BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6076
(188 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NDL|A Chain A, The Awd Nucleotide Diphosphate Kinase From Drosophila
pdb|1NDL|B Chain B, The Awd Nucleotide Diphosphate Kinase From Drosophila
pdb|1NDL|C Chain C, The Awd Nucleotide Diphosphate Kinase From Drosophila
Length = 153
Score = 175 bits (444), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 78/107 (72%), Positives = 91/107 (85%)
Query: 20 SPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPF 79
+ NKERTFIM+KPDGVQRGLVGKI++RFE+KGFKL+A+KF A +LL HYA L +PF
Sbjct: 2 AANKERTFIMVKPDGVQRGLVGKIIERFEQKGFKLVALKFTWASKELLEKHYADLSARPF 61
Query: 80 FESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
F L+ YM+SGPVVPMVWEGLNV+K GR MLGATNPAD +PGTIRGD
Sbjct: 62 FPGLVNYMNSGPVVPMVWEGLNVVKTGRQMLGATNPADSLPGTIRGD 108
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 40/44 (90%)
Query: 144 SPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
+ NKERTFIM+KPDGVQRGLVGKI++RFE+KGFKL+A+KF A
Sbjct: 2 AANKERTFIMVKPDGVQRGLVGKIIERFEQKGFKLVALKFTWAS 45
>pdb|1NSQ|A Chain A, Mechanism Of Phosphate Transfer By Nucleoside Diphosphate
Kinase: X- Ray Structures Of A Phospho-Histidine
Intermediate Of The Enzymes From Drosophila And
Dictyostelium
pdb|1NSQ|B Chain B, Mechanism Of Phosphate Transfer By Nucleoside Diphosphate
Kinase: X- Ray Structures Of A Phospho-Histidine
Intermediate Of The Enzymes From Drosophila And
Dictyostelium
pdb|1NSQ|C Chain C, Mechanism Of Phosphate Transfer By Nucleoside Diphosphate
Kinase: X- Ray Structures Of A Phospho-Histidine
Intermediate Of The Enzymes From Drosophila And
Dictyostelium
Length = 153
Score = 175 bits (444), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 78/107 (72%), Positives = 91/107 (85%)
Query: 20 SPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPF 79
+ NKERTFIM+KPDGVQRGLVGKI++RFE+KGFKL+A+KF A +LL HYA L +PF
Sbjct: 2 AANKERTFIMVKPDGVQRGLVGKIIERFEQKGFKLVALKFTWASKELLEKHYADLSARPF 61
Query: 80 FESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
F L+ YM+SGPVVPMVWEGLNV+K GR MLGATNPAD +PGTIRGD
Sbjct: 62 FPGLVNYMNSGPVVPMVWEGLNVVKTGRQMLGATNPADSLPGTIRGD 108
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 40/44 (90%)
Query: 144 SPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
+ NKERTFIM+KPDGVQRGLVGKI++RFE+KGFKL+A+KF A
Sbjct: 2 AANKERTFIMVKPDGVQRGLVGKIIERFEQKGFKLVALKFTWAS 45
>pdb|1BHN|A Chain A, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
pdb|1BHN|B Chain B, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
pdb|1BHN|C Chain C, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
pdb|1BHN|D Chain D, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
pdb|1BHN|E Chain E, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
pdb|1BHN|F Chain F, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
Length = 152
Score = 168 bits (425), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 75/105 (71%), Positives = 89/105 (84%)
Query: 22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
N ERTFI IKPDGVQRGL+G+I++RFE+KGF+L+AMKF++A + LL+ HY LKD+PFF
Sbjct: 3 NSERTFIAIKPDGVQRGLIGEIIKRFEQKGFRLVAMKFMRASEDLLKEHYIDLKDRPFFA 62
Query: 82 SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
L+KYM SGPVV MVWEGLNV+K GR MLG TNPAD PGTIRGD
Sbjct: 63 GLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGD 107
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 40/43 (93%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
N ERTFI IKPDGVQRGL+G+I++RFE+KGF+L+AMKF++A +
Sbjct: 3 NSERTFIAIKPDGVQRGLIGEIIKRFEQKGFRLVAMKFMRASE 45
>pdb|1BE4|A Chain A, Nucleoside Diphosphate Kinase Isoform B From Bovine Retina
pdb|1BE4|B Chain B, Nucleoside Diphosphate Kinase Isoform B From Bovine Retina
pdb|1BE4|C Chain C, Nucleoside Diphosphate Kinase Isoform B From Bovine Retina
Length = 151
Score = 167 bits (422), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 75/105 (71%), Positives = 89/105 (84%)
Query: 22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
N ERTFI IKPDGVQRGL+G+I++RFE+KGF+L+AMKF++A + LL+ HY LKD+PFF
Sbjct: 2 NSERTFIAIKPDGVQRGLMGEIIKRFEQKGFRLVAMKFMRASEDLLKEHYIDLKDRPFFA 61
Query: 82 SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
L+KYM SGPVV MVWEGLNV+K GR MLG TNPAD PGTIRGD
Sbjct: 62 GLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGD 106
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 40/43 (93%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
N ERTFI IKPDGVQRGL+G+I++RFE+KGF+L+AMKF++A +
Sbjct: 2 NSERTFIAIKPDGVQRGLMGEIIKRFEQKGFRLVAMKFMRASE 44
>pdb|1JXV|A Chain A, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|1JXV|B Chain B, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|1JXV|C Chain C, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|1JXV|D Chain D, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|1JXV|E Chain E, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|1JXV|F Chain F, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|2HVD|A Chain A, Human Nucleoside Diphosphate Kinase A Complexed With Adp
pdb|2HVD|B Chain B, Human Nucleoside Diphosphate Kinase A Complexed With Adp
pdb|2HVD|C Chain C, Human Nucleoside Diphosphate Kinase A Complexed With Adp
Length = 152
Score = 166 bits (420), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 75/105 (71%), Positives = 88/105 (83%)
Query: 22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+ +KF+QA + LL+ HY LKD+PFF
Sbjct: 3 NCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFA 62
Query: 82 SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
L+KYM SGPVV MVWEGLNV+K GR MLG TNPAD PGTIRGD
Sbjct: 63 GLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGD 107
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 39/43 (90%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+ +KF+QA +
Sbjct: 3 NCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASE 45
>pdb|2HVE|A Chain A, S120g Mutant Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp
pdb|2HVE|B Chain B, S120g Mutant Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp
pdb|2HVE|C Chain C, S120g Mutant Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp
Length = 152
Score = 166 bits (420), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 75/105 (71%), Positives = 88/105 (83%)
Query: 22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+ +KF+QA + LL+ HY LKD+PFF
Sbjct: 3 NCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFA 62
Query: 82 SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
L+KYM SGPVV MVWEGLNV+K GR MLG TNPAD PGTIRGD
Sbjct: 63 GLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGD 107
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 39/43 (90%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+ +KF+QA +
Sbjct: 3 NCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASE 45
>pdb|3L7U|A Chain A, Crystal Structure Of Human Nm23-H1
pdb|3L7U|B Chain B, Crystal Structure Of Human Nm23-H1
pdb|3L7U|C Chain C, Crystal Structure Of Human Nm23-H1
Length = 172
Score = 166 bits (419), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 75/105 (71%), Positives = 88/105 (83%)
Query: 22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+ +KF+QA + LL+ HY LKD+PFF
Sbjct: 23 NCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFA 82
Query: 82 SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
L+KYM SGPVV MVWEGLNV+K GR MLG TNPAD PGTIRGD
Sbjct: 83 GLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGD 127
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 39/43 (90%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+ +KF+QA +
Sbjct: 23 NCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASE 65
>pdb|1NSK|R Chain R, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
pdb|1NSK|L Chain L, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
pdb|1NSK|T Chain T, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
pdb|1NSK|U Chain U, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
pdb|1NSK|N Chain N, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
pdb|1NSK|O Chain O, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
Length = 152
Score = 166 bits (419), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 75/105 (71%), Positives = 90/105 (85%)
Query: 22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+AMKF++A ++ L+ HY LKD+PFF
Sbjct: 3 NLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFP 62
Query: 82 SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
L+KYM+SGPVV MVWEGLNV+K GR MLG TNPAD PGTIRGD
Sbjct: 63 GLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGD 107
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+AMKF++A +
Sbjct: 3 NLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASE 45
>pdb|1NUE|A Chain A, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|1NUE|B Chain B, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|1NUE|C Chain C, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|1NUE|D Chain D, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|1NUE|E Chain E, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|1NUE|F Chain F, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|3BBB|A Chain A, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBB|B Chain B, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBB|C Chain C, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBB|D Chain D, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBB|E Chain E, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBB|F Chain F, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBF|A Chain A, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
pdb|3BBF|B Chain B, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
pdb|3BBF|C Chain C, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
pdb|3BBF|D Chain D, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
pdb|3BBF|E Chain E, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
pdb|3BBF|F Chain F, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
Length = 151
Score = 165 bits (418), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 75/105 (71%), Positives = 90/105 (85%)
Query: 22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+AMKF++A ++ L+ HY LKD+PFF
Sbjct: 2 NLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFP 61
Query: 82 SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
L+KYM+SGPVV MVWEGLNV+K GR MLG TNPAD PGTIRGD
Sbjct: 62 GLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGD 106
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+AMKF++A +
Sbjct: 2 NLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASE 44
>pdb|1UCN|A Chain A, X-Ray Structure Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp At 2 A Resolution
pdb|1UCN|B Chain B, X-Ray Structure Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp At 2 A Resolution
pdb|1UCN|C Chain C, X-Ray Structure Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp At 2 A Resolution
Length = 152
Score = 164 bits (416), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 74/105 (70%), Positives = 88/105 (83%)
Query: 22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+ +KF+QA + LL+ HY LKD+P+F
Sbjct: 3 NCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPWFA 62
Query: 82 SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
L+KYM SGPVV MVWEGLNV+K GR MLG TNPAD PGTIRGD
Sbjct: 63 GLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGD 107
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 39/43 (90%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+ +KF+QA +
Sbjct: 3 NCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASE 45
>pdb|3BBC|A Chain A, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
pdb|3BBC|B Chain B, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
pdb|3BBC|C Chain C, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
pdb|3BBC|D Chain D, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
pdb|3BBC|E Chain E, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
pdb|3BBC|F Chain F, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
Length = 151
Score = 162 bits (411), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 74/105 (70%), Positives = 89/105 (84%)
Query: 22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+AMKF++A ++ L+ HY LKD+PFF
Sbjct: 2 NLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFP 61
Query: 82 SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
L+KYM+SGPVV MVWEGLNV+K G MLG TNPAD PGTIRGD
Sbjct: 62 GLVKYMNSGPVVAMVWEGLNVVKTGAVMLGETNPADSKPGTIRGD 106
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+AMKF++A +
Sbjct: 2 NLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASE 44
>pdb|1ZS6|A Chain A, Structure Of Human Nucleoside-diphosphate Kinase 3
pdb|1ZS6|B Chain B, Structure Of Human Nucleoside-diphosphate Kinase 3
pdb|1ZS6|D Chain D, Structure Of Human Nucleoside-diphosphate Kinase 3
Length = 169
Score = 158 bits (400), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 69/110 (62%), Positives = 91/110 (82%)
Query: 17 ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKD 76
A + ERTF+ +KPDGVQR LVG+IV+RFE KGFKL+A+K VQA ++LLR HYA L++
Sbjct: 15 AACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRE 74
Query: 77 KPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
+PF+ L+KYM+SGPVV MVW+GL+V++ R+++GATNPAD PGTIRGD
Sbjct: 75 RPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGTIRGD 124
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 38/48 (79%)
Query: 141 ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
A + ERTF+ +KPDGVQR LVG+IV+RFE KGFKL+A+K VQA +
Sbjct: 15 AACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASE 62
>pdb|3NGR|A Chain A, Crystal Structure Of Leishmania Nucleoside Diphosphate
Kinase B With Unordered Nucleotide-Binding Loop.
pdb|3NGS|A Chain A, Structure Of Leishmania Nucleoside Diphosphate Kinase B
With Ordered Nucleotide-Binding Loop
pdb|3NGS|B Chain B, Structure Of Leishmania Nucleoside Diphosphate Kinase B
With Ordered Nucleotide-Binding Loop
pdb|3NGS|C Chain C, Structure Of Leishmania Nucleoside Diphosphate Kinase B
With Ordered Nucleotide-Binding Loop
pdb|3NGT|A Chain A, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|B Chain B, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|C Chain C, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|D Chain D, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|E Chain E, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|F Chain F, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|G Chain G, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|H Chain H, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|I Chain I, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|J Chain J, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|K Chain K, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|L Chain L, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|M Chain M, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|N Chain N, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGU|A Chain A, Structure Of Leishmania Ndkb Complexed With Adp.
pdb|3NGU|B Chain B, Structure Of Leishmania Ndkb Complexed With Adp
Length = 151
Score = 147 bits (370), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 67/105 (63%), Positives = 82/105 (78%)
Query: 22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
+ ERTFI +KPDGVQRGLVG+I+ RFE KG+KL+A+K +Q + + HY L KPFF
Sbjct: 2 SSERTFIAVKPDGVQRGLVGEIIARFERKGYKLVALKILQPTTEQAQGHYKDLCSKPFFP 61
Query: 82 SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
+L+KY SSGP+V MVWEG NV+K GR +LGATNPAD PGTIRGD
Sbjct: 62 ALVKYFSSGPIVCMVWEGKNVVKSGRVLLGATNPADSQPGTIRGD 106
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 27/40 (67%), Positives = 35/40 (87%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQ 185
+ ERTFI +KPDGVQRGLVG+I+ RFE KG+KL+A+K +Q
Sbjct: 2 SSERTFIAVKPDGVQRGLVGEIIARFERKGYKLVALKILQ 41
>pdb|4FKX|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Cdp
pdb|4FKX|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Cdp
pdb|4FKX|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Cdp
pdb|4FKY|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Gtp
pdb|4FKY|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Gtp
pdb|4FKY|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Gtp
Length = 161
Score = 145 bits (365), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 63/103 (61%), Positives = 80/103 (77%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
ERTFI +KPDGVQR LVG+I++RFE KG+KL+ +K +Q ++ + HY L KPF+ L
Sbjct: 12 ERTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLLQPTEEQAKQHYIDLASKPFYSGL 71
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
+ Y SSGP+V MVWEGL V+K GR +LGATNPAD +PGTIRGD
Sbjct: 72 VSYFSSGPIVGMVWEGLGVVKGGRVLLGATNPADSLPGTIRGD 114
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 33/38 (86%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQ 185
ERTFI +KPDGVQR LVG+I++RFE KG+KL+ +K +Q
Sbjct: 12 ERTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLLQ 49
>pdb|4F36|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F36|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F36|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F36|D Chain D, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F36|E Chain E, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F36|F Chain F, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F4A|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Udp-Bound Form
pdb|4F4A|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Udp-Bound Form
pdb|4F4A|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Udp-Bound Form
Length = 157
Score = 144 bits (364), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 63/103 (61%), Positives = 80/103 (77%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
ERTFI +KPDGVQR LVG+I++RFE KG+KL+ +K +Q ++ + HY L KPF+ L
Sbjct: 8 ERTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLLQPTEEQAKQHYIDLASKPFYSGL 67
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
+ Y SSGP+V MVWEGL V+K GR +LGATNPAD +PGTIRGD
Sbjct: 68 VSYFSSGPIVGMVWEGLGVVKGGRVLLGATNPADSLPGTIRGD 110
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 33/38 (86%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQ 185
ERTFI +KPDGVQR LVG+I++RFE KG+KL+ +K +Q
Sbjct: 8 ERTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLLQ 45
>pdb|3B54|A Chain A, Saccharomyces Cerevisiae Nucleoside Diphosphate Kinase
pdb|3B54|B Chain B, Saccharomyces Cerevisiae Nucleoside Diphosphate Kinase
Length = 161
Score = 143 bits (360), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 64/107 (59%), Positives = 82/107 (76%)
Query: 20 SPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPF 79
S ERTFI +KPDGVQRGLV +I+ RFE+KG+KL+A+K V+ADDKLL HYA KPF
Sbjct: 10 SSQTERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADDKLLEQHYAEHVGKPF 69
Query: 80 FESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
F ++ +M SGP++ VWEG +V++ GR++LGATNP PGTIRGD
Sbjct: 70 FPKMVSFMKSGPILATVWEGKDVVRQGRTILGATNPLGSAPGTIRGD 116
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/45 (66%), Positives = 38/45 (84%)
Query: 144 SPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
S ERTFI +KPDGVQRGLV +I+ RFE+KG+KL+A+K V+ADD
Sbjct: 10 SSQTERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADD 54
>pdb|1XIQ|A Chain A, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
pdb|1XIQ|B Chain B, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
pdb|1XIQ|C Chain C, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
pdb|1XIQ|D Chain D, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
pdb|1XIQ|E Chain E, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
pdb|1XIQ|F Chain F, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
Length = 157
Score = 143 bits (360), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 65/125 (52%), Positives = 89/125 (71%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
E++FIMIKPDGVQRGLVG I++RFE+KG+KLIA+K + +++L+ HY L D+PFF++L
Sbjct: 10 EKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFFKNL 69
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDXXXXXXXXXXXXXYATA 143
+ Y+S GPVV MVWEG++++K GR ++G TNP GTIRGD + A
Sbjct: 70 VAYISKGPVVAMVWEGVDMVKQGRKLIGETNPLTSNTGTIRGDFCLEVSKNVIHGSDSVA 129
Query: 144 SPNKE 148
S NKE
Sbjct: 130 SANKE 134
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/38 (71%), Positives = 35/38 (92%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQ 185
E++FIMIKPDGVQRGLVG I++RFE+KG+KLIA+K +
Sbjct: 10 EKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLN 47
>pdb|3PRV|A Chain A, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|B Chain B, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|C Chain C, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|D Chain D, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|E Chain E, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|F Chain F, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
Length = 157
Score = 142 bits (358), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 64/105 (60%), Positives = 81/105 (77%)
Query: 22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
ERTFI +KPDGVQR LVG+I+QRFE+KG+KL+A+K +Q + + HY L KPF++
Sbjct: 8 TSERTFIAVKPDGVQRCLVGEIIQRFEKKGYKLVALKMLQPSAEQAQQHYIDLASKPFYK 67
Query: 82 SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
L+ Y SSGP+V MVWEG V+K GR +LGATNPAD +PGTIRGD
Sbjct: 68 DLVAYFSSGPIVGMVWEGKGVVKGGRVLLGATNPADSLPGTIRGD 112
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/40 (67%), Positives = 35/40 (87%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQ 185
ERTFI +KPDGVQR LVG+I+QRFE+KG+KL+A+K +Q
Sbjct: 8 TSERTFIAVKPDGVQRCLVGEIIQRFEKKGYKLVALKMLQ 47
>pdb|1EHW|A Chain A, Human Nucleoside Diphosphate Kinase 4
pdb|1EHW|B Chain B, Human Nucleoside Diphosphate Kinase 4
Length = 162
Score = 142 bits (357), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 60/105 (57%), Positives = 80/105 (76%)
Query: 22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
+ERT + +KPDGVQR LVG ++QRFE +GF L+ MK +QA + +L HY L+ KPF+
Sbjct: 23 TRERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYP 82
Query: 82 SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
+LI+YMSSGPVV MVWEG NV++ R+M+G T+ A+ PGTIRGD
Sbjct: 83 ALIRYMSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAAPGTIRGD 127
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 33/43 (76%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
+ERT + +KPDGVQR LVG ++QRFE +GF L+ MK +QA +
Sbjct: 23 TRERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPE 65
>pdb|3R9L|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Giardia Lamblia Featuring A Disordered Dinucleotide
Binding Site
Length = 155
Score = 140 bits (354), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 61/104 (58%), Positives = 77/104 (74%)
Query: 23 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFES 82
+ERTF+M+KPDGVQRGLVG+I+ RFE +GFKL+AMKF L+ HY +PFF
Sbjct: 7 RERTFLMVKPDGVQRGLVGEIISRFERRGFKLVAMKFFVPSKNLVEEHYKEHAARPFFAG 66
Query: 83 LIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
L K++SSGPV MVWEG NV+ + R+M+G T PA+ PGTIRGD
Sbjct: 67 LCKFLSSGPVCAMVWEGANVVSISRTMMGVTKPAESAPGTIRGD 110
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 28/37 (75%), Positives = 35/37 (94%)
Query: 147 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKF 183
+ERTF+M+KPDGVQRGLVG+I+ RFE +GFKL+AMKF
Sbjct: 7 RERTFLMVKPDGVQRGLVGEIISRFERRGFKLVAMKF 43
>pdb|2ZUA|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Haloarcula Quadrata
pdb|2ZUA|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Haloarcula Quadrata
pdb|2ZUA|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase From
Haloarcula Quadrata
pdb|2ZUA|D Chain D, Crystal Structure Of Nucleoside Diphosphate Kinase From
Haloarcula Quadrata
Length = 174
Score = 137 bits (344), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 57/105 (54%), Positives = 78/105 (74%)
Query: 22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
ERTF+M+KPDGVQRGL+G IV RFE++G K++ KF+Q D +L HY +DKPFF+
Sbjct: 23 EHERTFVMVKPDGVQRGLIGDIVSRFEDRGLKMVGGKFMQIDQELAEEHYGEHEDKPFFD 82
Query: 82 SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
L+ +++SGPV MVWEG + + R+M+G T+PA+ PGTIRGD
Sbjct: 83 GLVDFITSGPVFAMVWEGQDATRQVRTMMGETDPAESAPGTIRGD 127
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 34/42 (80%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
ERTF+M+KPDGVQRGL+G IV RFE++G K++ KF+Q D
Sbjct: 23 EHERTFVMVKPDGVQRGLIGDIVSRFEDRGLKMVGGKFMQID 64
>pdb|2AZ3|A Chain A, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|B Chain B, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|C Chain C, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|D Chain D, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|E Chain E, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|F Chain F, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|G Chain G, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|H Chain H, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|I Chain I, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
Length = 164
Score = 134 bits (337), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 56/107 (52%), Positives = 78/107 (72%)
Query: 20 SPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPF 79
+ + ERTF+M+KPDGVQRGL+G IV R E KG K++ KF++ D++L HYA +DKPF
Sbjct: 5 TDHDERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPF 64
Query: 80 FESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
F+ L+ +++SGPV MVWEG + + R ++GAT+ D PGTIRGD
Sbjct: 65 FDGLVSFITSGPVFAMVWEGADATRQVRQLMGATDAQDAAPGTIRGD 111
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 35/45 (77%)
Query: 144 SPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
+ + ERTF+M+KPDGVQRGL+G IV R E KG K++ KF++ D+
Sbjct: 5 TDHDERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDE 49
>pdb|1PKU|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|D Chain D, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|E Chain E, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|F Chain F, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|G Chain G, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|H Chain H, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|I Chain I, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|J Chain J, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|K Chain K, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|L Chain L, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
Length = 150
Score = 134 bits (336), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 76/103 (73%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
E++FIMIKPDGVQRGL+G I+ RFE+KGF L MKF+ + + HYA L DKPFF L
Sbjct: 3 EQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGL 62
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
++Y+ SGPVV MVWEG +V+ GR ++GAT P + PGTIR D
Sbjct: 63 VEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRAD 105
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 33/40 (82%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
E++FIMIKPDGVQRGL+G I+ RFE+KGF L MKF+ +
Sbjct: 3 EQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVE 42
>pdb|2AZ1|A Chain A, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
pdb|2AZ1|B Chain B, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
pdb|2AZ1|C Chain C, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
pdb|2AZ1|D Chain D, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
pdb|2AZ1|E Chain E, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
pdb|2AZ1|F Chain F, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
Length = 181
Score = 133 bits (335), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 56/107 (52%), Positives = 78/107 (72%)
Query: 20 SPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPF 79
+ + ERTF+M+KPDGVQRGL+G IV R E KG K++ KF++ D++L HYA +DKPF
Sbjct: 22 TDHDERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPF 81
Query: 80 FESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
F+ L+ +++SGPV MVWEG + + R ++GAT+ D PGTIRGD
Sbjct: 82 FDGLVSFITSGPVFAMVWEGADATRQVRQLMGATDAQDAAPGTIRGD 128
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 35/45 (77%)
Query: 144 SPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
+ + ERTF+M+KPDGVQRGL+G IV R E KG K++ KF++ D+
Sbjct: 22 TDHDERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDE 66
>pdb|1WKJ|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8
pdb|1WKJ|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8
pdb|1WKK|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8 In Complex With Gdp
pdb|1WKK|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8 In Complex With Gdp
pdb|1WKL|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8 In Complex With Atp And Adp
pdb|1WKL|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8 In Complex With Atp And Adp
Length = 137
Score = 132 bits (333), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 79/103 (76%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
ERTF+MIKPDGV+RGLVG+I+ RFE KGF++ A+K +Q +L HYA ++KPFF L
Sbjct: 2 ERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPGL 61
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
+++++SGPVV MV EG V+ R M+GAT+P D +PGTIRGD
Sbjct: 62 VRFITSGPVVAMVLEGPGVVAEVRKMMGATHPKDALPGTIRGD 104
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 26/38 (68%), Positives = 34/38 (89%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQ 185
ERTF+MIKPDGV+RGLVG+I+ RFE KGF++ A+K +Q
Sbjct: 2 ERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQ 39
>pdb|1U8W|A Chain A, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
pdb|1U8W|B Chain B, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
pdb|1U8W|C Chain C, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
pdb|1U8W|D Chain D, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
pdb|1U8W|E Chain E, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
pdb|1U8W|F Chain F, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
Length = 149
Score = 129 bits (325), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 58/103 (56%), Positives = 73/103 (70%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
E+TFIMIKPDGVQRGL+G+++ RFE+KGF L +K + + HY L K FF L
Sbjct: 2 EQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGL 61
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
+ Y+ SGPVV M+WEG NV+ GR ++GATNPA PGTIRGD
Sbjct: 62 VDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAASEPGTIRGD 104
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 33/40 (82%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
E+TFIMIKPDGVQRGL+G+++ RFE+KGF L +K + +
Sbjct: 2 EQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVE 41
>pdb|1W7W|A Chain A, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|B Chain B, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|C Chain C, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|D Chain D, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|E Chain E, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|F Chain F, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization
Length = 182
Score = 129 bits (324), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 58/103 (56%), Positives = 74/103 (71%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
ERTFI IKPDGVQRGL+ +I+ RFE KGFKL+ +K + + + HY LK++PFF L
Sbjct: 33 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFFNGL 92
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
++SSGPV+ MVWEG VI GR ++GAT+P PGTIRGD
Sbjct: 93 CDFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSAPGTIRGD 135
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMK 182
ERTFI IKPDGVQRGL+ +I+ RFE KGFKL+ +K
Sbjct: 33 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIK 67
>pdb|1S57|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S57|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S57|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S57|D Chain D, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S57|E Chain E, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S57|F Chain F, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S59|A Chain A, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
pdb|1S59|B Chain B, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
pdb|1S59|C Chain C, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
pdb|1S59|D Chain D, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
pdb|1S59|E Chain E, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
pdb|1S59|F Chain F, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
Length = 153
Score = 127 bits (318), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 57/103 (55%), Positives = 74/103 (71%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
E T+IM+KPDG+QRGLVG+I+ RFE+KGFKLI +K Q +L HY L K FF +L
Sbjct: 6 EETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNL 65
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
I+Y++SGPVV M WEG+ V+ R ++G T+P PGTIRGD
Sbjct: 66 IEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAEPGTIRGD 108
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/38 (68%), Positives = 33/38 (86%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQ 185
E T+IM+KPDG+QRGLVG+I+ RFE+KGFKLI +K Q
Sbjct: 6 EETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQ 43
>pdb|3JS9|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase Family
Protein From Babesia Bovis
pdb|3JS9|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase Family
Protein From Babesia Bovis
pdb|3JS9|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase Family
Protein From Babesia Bovis
Length = 156
Score = 126 bits (316), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 57/103 (55%), Positives = 75/103 (72%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
ERT+IM+KPDGVQRGL+G+I++RFE KG KLIA KF ++ HY KDKPFF+ L
Sbjct: 10 ERTYIMVKPDGVQRGLIGEILKRFEMKGLKLIAAKFEHPTMDVVAQHYCEHKDKPFFKDL 69
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
++S GPV M+WEG IK+GR+++G T+P + GTIRGD
Sbjct: 70 CDFISHGPVFCMIWEGPEAIKIGRNLVGLTSPVESAAGTIRGD 112
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/36 (75%), Positives = 33/36 (91%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKF 183
ERT+IM+KPDGVQRGL+G+I++RFE KG KLIA KF
Sbjct: 10 ERTYIMVKPDGVQRGLIGEILKRFEMKGLKLIAAKF 45
>pdb|2VU5|A Chain A, Crystal Structure Of Pndk From Bacillus Anthracis
Length = 148
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 74/103 (71%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
E+TF+M+KPDGVQR +G+IV RFE+KGF+L+ K +Q ++ HYA ++KPFF L
Sbjct: 2 EKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHEEKPFFGEL 61
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
+ +++SGPV MVW+G V+ R+M+G T P + PGTIRGD
Sbjct: 62 VDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGD 104
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 32/38 (84%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQ 185
E+TF+M+KPDGVQR +G+IV RFE+KGF+L+ K +Q
Sbjct: 2 EKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQ 39
>pdb|1LWX|A Chain A, Azt Diphosphate Binding To Nucleoside Diphosphate Kinase
pdb|1LWX|B Chain B, Azt Diphosphate Binding To Nucleoside Diphosphate Kinase
pdb|1LWX|C Chain C, Azt Diphosphate Binding To Nucleoside Diphosphate Kinase
Length = 155
Score = 122 bits (307), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 56/110 (50%), Positives = 77/110 (70%)
Query: 17 ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKD 76
+T NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K + L +HYA K+
Sbjct: 2 STNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKE 61
Query: 77 KPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
+PFF L+ +++SGPVV MV+EG V+ R M+G TNP PG+IRGD
Sbjct: 62 RPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGD 111
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 34/42 (80%)
Query: 141 ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMK 182
+T NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K
Sbjct: 2 STNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLK 43
>pdb|1HLW|A Chain A, Structure Of The H122a Mutant Of The Nucleoside
Diphosphate Kinase
Length = 155
Score = 122 bits (307), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 56/110 (50%), Positives = 77/110 (70%)
Query: 17 ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKD 76
+T NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K + L +HYA K+
Sbjct: 2 STNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKE 61
Query: 77 KPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
+PFF L+ +++SGPVV MV+EG V+ R M+G TNP PG+IRGD
Sbjct: 62 RPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGD 111
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 34/42 (80%)
Query: 141 ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMK 182
+T NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K
Sbjct: 2 STNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLK 43
>pdb|1B4S|A Chain A, Structure Of Nucleoside Diphosphate Kinase H122g Mutant
pdb|1B4S|B Chain B, Structure Of Nucleoside Diphosphate Kinase H122g Mutant
pdb|1B4S|C Chain C, Structure Of Nucleoside Diphosphate Kinase H122g Mutant
pdb|1F3F|A Chain A, Structure Of The H122g Nucleoside Diphosphate Kinase D4T-
Triphosphate.Mg Complex
pdb|1F3F|B Chain B, Structure Of The H122g Nucleoside Diphosphate Kinase D4T-
Triphosphate.Mg Complex
pdb|1F3F|C Chain C, Structure Of The H122g Nucleoside Diphosphate Kinase D4T-
Triphosphate.Mg Complex
pdb|1MN9|A Chain A, Ndp Kinase Mutant (H122g) Complex With Rtp
pdb|1MN9|B Chain B, Ndp Kinase Mutant (H122g) Complex With Rtp
pdb|1MN9|C Chain C, Ndp Kinase Mutant (H122g) Complex With Rtp
pdb|3FKB|A Chain A, Structure Of Ndpk H122g And Tenofovir-Diphosphate
pdb|3FKB|B Chain B, Structure Of Ndpk H122g And Tenofovir-Diphosphate
pdb|3FKB|C Chain C, Structure Of Ndpk H122g And Tenofovir-Diphosphate
pdb|3FKB|D Chain D, Structure Of Ndpk H122g And Tenofovir-Diphosphate
pdb|3FKB|E Chain E, Structure Of Ndpk H122g And Tenofovir-Diphosphate
pdb|3FKB|F Chain F, Structure Of Ndpk H122g And Tenofovir-Diphosphate
Length = 155
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 56/110 (50%), Positives = 77/110 (70%)
Query: 17 ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKD 76
+T NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K + L +HYA K+
Sbjct: 2 STNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKE 61
Query: 77 KPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
+PFF L+ +++SGPVV MV+EG V+ R M+G TNP PG+IRGD
Sbjct: 62 RPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGD 111
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 34/42 (80%)
Query: 141 ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMK 182
+T NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K
Sbjct: 2 STNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLK 43
>pdb|1NPK|A Chain A, Refined X-Ray Structure Of Dictyostelium Nucleoside
Diphosphate Kinase At 1,8 Angstroms Resolution
Length = 154
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 56/110 (50%), Positives = 77/110 (70%)
Query: 17 ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKD 76
+T NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K + L +HYA K+
Sbjct: 1 STNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKE 60
Query: 77 KPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
+PFF L+ +++SGPVV MV+EG V+ R M+G TNP PG+IRGD
Sbjct: 61 RPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGD 110
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 34/42 (80%)
Query: 141 ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMK 182
+T NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K
Sbjct: 1 STNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLK 42
>pdb|1NDP|A Chain A, Adenosine 5'-Diphosphate Binding And The Active Site Of
Nucleoside Diphosphate Kinase
pdb|1NDP|B Chain B, Adenosine 5'-Diphosphate Binding And The Active Site Of
Nucleoside Diphosphate Kinase
pdb|1KDN|A Chain A, Structure Of Nucleoside Diphosphate Kinase
pdb|1KDN|B Chain B, Structure Of Nucleoside Diphosphate Kinase
pdb|1KDN|C Chain C, Structure Of Nucleoside Diphosphate Kinase
pdb|2BEF|A Chain A, Crystal Structure Of Ndp Kinase Complexed With Mg, Adp,
And Bef3
pdb|2BEF|B Chain B, Crystal Structure Of Ndp Kinase Complexed With Mg, Adp,
And Bef3
pdb|2BEF|C Chain C, Crystal Structure Of Ndp Kinase Complexed With Mg, Adp,
And Bef3
pdb|1BUX|A Chain A, 3'-Phosphorylated Nucleotides Binding To Nucleoside
Diphosphate Kinase
pdb|1BUX|B Chain B, 3'-Phosphorylated Nucleotides Binding To Nucleoside
Diphosphate Kinase
pdb|1BUX|C Chain C, 3'-Phosphorylated Nucleotides Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|A Chain A, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|B Chain B, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|C Chain C, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|D Chain D, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|E Chain E, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|F Chain F, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1F6T|A Chain A, Structure Of The Nucleoside Diphosphate
Kinase/alpha-borano(rp)-tdp.mg Complex
pdb|1F6T|B Chain B, Structure Of The Nucleoside Diphosphate
Kinase/alpha-borano(rp)-tdp.mg Complex
pdb|1F6T|C Chain C, Structure Of The Nucleoside Diphosphate
Kinase/alpha-borano(rp)-tdp.mg Complex
pdb|1HIY|A Chain A, Binding Of Nucleotides To Ndp Kinase
pdb|1HIY|B Chain B, Binding Of Nucleotides To Ndp Kinase
pdb|1HIY|C Chain C, Binding Of Nucleotides To Ndp Kinase
pdb|1S5Z|A Chain A, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1S5Z|B Chain B, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1S5Z|C Chain C, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1S5Z|D Chain D, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1S5Z|E Chain E, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1S5Z|F Chain F, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1NDC|A Chain A, X-Ray Structure Of Nucleoside Diphosphate Kinase Complexed
With Dtdp And Mg2+ At 2 A Resolution
Length = 155
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 56/110 (50%), Positives = 77/110 (70%)
Query: 17 ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKD 76
+T NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K + L +HYA K+
Sbjct: 2 STNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKE 61
Query: 77 KPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
+PFF L+ +++SGPVV MV+EG V+ R M+G TNP PG+IRGD
Sbjct: 62 RPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGD 111
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 34/42 (80%)
Query: 141 ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMK 182
+T NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K
Sbjct: 2 STNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLK 43
>pdb|1NSP|A Chain A, Mechanism Of Phosphate Transfer By Nucleoside Diphosphate
Kinase: X- Ray Structures Of A Phospho-Histidine
Intermediate Of The Enzymes From Drosophila And
Dictyostelium
Length = 155
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 56/110 (50%), Positives = 77/110 (70%)
Query: 17 ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKD 76
+T NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K + L +HYA K+
Sbjct: 2 STNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKE 61
Query: 77 KPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
+PFF L+ +++SGPVV MV+EG V+ R M+G TNP PG+IRGD
Sbjct: 62 RPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGD 111
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 34/42 (80%)
Query: 141 ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMK 182
+T NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K
Sbjct: 2 STNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLK 43
>pdb|1NDK|A Chain A, X-Ray Structure Of Nucleoside Diphosphate Kinase
Length = 155
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 56/110 (50%), Positives = 77/110 (70%)
Query: 17 ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKD 76
+T NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K + L +HYA K+
Sbjct: 2 STNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKE 61
Query: 77 KPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
+PFF L+ +++SGPVV MV+EG V+ R M+G TNP PG+IRGD
Sbjct: 62 RPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGD 111
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 34/42 (80%)
Query: 141 ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMK 182
+T NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K
Sbjct: 2 STNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLK 43
>pdb|1MN7|A Chain A, Ndp Kinase Mutant (H122g;n119s;f64w) In Complex With
Abazttp
pdb|1MN7|B Chain B, Ndp Kinase Mutant (H122g;n119s;f64w) In Complex With
Abazttp
Length = 155
Score = 120 bits (302), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 55/110 (50%), Positives = 77/110 (70%)
Query: 17 ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKD 76
+T NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K + L +HYA K+
Sbjct: 2 STNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKE 61
Query: 77 KPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
+P+F L+ +++SGPVV MV+EG V+ R M+G TNP PG+IRGD
Sbjct: 62 RPWFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGD 111
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 34/42 (80%)
Query: 141 ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMK 182
+T NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K
Sbjct: 2 STNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLK 43
>pdb|1HHQ|A Chain A, Role Of Active Site Resiude Lys16 In Nucleoside
Diphosphate Kinase
Length = 155
Score = 120 bits (302), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 55/110 (50%), Positives = 76/110 (69%)
Query: 17 ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKD 76
+T NKERTF+ + PDGV RGLVG+I+ R+E+KGF L+ +K + L +HYA K+
Sbjct: 2 STNKVNKERTFLAVAPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKE 61
Query: 77 KPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
+PFF L+ +++SGPVV MV+EG V+ R M+G TNP PG+IRGD
Sbjct: 62 RPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGD 111
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 33/42 (78%)
Query: 141 ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMK 182
+T NKERTF+ + PDGV RGLVG+I+ R+E+KGF L+ +K
Sbjct: 2 STNKVNKERTFLAVAPDGVARGLVGEIIARYEKKGFVLVGLK 43
>pdb|2CWK|A Chain A, Crystal Structure Of Nucleotide Diphosphate Kinase From
Pyrococcus Horikoshii
pdb|2CWK|B Chain B, Crystal Structure Of Nucleotide Diphosphate Kinase From
Pyrococcus Horikoshii
pdb|2DXD|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Atp Analog
pdb|2DXD|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Atp Analog
pdb|2DXE|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Gdp
pdb|2DXE|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Gdp
pdb|2DXF|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Gtp Analog
pdb|2DXF|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Gtp Analog
pdb|2DY9|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Adp
pdb|2DY9|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Adp
pdb|2DYA|A Chain A, Crystal Structure Of Complex Between Adenine Nucleotide
And Nucleoside Diphosphate Kinase
pdb|2DYA|B Chain B, Crystal Structure Of Complex Between Adenine Nucleotide
And Nucleoside Diphosphate Kinase
Length = 160
Score = 119 bits (298), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 54/103 (52%), Positives = 73/103 (70%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
ERT ++IKPD V RGL+G+I+ RFE+KG K++ MK + D +L HY ++KPFF++L
Sbjct: 8 ERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKAL 67
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
I Y++ PVV MV EG ++V R M GAT+P D PGTIRGD
Sbjct: 68 IDYITKTPVVVMVLEGRYAVEVVRKMAGATDPKDAAPGTIRGD 110
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 31/40 (77%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
ERT ++IKPD V RGL+G+I+ RFE+KG K++ MK + D
Sbjct: 8 ERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWID 47
>pdb|1LEO|A Chain A, P100s Nucleoside Diphosphate Kinase
Length = 150
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 74/105 (70%)
Query: 22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K + L +HYA K++PFF
Sbjct: 2 NKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFG 61
Query: 82 SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
L+ +++SGPVV MV+EG V+ R M+G TN PG+IRGD
Sbjct: 62 GLVSFITSGPVVAMVFEGKGVVASARLMIGVTNSLASAPGSIRGD 106
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 32/37 (86%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMK 182
NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K
Sbjct: 2 NKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLK 38
>pdb|1NCL|A Chain A, Thermal Stability Of Hexameric And Tetrameric Nucleoside,
Diphosphate Kinases
Length = 150
Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 74/105 (70%)
Query: 22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K + L +HYA K++PFF
Sbjct: 2 NKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFG 61
Query: 82 SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
L+ +++SGPVV MV+EG V+ R M+G TNP G+IRGD
Sbjct: 62 GLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAGGSIRGD 106
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 32/37 (86%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMK 182
NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K
Sbjct: 2 NKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLK 38
>pdb|1PAE|X Chain X, Nucleoside Diphosphate Kinase
Length = 155
Score = 117 bits (294), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 75/110 (68%)
Query: 17 ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKD 76
+T NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K + L +HYA K+
Sbjct: 2 STNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKE 61
Query: 77 KPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
+PFF L+ +++SGPVV V+EG V+ R +G TNP PG+IRGD
Sbjct: 62 RPFFGGLVSFITSGPVVAXVFEGKGVVASARLXIGVTNPLASAPGSIRGD 111
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 34/42 (80%)
Query: 141 ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMK 182
+T NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K
Sbjct: 2 STNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLK 43
>pdb|3Q83|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q83|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q83|C Chain C, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q83|D Chain D, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q83|E Chain E, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q83|F Chain F, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q86|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Gtp
pdb|3Q86|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Gtp
pdb|3Q89|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|C Chain C, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|D Chain D, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|E Chain E, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|F Chain F, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|G Chain G, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|H Chain H, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q8U|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8U|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8U|C Chain C, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8U|D Chain D, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8U|E Chain E, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8U|F Chain F, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8V|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|C Chain C, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|D Chain D, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|E Chain E, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|F Chain F, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|G Chain G, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|H Chain H, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8Y|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|C Chain C, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|D Chain D, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|E Chain E, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|F Chain F, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|G Chain G, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|H Chain H, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
Length = 157
Score = 116 bits (290), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 71/103 (68%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
ERTF+MIKPD VQR L+G+++ R E KG KL+ K +Q +L THY + KPF+ L
Sbjct: 2 ERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDL 61
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
I +++S PV MV EG + + V R ++G+TNP++ PG+IRGD
Sbjct: 62 ISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGD 104
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 29/38 (76%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQ 185
ERTF+MIKPD VQR L+G+++ R E KG KL+ K +Q
Sbjct: 2 ERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQ 39
>pdb|1NB2|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Bacillus Halodenitrificans
Length = 150
Score = 114 bits (286), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 69/104 (66%)
Query: 23 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFES 82
KERTF+M+KPDGVQR LVG++V+RFE KG KL K + HYA L PFF
Sbjct: 2 KERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGG 61
Query: 83 LIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
L+ +SGPV MVWEGLN R +LGATNP+D PGTIRGD
Sbjct: 62 LVGGATSGPVFAMVWEGLNAAATARQILGATNPSDAAPGTIRGD 105
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 147 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFV 184
KERTF+M+KPDGVQR LVG++V+RFE KG KL K +
Sbjct: 2 KERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLM 39
>pdb|3MPD|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Encephalitozoon Cuniculi, Cubic Form, Apo
pdb|3MPD|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Encephalitozoon Cuniculi, Cubic Form, Apo
Length = 151
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 69/103 (66%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
ERTFIMIKPD ++R L+ +I+QRFEEKG L A K V ++L THY+ L PFF +
Sbjct: 6 ERTFIMIKPDAIKRRLISRIIQRFEEKGLYLAASKCVIPKREVLETHYSHLSSMPFFSEM 65
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
++ M SG V+ MVW G + + +GR ++G TNP GTIRGD
Sbjct: 66 VEDMMSGMVLAMVWVGKDAVSIGRKLIGETNPQAASVGTIRGD 108
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 29/37 (78%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFV 184
ERTFIMIKPD ++R L+ +I+QRFEEKG L A K V
Sbjct: 6 ERTFIMIKPDAIKRRLISRIIQRFEEKGLYLAASKCV 42
>pdb|2NCK|R Chain R, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
pdb|2NCK|L Chain L, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
pdb|1NLK|R Chain R, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
pdb|1NLK|L Chain L, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
pdb|1NHK|R Chain R, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
pdb|1NHK|L Chain L, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
Length = 144
Score = 108 bits (271), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 68/103 (66%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
ERT +IKPDG+++G++GKI+ RFEEKG K +A++ YA K +PFF+ L
Sbjct: 3 ERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKDL 62
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
+++M SGPVV MV EG N + R ++GATNPA GTIR D
Sbjct: 63 VQFMISGPVVLMVLEGENAVLANRDIMGATNPAQAAEGTIRKD 105
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 30/36 (83%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKF 183
ERT +IKPDG+++G++GKI+ RFEEKG K +A++
Sbjct: 3 ERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRL 38
>pdb|2HUR|A Chain A, Escherichia Coli Nucleoside Diphosphate Kinase
pdb|2HUR|B Chain B, Escherichia Coli Nucleoside Diphosphate Kinase
pdb|2HUR|C Chain C, Escherichia Coli Nucleoside Diphosphate Kinase
pdb|2HUR|D Chain D, Escherichia Coli Nucleoside Diphosphate Kinase
pdb|2HUR|E Chain E, Escherichia Coli Nucleoside Diphosphate Kinase
pdb|2HUR|F Chain F, Escherichia Coli Nucleoside Diphosphate Kinase
Length = 142
Score = 103 bits (257), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 67/103 (65%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
ERTF +IKP+ V + ++G I RFE GFK++ K + + R YA KPFF+ L
Sbjct: 3 ERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGL 62
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
+++M+SGP+V V EG N ++ R +LGATNPA+ + GT+R D
Sbjct: 63 VEFMTSGPIVVSVLEGENAVQRHRDLLGATNPANALAGTLRAD 105
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQ 185
ERTF +IKP+ V + ++G I RFE GFK++ K +
Sbjct: 3 ERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLH 40
>pdb|3VGS|A Chain A, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGS|B Chain B, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGT|A Chain A, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGT|B Chain B, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGT|C Chain C, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGT|D Chain D, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGT|E Chain E, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
Length = 141
Score = 103 bits (256), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 65/103 (63%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
ERT +IKPD V + ++G+I RFE+ G K++A K +Q + YA K++PFF L
Sbjct: 4 ERTLSIIKPDAVAKNVIGEIESRFEKAGLKIVAAKMLQLSQEQAEGFYAEHKERPFFGDL 63
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
+ +M+SGPVV V EG N I R ++GATNP + GTIR D
Sbjct: 64 VGFMTSGPVVVQVLEGENAIAANRDLMGATNPKEAEAGTIRAD 106
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQ 185
ERT +IKPD V + ++G+I RFE+ G K++A K +Q
Sbjct: 4 ERTLSIIKPDAVAKNVIGEIESRFEKAGLKIVAAKMLQ 41
>pdb|3VGU|A Chain A, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|B Chain B, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|C Chain C, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|D Chain D, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|E Chain E, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|F Chain F, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|G Chain G, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|H Chain H, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|A Chain A, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|B Chain B, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|C Chain C, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|D Chain D, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|E Chain E, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|F Chain F, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|G Chain G, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|H Chain H, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|I Chain I, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|J Chain J, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|K Chain K, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|L Chain L, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|M Chain M, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|N Chain N, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|O Chain O, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|P Chain P, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
Length = 141
Score = 102 bits (255), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 65/103 (63%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
ERT +IKPD V + ++G+I RFE+ G K++A K +Q + YA K++PFF L
Sbjct: 4 ERTLSIIKPDAVAKNVIGEIESRFEKAGLKIVAAKMLQLSQEQAEGFYAEHKERPFFGDL 63
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
+ +M+SGPVV V EG N I R ++GATNP + GTIR D
Sbjct: 64 VGFMTSGPVVVQVLEGENAIAANRDLMGATNPKEAEAGTIRAD 106
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQ 185
ERT +IKPD V + ++G+I RFE+ G K++A K +Q
Sbjct: 4 ERTLSIIKPDAVAKNVIGEIESRFEKAGLKIVAAKMLQ 41
>pdb|1K44|A Chain A, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|B Chain B, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|C Chain C, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|D Chain D, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|E Chain E, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|F Chain F, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
Length = 136
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 66/104 (63%), Gaps = 1/104 (0%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
ERT ++IKPDG++R L+G+I+ R E KG + A++ +L HYA + KPFF SL
Sbjct: 3 ERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSL 62
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPAD-CIPGTIRGD 126
+++++SGPVV + EG I R + G T+P PGTIRGD
Sbjct: 63 LEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQAAAPGTIRGD 106
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 27/36 (75%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKF 183
ERT ++IKPDG++R L+G+I+ R E KG + A++
Sbjct: 3 ERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQL 38
>pdb|3PJ9|A Chain A, Crystal Structure Of A Nucleoside Diphosphate Kinase From
Campylobacter Jejuni
pdb|3PJ9|B Chain B, Crystal Structure Of A Nucleoside Diphosphate Kinase From
Campylobacter Jejuni
pdb|3PJ9|C Chain C, Crystal Structure Of A Nucleoside Diphosphate Kinase From
Campylobacter Jejuni
pdb|3PJ9|D Chain D, Crystal Structure Of A Nucleoside Diphosphate Kinase From
Campylobacter Jejuni
Length = 140
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 67/103 (65%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
E+T +IKPD V++G++GKI+ RFE G ++ AMK VQ + YA K++PFF+ L
Sbjct: 5 EKTLSIIKPDAVKKGVIGKILDRFESNGLRIAAMKKVQLSKEQAENFYAVHKERPFFKDL 64
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
+++M SGPVV + EG + R ++GATNP + GTIR D
Sbjct: 65 VEFMISGPVVVSILEGEGAVLKNRDLMGATNPKEAKAGTIRAD 107
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 29/38 (76%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQ 185
E+T +IKPD V++G++GKI+ RFE G ++ AMK VQ
Sbjct: 5 EKTLSIIKPDAVKKGVIGKILDRFESNGLRIAAMKKVQ 42
>pdb|3EM1|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Dtdp
pdb|3EM1|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Dtdp
pdb|3G2X|A Chain A, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|B Chain B, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|C Chain C, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|D Chain D, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|E Chain E, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|F Chain F, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3FC9|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|C Chain C, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|D Chain D, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|E Chain E, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|F Chain F, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
Length = 146
Score = 96.7 bits (239), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 66/104 (63%), Gaps = 1/104 (0%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKF-VQADDKLLRTHYAALKDKPFFES 82
+RT ++IKPD +R LV +I+ R E+K FK+++MKF +A L+ HY ++ +F
Sbjct: 7 QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFND 66
Query: 83 LIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
L +M SGP++ +V+EG + I R + G TNP PGTIRGD
Sbjct: 67 LCDFMVSGPIISIVYEGTDAISKIRRLQGNTNPLASAPGTIRGD 110
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 28/36 (77%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKF 183
+RT ++IKPD +R LV +I+ R E+K FK+++MKF
Sbjct: 7 QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKF 42
>pdb|3DDI|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Tdp
pdb|3DDI|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Tdp
pdb|3ENA|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dgdp
pdb|3ENA|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dgdp
pdb|3ETM|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Cdp
pdb|3ETM|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Cdp
pdb|3EVM|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dcdp
pdb|3EVM|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dcdp
pdb|3FCV|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dudp
pdb|3FCV|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dudp
pdb|3DKD|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Gdp
pdb|3DKD|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Gdp
Length = 146
Score = 96.3 bits (238), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 66/104 (63%), Gaps = 1/104 (0%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKF-VQADDKLLRTHYAALKDKPFFES 82
+RT ++IKPD +R LV +I+ R E+K FK+++MKF +A L+ HY ++ +F
Sbjct: 7 QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFND 66
Query: 83 LIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
L +M SGP++ +V+EG + I R + G TNP PGTIRGD
Sbjct: 67 LCDFMVSGPIISIVYEGTDAISKIRRLQGNTNPLASAPGTIRGD 110
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 28/36 (77%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKF 183
+RT ++IKPD +R LV +I+ R E+K FK+++MKF
Sbjct: 7 QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKF 42
>pdb|4DI6|A Chain A, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DI6|B Chain B, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DI6|C Chain C, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DI6|D Chain D, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DI6|E Chain E, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DI6|F Chain F, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DZ6|A Chain A, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
pdb|4DZ6|B Chain B, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
pdb|4DZ6|C Chain C, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
pdb|4DZ6|D Chain D, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
pdb|4DZ6|E Chain E, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
pdb|4DZ6|F Chain F, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
Length = 190
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 67/108 (62%), Gaps = 5/108 (4%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHY-----AALKDKP 78
++T ++KPDGV+RGL+G +V RFE G K++A K + D+ L + HY +
Sbjct: 27 QKTLCIVKPDGVRRGLIGDVVSRFERVGLKMVAAKMLIVDESLAKKHYLYDDIVFRHSEA 86
Query: 79 FFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
+ SLIK++S+ PV V EG+ I+V R + GAT P IPGTIRGD
Sbjct: 87 VWNSLIKFISNSPVFTFVVEGVESIEVVRKLCGATEPKLAIPGTIRGD 134
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 30/41 (73%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
++T ++KPDGV+RGL+G +V RFE G K++A K + D+
Sbjct: 27 QKTLCIVKPDGVRRGLIGDVVSRFERVGLKMVAAKMLIVDE 67
>pdb|3EJM|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn Mutant
Complexed With Gdp
pdb|3EJM|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn Mutant
Complexed With Gdp
pdb|3EVO|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn Mutant
Complexed With Dtdp
pdb|3EVO|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn Mutant
Complexed With Dtdp
Length = 146
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 65/104 (62%), Gaps = 1/104 (0%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKF-VQADDKLLRTHYAALKDKPFFES 82
+RT ++IKPD +R LV +I+ R E+K FK+++MKF +A L+ HY ++ +F
Sbjct: 7 QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFND 66
Query: 83 LIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
+M SGP++ +V+EG + I R + G TNP PGTIRGD
Sbjct: 67 NCDFMVSGPIISIVYEGTDAISKIRRLQGNTNPLASAPGTIRGD 110
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 28/36 (77%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKF 183
+RT ++IKPD +R LV +I+ R E+K FK+++MKF
Sbjct: 7 QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKF 42
>pdb|3EMT|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-R107g Double
Mutant Complexed With Dgdp
pdb|3EMT|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-R107g Double
Mutant Complexed With Dgdp
Length = 146
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 65/104 (62%), Gaps = 1/104 (0%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKF-VQADDKLLRTHYAALKDKPFFES 82
+RT ++IKPD +R LV +I+ R E+K FK+++MKF +A L+ HY ++ +F
Sbjct: 7 QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFND 66
Query: 83 LIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
+M SGP++ +V+EG + I R + G TNP PGTIRGD
Sbjct: 67 NCDFMVSGPIISIVYEGTDAISKIRRLQGNTNPLASAPGTIRGD 110
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 28/36 (77%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKF 183
+RT ++IKPD +R LV +I+ R E+K FK+++MKF
Sbjct: 7 QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKF 42
>pdb|4DUT|A Chain A, The Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis
pdb|4DUT|B Chain B, The Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis
pdb|4EK2|A Chain A, The Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis Bound To Deoxyadenosine
Monophosphate
pdb|4EK2|B Chain B, The Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis Bound To Deoxyadenosine
Monophosphate
pdb|4HR2|A Chain A, Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis Bound To Adp
pdb|4HR2|B Chain B, Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis Bound To Adp
Length = 145
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 60/103 (58%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
ERT +IKPD V + ++G+I RFE G K++A + YA ++PFF+ L
Sbjct: 8 ERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLSRADAEKFYAVHAERPFFKDL 67
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
+++M SGPV+ V EG + I R ++GAT+P GTIR D
Sbjct: 68 VEFMISGPVMIQVLEGEDAILKNRDLMGATDPKKAEKGTIRAD 110
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQ 185
ERT +IKPD V + ++G+I RFE G K++A +
Sbjct: 8 ERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAH 45
>pdb|3FBF|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FCW|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3GPA|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
Length = 142
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 63/104 (60%), Gaps = 5/104 (4%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKF-VQADDKLLRTHYAALKDKPFFES 82
+RT ++IKPD +R LV +I+ R E+K FK+++MKF +A L+ HY ++ +F
Sbjct: 7 QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFND 66
Query: 83 LIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
L +M SGP++ +V+EG + I R + G PGTIRGD
Sbjct: 67 LCDFMVSGPIISIVYEGTDAISKIRRLQGNI----LTPGTIRGD 106
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 28/36 (77%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKF 183
+RT ++IKPD +R LV +I+ R E+K FK+++MKF
Sbjct: 7 QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKF 42
>pdb|3FBE|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBB|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBC|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
Length = 142
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 63/104 (60%), Gaps = 5/104 (4%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKF-VQADDKLLRTHYAALKDKPFFES 82
+RT ++IKPD +R LV +I+ R E+K FK+++MKF +A L+ HY ++ +F
Sbjct: 7 QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFND 66
Query: 83 LIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
L +M SGP++ +V+EG + I R + G PGTIRGD
Sbjct: 67 LCDFMVSGPIISIVYEGTDAISKIRRLQGNI----LTPGTIRGD 106
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 28/36 (77%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKF 183
+RT ++IKPD +R LV +I+ R E+K FK+++MKF
Sbjct: 7 QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKF 42
>pdb|3ZTQ|A Chain A, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|B Chain B, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|C Chain C, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|D Chain D, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|E Chain E, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|F Chain F, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|G Chain G, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|H Chain H, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTO|A Chain A, Orthorhombic Crystal Form C222 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTP|A Chain A, Orthorhombic Crystal Form P21212 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTP|C Chain C, Orthorhombic Crystal Form P21212 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTR|A Chain A, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|B Chain B, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|C Chain C, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|D Chain D, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|E Chain E, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|F Chain F, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|G Chain G, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|H Chain H, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|I Chain I, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|J Chain J, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|K Chain K, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|L Chain L, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTS|A Chain A, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|B Chain B, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|C Chain C, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|D Chain D, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|E Chain E, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|F Chain F, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|G Chain G, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|H Chain H, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|I Chain I, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|J Chain J, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|K Chain K, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|L Chain L, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
Length = 142
Score = 83.2 bits (204), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 67/105 (63%), Gaps = 3/105 (2%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
ERT I++KPD +++G +GKI+ RF ++GF++ A+K + + Y +++PFF+ L
Sbjct: 4 ERTLIIVKPDAMEKGALGKILDRFIQEGFQIKALKMFRFTPEKAGEFYYVHRERPFFQEL 63
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADC---IPGTIRG 125
+++MSSGPVV V EG + IK R ++G T+ + P +IR
Sbjct: 64 VEFMSSGPVVAAVLEGEDAIKRVREIIGPTDSEEARKVAPNSIRA 108
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 29/35 (82%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMK 182
ERT I++KPD +++G +GKI+ RF ++GF++ A+K
Sbjct: 4 ERTLIIVKPDAMEKGALGKILDRFIQEGFQIKALK 38
>pdb|2B8P|A Chain A, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus Ndk,
The First Viral Nucleoside Diphosphate Kinase
pdb|2B8P|B Chain B, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus Ndk,
The First Viral Nucleoside Diphosphate Kinase
pdb|3B6B|A Chain A, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|B Chain B, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|C Chain C, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|D Chain D, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|E Chain E, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|F Chain F, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
Length = 157
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 67/118 (56%), Gaps = 7/118 (5%)
Query: 10 LLQCALYATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKF-VQADDKLLR 68
L +LY A +RT ++IKPD +R LV +I+ R E+K FK+++MKF +A L+
Sbjct: 10 LESTSLYKKAGL--QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIE 67
Query: 69 THYAALKDKPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
HY ++ +F +M SGP++ +V+EG + I R + G PGTIRGD
Sbjct: 68 QHYKEHSEQSYFNDNCDFMVSGPIISIVYEGTDAISKIRRLQGNI----LTPGTIRGD 121
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 28/36 (77%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKF 183
+RT ++IKPD +R LV +I+ R E+K FK+++MKF
Sbjct: 22 QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKF 57
>pdb|2B8Q|A Chain A, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|B Chain B, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|C Chain C, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|D Chain D, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|E Chain E, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|F Chain F, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|3EE3|A Chain A, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|B Chain B, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|C Chain C, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|D Chain D, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|E Chain E, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|F Chain F, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EIC|A Chain A, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|B Chain B, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|C Chain C, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|D Chain D, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|E Chain E, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|F Chain F, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3ELH|A Chain A, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|B Chain B, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|C Chain C, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|D Chain D, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|E Chain E, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|F Chain F, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3GP9|A Chain A, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
pdb|3GP9|B Chain B, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
pdb|3GP9|C Chain C, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
pdb|3GP9|D Chain D, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
pdb|3GP9|E Chain E, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
pdb|3GP9|F Chain F, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
Length = 142
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 62/104 (59%), Gaps = 5/104 (4%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKF-VQADDKLLRTHYAALKDKPFFES 82
+RT ++IKPD +R LV +I+ R E+K FK+++MKF +A L+ HY ++ +F
Sbjct: 7 QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFND 66
Query: 83 LIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
+M SGP++ +V+EG + I R + G PGTIRGD
Sbjct: 67 NCDFMVSGPIISIVYEGTDAISKIRRLQGNI----LTPGTIRGD 106
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 28/36 (77%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKF 183
+RT ++IKPD +R LV +I+ R E+K FK+++MKF
Sbjct: 7 QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKF 42
>pdb|3EVW|A Chain A, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|B Chain B, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|C Chain C, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|D Chain D, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|E Chain E, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|F Chain F, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
Length = 142
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 62/104 (59%), Gaps = 5/104 (4%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKF-VQADDKLLRTHYAALKDKPFFES 82
+RT ++IKPD +R LV +I+ R E+K FK+++MKF +A L+ HY ++ +F
Sbjct: 7 QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFND 66
Query: 83 LIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
+M SGP++ +V+EG + I R + G PGTIRGD
Sbjct: 67 NCDFMVSGPIISIVYEGTDAISKIRRLQGNI----LTPGTIRGD 106
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 28/36 (77%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKF 183
+RT ++IKPD +R LV +I+ R E+K FK+++MKF
Sbjct: 7 QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKF 42
>pdb|1XQI|A Chain A, Crystal Structure Analysis Of An Ndp Kinase From
Pyrobaculum Aerophilum
pdb|1XQI|B Chain B, Crystal Structure Analysis Of An Ndp Kinase From
Pyrobaculum Aerophilum
pdb|1XQI|C Chain C, Crystal Structure Analysis Of An Ndp Kinase From
Pyrobaculum Aerophilum
Length = 195
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 70/136 (51%), Gaps = 33/136 (24%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKD------- 76
E+T +++KPD V RGLV +I+ RF++ G K++A+K V+A + + Y + ++
Sbjct: 16 EKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKXVKASPEEIERFYPSSEEWLQSAGQ 75
Query: 77 ---KPFFE-----------------------SLIKYMSSGPVVPMVWEGLNVIKVGRSML 110
K + E +L+KY +SGP V V +G +++ R ++
Sbjct: 76 KLLKAYQELGIDPRAKIGTDDPVEVGRIIKRNLVKYXTSGPNVVXVLKGNRAVEIVRKLV 135
Query: 111 GATNPADCIPGTIRGD 126
G T+P PGTIRGD
Sbjct: 136 GPTSPHSAPPGTIRGD 151
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 31/39 (79%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQA 186
E+T +++KPD V RGLV +I+ RF++ G K++A+K V+A
Sbjct: 16 EKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKXVKA 54
>pdb|3L8R|A Chain A, The Crystal Structure Of Ptca From S. Mutans
pdb|3L8R|B Chain B, The Crystal Structure Of Ptca From S. Mutans
pdb|3L8R|C Chain C, The Crystal Structure Of Ptca From S. Mutans
pdb|3L8R|D Chain D, The Crystal Structure Of Ptca From S. Mutans
pdb|3L8R|E Chain E, The Crystal Structure Of Ptca From S. Mutans
pdb|3L8R|F Chain F, The Crystal Structure Of Ptca From S. Mutans
pdb|3L8R|G Chain G, The Crystal Structure Of Ptca From S. Mutans
pdb|3L8R|H Chain H, The Crystal Structure Of Ptca From S. Mutans
Length = 120
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 27 FIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYA 72
F +I G R +V + EK + L K +A+D+LL+ H A
Sbjct: 28 FEIILNSGNARSIVHEAFDAMREKNYILAEQKLQEANDELLKAHQA 73
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,965,408
Number of Sequences: 62578
Number of extensions: 174198
Number of successful extensions: 513
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 371
Number of HSP's gapped (non-prelim): 137
length of query: 188
length of database: 14,973,337
effective HSP length: 93
effective length of query: 95
effective length of database: 9,153,583
effective search space: 869590385
effective search space used: 869590385
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)