aGp~~lla~liagl~ 100 (107)
+..+.++-.+|..||-|=+.- |-... +++|-+-++.|++.-++
T Consensus 6 s~~~fila~~g~avGlGNiWrFPyl~~-~nGGgaFlipY~~~l~l 49 (509)
T d2a65a1 6 TRLGLILAMAGNAVGLGNFLRFPVQAA-ENGGGAFMIPYIIAFLL 49 (509)
T ss_dssp CHHHHHHHHHHHHSSHHHHTHHHHHHH-HTTTHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcccHHHhhhHHHH-hcCCchhHHHHHHHHHH
Confidence 345677778899999987764 66555 57787778888776543
No 2
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.53 E-value=97 Score=18.07 Aligned_cols=7 Identities=43% Similarity=0.876 Sum_probs=4.2
Q ss_pred eecchhh
Q psy6072 69 TLGVGVY 75 (107)
Q Consensus 69 ~IGaGIF 75 (107)
+||+|+=
T Consensus 10 ViGaG~~ 16 (297)
T d2bcgg1 10 VLGTGIT 16 (297)
T ss_dssp EECCSHH
T ss_pred EECcCHH
Confidence 5666663
No 3
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Probab=4.29 E-value=4.8e+02 Score=17.22 Aligned_cols=16 Identities=19% Similarity=0.225 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHHHH
Q psy6072 88 PSVVISFAIAAVTSLF 103 (107)
Q Consensus 88 p~~lla~liagl~~ll 103 (107)
|..++++++.++++.+
T Consensus 167 ~iGI~g~li~~~v~al 182 (197)
T d1cola_ 167 AVGIAGILLAAVVGAL 182 (197)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445566666665544
No 4
>d1jb0k_ f.30.1.1 (K:) Photosystem I reaction center subunit X, PsaK {Synechococcus elongatus [TaxId: 32046]}
Probab=4.05 E-value=1.2e+02 Score=16.64 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=12.4
Q ss_pred ccccccChhhHH-HhhhcceecchhhH
Q psy6072 51 QLARVLGLVDLT-MLGVGATLGVGVYV 76 (107)
Q Consensus 51 ~L~r~L~~~~l~-~l~vG~~IGaGIFv 76 (107)
++-..++...++ ...+|.++|+|...
T Consensus 30 ~~fgg~g~~~lLat~s~GHilG~G~IL 56 (58)
T d1jb0k_ 30 ALFEGFGLPELLATTSFGHLLAAGVVS 56 (58)
T ss_dssp ------CCTTGGGHHHHHHHHHHHHTT
T ss_pred hhccCCCHHHHHHHhhHHHHHhhhhhh
Confidence 455555554443 34677888887654
No 5
>d1z6ra3 c.55.1.10 (A:211-406) Mlc protein {Escherichia coli [TaxId: 562]}
Probab=3.91 E-value=27 Score=22.02 Aligned_cols=17 Identities=24% Similarity=0.473 Sum_probs=10.9
Q ss_pred hHHHhhhcceecchhhH
Q psy6072 60 DLTMLGVGATLGVGVYV 76 (107)
Q Consensus 60 ~l~~l~vG~~IGaGIFv 76 (107)
+++.+.+|.-||+|++.
T Consensus 4 n~~~i~ig~GiG~gii~ 20 (196)
T d1z6ra3 4 DVIQVVIDHNVGAGVIT 20 (196)
T ss_dssp SEEEEEESSSEEEEEEE
T ss_pred eEEEEEECCCeEEEEEE
Confidence 34556677777777664
No 6
>d1x63a2 g.39.1.3 (A:45-76) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.91 E-value=64 Score=15.61 Aligned_cols=12 Identities=25% Similarity=0.664 Sum_probs=7.6
Q ss_pred ceecchhhHhhH
Q psy6072 68 ATLGVGVYVLAG 79 (107)
Q Consensus 68 ~~IGaGIFv~~g 79 (107)
.+||+|-|+--|
T Consensus 7 q~igsgsffpkg 18 (32)
T d1x63a2 7 QVIGTGSFFPKG 18 (32)
T ss_dssp CCCTTSCEEEET
T ss_pred hhcccccccCCC
Confidence 467888776433
No 7
>d1a87a_ f.1.1.1 (A:) Colicin N {Escherichia coli [TaxId: 562]}
Probab=3.34 E-value=2.3e+02 Score=20.22 Aligned_cols=21 Identities=10% Similarity=-0.089 Sum_probs=9.4
Q ss_pred hChHHHHHHHHHHHHHHHHhc
Q psy6072 86 AGPSVVISFAIAAVTSLFSVQ 106 (107)
Q Consensus 86 aGp~~lla~liagl~~ll~Al 106 (107)
+.|..++++....++++++++
T Consensus 259 glpvtilG~agImiva~V~Al 279 (297)
T d1a87a_ 259 GLAVTALGVIGIMTISYLSSF 279 (297)
T ss_dssp TCCHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHH
Confidence 445544454443333444443
No 8
>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=3.33 E-value=2e+02 Score=17.29 Aligned_cols=10 Identities=40% Similarity=0.654 Sum_probs=7.6
Q ss_pred ceecchhhHh
Q psy6072 68 ATLGVGVYVL 77 (107)
Q Consensus 68 ~~IGaGIFv~ 77 (107)
.+||+||.=+
T Consensus 4 ~VIGaGi~Gl 13 (246)
T d1kifa1 4 VVIGAGVIGL 13 (246)
T ss_dssp EEECCSHHHH
T ss_pred EEECchHHHH
Confidence 4788888765
No 9
>d1xc3a2 c.55.1.10 (A:119-294) Putative fructokinase YhdR {Bacillus subtilis [TaxId: 1423]}
Probab=3.24 E-value=33 Score=21.27 Aligned_cols=16 Identities=25% Similarity=0.559 Sum_probs=9.0
Q ss_pred HHHhhhcceecchhhH
Q psy6072 61 LTMLGVGATLGVGVYV 76 (107)
Q Consensus 61 l~~l~vG~~IGaGIFv 76 (107)
.+.+.+|+=||+|+++
T Consensus 5 ~~~l~lGtGiG~gii~ 20 (176)
T d1xc3a2 5 CLYITIGTGIGAGAIV 20 (176)
T ss_dssp EEEEEESSSEEEEEEE
T ss_pred EEEEEEccCeEEEEEE
Confidence 3445566666666654
No 10
>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.08 E-value=1.5e+02 Score=17.89 Aligned_cols=6 Identities=50% Similarity=0.988 Sum_probs=0.0
Q ss_pred eecchh
Q psy6072 69 TLGVGV 74 (107)
Q Consensus 69 ~IGaGI 74 (107)
+||+|+
T Consensus 10 VIGaG~ 15 (449)
T d2dw4a2 10 IIGSGV 15 (449)
T ss_dssp EECCBH
T ss_pred EECCCH
Done!