RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6072
         (107 letters)



>d2zjrm1 b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 108

 Score = 27.4 bits (61), Expect = 0.21
 Identities = 14/47 (29%), Positives = 21/47 (44%)

Query: 60  DLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQ 106
            L     G T+ V   V  G+  R+QA   VVI+   +     F+V+
Sbjct: 22  QLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVR 68


>d2gycn1 b.34.5.6 (N:1-114) Ribosomal protein L19 {Escherichia coli
           [TaxId: 562]}
          Length = 114

 Score = 26.3 bits (58), Expect = 0.48
 Identities = 17/47 (36%), Positives = 25/47 (53%)

Query: 60  DLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQ 106
           D+     G T+ V V+V+ GS  R QA   VVI+     + S F+V+
Sbjct: 15  DVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVR 61


>d2fb1a1 a.4.5.68 (A:150-225) Hypothetical protein BT0354,
          C-terminal domain {Bacteroides thetaiotaomicron [TaxId:
          818]}
          Length = 76

 Score = 24.2 bits (53), Expect = 1.8
 Identities = 7/17 (41%), Positives = 14/17 (82%)

Query: 1  MSRLRNLYEALSRKKID 17
          +S+L++LYEA+  + +D
Sbjct: 13 LSQLQSLYEAIYGEPMD 29


>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast
           (Candida tropicalis) [TaxId: 5482]}
          Length = 189

 Score = 23.8 bits (50), Expect = 4.8
 Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 3/44 (6%)

Query: 67  GATLGVG---VYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQL 107
           GAT+ V     Y++     +   G    I     +    ++ Q+
Sbjct: 6   GATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQI 49


>d1ykwa1 c.1.14.1 (A:146-428) Ribulose 1,5-bisphosphate
           carboxylase-oxygenase {Chlorobium tepidum [TaxId: 1097]}
          Length = 283

 Score = 24.0 bits (52), Expect = 5.1
 Identities = 10/42 (23%), Positives = 16/42 (38%)

Query: 45  SASDAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQA 86
           SA     +   +G VD   +      G  +   AG+ +  QA
Sbjct: 216 SALTLQTVYEKVGNVDFGFVPGRGVFGHPMGPKAGAKSIRQA 257


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.134    0.361 

Gapped
Lambda     K      H
   0.267   0.0637    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 350,937
Number of extensions: 14269
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 12
Length of query: 107
Length of database: 2,407,596
Length adjustment: 67
Effective length of query: 40
Effective length of database: 1,487,686
Effective search space: 59507440
Effective search space used: 59507440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.1 bits)