Query psy6076
Match_columns 188
No_of_seqs 177 out of 1650
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 17:01:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6076.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6076hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0105 Ndk Nucleoside diphosp 100.0 8.4E-42 1.8E-46 254.4 8.8 125 23-147 2-126 (135)
2 PRK14542 nucleoside diphosphat 100.0 4.8E-41 1.1E-45 256.7 8.5 119 23-141 1-119 (137)
3 PRK14541 nucleoside diphosphat 100.0 2.5E-40 5.5E-45 253.6 8.5 119 23-141 1-119 (140)
4 PTZ00093 nucleoside diphosphat 100.0 5.5E-40 1.2E-44 254.2 9.4 120 23-142 2-121 (149)
5 PRK14545 nucleoside diphosphat 100.0 4.6E-40 9.9E-45 252.0 8.8 120 22-141 2-121 (139)
6 PRK14540 nucleoside diphosphat 100.0 1.2E-39 2.6E-44 248.4 9.0 119 23-141 2-120 (134)
7 cd04415 NDPk7A Nucleoside diph 100.0 1.4E-39 3.1E-44 247.0 7.2 116 24-141 1-119 (131)
8 PLN02931 nucleoside diphosphat 100.0 7.5E-39 1.6E-43 253.4 8.2 121 20-140 26-149 (177)
9 PRK00668 ndk mulitfunctional n 100.0 1.1E-38 2.5E-43 243.0 8.4 118 23-140 1-118 (134)
10 cd04413 NDPk_I Nucleoside diph 100.0 1.1E-38 2.4E-43 241.9 8.3 117 24-140 1-117 (130)
11 PLN02619 nucleoside-diphosphat 100.0 8.7E-39 1.9E-43 261.2 8.0 125 19-143 84-208 (238)
12 PRK14543 nucleoside diphosphat 100.0 9.7E-39 2.1E-43 251.0 8.0 122 19-140 1-137 (169)
13 cd04412 NDPk7B Nucleoside diph 100.0 1.7E-38 3.7E-43 242.0 7.6 118 24-141 1-122 (134)
14 cd04418 NDPk5 Nucleoside dipho 100.0 1.4E-38 3.1E-43 241.9 7.1 116 24-141 1-119 (132)
15 cd04414 NDPk6 Nucleoside dipho 100.0 5.8E-38 1.2E-42 239.4 7.6 117 24-140 1-121 (135)
16 cd00595 NDPk Nucleoside diphos 100.0 9.3E-38 2E-42 237.7 7.2 117 24-140 1-120 (133)
17 cd04416 NDPk_TX NDP kinase dom 100.0 7.1E-38 1.5E-42 238.1 6.4 116 24-140 1-119 (132)
18 PF00334 NDK: Nucleoside dipho 100.0 1.2E-36 2.6E-41 231.9 8.4 116 24-139 1-116 (135)
19 smart00562 NDK These are enzym 100.0 2.8E-36 6E-41 230.0 7.6 117 24-140 1-117 (135)
20 PRK14544 nucleoside diphosphat 100.0 7.7E-36 1.7E-40 237.0 8.4 111 21-131 1-144 (183)
21 KOG0888|consensus 100.0 1E-35 2.2E-40 229.8 3.7 133 23-157 5-140 (156)
22 PLN02931 nucleoside diphosphat 99.0 6.3E-10 1.4E-14 88.4 4.8 46 143-188 25-70 (177)
23 PLN02619 nucleoside-diphosphat 98.8 2.1E-09 4.5E-14 88.6 3.7 44 145-188 86-129 (238)
24 smart00676 DM10 Domains in hyp 91.0 0.033 7.2E-07 40.5 -1.6 16 3-18 72-87 (104)
25 COG1799 Uncharacterized protei 71.1 11 0.00024 29.8 5.1 48 20-71 69-116 (167)
26 TIGR03738 PRTRC_C PRTRC system 64.8 5 0.00011 26.8 1.8 29 60-93 21-49 (66)
27 PF14454 Prok_Ub: Prokaryotic 61.9 8 0.00017 25.8 2.3 28 61-93 23-50 (65)
28 PF04472 DUF552: Protein of un 50.1 29 0.00064 23.1 3.7 45 27-75 1-45 (73)
29 COG4996 Predicted phosphatase 40.5 30 0.00065 26.7 2.7 37 151-187 86-123 (164)
30 COG4996 Predicted phosphatase 38.9 25 0.00055 27.0 2.1 57 8-64 57-124 (164)
31 cd04906 ACT_ThrD-I_1 First of 33.4 54 0.0012 22.3 3.0 46 19-71 35-81 (85)
32 KOG4132|consensus 33.1 3E+02 0.0064 23.2 9.4 75 25-114 4-78 (260)
33 PF07576 BRAP2: BRCA1-associat 32.8 36 0.00078 24.9 2.1 17 63-79 63-79 (110)
34 cd00384 ALAD_PBGS Porphobilino 31.5 41 0.00088 29.3 2.5 46 28-75 152-197 (314)
35 PRK09283 delta-aminolevulinic 31.4 51 0.0011 28.8 3.1 45 29-75 161-205 (323)
36 PRK13384 delta-aminolevulinic 27.2 57 0.0012 28.5 2.7 45 29-75 163-207 (322)
37 PF03698 UPF0180: Uncharacteri 26.0 68 0.0015 22.2 2.4 26 158-184 5-30 (80)
38 PF06130 PduL: Propanediol uti 25.7 54 0.0012 22.1 1.8 20 53-72 4-23 (71)
39 TIGR01124 ilvA_2Cterm threonin 25.5 1.4E+02 0.0031 27.5 5.1 17 164-180 472-488 (499)
40 cd04823 ALAD_PBGS_aspartate_ri 25.3 56 0.0012 28.5 2.3 45 29-75 158-202 (320)
41 KOG2738|consensus 25.2 12 0.00026 32.5 -1.8 51 4-56 221-275 (369)
42 cd06335 PBP1_ABC_ligand_bindin 23.6 3.7E+02 0.008 22.6 7.1 75 24-110 138-214 (347)
43 KOG0328|consensus 22.4 1.8E+02 0.0039 25.5 4.8 30 37-66 150-179 (400)
44 cd04883 ACT_AcuB C-terminal AC 22.4 1.8E+02 0.004 18.2 4.0 31 22-55 39-69 (72)
45 PRK03094 hypothetical protein; 21.9 99 0.0021 21.4 2.6 25 158-183 5-29 (80)
46 TIGR00640 acid_CoA_mut_C methy 21.8 2E+02 0.0044 21.4 4.5 43 26-70 6-49 (132)
47 PF02700 PurS: Phosphoribosylf 21.8 2.7E+02 0.0059 19.0 4.8 32 26-59 5-38 (80)
48 PRK12483 threonine dehydratase 21.4 2.1E+02 0.0045 26.7 5.4 58 40-114 399-466 (521)
49 COG0113 HemB Delta-aminolevuli 20.8 1E+02 0.0022 26.9 3.0 46 29-76 166-211 (330)
50 PRK09224 threonine dehydratase 20.5 2.4E+02 0.0052 26.0 5.6 17 164-180 476-492 (504)
51 cd06355 PBP1_FmdD_like Peripla 20.4 5.1E+02 0.011 21.8 7.3 42 23-64 132-174 (348)
No 1
>COG0105 Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=8.4e-42 Score=254.42 Aligned_cols=125 Identities=50% Similarity=0.824 Sum_probs=118.9
Q ss_pred cceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCch
Q psy6076 23 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNV 102 (188)
Q Consensus 23 ~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~na 102 (188)
.|+||+|||||+++++++|+||++++++||+|+++||+++++++|++||.+|+++|||++|++||+|||+++++|+|+||
T Consensus 2 ~erT~~iiKPDaV~R~LIG~IisrfE~~Glkiva~K~~~~~~e~Ae~~Y~~h~~kpFf~~Lv~fitSgPvv~~VleGe~a 81 (135)
T COG0105 2 MERTLSIIKPDAVKRGLIGEIISRFEKKGLKIVALKMVQLSRELAENHYAEHKGKPFFGELVEFITSGPVVAMVLEGENA 81 (135)
T ss_pred cceEEEEECcchhhhhhHHHHHHHHHHCCCEEEeeeeeccCHHHHHHHHHHHcCCCccHHHHhheecCcEEEEEEecHhH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhhccCCCCC
Q psy6076 103 IKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYATASPNK 147 (188)
Q Consensus 103 V~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~~~~~~~~ 147 (188)
|+.+|+++|+|||..|+|+|||+.||.+..+|..|.+++.+++..
T Consensus 82 i~~~R~l~GaTnp~~A~pGTIRgdfa~~~~~N~vHgSDs~esA~r 126 (135)
T COG0105 82 ISVVRKLMGATNPANAAPGTIRGDFALSVGENVVHGSDSPESAER 126 (135)
T ss_pred HHHHHHHHCCCCcccCCCCeEeeehhcccCcceEEccCCHHHHhH
Confidence 999999999999999999999999999999998777776544433
No 2
>PRK14542 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=4.8e-41 Score=256.68 Aligned_cols=119 Identities=36% Similarity=0.580 Sum_probs=114.4
Q ss_pred cceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCch
Q psy6076 23 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNV 102 (188)
Q Consensus 23 ~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~na 102 (188)
+|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+|||+++|+|.|+||
T Consensus 1 ~e~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~f~~~Lv~~m~sGp~va~~l~g~na 80 (137)
T PRK14542 1 MSRTFIMIKPDGVKNKHVGNILQRIEKEGFKILGLKYLKLSLEDAKQFYKVHSARPFYNDLCNYMSSGPIVAAALERDNA 80 (137)
T ss_pred CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCeEEEEEeCCCH
Confidence 48999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhhc
Q psy6076 103 IKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA 141 (188)
Q Consensus 103 V~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~~ 141 (188)
|++||+++||+||..|.|+|||++||.+.++|..|..++
T Consensus 81 v~~~R~l~Gpt~p~~A~p~siR~~fg~~~~~N~vH~Sds 119 (137)
T PRK14542 81 VLHWREVIGATDPKEAAAGTIRALYAESKEANAVHGSDS 119 (137)
T ss_pred HHHHHHHhCCCCchhCCCCCchHHhcCcccceeEECCCC
Confidence 999999999999999999999999999999997666654
No 3
>PRK14541 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=2.5e-40 Score=253.65 Aligned_cols=119 Identities=33% Similarity=0.584 Sum_probs=114.0
Q ss_pred cceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCch
Q psy6076 23 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNV 102 (188)
Q Consensus 23 ~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~na 102 (188)
.|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|.|+||
T Consensus 1 ~e~TlaiIKPdav~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~~~~~k~ff~~Lv~~m~sgp~va~~l~g~na 80 (140)
T PRK14541 1 MERTLTILKPDCVRKQLIGAVIDKIERAGFRVVAMKKTRLTKETAGEFYAVHRERPFYGELVEFMSSGPCVPMILEKENA 80 (140)
T ss_pred CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHHcCCccHHHHHHHHhcCCeEEEEEecCcH
Confidence 48999999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhhc
Q psy6076 103 IKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA 141 (188)
Q Consensus 103 V~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~~ 141 (188)
|++||+++||+||..|.|+|||++||.+..+|+.|..++
T Consensus 81 v~~~R~l~Gpt~p~~A~p~siR~~yg~~~~~N~vHgSds 119 (140)
T PRK14541 81 VADFRTLIGATDPAEAAEGTVRKLYADSKGENIVHGSDS 119 (140)
T ss_pred HHHHHHHhCCCCchhCCCCCchHHhcccccceeEECCCC
Confidence 999999999999999999999999999999997665554
No 4
>PTZ00093 nucleoside diphosphate kinase, cytosolic; Provisional
Probab=100.00 E-value=5.5e-40 Score=254.18 Aligned_cols=120 Identities=58% Similarity=0.992 Sum_probs=114.7
Q ss_pred cceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCch
Q psy6076 23 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNV 102 (188)
Q Consensus 23 ~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~na 102 (188)
.|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|++++||++|++||+|||+++|+++|+||
T Consensus 2 ~e~Tl~lIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~~~a~~fY~~~~gk~ff~~Lv~~m~sGp~val~l~g~na 81 (149)
T PTZ00093 2 SERTFIMVKPDGVQRGLVGEIIKRFEKKGYKLVALKMLQPTPEIAEEHYKEHKGKPFFPGLVKYISSGPVVCMVWEGKNV 81 (149)
T ss_pred CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeEeecCCHHHHHHHHHHhcCCchHHHHHHHHhcCCEEEEEEeCCCH
Confidence 58999999999999889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhhcc
Q psy6076 103 IKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYAT 142 (188)
Q Consensus 103 V~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~~~ 142 (188)
|++||+++||+||..|.|+|||++||++..+|+.|..++.
T Consensus 82 v~~~R~l~Gpt~p~~a~p~siR~~fg~~~~~NavH~Sds~ 121 (149)
T PTZ00093 82 VKQGRKLLGATNPLESAPGTIRGDFCVDVGRNVIHGSDSV 121 (149)
T ss_pred HHHHHHHhCCCCccccCCCcchhhhccccccceeecCCCH
Confidence 9999999999999999999999999999999976665543
No 5
>PRK14545 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=4.6e-40 Score=252.01 Aligned_cols=120 Identities=36% Similarity=0.580 Sum_probs=114.5
Q ss_pred CcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCc
Q psy6076 22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLN 101 (188)
Q Consensus 22 ~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~n 101 (188)
..|+||+|||||+++++++|+||++|+++||.|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|.|+|
T Consensus 2 ~~e~Tl~iIKPdav~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~ff~~Lv~~m~sGp~va~~l~g~n 81 (139)
T PRK14545 2 AGNRTFTMIKPDAVENGHIGGILDMITAAGFRIVAMKLTQLTVADAETFYAVHAERPFYGELVEFMSRGPIVAAILEKEN 81 (139)
T ss_pred CcceEEEEECchhhhcCcHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCEEEEEEecCC
Confidence 46899999999999988899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhhc
Q psy6076 102 VIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA 141 (188)
Q Consensus 102 aV~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~~ 141 (188)
||++||+++||+||..|.|+|||++||.+..+|..|..++
T Consensus 82 av~~~R~l~Gpt~p~~A~p~siR~~yg~~~~~N~vH~Sds 121 (139)
T PRK14545 82 AVEDFRTLIGATNPADAAEGTIRKKYAKSIGENAVHGSDS 121 (139)
T ss_pred HHHHHHHHhCCCCcccCCCCChhHHhcccccceeEECCCC
Confidence 9999999999999999999999999999999986655543
No 6
>PRK14540 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=1.2e-39 Score=248.35 Aligned_cols=119 Identities=47% Similarity=0.777 Sum_probs=113.9
Q ss_pred cceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCch
Q psy6076 23 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNV 102 (188)
Q Consensus 23 ~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~na 102 (188)
.|+||+|||||+++++++|+||++|+++||.|+++||++||+++|++||.+|.+++||++|++||+|||+++|+|.|+||
T Consensus 2 ~e~Tl~lIKPda~~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~f~~~L~~~m~sgp~val~l~g~na 81 (134)
T PRK14540 2 KERTFVALKPDAVERKLIGKIIQRFENKGFEIVEMKMLKLTREMAEEYYEEHKGKEFYERLINFMTSGRIVAMVIEGENA 81 (134)
T ss_pred ceeEEEEECcchhhcCchHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhCCCccHHHHHHHHccCCeEEEEEeCCCh
Confidence 58999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhhc
Q psy6076 103 IKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA 141 (188)
Q Consensus 103 V~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~~ 141 (188)
|++||+++||++|..|+|+|||+.||.+..+|..|..++
T Consensus 82 v~~~R~l~Gpt~p~~a~p~siR~~fg~~~~~N~vH~Sds 120 (134)
T PRK14540 82 ISTVRKMIGKTNPAEAEPGTIRGDFGLYTPANIIHASDS 120 (134)
T ss_pred HHHHHHHhCCCCcccCCCCcchhhhcccccceeEECCCC
Confidence 999999999999999999999999999999987665543
No 7
>cd04415 NDPk7A Nucleoside diphosphate kinase 7 domain A (NDPk7A): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=100.00 E-value=1.4e-39 Score=247.05 Aligned_cols=116 Identities=32% Similarity=0.518 Sum_probs=111.0
Q ss_pred ceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCchh
Q psy6076 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNVI 103 (188)
Q Consensus 24 e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~naV 103 (188)
|+||+|||||++++ +|+||++|+++||.|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|.|+|||
T Consensus 1 erTl~iIKPdav~~--~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~y~~~~gk~f~~~Lv~~m~sgp~va~~l~g~nav 78 (131)
T cd04415 1 EKTLALIKPDAYSK--IGKIIQIIEDAGFTITKAKMTKLSRKEAQDFYAEHQSKPFYNELVQFMTSGPIVAMELVGDDAI 78 (131)
T ss_pred CeEEEEECcHHHHh--HHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCeEEEEEECCcHH
Confidence 69999999999986 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCC---CCCCcccchhhhhhhhhhhhhhc
Q psy6076 104 KVGRSMLGATNPADC---IPGTIRGDLCLLVCCLLQCALYA 141 (188)
Q Consensus 104 ~~~r~l~Gp~~~~~a---~p~slRa~fg~~~~~n~~~~~~~ 141 (188)
++||+++||+||..| .|+|||++||.+.++|..|..++
T Consensus 79 ~~~R~l~Gpt~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds 119 (131)
T cd04415 79 SEWRKLLGPTNSSVARSDAPNSIRALFGTDGTRNAAHGSDS 119 (131)
T ss_pred HHHHHHhCCCChHHhhccCCCcchhhhcccccceeEECCCC
Confidence 999999999999987 89999999999999997666654
No 8
>PLN02931 nucleoside diphosphate kinase family protein
Probab=100.00 E-value=7.5e-39 Score=253.36 Aligned_cols=121 Identities=32% Similarity=0.456 Sum_probs=114.5
Q ss_pred CCCcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEee
Q psy6076 20 SPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEG 99 (188)
Q Consensus 20 ~~~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g 99 (188)
.+..|+||+|||||++.++++|+|+++|+++||+|+++||++||+++|++||.+|++++||++|++||+|||+++|+|.|
T Consensus 26 ~~~~erTlalIKPdav~~~~~G~Il~~I~~~Gf~I~~~K~~~Lt~e~a~~fY~~h~gk~ff~~Lv~~mtSGP~vam~L~g 105 (177)
T PLN02931 26 ASEEERTLAMIKPDGLSGNYTERIKEVILESGFSIVKEMTTQLDEDRASLFYAEHSSRSFFPSLVKYMTSGPVLVMVLEK 105 (177)
T ss_pred CCcceeEEEEECchhhhcccHHHHHHHHHHCCCEEEeeeeecCCHHHHHHHHHHhCCCccHHHHHHHHHhCCeEEEEEec
Confidence 35689999999999998888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHhCCCCCCCC---CCCCcccchhhhhhhhhhhhhh
Q psy6076 100 LNVIKVGRSMLGATNPADC---IPGTIRGDLCLLVCCLLQCALY 140 (188)
Q Consensus 100 ~naV~~~r~l~Gp~~~~~a---~p~slRa~fg~~~~~n~~~~~~ 140 (188)
+|||++||+++||+||..| +|+|||++||.+..+|..|..+
T Consensus 106 ~naV~~~R~liGptdp~~A~~~~P~sIRa~fG~~~~rN~vHgSD 149 (177)
T PLN02931 106 ENAVSDWRTLIGPTDARKAKISHPNSIRAMCGLDSEKNCVHGSD 149 (177)
T ss_pred CCHHHHHHHHhCCCChhhhccCCCCCchHHhcCcccccceECCC
Confidence 9999999999999999987 6999999999999998655544
No 9
>PRK00668 ndk mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated
Probab=100.00 E-value=1.1e-38 Score=243.04 Aligned_cols=118 Identities=52% Similarity=0.852 Sum_probs=113.0
Q ss_pred cceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCch
Q psy6076 23 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNV 102 (188)
Q Consensus 23 ~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~na 102 (188)
.|+|++|||||+++++++|+||++|+++||.|+++||++||+++|++||.+|.+++||++|++||+|||+++|+|.|+||
T Consensus 1 ~e~Tl~iIKPd~~~~~~~g~Il~~i~~~Gf~I~~~k~~~ls~~~a~~fy~~~~~k~f~~~Lv~~m~sgp~~al~l~g~na 80 (134)
T PRK00668 1 MERTFSIIKPDAVQRGLIGEIISRFEKKGLKIVALKMMQLSRELAEGHYAEHKEKPFFGELVEFMTSGPVVVMVLEGENA 80 (134)
T ss_pred CceEEEEECchHhhcCcHHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhcCCchHHHHHHHhccCCeEEEEEeCchH
Confidence 48999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhh
Q psy6076 103 IKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALY 140 (188)
Q Consensus 103 V~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~ 140 (188)
|++||+++||+||..+.|+|||++||.+.++|+.|..+
T Consensus 81 v~~~r~l~Gp~~p~~a~p~siR~~~g~~~~~N~vH~sd 118 (134)
T PRK00668 81 IAKVRELMGATNPAEAAPGTIRGDFALSIGENVVHGSD 118 (134)
T ss_pred HHHHHHHhCCCCccccCCCcchhhhccccccccEECCC
Confidence 99999999999999999999999999999998655544
No 10
>cd04413 NDPk_I Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate. The mammalian nm23/NDP kinase gene family can be divided into two distinct groups. The group I genes encode proteins that generally have highly homologous counterparts in other organisms and possess the classic enzymatic activity of a kinase. This group includes vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its counterparts in bacteria, archea and other eukaryotes. NDP kinases exist in two different quaternary structures; all known eukaryotic enzymes are hexamers, while some bacterial enzymes are tetramers, as in Myxococcus. They possess the NDP kinase active site motif (NXXH[G/A]SD) and the nine residues that
Probab=100.00 E-value=1.1e-38 Score=241.91 Aligned_cols=117 Identities=53% Similarity=0.911 Sum_probs=112.4
Q ss_pred ceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCchh
Q psy6076 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNVI 103 (188)
Q Consensus 24 e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~naV 103 (188)
|+|++|||||++.++++|+||++|+++||.|+++||++|++++|++||.+|.++|||++|+++|+|||+++|+|.|+|||
T Consensus 1 e~Tl~lIKPda~~~~~~g~Il~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~k~~~~~l~~~m~sgp~~al~l~~~nav 80 (130)
T cd04413 1 ERTLVIIKPDGVQRGLIGEIISRFERKGLKIVALKMLQLTEELAEEHYAEHKGKPFFPELVEFMTSGPVVAMVLEGENAV 80 (130)
T ss_pred CeeEEEECchHhhcCcHHHHHHHHHHCCCEEEEeeeccCCHHHHHHHhhhhcCCchHHHHHHHHhcCCEEEEEEeCCcHH
Confidence 68999999999988889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhh
Q psy6076 104 KVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALY 140 (188)
Q Consensus 104 ~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~ 140 (188)
++||+++||+||+.++|+|||++||++..+|..|..+
T Consensus 81 ~~~r~l~Gp~~~~~a~p~slR~~~G~~~~~NavH~sd 117 (130)
T cd04413 81 KTVRKLMGATNPADAAPGTIRGDFALSIGRNIVHGSD 117 (130)
T ss_pred HHHHHHhCCCCccccCCCCchhhhcccccccceECCC
Confidence 9999999999999999999999999999999665554
No 11
>PLN02619 nucleoside-diphosphate kinase
Probab=100.00 E-value=8.7e-39 Score=261.23 Aligned_cols=125 Identities=51% Similarity=0.895 Sum_probs=118.6
Q ss_pred cCCCcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEe
Q psy6076 19 ASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWE 98 (188)
Q Consensus 19 ~~~~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~ 98 (188)
.+...|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|+
T Consensus 84 ~a~~~ErTlaiIKPDaV~rglvGeII~rIe~~Gf~Iva~Kmv~Lt~e~AeefY~ehkgKpFf~~Lv~fMtSGPvvamvL~ 163 (238)
T PLN02619 84 HAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKVVVPSKEFAQKHYHDLKERPFFNGLCDFLSSGPVVAMVWE 163 (238)
T ss_pred ccchhceEEEEECcchhhcCchHHHHHHHHHCCCEEEehhhccCCHHHHHHHHHHhcCCCcHHHHHHHHhcCCeEEEEEE
Confidence 56679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCchhHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhhccC
Q psy6076 99 GLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYATA 143 (188)
Q Consensus 99 g~naV~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~~~~ 143 (188)
|+|+|++||+++||+||..+.|+|||++||.+.++|..|..++.+
T Consensus 164 GenaV~~~R~LiGpTdP~~A~PgTIRg~fG~~~~rNaVHgSDS~E 208 (238)
T PLN02619 164 GEGVIKYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPE 208 (238)
T ss_pred CCcHHHHHHHHhCCCCccccCCCcchhhhcccccceeeecCCCHH
Confidence 999999999999999999999999999999999999766655433
No 12
>PRK14543 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=9.7e-39 Score=251.01 Aligned_cols=122 Identities=39% Similarity=0.655 Sum_probs=113.9
Q ss_pred cCCCcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhH-----HhcCCCchhhhhchhccCcEE
Q psy6076 19 ASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYA-----ALKDKPFFESLIKYMSSGPVV 93 (188)
Q Consensus 19 ~~~~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~-----~~~~~~~~~~lv~~mtsGp~v 93 (188)
++...|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||. +|+++|||++|++||+|||++
T Consensus 1 ~~~~~e~Tl~iIKPDav~~~~~G~Ii~~ie~~Gf~I~~~k~~~lt~e~a~~fY~~~~~~~h~gk~ff~~Lv~~mtsGP~v 80 (169)
T PRK14543 1 MSTLIQKTLCIIKPDGVRRGLIGNVVSRFERVGLKIVAAKMLLVDRSMAEKHYLYDDIAVRHGEAVWKSLIKFISSSPVF 80 (169)
T ss_pred CCCccceEEEEECcchhhcCchHHHHHHHHHCCCEEEeeeeccCCHHHHHHHhccCccccccCCchHHHHHHHHccCCeE
Confidence 456789999999999999999999999999999999999999999999999995 799999999999999999999
Q ss_pred EEEEeeCchhHHHHHHhCCCCCCCCCCCCcccchhhh----------hhhhhhhhhh
Q psy6076 94 PMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLL----------VCCLLQCALY 140 (188)
Q Consensus 94 al~l~g~naV~~~r~l~Gp~~~~~a~p~slRa~fg~~----------~~~n~~~~~~ 140 (188)
+|+|.|+|||++||+++||+||..|.|+|||++||.+ ..+|+.|+.+
T Consensus 81 alvl~g~naI~~~R~l~Gpt~p~~a~p~tIR~~fg~~~~~~~~~~~~~~rN~vH~SD 137 (169)
T PRK14543 81 VFVVEGVESVEVVRKFCGSTEPKLAIPGTIRGDFSYHSFNYANEKGFSVYNVIHASA 137 (169)
T ss_pred EEEEECCCHHHHHHHHhCCCCccccCCCcchhhhcccccccccccccceeeEEECCC
Confidence 9999999999999999999999999999999999986 5677655444
No 13
>cd04412 NDPk7B Nucleoside diphosphate kinase 7 domain B (NDPk7B): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=100.00 E-value=1.7e-38 Score=242.05 Aligned_cols=118 Identities=23% Similarity=0.360 Sum_probs=112.7
Q ss_pred ceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCC-CchhhhhchhccCcEEEEEEeeCch
Q psy6076 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDK-PFFESLIKYMSSGPVVPMVWEGLNV 102 (188)
Q Consensus 24 e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~-~~~~~lv~~mtsGp~val~l~g~na 102 (188)
++||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|.++ +||++|+++|+|||+++|+|.|+||
T Consensus 1 ~~Tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~~l~~~m~sGp~val~l~g~na 80 (134)
T cd04412 1 NCTVCIIKPHAVSHGLLGEILQQILDEGFEITALQMFNLTRANAEEFLEVYKGVVPELPAMVDELTSGPCIALEIAGENA 80 (134)
T ss_pred CcEEEEECchHhhcCchHHHHHHHHHCCCEEEEeEeecCCHHHHHHHHHHHcCccchHHHHHHHHhcCCeEEEEEECCcH
Confidence 589999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred hHHHHHHhCCCCCCCC---CCCCcccchhhhhhhhhhhhhhc
Q psy6076 103 IKVGRSMLGATNPADC---IPGTIRGDLCLLVCCLLQCALYA 141 (188)
Q Consensus 103 V~~~r~l~Gp~~~~~a---~p~slRa~fg~~~~~n~~~~~~~ 141 (188)
|++||+++||+||..| +|+|||++||.+..+|..|+.++
T Consensus 81 v~~~r~l~Gpt~p~~A~~~~p~siR~~yg~~~~~N~vH~Sds 122 (134)
T cd04412 81 VKTFREFCGPFDPEIAKQLRPNTLRARYGKDKVQNAVHCTDL 122 (134)
T ss_pred HHHHHHHhCCCChHHhcccCCCCeehhhcCcCcceeEEcCCC
Confidence 9999999999999877 79999999999999997666553
No 14
>cd04418 NDPk5 Nucleoside diphosphate kinase homolog 5 (NDP kinase homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is almost exclusively found in testis, especially in the flagella of spermatids and spermatozoa, in association with axoneme microtubules, and may play a role in spermatogenesis by increasing the ability of late-stage spermatids to eliminate reactive oxygen species. It belongs to the nm23 Group II genes and appears to differ from the other human NDPks in that it lacks two important catalytic site residues, and thus does not appear to possess NDP kinase activity. NDPk5 confers protection from cell death by Bax and alters the cellular levels of several antioxidant enzymes, including glutathione peroxidase 5 (Gpx5).
Probab=100.00 E-value=1.4e-38 Score=241.89 Aligned_cols=116 Identities=31% Similarity=0.417 Sum_probs=110.6
Q ss_pred ceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCchh
Q psy6076 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNVI 103 (188)
Q Consensus 24 e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~naV 103 (188)
|+||+|||||++++ +|+||++|+++||+|+++||++||+++|++||.+|.+++||++|+++|+|||+++|+|.|+|||
T Consensus 1 e~Tl~iIKPda~~~--~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~Lv~~m~sgp~val~l~g~~aV 78 (132)
T cd04418 1 ERTLAIIKPDAVHK--AEEIEDIILESGFTIVQKRKLQLSPEQCSDFYAEHYGKMFFPHLVAYMSSGPIVAMVLARHNAI 78 (132)
T ss_pred CeEEEEECcHHHhh--HHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCccHHHHHHHHhcCCeEEEEEecCCHH
Confidence 68999999999987 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCC---CCCCcccchhhhhhhhhhhhhhc
Q psy6076 104 KVGRSMLGATNPADC---IPGTIRGDLCLLVCCLLQCALYA 141 (188)
Q Consensus 104 ~~~r~l~Gp~~~~~a---~p~slRa~fg~~~~~n~~~~~~~ 141 (188)
++||+++||+||..| .|+|||++||.+..+|..|..++
T Consensus 79 ~~~R~l~Gpt~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds 119 (132)
T cd04418 79 SYWKELLGPTNSLKAKETHPDSLRAIYGTDDLRNAVHGSDS 119 (132)
T ss_pred HHHHHHHCCCChHHhccCCCCChHHhhcCcccceeEECCCC
Confidence 999999999999988 79999999999999987665553
No 15
>cd04414 NDPk6 Nucleoside diphosphate kinase 6 (NDP kinase 6, NDPk6, NM23-H6; NME6; Inhibitor of p53-induced apoptosis-alpha, IPIA-alpha): The nm23-H6 gene encoding NDPk6 is expressed mainly in mitochondria, but also found at a lower level in most tissues. NDPk6 has all nine residues considered crucial for enzyme structure and activity, and has been found to have NDP kinase activity. It may play a role in cell growth and cell cycle progression. The nm23-H6 gene locus has been implicated in a variety of malignant tumors.
Probab=100.00 E-value=5.8e-38 Score=239.41 Aligned_cols=117 Identities=27% Similarity=0.378 Sum_probs=108.8
Q ss_pred ceEEEEEcCccccCCch-HHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCch
Q psy6076 24 ERTFIMIKPDGVQRGLV-GKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNV 102 (188)
Q Consensus 24 e~Tl~lIKPd~~~~~~~-g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~na 102 (188)
|+||+|||||++++++. |.|++.|+++||.|+++||++||+++|++||.+|.+++||++|++||+|||+++|+|.|+||
T Consensus 1 e~Tl~lIKPda~~~~~~~~~I~~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~~~f~~~Lv~~m~sgp~val~l~~~na 80 (135)
T cd04414 1 QLTLALIKPDAVAHPLALEAVRQLILSNGFTIVRKKELRWTTEDAERFYAEHKGKFFYDRLVSFMTSGPSWALILAHENA 80 (135)
T ss_pred CeEEEEECchHHhCCchHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCeEEEEEEcCCH
Confidence 69999999999998876 56777788999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhCCCCCCCC---CCCCcccchhhhhhhhhhhhhh
Q psy6076 103 IKVGRSMLGATNPADC---IPGTIRGDLCLLVCCLLQCALY 140 (188)
Q Consensus 103 V~~~r~l~Gp~~~~~a---~p~slRa~fg~~~~~n~~~~~~ 140 (188)
|++||+++||+||..| .|+|||++||++..+|..|..+
T Consensus 81 V~~~r~l~Gp~~p~~A~~~~p~siR~~fg~~~~~N~vH~Sd 121 (135)
T cd04414 81 IKTWRALMGPTKVFRARASAPDSIRGLYGLTDTRNATHGSD 121 (135)
T ss_pred HHHHHHHhCCCChhHhccCCCCCcHHHhcCcccceeEECCC
Confidence 9999999999999866 7999999999999998655554
No 16
>cd00595 NDPk Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation. They are vital for DNA/RNA synthesis, cell division, macromolecular metabolism and growth. The enzymes generate NTPs or their deoxy derivatives by terminal (gamma) phosphotransfer from an NTP such as ATP or GTP to any nucleoside diphosphate (NDP) or its deoxy derivative. The sequence of NDPk has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism. The first confirmed metastasis suppressor gene was the NDP kinase protein encoded by the nm23 gene. Unicellular organisms generally possess only one gene encoding NDP kinase, while most multicellular organisms possess not only an ortholog that provides most of the NDP kinase enzymatic a
Probab=100.00 E-value=9.3e-38 Score=237.66 Aligned_cols=117 Identities=40% Similarity=0.655 Sum_probs=111.4
Q ss_pred ceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCchh
Q psy6076 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNVI 103 (188)
Q Consensus 24 e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~naV 103 (188)
|+|++|||||++.+|++|+||++|+++||.|+++||++||+++|++||.+|.++|||++|+++|+|||+++|+|.|+|||
T Consensus 1 e~tl~iIKPd~~~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~~~~~~~lv~~m~sGp~v~l~l~g~~av 80 (133)
T cd00595 1 ERTLALIKPDAVAEGLLGEIIMRIEDAGFEIVAMKELHLTEEQAEEFYVEHKGRPFFPDLVQFMSSGPVVAMILEKDNAV 80 (133)
T ss_pred CcEEEEECchHHhcCcHHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhcCCchHHHHHHHHhcCCeEEEEEecCChH
Confidence 68999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCC---CCCCcccchhhhhhhhhhhhhh
Q psy6076 104 KVGRSMLGATNPADC---IPGTIRGDLCLLVCCLLQCALY 140 (188)
Q Consensus 104 ~~~r~l~Gp~~~~~a---~p~slRa~fg~~~~~n~~~~~~ 140 (188)
++||+++||+||..| .|+|||++||.+..+|..|..+
T Consensus 81 ~~~r~l~Gp~~p~~a~~~~p~siR~~~g~~~~~N~vH~Sd 120 (133)
T cd00595 81 GEWREMLGPTNPEIARHLAPGSLRADFGTDVLRNAVHGSD 120 (133)
T ss_pred HHHHHHhCCCChhHhccCCCCChHHHhcCcccceeEECCC
Confidence 999999999999855 7999999999999999655554
No 17
>cd04416 NDPk_TX NDP kinase domain of thioredoxin domain-containing proteins (TXNDC3 and TXNDC6): Txl-2 (TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of Group II N-terminal thioredoxin domains followed by one or three NDP kinase domains, respectively. Sptrx-2, which has a tissue specific distribution in human testis, has been considered as a member of the nm23 family (nm23-H8) and exhibits a high homology with sea urchin IC1 (intermediate chain-1) protein, a component of the sperm axonemal outer dynein arm complex. Txl-2 is mainly represented in close association with microtubules within tissues with cilia and flagella such as seminiferous epithelium (spermatids) and lung airway epithelium, suggesting possible role in control of microtubule stability and maintenance.
Probab=100.00 E-value=7.1e-38 Score=238.07 Aligned_cols=116 Identities=26% Similarity=0.478 Sum_probs=110.5
Q ss_pred ceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCchh
Q psy6076 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNVI 103 (188)
Q Consensus 24 e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~naV 103 (188)
|+||+|||||++.+ ++|+|+++|+++||.|+++||++||+++|++||.+|.++|||++|++||+|||+++|+|.|+|||
T Consensus 1 e~Tl~iIKPdav~~-~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~fY~~~~~~~~~~~lv~~m~sgp~v~l~l~~~~av 79 (132)
T cd04416 1 EYTLALIKPDAVAE-KKDEILEKIKEAGFEILAQKEMVLTEEQAREFYKEHEEEDYFEDLVEFMTSGPSLILVLSKENAV 79 (132)
T ss_pred CeEEEEEChHHHHH-HHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCeEEEEEeCCCHH
Confidence 68999999999977 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCC---CCCCcccchhhhhhhhhhhhhh
Q psy6076 104 KVGRSMLGATNPADC---IPGTIRGDLCLLVCCLLQCALY 140 (188)
Q Consensus 104 ~~~r~l~Gp~~~~~a---~p~slRa~fg~~~~~n~~~~~~ 140 (188)
++||+++||+||..| .|+|||++||.+..+|..|..+
T Consensus 80 ~~~r~l~Gp~~p~~A~~~~p~slR~~fg~~~~~N~vH~Sd 119 (132)
T cd04416 80 EEWRELMGPTDPEEAKEEKPDSLRAQFARDHLSNAVHGSS 119 (132)
T ss_pred HHHHHHhCCCChHHhhccCCCChHHHhcCcccceeEECCC
Confidence 999999999999987 8999999999999998655554
No 18
>PF00334 NDK: Nucleoside diphosphate kinase; InterPro: IPR001564 Nucleoside diphosphate kinases (2.7.4.6 from EC) (NDK) are enzymes required for the synthesis of nucleoside triphosphates (NTP) other than ATP. They provide NTPs for nucleic acid synthesis, CTP for lipid synthesis, UTP for polysaccharide synthesis and GTP for protein elongation, signal transduction and microtubule polymerisation. In eukaryotes, there seems to be a small family of NDK isozymes each of which acts in a different subcellular compartment and/or has a distinct biological function. Eukaryotic NDK isozymes are hexamers of two highly related chains (A and B) []. By random association (A6, A5B...AB5, B6), these two kinds of chain form isoenzymes differing in their isoelectric point. NDK are proteins of 17 Kd that act via a ping-pong mechanism in which a histidine residue is phosphorylated, by transfer of the terminal phosphate group from ATP. In the presence of magnesium, the phosphoenzyme can transfer its phosphate group to any NDP, to produce an NTP. NDK isozymes have been sequenced from prokaryotic and eukaryotic sources. It has also been shown [] that the Drosophila awd (abnormal wing discs) protein, is a microtubule-associated NDK. Mammalian NDK is also known as metastasis inhibition factor nm23. The sequence of NDK has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism []. Our signature pattern contains this residue.; GO: 0004550 nucleoside diphosphate kinase activity, 0005524 ATP binding, 0006165 nucleoside diphosphate phosphorylation, 0006183 GTP biosynthetic process, 0006228 UTP biosynthetic process, 0006241 CTP biosynthetic process; PDB: 1S5Z_F 1NSP_A 1BUX_B 1HHQ_A 3FKB_A 1HLW_A 1LWX_B 1HIY_B 1B99_D 1MN9_A ....
Probab=100.00 E-value=1.2e-36 Score=231.86 Aligned_cols=116 Identities=41% Similarity=0.695 Sum_probs=104.4
Q ss_pred ceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCchh
Q psy6076 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNVI 103 (188)
Q Consensus 24 e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~naV 103 (188)
|+||+|||||++.++++|+||++|+++||+|+++||++|++++|++||..|.++++|+.++++|+|||+++|+|.|+|||
T Consensus 1 E~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~lv~~m~sgp~v~l~l~g~~av 80 (135)
T PF00334_consen 1 ERTLALIKPDAVARGHAGEIIDRLEEAGFEIVAMKMVQLTREEAREFYEEHKGKPFFDALVDFMSSGPSVALVLEGENAV 80 (135)
T ss_dssp EEEEEEE-HHHHHTT-HHHHHHHHHHHT-EEEEEEEEEETHHHHHHHTGGGTTSTTHHHHHHHHTSSEEEEEEEESTTHH
T ss_pred CeEEEEEChhHhhccchHHHHHHHHHcCCeeeehhhhhhhHHHHheEEEeecCCcceecccceeecCCcEEEEeecchhh
Confidence 79999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhh
Q psy6076 104 KVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCAL 139 (188)
Q Consensus 104 ~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~ 139 (188)
++||+++||+||+.|+|+|||++||.+..+|..|..
T Consensus 81 ~~~r~l~Gp~dp~~a~p~slR~~~g~~~~~N~vH~s 116 (135)
T PF00334_consen 81 EKWRQLCGPTDPEEAAPGSLRARYGTDIIRNAVHGS 116 (135)
T ss_dssp HHHHHHH--SSGGGSSTTSHHHHH-SSSTG-SEEE-
T ss_pred HHHHHhcCCcchhhhccccchhceeecCCCCeEECC
Confidence 999999999999999999999999999988854443
No 19
>smart00562 NDK These are enzymes that catalyze nonsubstrate specific conversions of nucleoside diphosphates to nucleoside triphosphates. These enzymes play important roles in bacterial growth, signal transduction and pathogenicity.
Probab=100.00 E-value=2.8e-36 Score=229.97 Aligned_cols=117 Identities=49% Similarity=0.837 Sum_probs=111.0
Q ss_pred ceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCchh
Q psy6076 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNVI 103 (188)
Q Consensus 24 e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~naV 103 (188)
|+|++|||||++.++++|+||++|+++||.|+++||++|++++|++||.+|.+++||++|+++|+|||+++|+|.|+|||
T Consensus 1 e~tl~iIKPda~~~~~~g~Il~~i~~~gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~m~sgp~~~l~l~g~nav 80 (135)
T smart00562 1 ERTLAIIKPDAVQRGLIGEIISRFERKGFKIVAMKMLQLTEELAEEFYAEHKGKPFFNDLVEFMTSGPVVAMVLEGEDAV 80 (135)
T ss_pred CeEEEEECchhhhcccHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHhcCCchHHHHHHHhhcCCeEEEEEecCCHH
Confidence 68999999999988889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhh
Q psy6076 104 KVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALY 140 (188)
Q Consensus 104 ~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~ 140 (188)
++||+++||++|..++|+|||++||.+..+|..|..+
T Consensus 81 ~~~r~l~Gp~~~~~~~p~slR~~~G~~~~~N~vH~sd 117 (135)
T smart00562 81 KTWRTLMGPTDPREAAPGTIRGDFGLDIGRNAVHGSD 117 (135)
T ss_pred HHHHHHhCCCChhhcCCcchHHhhcccccceeEECCC
Confidence 9999999999998889999999999998888544433
No 20
>PRK14544 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=7.7e-36 Score=237.00 Aligned_cols=111 Identities=45% Similarity=0.777 Sum_probs=105.7
Q ss_pred CCcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHh--------------------------
Q psy6076 21 PNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAAL-------------------------- 74 (188)
Q Consensus 21 ~~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~-------------------------- 74 (188)
+..|+||+|||||++.++++|+||++|+++||+|+++||+++|+++|++||.+|
T Consensus 1 ~~~E~TlviIKPdav~~~~~G~Il~ri~~~Gf~I~~~Km~~lt~e~a~~fY~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 80 (183)
T PRK14544 1 MPIERTLVILKPDAVKRGLVGEIISRFEKAGLKIVAMKMVKATPEQIERFYPSSEEWYRSVGNKLLKAYQELGIDPRARL 80 (183)
T ss_pred CCcceEEEEECchhhhcccHHHHHHHHHHCCCEEEEeEEecCCHHHHHHHHHHhhhhhhhhhhhhhhhhhhccccccccc
Confidence 357999999999999988999999999999999999999999999999999954
Q ss_pred -------cCCCchhhhhchhccCcEEEEEEeeCchhHHHHHHhCCCCCCCCCCCCcccchhhhh
Q psy6076 75 -------KDKPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLV 131 (188)
Q Consensus 75 -------~~~~~~~~lv~~mtsGp~val~l~g~naV~~~r~l~Gp~~~~~a~p~slRa~fg~~~ 131 (188)
.+++||++|++||+|||+++|++.|+|||++||+++||++|..|.|+|||+.||.+.
T Consensus 81 ~~~~~~~~gk~~~~~Lv~~m~Sgpvvalvl~g~naV~~~R~liGpt~p~~A~P~TIR~~fg~~~ 144 (183)
T PRK14544 81 GTDDPVEVGKKVKESLVKYMTSGPIVAMVLKGNRAVEVVRKLVGPTSPHKAPPGTIRGDYSIDS 144 (183)
T ss_pred ccccccccCCchhHHHHHHhccCCEEEEEEECCCHHHHHHHHhCCCCccccCCCCchhhhcccc
Confidence 679999999999999999999999999999999999999999999999999999873
No 21
>KOG0888|consensus
Probab=100.00 E-value=1e-35 Score=229.82 Aligned_cols=133 Identities=53% Similarity=0.850 Sum_probs=121.4
Q ss_pred cceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCch
Q psy6076 23 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNV 102 (188)
Q Consensus 23 ~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~na 102 (188)
.|+|+++||||++++|++|+||.+++++||+|+++|+++++++++++||.+|+++|||+.|+.||+|||++||+++|.||
T Consensus 5 ~e~tfi~iKpd~v~~~li~~ii~r~~~~gf~i~~~k~~~~s~~~~e~~Y~~~~~~~Ff~~Lv~~m~SGPvvamv~~g~~~ 84 (156)
T KOG0888|consen 5 LERTFILIKPDGVQRGLIGEIIKRFEDKGFKIVALKLVQLSKELLEEHYSDLKSKPFFPGLVEYMSSGPVVAMVLEGDNV 84 (156)
T ss_pred hhhhhheeCcchhhhhhhHHHHHHHHHcCcchhhheeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCcceehhhcCCCH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhCCCCCCCC---CCCCcccchhhhhhhhhhhhhhccCCCCCceeEEEEcCc
Q psy6076 103 IKVGRSMLGATNPADC---IPGTIRGDLCLLVCCLLQCALYATASPNKERTFIMIKPD 157 (188)
Q Consensus 103 V~~~r~l~Gp~~~~~a---~p~slRa~fg~~~~~n~~~~~~~~~~~~~e~Tl~iIKP~ 157 (188)
|+.||+++|||+|..| .|+|||++||.+..+|..|..++.++ .+|-++++.|+
T Consensus 85 V~~~r~llG~t~~~~a~~~~pgsir~~f~~~~~rn~~HgSDs~~s--A~rEi~~~F~~ 140 (156)
T KOG0888|consen 85 VQYWRALLGPTNPAAARAAAPGSIRGDFGVDDGRNSIHGSDSVES--AEREIKLWFPE 140 (156)
T ss_pred HHHHHHHhCCCCcccccccCCCCeeeeecccCCCCccccCCcHHH--HHHHHHhcCch
Confidence 9999999999999987 89999999999999986555554333 34556666665
No 22
>PLN02931 nucleoside diphosphate kinase family protein
Probab=98.97 E-value=6.3e-10 Score=88.43 Aligned_cols=46 Identities=33% Similarity=0.553 Sum_probs=42.3
Q ss_pred CCCCCceeEEEEcCcccccCcHHHHHHHHHHcCceEEEEEeeecCC
Q psy6076 143 ASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188 (188)
Q Consensus 143 ~~~~~e~Tl~iIKP~~v~~~~~g~I~~~i~~~gf~I~~~k~~~ls~ 188 (188)
.+...|+|||+||||+++++++|+|+++|+++||+|+++|+++||+
T Consensus 25 ~~~~~erTlalIKPdav~~~~~G~Il~~I~~~Gf~I~~~K~~~Lt~ 70 (177)
T PLN02931 25 GASEEERTLAMIKPDGLSGNYTERIKEVILESGFSIVKEMTTQLDE 70 (177)
T ss_pred CCCcceeEEEEECchhhhcccHHHHHHHHHHCCCEEEeeeeecCCH
Confidence 3446889999999999999999999999999999999999999984
No 23
>PLN02619 nucleoside-diphosphate kinase
Probab=98.84 E-value=2.1e-09 Score=88.59 Aligned_cols=44 Identities=61% Similarity=1.019 Sum_probs=41.4
Q ss_pred CCCceeEEEEcCcccccCcHHHHHHHHHHcCceEEEEEeeecCC
Q psy6076 145 PNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188 (188)
Q Consensus 145 ~~~e~Tl~iIKP~~v~~~~~g~I~~~i~~~gf~I~~~k~~~ls~ 188 (188)
...|+||++||||++++|++|+|+++|+++||+|+++|++++|+
T Consensus 86 ~~~ErTlaiIKPDaV~rglvGeII~rIe~~Gf~Iva~Kmv~Lt~ 129 (238)
T PLN02619 86 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKVVVPSK 129 (238)
T ss_pred chhceEEEEECcchhhcCchHHHHHHHHHCCCEEEehhhccCCH
Confidence 35789999999999999999999999999999999999999974
No 24
>smart00676 DM10 Domains in hypothetical proteins in Drosophila, C. elegans and mammals. Occurs singly in some nucleoside diphosphate kinases.
Probab=90.99 E-value=0.033 Score=40.54 Aligned_cols=16 Identities=19% Similarity=-0.118 Sum_probs=14.5
Q ss_pred CCcchhhhhhhhhhhc
Q psy6076 3 SKLLVCFLLQCALYAT 18 (188)
Q Consensus 3 ~~~~~g~~~~i~sr~~ 18 (188)
+||+||++|+||+|++
T Consensus 72 ~Dl~vG~~v~i~gr~f 87 (104)
T smart00676 72 SDLNVGTTINVFGRQF 87 (104)
T ss_pred HHcCCCCEEEEeCEEE
Confidence 5899999999999875
No 25
>COG1799 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.10 E-value=11 Score=29.80 Aligned_cols=48 Identities=10% Similarity=0.244 Sum_probs=38.8
Q ss_pred CCCcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHh
Q psy6076 20 SPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHY 71 (188)
Q Consensus 20 ~~~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y 71 (188)
......++++++|..+.. +-+|.+.|...-..+.++ ..|++++|++.-
T Consensus 69 ~~~~~s~iv~~ePr~yed--a~~ia~~lk~~k~Vvinl--~~m~~~qArRiv 116 (167)
T COG1799 69 AAQDSSKIVLLEPRKYED--AQEIADYLKNRKAVVINL--QRMDPAQARRIV 116 (167)
T ss_pred ccCCceEEEEecCccHHH--HHHHHHHHhcCceEEEEe--eeCCHHHHHHHH
Confidence 346678999999999998 789999998876666664 457899998874
No 26
>TIGR03738 PRTRC_C PRTRC system protein C. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein C.
Probab=64.81 E-value=5 Score=26.78 Aligned_cols=29 Identities=28% Similarity=0.475 Sum_probs=23.8
Q ss_pred eecCHHHHHHHhHHhcCCCchhhhhchhccCcEE
Q psy6076 60 VQADDKLLRTHYAALKDKPFFESLIKYMSSGPVV 93 (188)
Q Consensus 60 ~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~v 93 (188)
-.+|+++++.||+.. |++|...--+||.+
T Consensus 21 p~~spe~V~dfYs~~-----YPeLttA~v~gP~~ 49 (66)
T TIGR03738 21 PAMSPEQVRDFYSAQ-----YPELLNAEVEGPVV 49 (66)
T ss_pred CCCCHHHHHHHHhcc-----CchheeeeeeCCeE
Confidence 357999999999875 89998877788865
No 27
>PF14454 Prok_Ub: Prokaryotic Ubiquitin
Probab=61.86 E-value=8 Score=25.76 Aligned_cols=28 Identities=29% Similarity=0.401 Sum_probs=23.5
Q ss_pred ecCHHHHHHHhHHhcCCCchhhhhchhccCcEE
Q psy6076 61 QADDKLLRTHYAALKDKPFFESLIKYMSSGPVV 93 (188)
Q Consensus 61 ~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~v 93 (188)
.+|+++++.||+.. |++|...--.||.+
T Consensus 23 ~~spe~V~~~ya~~-----YPeL~tA~v~gP~v 50 (65)
T PF14454_consen 23 SLSPEEVRDFYAAQ-----YPELTTAEVEGPEV 50 (65)
T ss_pred CCCHHHHHHHHhhh-----ChhhheeeecCCeE
Confidence 47899999999876 89998887788865
No 28
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=50.11 E-value=29 Score=23.07 Aligned_cols=45 Identities=16% Similarity=0.308 Sum_probs=30.3
Q ss_pred EEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhc
Q psy6076 27 FIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALK 75 (188)
Q Consensus 27 l~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~ 75 (188)
+++++|..+.. +.+|.+.|.+....|.+ +-.|+.++++++.....
T Consensus 1 I~v~~p~~~~D--~~~i~~~l~~g~~Vivn--l~~l~~~~~~Ri~Dfl~ 45 (73)
T PF04472_consen 1 IVVFEPKSFED--AREIVDALREGKIVIVN--LENLDDEEAQRILDFLS 45 (73)
T ss_dssp -EEEE-SSGGG--HHHHHHHHHTT--EEEE---TTS-HHHHHHHHHHHH
T ss_pred CEEEeeCCHHH--HHHHHHHHHcCCEEEEE--CCCCCHHHHHHHHHHHh
Confidence 36889999988 88999999887666665 45678888887765443
No 29
>COG4996 Predicted phosphatase [General function prediction only]
Probab=40.49 E-value=30 Score=26.65 Aligned_cols=37 Identities=19% Similarity=0.391 Sum_probs=30.2
Q ss_pred EEEEcCcccccCcHHHHHHHH-HHcCceEEEEEeeecC
Q psy6076 151 FIMIKPDGVQRGLVGKIVQRF-EEKGFKLIAMKFVQAD 187 (188)
Q Consensus 151 l~iIKP~~v~~~~~g~I~~~i-~~~gf~I~~~k~~~ls 187 (188)
..+|+||..+...+-+++..| .+.|.+|+-.+.+-++
T Consensus 86 y~ViePhP~K~~ML~~llr~i~~er~~~ikP~~Ivy~D 123 (164)
T COG4996 86 YIVIEPHPYKFLMLSQLLREINTERNQKIKPSEIVYLD 123 (164)
T ss_pred EEEecCCChhHHHHHHHHHHHHHhhccccCcceEEEEe
Confidence 689999999888889999998 5678888877766554
No 30
>COG4996 Predicted phosphatase [General function prediction only]
Probab=38.92 E-value=25 Score=27.03 Aligned_cols=57 Identities=18% Similarity=0.274 Sum_probs=42.0
Q ss_pred hhhhhhhhhhc----------cCCCcceEEEEEcCccccCCchHHHHHHH-HHcCCeEEcEEeeecCH
Q psy6076 8 CFLLQCALYAT----------ASPNKERTFIMIKPDGVQRGLVGKIVQRF-EEKGFKLIAMKFVQADD 64 (188)
Q Consensus 8 g~~~~i~sr~~----------~~~~~e~Tl~lIKPd~~~~~~~g~Ii~~i-~~~Gf~I~~~k~~~ls~ 64 (188)
|++|+.+|-+. ++-..---+.+|+|+-++-..+-.+|.+| .+.|..|.-.+.+-++.
T Consensus 57 G~i~~~~sWN~~~kA~~aLral~~~~yFhy~ViePhP~K~~ML~~llr~i~~er~~~ikP~~Ivy~DD 124 (164)
T COG4996 57 GYILGLASWNFEDKAIKALRALDLLQYFHYIVIEPHPYKFLMLSQLLREINTERNQKIKPSEIVYLDD 124 (164)
T ss_pred CcEEEEeecCchHHHHHHHHHhchhhhEEEEEecCCChhHHHHHHHHHHHHHhhccccCcceEEEEec
Confidence 56666666555 44455567899999999876667888888 56788888888877764
No 31
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.44 E-value=54 Score=22.25 Aligned_cols=46 Identities=11% Similarity=0.340 Sum_probs=28.2
Q ss_pred cCCCcceEEEEEcCcc-ccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHh
Q psy6076 19 ASPNKERTFIMIKPDG-VQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHY 71 (188)
Q Consensus 19 ~~~~~e~Tl~lIKPd~-~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y 71 (188)
......+.++.+.=.. ..+ ..++++.|+++|+.+.. ++.+++.+++
T Consensus 35 ~~~~~~~v~i~ie~~~~~~~--~~~i~~~L~~~G~~~~~-----~~~~~~~~~~ 81 (85)
T cd04906 35 ADEKDAHIFVGVSVANGAEE--LAELLEDLKSAGYEVVD-----LSDDELAKTH 81 (85)
T ss_pred cCCCeeEEEEEEEeCCcHHH--HHHHHHHHHHCCCCeEE-----CCCCHHHHHH
Confidence 3333334444455332 333 67999999999998764 6666665554
No 32
>KOG4132|consensus
Probab=33.11 E-value=3e+02 Score=23.17 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=50.7
Q ss_pred eEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCchhH
Q psy6076 25 RTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNVIK 104 (188)
Q Consensus 25 ~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~naV~ 104 (188)
.|+.++|-+.... ....+.++..||+-+-+-..+...-...+|-+....-+-|. .+++..+.+|+
T Consensus 4 ~~vlllK~~s~~~---D~Y~~~l~~~~~epifIP~l~f~f~~l~~lr~kL~~p~kY~------------giIfTSpR~VE 68 (260)
T KOG4132|consen 4 VTVLLLKNKSVPI---DPYEEELRSYGLEPIFIPVLSFTFVNLQQLRAKLNNPPKYA------------GIIFTSPRCVE 68 (260)
T ss_pred eeEEEecCCCCCC---CHHHHHHHhcCCCceeecceeeeeccHHHHHHHhcCchhhc------------eeEEeChHHHH
Confidence 5888999887663 57788899999987766555544433444433333222232 27788899999
Q ss_pred HHHHHhCCCC
Q psy6076 105 VGRSMLGATN 114 (188)
Q Consensus 105 ~~r~l~Gp~~ 114 (188)
.+.+-++++.
T Consensus 69 a~~eaL~q~~ 78 (260)
T KOG4132|consen 69 ALNEALIQTE 78 (260)
T ss_pred HHHHHhcccc
Confidence 9999998773
No 33
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=32.81 E-value=36 Score=24.89 Aligned_cols=17 Identities=29% Similarity=0.618 Sum_probs=15.7
Q ss_pred CHHHHHHHhHHhcCCCc
Q psy6076 63 DDKLLRTHYAALKDKPF 79 (188)
Q Consensus 63 s~~~a~~~y~~~~~~~~ 79 (188)
+.+.|.+||.++.|++|
T Consensus 63 ~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 63 DQESADEFYEEFNGKPF 79 (110)
T ss_pred CHHHHHHHHHHhCCCcc
Confidence 78889999999999987
No 34
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=31.48 E-value=41 Score=29.26 Aligned_cols=46 Identities=20% Similarity=0.419 Sum_probs=37.1
Q ss_pred EEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhc
Q psy6076 28 IMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALK 75 (188)
Q Consensus 28 ~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~ 75 (188)
=+|-|..+-.|++|.|-+.|.++|| .+.-.+.-+..-|..||..++
T Consensus 152 DiVAPSdMMDGrV~aIR~aLd~~g~--~~v~ImsYsaKyaSafYGPFR 197 (314)
T cd00384 152 DIVAPSDMMDGRVAAIREALDEAGF--SDVPIMSYSAKYASAFYGPFR 197 (314)
T ss_pred CeeecccccccHHHHHHHHHHHCCC--CCCceeecHHHhhhhccchHH
Confidence 3678888888999999999999999 456667778888888886543
No 35
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=31.38 E-value=51 Score=28.76 Aligned_cols=45 Identities=22% Similarity=0.516 Sum_probs=37.5
Q ss_pred EEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhc
Q psy6076 29 MIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALK 75 (188)
Q Consensus 29 lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~ 75 (188)
+|-|..+-.|++|.|-+.|.++||. +.-.+.-+..-|..||..++
T Consensus 161 iVAPSdMMDGrV~aIR~aLd~~g~~--~v~ImSYsaKyaS~fYGPFR 205 (323)
T PRK09283 161 IVAPSDMMDGRVGAIREALDEAGFT--DVPIMSYSAKYASAFYGPFR 205 (323)
T ss_pred EEEcccccccHHHHHHHHHHHCCCC--CCceeecHHHHHHhhhHHHH
Confidence 6778888889999999999999994 56677778889999997654
No 36
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=27.21 E-value=57 Score=28.46 Aligned_cols=45 Identities=22% Similarity=0.491 Sum_probs=36.7
Q ss_pred EEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhc
Q psy6076 29 MIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALK 75 (188)
Q Consensus 29 lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~ 75 (188)
+|-|..+-.|++|.|-+.|.++||. +.-.+.-+..-|..||..++
T Consensus 163 iVAPSdMMDGrV~aIR~aLd~~g~~--~v~ImSYsaKyaS~fYGPFR 207 (322)
T PRK13384 163 MLAPSAMMDGQVKAIRQGLDAAGFE--HVAILAHSAKFASSFYGPFR 207 (322)
T ss_pred eEecccccccHHHHHHHHHHHCCCC--CCceeehhHhhhhhhcchHH
Confidence 6778888889999999999999994 46667778888888886654
No 37
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=26.05 E-value=68 Score=22.16 Aligned_cols=26 Identities=19% Similarity=0.562 Sum_probs=20.6
Q ss_pred ccccCcHHHHHHHHHHcCceEEEEEee
Q psy6076 158 GVQRGLVGKIVQRFEEKGFKLIAMKFV 184 (188)
Q Consensus 158 ~v~~~~~g~I~~~i~~~gf~I~~~k~~ 184 (188)
||+++ +..|-+.|++.||+++.++.-
T Consensus 5 AVE~~-Ls~v~~~L~~~GyeVv~l~~~ 30 (80)
T PF03698_consen 5 AVEEG-LSNVKEALREKGYEVVDLENE 30 (80)
T ss_pred EecCC-chHHHHHHHHCCCEEEecCCc
Confidence 56666 468999999999999987643
No 38
>PF06130 PduL: Propanediol utilisation protein PduL; InterPro: IPR008300 Salmonella enterica subsp. enterica serovar Typhimurium degrades 1,2-propanediol by a pathway that requires coenzyme B12, adenosylcobalamin (AdoCbl). Proteins required for 1,2-propanediol degradation are encoded by the pdu operon []. PduL functions in this pathway, but its exact role is not yet determined. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilization of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilization (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and coregulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR010254 from INTERPRO and IPR009204 from INTERPRO for more details on the propanediol utilization pathway and the pdu operon.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=25.71 E-value=54 Score=22.13 Aligned_cols=20 Identities=5% Similarity=0.203 Sum_probs=17.7
Q ss_pred eEEcEEeeecCHHHHHHHhH
Q psy6076 53 KLIAMKFVQADDKLLRTHYA 72 (188)
Q Consensus 53 ~I~~~k~~~ls~~~a~~~y~ 72 (188)
.|+..|-++||+++|+.|+-
T Consensus 4 viva~RHIHms~~da~~l~~ 23 (71)
T PF06130_consen 4 VIVAARHIHMSPEDAEKLFG 23 (71)
T ss_pred EEEEccccCCCHHHHHHhCC
Confidence 57788999999999999974
No 39
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=25.46 E-value=1.4e+02 Score=27.45 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=11.6
Q ss_pred HHHHHHHHHHcCceEEE
Q psy6076 164 VGKIVQRFEEKGFKLIA 180 (188)
Q Consensus 164 ~g~I~~~i~~~gf~I~~ 180 (188)
.....+.+.+.||....
T Consensus 472 ~~~~~~~~~~~~~~~~~ 488 (499)
T TIGR01124 472 PDQFEQFLAELGYRYHD 488 (499)
T ss_pred HHHHHHHHHHcCCCeEE
Confidence 46677778888876543
No 40
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=25.32 E-value=56 Score=28.50 Aligned_cols=45 Identities=18% Similarity=0.499 Sum_probs=35.8
Q ss_pred EEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhc
Q psy6076 29 MIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALK 75 (188)
Q Consensus 29 lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~ 75 (188)
+|-|..+-.|++|.|-+.|.++||. +.-.+.-+..-|..||..++
T Consensus 158 iVAPSdMMDGrV~aIR~aLd~~g~~--~v~ImSYsaKyaS~fYGPFR 202 (320)
T cd04823 158 IVAPSDMMDGRIGAIREALDAEGFT--NVSILSYAAKYASAFYGPFR 202 (320)
T ss_pred EEEcccchhhHHHHHHHHHHHCCCC--CCceeechHHhhhhccchhH
Confidence 6778877788999999999999994 45666778888888885543
No 41
>KOG2738|consensus
Probab=25.20 E-value=12 Score=32.51 Aligned_cols=51 Identities=18% Similarity=0.343 Sum_probs=36.2
Q ss_pred Ccchhhhhhhhhhhc---cCCCcceEEEEEcCccccCCchHHHHHHH-HHcCCeEEc
Q psy6076 4 KLLVCFLLQCALYAT---ASPNKERTFIMIKPDGVQRGLVGKIVQRF-EEKGFKLIA 56 (188)
Q Consensus 4 ~~~~g~~~~i~sr~~---~~~~~e~Tl~lIKPd~~~~~~~g~Ii~~i-~~~Gf~I~~ 56 (188)
.+|+|. |.=-+|+| .....++.++++||.+--+ .+|+||++. .++||.++.
T Consensus 221 TffvG~-Vde~~k~LVkvT~EcL~kaI~~~kpGv~fr-eiG~iI~kha~~~g~sVVr 275 (369)
T KOG2738|consen 221 TFFVGN-VDEKAKKLVKVTRECLEKAIAIVKPGVSFR-EIGNIIQKHATKNGYSVVR 275 (369)
T ss_pred ceEeec-cCHHHHHHHHHHHHHHHHHHHHhCCchhHH-HHHHHHHHHhhhcCceeeh
Confidence 345665 55556666 3345678899999997544 389999987 678988774
No 42
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=23.56 E-value=3.7e+02 Score=22.62 Aligned_cols=75 Identities=15% Similarity=0.262 Sum_probs=45.0
Q ss_pred ceEEEEEcCcc-ccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCc-EEEEEEeeCc
Q psy6076 24 ERTFIMIKPDG-VQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGP-VVPMVWEGLN 101 (188)
Q Consensus 24 e~Tl~lIKPd~-~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp-~val~l~g~n 101 (188)
.+.++++-++. +.+.....+.+.+++.|.+++....+..+..+.. +.+.+...+|| ++.+...+.+
T Consensus 138 ~~~v~ii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~s------------~~i~~i~~~~~d~v~~~~~~~~ 205 (347)
T cd06335 138 FKKVALLLDNTGWGRSNRKDLTAALAARGLKPVAVEWFNWGDKDMT------------AQLLRAKAAGADAIIIVGNGPE 205 (347)
T ss_pred CCeEEEEeccCchhhhHHHHHHHHHHHcCCeeEEEeeecCCCccHH------------HHHHHHHhCCCCEEEEEecChH
Confidence 46778887764 4444566777888899999987666655432222 22233345677 4444445666
Q ss_pred hhHHHHHHh
Q psy6076 102 VIKVGRSML 110 (188)
Q Consensus 102 aV~~~r~l~ 110 (188)
++.-++++-
T Consensus 206 ~~~~~~~~~ 214 (347)
T cd06335 206 GAQIANGMA 214 (347)
T ss_pred HHHHHHHHH
Confidence 766665543
No 43
>KOG0328|consensus
Probab=22.39 E-value=1.8e+02 Score=25.46 Aligned_cols=30 Identities=17% Similarity=0.382 Sum_probs=26.2
Q ss_pred CCchHHHHHHHHHcCCeEEcEEeeecCHHH
Q psy6076 37 RGLVGKIVQRFEEKGFKLIAMKFVQADDKL 66 (188)
Q Consensus 37 ~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~ 66 (188)
.|-.|.|+++|+...++-.+.||..|++.+
T Consensus 150 sGtPGrv~dmikr~~L~tr~vkmlVLDEaD 179 (400)
T KOG0328|consen 150 SGTPGRVLDMIKRRSLRTRAVKMLVLDEAD 179 (400)
T ss_pred eCCCchHHHHHHhccccccceeEEEeccHH
Confidence 345799999999999999999999998764
No 44
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.36 E-value=1.8e+02 Score=18.19 Aligned_cols=31 Identities=6% Similarity=0.427 Sum_probs=22.3
Q ss_pred CcceEEEEEcCccccCCchHHHHHHHHHcCCeEE
Q psy6076 22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLI 55 (188)
Q Consensus 22 ~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~ 55 (188)
..+.+.++|.-+... ..++++.|+++||++.
T Consensus 39 ~~~~~~v~i~v~~~~---~~~~~~~L~~~G~~v~ 69 (72)
T cd04883 39 EEDNKILVFRVQTMN---PRPIIEDLRRAGYEVL 69 (72)
T ss_pred CCCeEEEEEEEecCC---HHHHHHHHHHCCCeee
Confidence 345777777766522 4588899999999876
No 45
>PRK03094 hypothetical protein; Provisional
Probab=21.90 E-value=99 Score=21.42 Aligned_cols=25 Identities=24% Similarity=0.655 Sum_probs=19.7
Q ss_pred ccccCcHHHHHHHHHHcCceEEEEEe
Q psy6076 158 GVQRGLVGKIVQRFEEKGFKLIAMKF 183 (188)
Q Consensus 158 ~v~~~~~g~I~~~i~~~gf~I~~~k~ 183 (188)
+|+.++ ..|-+.|++.||+++.++-
T Consensus 5 aVE~~L-s~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 5 GVEQSL-TDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred EeecCc-HHHHHHHHHCCCEEEecCc
Confidence 566664 5588999999999988764
No 46
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=21.79 E-value=2e+02 Score=21.41 Aligned_cols=43 Identities=21% Similarity=0.424 Sum_probs=26.9
Q ss_pred EEEEEcCccccCCchHHHHH-HHHHcCCeEEcEEeeecCHHHHHHH
Q psy6076 26 TFIMIKPDGVQRGLVGKIVQ-RFEEKGFKLIAMKFVQADDKLLRTH 70 (188)
Q Consensus 26 Tl~lIKPd~~~~~~~g~Ii~-~i~~~Gf~I~~~k~~~ls~~~a~~~ 70 (188)
-++-+++|....|. +++. .|+..||++...-...-.++-++..
T Consensus 6 ~~a~~g~D~Hd~g~--~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa 49 (132)
T TIGR00640 6 LVAKMGQDGHDRGA--KVIATAYADLGFDVDVGPLFQTPEEIARQA 49 (132)
T ss_pred EEEeeCCCccHHHH--HHHHHHHHhCCcEEEECCCCCCHHHHHHHH
Confidence 34566777665431 3554 4588999999988775444444444
No 47
>PF02700 PurS: Phosphoribosylformylglycinamidine (FGAM) synthase; InterPro: IPR003850 Phosphoribosylformylglycinamidine(FGAM) synthetase, 6.3.5.3 from EC, catalyses the fourth step in the de novo purine biosynthetic pathway []. 5-phosphoribosylformylglycinamide (FGAR) + glutamine + ATP = FGAM + glutamate + ADP + Pi In eukaryotes and many bacterial systems (including Escherichia coli and Salmonella typhimurium), the FGAM synthetase is encoded by the large form of PurL (lgPurL), which contains an N-terminal ATPase domain and a C-terminal glutamine-binding domain. In archaeal and other bacterial systems, however, FGAM synthetase is encoded by separate genes, making it a multisubunit (rather than multidomain) enzyme. The protein is composed of the small form of PurL (smPurL), which is homologus to the ATPase domain of lgPurL, PurQ which is homologous to the glutamine-binding domain of of lgPurL, and PurS, whose function is not known. This entry represents the PurS subunit of the multisubunit FGAM synthetase. Recent studies showed that disruption of the purS gene in Bacillus subtilis resulted in a purine auxotrophic phenotype, due to defective FGAM synthetase activity. Therefore, the PurS protein appears to be required for the function of the PurL and PurQ subunits of the FGAM synthetase, but the molecular mechanism for the functional role of PurS is currently not known. For additional information please see [, ].; GO: 0016879 ligase activity, forming carbon-nitrogen bonds; PDB: 2ZW2_B 3D54_B 1VQ3_B 1GTD_A 2YX5_A 2CUW_A 1TWJ_B 1T4A_B 2DGB_B.
Probab=21.75 E-value=2.7e+02 Score=18.96 Aligned_cols=32 Identities=16% Similarity=0.387 Sum_probs=20.1
Q ss_pred EEEEEcCccccCCchHH-HHHHHHHcCCe-EEcEEe
Q psy6076 26 TFIMIKPDGVQRGLVGK-IVQRFEEKGFK-LIAMKF 59 (188)
Q Consensus 26 Tl~lIKPd~~~~~~~g~-Ii~~i~~~Gf~-I~~~k~ 59 (188)
-.+..||..... -|+ |.+.+..-||. |...|.
T Consensus 5 V~V~~K~gvlDP--qG~ai~~al~~lG~~~v~~Vr~ 38 (80)
T PF02700_consen 5 VEVTLKPGVLDP--QGEAIKRALHRLGYDGVKDVRV 38 (80)
T ss_dssp EEEEE-TTS--H--HHHHHHHHHHHTT-TTEEEEEE
T ss_pred EEEEECCCCcCc--HHHHHHHHHHHcCCcccCcEEE
Confidence 467789988875 566 55667888988 777665
No 48
>PRK12483 threonine dehydratase; Reviewed
Probab=21.44 E-value=2.1e+02 Score=26.67 Aligned_cols=58 Identities=22% Similarity=0.355 Sum_probs=0.0
Q ss_pred hHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccC--c------EEEEEE-eeCchhHHHHHHh
Q psy6076 40 VGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSG--P------VVPMVW-EGLNVIKVGRSML 110 (188)
Q Consensus 40 ~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsG--p------~val~l-~g~naV~~~r~l~ 110 (188)
..+|++.|+++||.+..+ +.++..+++ +.||..| | +.+..+ +.+++..++-+.+
T Consensus 399 ~~~i~~~l~~~g~~~~dl-----sdne~~k~h------------~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l 461 (521)
T PRK12483 399 RAQLLASLRAQGFPVLDL-----TDDELAKLH------------IRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRL 461 (521)
T ss_pred HHHHHHHHHHCCCCeEEC-----CCCHHHHHH------------HHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHh
Q ss_pred CC-CC
Q psy6076 111 GA-TN 114 (188)
Q Consensus 111 Gp-~~ 114 (188)
|| ++
T Consensus 462 ~~~~n 466 (521)
T PRK12483 462 GPRWN 466 (521)
T ss_pred CCCcc
No 49
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=20.80 E-value=1e+02 Score=26.91 Aligned_cols=46 Identities=24% Similarity=0.522 Sum_probs=0.0
Q ss_pred EEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcC
Q psy6076 29 MIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKD 76 (188)
Q Consensus 29 lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~ 76 (188)
+|-|..+-.|.++.|-+.|.++||. +.-.+.-+..-|..||..+++
T Consensus 166 ivAPSdMMDGrV~aIR~aLd~ag~~--~v~IMsYsaKyASafYGPFRd 211 (330)
T COG0113 166 IVAPSDMMDGRVGAIREALDEAGFI--DVPIMSYSAKYASAFYGPFRD 211 (330)
T ss_pred eecccccccchHHHHHHHHHHcCCC--cceeeehhHHHhhhccccHHH
No 50
>PRK09224 threonine dehydratase; Reviewed
Probab=20.53 E-value=2.4e+02 Score=25.99 Aligned_cols=17 Identities=12% Similarity=0.171 Sum_probs=11.9
Q ss_pred HHHHHHHHHHcCceEEE
Q psy6076 164 VGKIVQRFEEKGFKLIA 180 (188)
Q Consensus 164 ~g~I~~~i~~~gf~I~~ 180 (188)
..++.+.+.+.||....
T Consensus 476 ~~~~~~~l~~~~~~~~~ 492 (504)
T PRK09224 476 EPEFEAFLDELGYPYWD 492 (504)
T ss_pred HHHHHHHHHHcCCCeEE
Confidence 46777788888876543
No 51
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=20.38 E-value=5.1e+02 Score=21.84 Aligned_cols=42 Identities=12% Similarity=0.222 Sum_probs=28.1
Q ss_pred cceEEEEEcCcc-ccCCchHHHHHHHHHcCCeEEcEEeeecCH
Q psy6076 23 KERTFIMIKPDG-VQRGLVGKIVQRFEEKGFKLIAMKFVQADD 64 (188)
Q Consensus 23 ~e~Tl~lIKPd~-~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~ 64 (188)
.-+++++|-+|. +-+.....+-+.+++.|++|+....+....
T Consensus 132 g~k~vaii~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~ 174 (348)
T cd06355 132 GGKRFYLVGSDYVYPRTANKILKAQLESLGGEVVGEEYLPLGH 174 (348)
T ss_pred CCCeEEEECCcchHHHHHHHHHHHHHHHcCCeEEeeEEecCCh
Confidence 358899998883 443333445566788999999766555443
Done!