Query psy6076
Match_columns 188
No_of_seqs 177 out of 1650
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 17:02:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6076.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6076hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hr2_A Nucleoside diphosphate 100.0 6E-44 2.1E-48 273.4 7.0 121 21-141 5-125 (145)
2 3evo_A NDP kinase, NDK, nucleo 100.0 1.3E-42 4.4E-47 266.6 6.6 121 21-141 4-125 (146)
3 3mpd_A Nucleoside diphosphate 100.0 1.6E-42 5.6E-47 267.3 6.5 120 22-141 4-123 (151)
4 4fkx_A NDK B, nucleoside dipho 100.0 1.7E-42 5.8E-47 269.3 6.2 122 19-140 7-128 (161)
5 3q8u_A Nucleoside diphosphate 100.0 2.4E-42 8.2E-47 267.7 6.9 118 23-140 1-118 (157)
6 1wkj_A Nucleoside diphosphate 100.0 2.5E-42 8.5E-47 262.8 6.5 119 23-141 1-119 (137)
7 1k44_A Nucleoside diphosphate 100.0 3.7E-42 1.3E-46 261.5 6.9 119 23-141 2-121 (136)
8 3fkb_A NDP kinase, NDK, nucleo 100.0 3E-42 1E-46 266.8 6.3 120 21-140 6-125 (155)
9 3l7u_A Nucleoside diphosphate 100.0 3.9E-42 1.3E-46 269.7 6.6 122 19-140 20-141 (172)
10 3ztp_A Nucleoside diphosphate 100.0 1.4E-42 4.8E-47 265.5 3.5 120 22-141 2-124 (142)
11 2hur_A NDK, nucleoside diphosp 100.0 6.2E-42 2.1E-46 261.9 6.6 119 23-141 2-120 (142)
12 3r9l_A Nucleoside diphosphate 100.0 2.4E-42 8.3E-47 267.3 3.6 120 21-140 5-124 (155)
13 1nhk_R Nucleoside diphosphate 100.0 6.8E-42 2.3E-46 262.2 5.8 118 23-140 2-119 (144)
14 1xiq_A Nucleoside diphosphate 100.0 9.9E-42 3.4E-46 264.4 6.6 121 20-140 6-126 (157)
15 2vu5_A Nucleoside diphosphate 100.0 7E-42 2.4E-46 263.3 5.6 118 23-140 1-118 (148)
16 3b54_A NDK, NDP kinase, nucleo 100.0 4.4E-42 1.5E-46 267.4 4.5 123 18-140 8-130 (161)
17 1pku_A Nucleoside diphosphate 100.0 1E-41 3.6E-46 262.8 5.9 119 23-141 2-120 (150)
18 1s57_A Nucleoside diphosphate 100.0 1.7E-41 5.8E-46 262.4 7.0 119 22-140 4-122 (153)
19 1u8w_A Nucleoside diphosphate 100.0 1.1E-41 3.8E-46 262.4 5.8 119 23-141 1-119 (149)
20 2az3_A Nucleoside diphosphate 100.0 2.7E-41 9.4E-46 263.6 7.1 125 19-143 4-128 (164)
21 3bbb_A Nucleoside diphosphate 100.0 2.1E-41 7.1E-46 261.4 6.2 119 22-140 2-120 (151)
22 1ehw_A NDPK H4, nucleoside dip 100.0 2.2E-41 7.7E-46 263.5 6.0 120 22-141 23-142 (162)
23 3js9_A Nucleoside diphosphate 100.0 2.2E-41 7.7E-46 262.0 5.9 121 20-140 6-126 (156)
24 1zs6_A Nucleoside diphosphate 100.0 3.2E-41 1.1E-45 264.4 6.3 122 19-140 17-138 (169)
25 1nb2_A Nucleoside diphosphate 100.0 1.1E-41 3.8E-46 262.7 3.5 118 23-140 2-119 (150)
26 1w7w_A Nucleoside diphosphate 100.0 3.9E-41 1.3E-45 266.5 6.7 122 19-140 28-149 (182)
27 2dxe_A Nucleoside diphosphate 100.0 3.3E-41 1.1E-45 262.5 5.4 120 22-141 6-128 (160)
28 4dz6_A Nucleoside diphosphate 100.0 2.1E-41 7.3E-46 269.2 3.7 128 13-140 16-158 (190)
29 1xqi_A Nucleoside diphosphate 100.0 2.9E-38 1E-42 252.7 4.1 121 21-141 13-176 (195)
30 3bh7_B Protein XRP2; protein-p 99.9 1.8E-25 6.2E-30 192.8 9.1 92 19-115 231-322 (352)
31 1w7w_A Nucleoside diphosphate 99.1 3.7E-11 1.3E-15 94.7 3.9 52 137-188 20-73 (182)
32 3b54_A NDK, NDP kinase, nucleo 99.0 9.4E-11 3.2E-15 90.8 3.7 44 145-188 11-54 (161)
33 3l7u_A Nucleoside diphosphate 99.0 1.2E-10 4E-15 91.0 3.5 43 146-188 23-65 (172)
34 4dz6_A Nucleoside diphosphate 99.0 1.5E-10 5.1E-15 91.8 3.7 45 144-188 23-67 (190)
35 1ehw_A NDPK H4, nucleoside dip 99.0 1.7E-10 6E-15 89.3 3.9 43 146-188 23-65 (162)
36 1zs6_A Nucleoside diphosphate 99.0 2.4E-10 8.1E-15 89.2 3.5 44 145-188 19-62 (169)
37 3bh7_B Protein XRP2; protein-p 98.6 3.6E-08 1.2E-12 84.9 4.4 44 145-188 233-276 (352)
38 2z14_A EF-hand domain-containi 88.2 0.068 2.3E-06 39.6 -0.8 16 3-18 87-102 (133)
39 3p04_A Uncharacterized BCR; SE 76.9 2.1 7.2E-05 29.2 3.2 46 24-73 4-49 (87)
40 3i5g_C Myosin catalytic light 22.4 39 0.0013 24.2 1.8 32 61-92 117-154 (159)
No 1
>4hr2_A Nucleoside diphosphate kinase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: ADP; 1.95A {Burkholderia thailandensis} PDB: 4dut_A* 4ek2_A*
Probab=100.00 E-value=6e-44 Score=273.42 Aligned_cols=121 Identities=35% Similarity=0.577 Sum_probs=116.4
Q ss_pred CCcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeC
Q psy6076 21 PNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGL 100 (188)
Q Consensus 21 ~~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~ 100 (188)
+..|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||++||+|+|+
T Consensus 5 m~~ErTl~iIKPDav~~~l~g~Ii~rie~~Gf~I~~~k~~~lt~e~a~~fY~~h~~kpff~~Lv~~mtSGPvva~vleg~ 84 (145)
T 4hr2_A 5 MALERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLSRADAEKFYAVHAERPFFKDLVEFMISGPVMIQVLEGE 84 (145)
T ss_dssp CCEEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEE
T ss_pred chHHHeEEEEChHHhhcCCHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEEEEcC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhhc
Q psy6076 101 NVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA 141 (188)
Q Consensus 101 naV~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~~ 141 (188)
|||+.||+++|||||..|+|+|||++||.+..+|+.|..++
T Consensus 85 ~aV~~~R~l~G~tdp~~A~pgtIR~~fg~~~~~N~vHgSDs 125 (145)
T 4hr2_A 85 DAILKNRDLMGATDPKKAEKGTIRADFADSIDANAVHGSDA 125 (145)
T ss_dssp THHHHHHHHHCCSSTTTSCTTSHHHHHCSBTTBCSEEECCS
T ss_pred CcHhHHhhccCCCCcccCCCCCcHHHhcCCcCccceECCCC
Confidence 99999999999999999999999999999999997665554
No 2
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase nucleotide binding, ATP-binding, magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga mimivirus} SCOP: d.58.6.1 PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A* 3gpa_A* ...
Probab=100.00 E-value=1.3e-42 Score=266.59 Aligned_cols=121 Identities=37% Similarity=0.647 Sum_probs=114.2
Q ss_pred CCcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeec-CHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEee
Q psy6076 21 PNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQA-DDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEG 99 (188)
Q Consensus 21 ~~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~l-s~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g 99 (188)
...|+||+|||||+++++++|+||++|+++||.|+++||++| |+++|++||.+|+++|||++|++||+|||++||+|+|
T Consensus 4 ~~~e~Tl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~l~s~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg 83 (146)
T 3evo_A 4 AGLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEG 83 (146)
T ss_dssp --CEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEESSCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEE
T ss_pred CcceeEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEeccCCHHHHHHHHHHHcCCccHHHHHHHHhcCCeEEEEEeC
Confidence 457999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred CchhHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhhc
Q psy6076 100 LNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA 141 (188)
Q Consensus 100 ~naV~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~~ 141 (188)
+|||+.||+++|||||..|+|+|||++||.+..+|+.|..++
T Consensus 84 ~naV~~~R~l~G~t~p~~A~pgtiR~~fg~~~~~N~vHgSDs 125 (146)
T 3evo_A 84 TDAISKIRRLQGNTNPLASAPGTIRGDLANDIRENLIHASDS 125 (146)
T ss_dssp TTHHHHHHHHHCCSSTTTCCTTSHHHHHCCSSSCCSEEECCS
T ss_pred CCHHHHHHHHcCCCCcccCCCCChHHHhCCCccceeEEeCCC
Confidence 999999999999999999999999999999998886555443
No 3
>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, encepha cuniculi, structural genomics; 2.08A {Encephalitozoon cuniculi} SCOP: d.58.6.0
Probab=100.00 E-value=1.6e-42 Score=267.34 Aligned_cols=120 Identities=43% Similarity=0.725 Sum_probs=114.2
Q ss_pred CcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCc
Q psy6076 22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLN 101 (188)
Q Consensus 22 ~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~n 101 (188)
..|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||++||+|+|+|
T Consensus 4 ~~erTl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~n 83 (151)
T 3mpd_A 4 SMERTFIMIKPDAIKRRLISRIIQRFEEKGLYLAASKCVIPKREVLETHYSHLSSMPFFSEMVEDMMSGMVLAMVWVGKD 83 (151)
T ss_dssp -CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTT
T ss_pred ceEEEEEEEChhHhhcCcHHHHHHHHHHCCCEEEEEEEEcCCHHHHHHHHHHHcCCccHHHHHHHhcCCCEEEEEEeCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhhc
Q psy6076 102 VIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA 141 (188)
Q Consensus 102 aV~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~~ 141 (188)
||+.||+++|||||..|+|+|||++||.+..+|..|..++
T Consensus 84 aV~~~R~l~G~t~p~~a~PgtiR~~fg~~~~~N~vHgSDs 123 (151)
T 3mpd_A 84 AVSIGRKLIGETNPQAASVGTIRGDYGVSTGKNIIHGSDC 123 (151)
T ss_dssp HHHHHHHHHCCSSTTTSCTTSHHHHHCCSSTTCSEEECSS
T ss_pred HHHHHHHHhCCCChhhcCCCChhHHhCCCccceeEEeCCC
Confidence 9999999999999999999999999999998986555443
No 4
>4fkx_A NDK B, nucleoside diphosphate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CDP; 1.70A {Trypanosoma brucei brucei} PDB: 4fky_A* 4f4a_A* 4f36_A* 3prv_A 3ngs_A 3ngr_A 3ngt_A* 3ngu_A*
Probab=100.00 E-value=1.7e-42 Score=269.26 Aligned_cols=122 Identities=52% Similarity=0.917 Sum_probs=115.2
Q ss_pred cCCCcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEe
Q psy6076 19 ASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWE 98 (188)
Q Consensus 19 ~~~~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~ 98 (188)
..+..|+||+|||||++++|++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||++||+|+
T Consensus 7 ~~~~~~rTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvle 86 (161)
T 4fkx_A 7 HHMPSERTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLLQPTEEQAKQHYIDLASKPFYSGLVSYFSSGPIVGMVWE 86 (161)
T ss_dssp --CTTCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEE
T ss_pred cCCCcccEEEEECHHHhccCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCccHHHHHHHHhCCCcEEEEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCchhHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhh
Q psy6076 99 GLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALY 140 (188)
Q Consensus 99 g~naV~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~ 140 (188)
|+|||+.||+++|||||..|+|+|||++||.+..+|..|..+
T Consensus 87 g~naV~~~R~l~GpTdp~~A~PgTIR~~fg~~~~~N~vHgSD 128 (161)
T 4fkx_A 87 GLGVVKGGRVLLGATNPADSLPGTIRGDFAVDVGRNVCHGSD 128 (161)
T ss_dssp STTHHHHHHHHHCCSSGGGCCTTSHHHHHCCBTTBCCEEECS
T ss_pred ccChHHHHHHHhcCCChhhcCCCChhHhhCCCccceeEEeCC
Confidence 999999999999999999999999999999999888654444
No 5
>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta protein family; HET: ADP; 2.22A {Staphylococcus aureus subsp} PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A*
Probab=100.00 E-value=2.4e-42 Score=267.71 Aligned_cols=118 Identities=45% Similarity=0.778 Sum_probs=113.1
Q ss_pred cceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCch
Q psy6076 23 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNV 102 (188)
Q Consensus 23 ~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~na 102 (188)
+|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||++||+|+|+||
T Consensus 1 mErTl~iIKPDav~~~~~G~Ii~~ie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~na 80 (157)
T 3q8u_A 1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDA 80 (157)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred CceEEEEEChHHhhcCCHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHCCCccHHHHHHHhcCCCEEEEEEeCCCH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhh
Q psy6076 103 IKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALY 140 (188)
Q Consensus 103 V~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~ 140 (188)
|+.||+++|||||..|+|+|||++||.+..+|..|..+
T Consensus 81 V~~~R~l~GpTdp~~A~PgtIR~~fg~~~~~N~vHgSD 118 (157)
T 3q8u_A 81 VNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSD 118 (157)
T ss_dssp HHHHHHHHCCSSTTTSCTTSHHHHHCCBTTBCSEEECS
T ss_pred HHHHHHHcCCCChhhcCCCChHHHhCCCCCCeeEEeCC
Confidence 99999999999999999999999999998888654443
No 6
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: d.58.6.1 PDB: 1wkk_A* 1wkl_A*
Probab=100.00 E-value=2.5e-42 Score=262.78 Aligned_cols=119 Identities=50% Similarity=0.874 Sum_probs=113.9
Q ss_pred cceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCch
Q psy6076 23 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNV 102 (188)
Q Consensus 23 ~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~na 102 (188)
.|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|+|+||
T Consensus 1 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtsGPvva~vl~g~~a 80 (137)
T 1wkj_A 1 MERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPGLVRFITSGPVVAMVLEGPGV 80 (137)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGSSSSSHHHHHHHHTSSCEEEEEEESTTH
T ss_pred CeeEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeCCcH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhhc
Q psy6076 103 IKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA 141 (188)
Q Consensus 103 V~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~~ 141 (188)
|+.||+++|||||..|+|+|||++||.+..+|..|..++
T Consensus 81 V~~~R~l~G~t~p~~A~pgtiR~~fg~~~~~N~vHgSDs 119 (137)
T 1wkj_A 81 VAEVRKMMGATHPKDALPGTIRGDFATTIDENVIHGSAT 119 (137)
T ss_dssp HHHHHHHHCCSSTTTCCTTSHHHHHCCCSTTCSEEECSS
T ss_pred HHHHHHHhCCCCCCcCCCCcchHHhCCCcccceEEecCC
Confidence 999999999999999999999999999998986555543
No 7
>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate, transferase; 2.60A {Mycobacterium tuberculosis} SCOP: d.58.6.1
Probab=100.00 E-value=3.7e-42 Score=261.52 Aligned_cols=119 Identities=40% Similarity=0.727 Sum_probs=114.3
Q ss_pred cceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCch
Q psy6076 23 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNV 102 (188)
Q Consensus 23 ~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~na 102 (188)
.|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|+|+||
T Consensus 2 ~e~Tl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~a 81 (136)
T 1k44_A 2 TERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSLLEFITSGPVVAAIVEGTRA 81 (136)
T ss_dssp CEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHTTTSCEEEEEEEETTH
T ss_pred ceEEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhccCCEEEEEEeCCCH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhCCCCCC-CCCCCCcccchhhhhhhhhhhhhhc
Q psy6076 103 IKVGRSMLGATNPA-DCIPGTIRGDLCLLVCCLLQCALYA 141 (188)
Q Consensus 103 V~~~r~l~Gp~~~~-~a~p~slRa~fg~~~~~n~~~~~~~ 141 (188)
|+.||+++|||||. .|+|+|||++||.+..+|..|..++
T Consensus 82 V~~~R~l~G~t~p~~~A~pgtiR~~fg~~~~~N~vHgSDs 121 (136)
T 1k44_A 82 IAAVRQLAGGTDPVQAAAPGTIRGDFALETQFNLVHGSDS 121 (136)
T ss_dssp HHHHHHHHCCSSTTTTSCTTSHHHHHCCCSTTCCEEECSS
T ss_pred HHHHHHHhCCCCccccCCCCCcHHHhcCCccceEEEeCCC
Confidence 99999999999999 9999999999999999987665553
No 8
>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN hexamer structure, ATP-binding, magnesium, metal- nucleotide metabolism; HET: TNM TNV; 1.65A {Dictyostelium discoideum} SCOP: d.58.6.1 PDB: 1b4s_A* 1mn9_A* 1f3f_A* 1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A* 1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A* 1hhq_A 1lwx_A* 1npk_A ...
Probab=100.00 E-value=3e-42 Score=266.84 Aligned_cols=120 Identities=47% Similarity=0.821 Sum_probs=114.7
Q ss_pred CCcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeC
Q psy6076 21 PNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGL 100 (188)
Q Consensus 21 ~~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~ 100 (188)
...|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||++||+|+|+
T Consensus 6 ~~~ErTl~iIKPDav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~ 85 (155)
T 3fkb_A 6 VNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFEGK 85 (155)
T ss_dssp CTTCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEST
T ss_pred cccceEEEEEChhHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCchHHHHHHHhcCCCEEEEEEeCC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhh
Q psy6076 101 NVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALY 140 (188)
Q Consensus 101 naV~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~ 140 (188)
|||+.||+++|||||..|+|+|||++||.+..+|..|..+
T Consensus 86 naV~~~R~l~G~t~p~~a~PgtIR~~fg~~~~~N~vHgSD 125 (155)
T 3fkb_A 86 GVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIGGSD 125 (155)
T ss_dssp THHHHHHHHHCCSSGGGSCTTSHHHHHCCBTTBCSEEECS
T ss_pred CHHHHHHHhcCCCChhhcCCCChhHHhCCCccceeEEeCC
Confidence 9999999999999999999999999999998888655444
No 9
>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding, transferase, tumor suppressor; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.9e-42 Score=269.65 Aligned_cols=122 Identities=63% Similarity=1.087 Sum_probs=115.9
Q ss_pred cCCCcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEe
Q psy6076 19 ASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWE 98 (188)
Q Consensus 19 ~~~~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~ 98 (188)
+.+..|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||++||+|+
T Consensus 20 ~~~~~ErTl~iIKPDav~r~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvle 99 (172)
T 3l7u_A 20 HMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWE 99 (172)
T ss_dssp -CGGGCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHHSSCEEEEEEE
T ss_pred hcchhceEEEEEChHHHhcccHHHHHHHHHHcCCEEEEEEEEeCCHHHHHHHHHHhcCCchHHHHHHHHhcCCeEEEEEe
Confidence 66788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCchhHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhh
Q psy6076 99 GLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALY 140 (188)
Q Consensus 99 g~naV~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~ 140 (188)
|+|||+.||+++|||||..|+|+|||++||.+..+|+.|..+
T Consensus 100 g~naV~~~R~l~GpTdp~~A~PgTIR~~fg~~~~~N~VHgSD 141 (172)
T 3l7u_A 100 GLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSD 141 (172)
T ss_dssp STTHHHHHHHHHCCSSTTTCCTTSHHHHHCCCGGGCCEEECS
T ss_pred CCCHHHHHHHHcCCCChhhcCCCChhHHhcCCCCCcEEEeCC
Confidence 999999999999999999999999999999999998654443
No 10
>3ztp_A Nucleoside diphosphate kinase; transferase; HET: GOL; 1.37A {Aquifex aeolicus} PDB: 3zto_A* 3ztq_A 3ztr_A 3zts_A
Probab=100.00 E-value=1.4e-42 Score=265.51 Aligned_cols=120 Identities=34% Similarity=0.598 Sum_probs=114.5
Q ss_pred CcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCc
Q psy6076 22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLN 101 (188)
Q Consensus 22 ~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~n 101 (188)
..|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|+|+|
T Consensus 2 ~~e~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~e~a~~~Y~~~~~kpff~~Lv~~mtSGPvva~vl~g~n 81 (142)
T 3ztp_A 2 AVERTLIIVKPDAMEKGALGKILDRFIQEGFQIKALKMFRFTPEKAGEFYYVHRERPFFQELVEFMSSGPVVAAVLEGED 81 (142)
T ss_dssp CEEEEEEEECHHHHHHTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEET
T ss_pred ccceEEEEEChHHHhcccHHHHHHHHHHcCCEEEEEeeccCCHHHHHHHHHHhcCCchHHHHHHHhcCCCEEEEEEeCCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhCCCCCCCC---CCCCcccchhhhhhhhhhhhhhc
Q psy6076 102 VIKVGRSMLGATNPADC---IPGTIRGDLCLLVCCLLQCALYA 141 (188)
Q Consensus 102 aV~~~r~l~Gp~~~~~a---~p~slRa~fg~~~~~n~~~~~~~ 141 (188)
||+.||+++|||||..| +|+|||++||.+..+|..|..++
T Consensus 82 aV~~~R~l~G~t~p~~A~~~~pgtiR~~fg~~~~~N~vHgSDs 124 (142)
T 3ztp_A 82 AIKRVREIIGPTDSEEARKVAPNSIRAQFGTDKGKNAIHASDS 124 (142)
T ss_dssp HHHHHHHHHCCSSHHHHHHHCTTSHHHHHCCSSSSCSEEECCS
T ss_pred HHHHHHHhcCCCCHHHhhhcCCCChHHHhCCCCCceeEEeCCC
Confidence 99999999999999999 99999999999999986555543
No 11
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer, signaling protein,transferase; 1.62A {Escherichia coli}
Probab=100.00 E-value=6.2e-42 Score=261.94 Aligned_cols=119 Identities=39% Similarity=0.661 Sum_probs=113.9
Q ss_pred cceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCch
Q psy6076 23 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNV 102 (188)
Q Consensus 23 ~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~na 102 (188)
.|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|+|+||
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~a 81 (142)
T 2hur_A 2 IERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLEGENA 81 (142)
T ss_dssp EEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETH
T ss_pred ceEEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCchHHHHHHhcCCCEEEEEEecccH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhhc
Q psy6076 103 IKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA 141 (188)
Q Consensus 103 V~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~~ 141 (188)
|+.||+++|||||..|+|+|||++||.+..+|..|..++
T Consensus 82 V~~~R~l~G~t~p~~A~pgtiR~~fg~~~~~N~vHgSDs 120 (142)
T 2hur_A 82 VQRHRDLLGATNPANALAGTLRADYADSLTENGTHGSDS 120 (142)
T ss_dssp HHHHHHHHCCSSTTTSCTTSHHHHHCSSSTTCSEEECSS
T ss_pred HHHHHHHhCCCCcccCCCCcchHHhCCCcccceEEeCCC
Confidence 999999999999999999999999999999986555443
No 12
>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, giardiasis; 2.65A {Giardia lamblia} SCOP: d.58.6.1
Probab=100.00 E-value=2.4e-42 Score=267.33 Aligned_cols=120 Identities=52% Similarity=0.931 Sum_probs=87.8
Q ss_pred CCcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeC
Q psy6076 21 PNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGL 100 (188)
Q Consensus 21 ~~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~ 100 (188)
+..|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||++||+|+|+
T Consensus 5 m~~ErTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~ 84 (155)
T 3r9l_A 5 MARERTFLMVKPDGVQRGLVGEIISRFERRGFKLVAMKFFVPSKNLVEEHYKEHAARPFFAGLCKFLSSGPVCAMVWEGA 84 (155)
T ss_dssp CCSCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEECC---------------------------CCSCCEEEEEEST
T ss_pred cchheEEEEEChHHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCccHHHHHHHhcCCCEEEEEEeCC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhh
Q psy6076 101 NVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALY 140 (188)
Q Consensus 101 naV~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~ 140 (188)
|||+.||+++|||||..|+|+|||++||.+..+|..|..+
T Consensus 85 naV~~~R~l~G~t~p~~a~PgtIR~~fg~~~~~N~vHgSD 124 (155)
T 3r9l_A 85 NVVSISRTMMGVTKPAESAPGTIRGDFGIDVGRNIIHGSA 124 (155)
T ss_dssp THHHHHHHHHCCSCTTTCCTTSHHHHHCCSSTTCCEEECS
T ss_pred CHHHHHHHhcCCCChhhcCCCChhHHhCCCccceeEEeCC
Confidence 9999999999999999999999999999999888655444
No 13
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A {Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R 3pj9_A
Probab=100.00 E-value=6.8e-42 Score=262.20 Aligned_cols=118 Identities=42% Similarity=0.703 Sum_probs=113.3
Q ss_pred cceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCch
Q psy6076 23 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNV 102 (188)
Q Consensus 23 ~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~na 102 (188)
.|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|+|+||
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~a 81 (144)
T 1nhk_R 2 IERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKDLVQFMISGPVVLMVLEGENA 81 (144)
T ss_dssp EEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETH
T ss_pred ceEEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhccCCEEEEEEeccCH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhh
Q psy6076 103 IKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALY 140 (188)
Q Consensus 103 V~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~ 140 (188)
|+.||+++|||||..|+|+|||++||.+..+|..|..+
T Consensus 82 V~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSD 119 (144)
T 1nhk_R 82 VLANRDIMGATNPAQAAEGTIRKDFATSIDKNTVHGSD 119 (144)
T ss_dssp HHHHHHHHCCSSGGGCCTTSHHHHHCCSSSSCSEEECS
T ss_pred HHHHHHHhCCCCCCcCCCCcchHHhCCCCcceeEEeCC
Confidence 99999999999999999999999999998888655444
No 14
>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative, structural genomics, SGPP; 3.05A {Plasmodium falciparum} SCOP: d.58.6.1
Probab=100.00 E-value=9.9e-42 Score=264.40 Aligned_cols=121 Identities=52% Similarity=0.980 Sum_probs=113.8
Q ss_pred CCCcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEee
Q psy6076 20 SPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEG 99 (188)
Q Consensus 20 ~~~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g 99 (188)
...+|+||+|||||++++|++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|+|
T Consensus 6 ~~~~~~Tl~iIKPDav~r~lvGeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg 85 (157)
T 1xiq_A 6 HHHMEKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFFKNLVAYISKGPVVAMVWEG 85 (157)
T ss_dssp ---CCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGSSSSSCTTHHHHHTTSCEEEEEEES
T ss_pred cchhheEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHHcCCCEEEEEEec
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhh
Q psy6076 100 LNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALY 140 (188)
Q Consensus 100 ~naV~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~ 140 (188)
+|||+.||+++|||||..|+|+|||++||.+..+|..|..+
T Consensus 86 ~naV~~~R~l~G~T~p~~A~pgtIR~~fg~~~~~N~vHgSD 126 (157)
T 1xiq_A 86 VDMVKQGRKLIGETNPLTSNTGTIRGDFCLEVSKNVIHGSD 126 (157)
T ss_dssp TTHHHHHHHHHCCSSTTTSCTTSHHHHHCCBTTBCSEEECS
T ss_pred ccchHHHHHHcCCCCCCcCCCCChHHHhCCCCCceeEEeCC
Confidence 99999999999999999999999999999999888655444
No 15
>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding, metal-binding, phosphoprotein, nucleotide metabolism, cytoplasm, magnesium; 2.0A {Bacillus anthracis}
Probab=100.00 E-value=7e-42 Score=263.33 Aligned_cols=118 Identities=45% Similarity=0.865 Sum_probs=113.2
Q ss_pred cceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCch
Q psy6076 23 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNV 102 (188)
Q Consensus 23 ~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~na 102 (188)
+|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|+|+||
T Consensus 1 ~ErTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg~~a 80 (148)
T 2vu5_A 1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHEEKPFFGELVDFITSGPVFAMVWQGEGV 80 (148)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHTGGGTTTCTHHHHHHHHHTTCCEEEEEEESTTH
T ss_pred CeEEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeccCh
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhh
Q psy6076 103 IKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALY 140 (188)
Q Consensus 103 V~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~ 140 (188)
|+.||+++|||||..|+|+|||++||.+..+|..|..+
T Consensus 81 V~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSD 118 (148)
T 2vu5_A 81 VDTARNMMGKTRPHEAAPGTIRGDFGVTVAKNIIHGSD 118 (148)
T ss_dssp HHHHHHHHCCSSTTTSCTTSHHHHHCCCSTTCSEEECS
T ss_pred HHHHHHHhCCCCccccCCCChHHHhcCCcccceEEeCC
Confidence 99999999999999999999999999998888655444
No 16
>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta sandwich, ATP-binding, magnesium, metal-B mitochondrion; 3.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-42 Score=267.36 Aligned_cols=123 Identities=52% Similarity=0.907 Sum_probs=109.5
Q ss_pred ccCCCcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEE
Q psy6076 18 TASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVW 97 (188)
Q Consensus 18 ~~~~~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l 97 (188)
++++..|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|
T Consensus 8 ~~~~~~erTl~iIKPDav~~~liGeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvl 87 (161)
T 3b54_A 8 HMSSQTERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADDKLLEQHYAEHVGKPFFPKMVSFMKSGPILATVW 87 (161)
T ss_dssp --CCCCCEEEEEECHHHHHHTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHCC-------CHHHHHHHHSSCEEEEEE
T ss_pred ccccccceEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHhcCCCEEEEEE
Confidence 38889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCchhHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhh
Q psy6076 98 EGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALY 140 (188)
Q Consensus 98 ~g~naV~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~ 140 (188)
+|+|||+.||+++|||||..|+|+|||++||.+..+|..|..+
T Consensus 88 eg~naV~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSD 130 (161)
T 3b54_A 88 EGKDVVRQGRTILGATNPLGSAPGTIRGDFGIDLGRNVCHGSD 130 (161)
T ss_dssp ESTTHHHHHHHHHCCSSGGGSCTTSHHHHHCCBTTBCSEEECS
T ss_pred eccChHHHHHHHhCCCCcccCCCCChHHHhcCCCCCceEEeCC
Confidence 9999999999999999999999999999999998888654443
No 17
>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza sativa} SCOP: d.58.6.1
Probab=100.00 E-value=1e-41 Score=262.80 Aligned_cols=119 Identities=51% Similarity=0.909 Sum_probs=114.2
Q ss_pred cceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCch
Q psy6076 23 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNV 102 (188)
Q Consensus 23 ~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~na 102 (188)
+|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|+|+||
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg~~a 81 (150)
T 1pku_A 2 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGLVEYIISGPVVAMVWEGKDV 81 (150)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHSGGGTTSTTHHHHHHHHHSSCEEEEEEESTTH
T ss_pred ceEEEEEEChhHhccccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCccHHHHHHhcCCCEEEEEEeccch
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhhc
Q psy6076 103 IKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA 141 (188)
Q Consensus 103 V~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~~ 141 (188)
|+.||+++|||||..|+|+|||++||.+..+|..|..++
T Consensus 82 V~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSDs 120 (150)
T 1pku_A 82 VATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDS 120 (150)
T ss_dssp HHHHHHHHCCSSGGGSCTTSHHHHHCSBTTBCSEEECSS
T ss_pred HHHHHHHhCCCCcccCCCCChHHHhCCCccceeEEeCCC
Confidence 999999999999999999999999999999986555543
No 18
>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A {Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A*
Probab=100.00 E-value=1.7e-41 Score=262.41 Aligned_cols=119 Identities=49% Similarity=0.879 Sum_probs=114.0
Q ss_pred CcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCc
Q psy6076 22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLN 101 (188)
Q Consensus 22 ~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~n 101 (188)
..|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|+|+|
T Consensus 4 ~~erTl~iIKPDav~~~l~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~~ 83 (153)
T 1s57_A 4 DVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNLIEYITSGPVVCMAWEGVG 83 (153)
T ss_dssp CCEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSSSHHHHHHHHTSSCEEEEEEEETT
T ss_pred ccceEEEEEChhHhhcccHHHHHHHHHHcCCEehhhhhCCCCHHHHHHHHHHhcCCCcchhHHHHhcCCCEEEEEEeccc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhh
Q psy6076 102 VIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALY 140 (188)
Q Consensus 102 aV~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~ 140 (188)
||+.||+++|||||..|+|+|||++||.+..+|..|..+
T Consensus 84 aV~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSD 122 (153)
T 1s57_A 84 VVASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVHGSD 122 (153)
T ss_dssp HHHHHHHHHCCSSTTTSCTTSHHHHHCCBTTBCCEEECS
T ss_pred HHHHHHHHhCCCCccccCCcchHHHhcCCCcCceEEcCC
Confidence 999999999999999999999999999998888655444
No 19
>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate, transferase; 2.40A {Arabidopsis thaliana} SCOP: d.58.6.1
Probab=100.00 E-value=1.1e-41 Score=262.35 Aligned_cols=119 Identities=49% Similarity=0.889 Sum_probs=114.0
Q ss_pred cceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCch
Q psy6076 23 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNV 102 (188)
Q Consensus 23 ~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~na 102 (188)
+|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|+|+||
T Consensus 1 ~e~Tl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~~~~kpff~~Lv~~mtSGPvva~vleg~~a 80 (149)
T 1u8w_A 1 MEQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGLVDYIVSGPVVAMIWEGKNV 80 (149)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTCTTSSSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred CeeEEEEECchHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCcchhHHhHhcCCCEEEEEEecCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhhc
Q psy6076 103 IKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA 141 (188)
Q Consensus 103 V~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~~ 141 (188)
|+.||+++|||||..|+|+|||++||.+..+|..|..++
T Consensus 81 V~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSDs 119 (149)
T 1u8w_A 81 VLTGRKIIGATNPAASEPGTIRGDFAIDIGRNVIHGSDS 119 (149)
T ss_dssp HHHHHHHHCCSSTTTCCTTSHHHHHCCSTTSCSEEECSS
T ss_pred hHHHHHHhCCCCcccCCCCCcHHHHCCCCcCceEEecCC
Confidence 999999999999999999999999999999986555443
No 20
>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP; 2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB: 2az1_A 2zua_A
Probab=100.00 E-value=2.7e-41 Score=263.62 Aligned_cols=125 Identities=46% Similarity=0.816 Sum_probs=116.3
Q ss_pred cCCCcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEe
Q psy6076 19 ASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWE 98 (188)
Q Consensus 19 ~~~~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~ 98 (188)
+.+..|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|+
T Consensus 4 l~~~~e~Tl~iIKPDav~~~~~GeIi~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvle 83 (164)
T 2az3_A 4 MTDHDERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFDGLVSFITSGPVFAMVWE 83 (164)
T ss_dssp ---CCCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEE
T ss_pred ccCccceEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEEc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCchhHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhhccC
Q psy6076 99 GLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYATA 143 (188)
Q Consensus 99 g~naV~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~~~~ 143 (188)
|+|||+.||+++|||||..|+|+|||++||.+..+|..|..++.+
T Consensus 84 g~~aV~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSDs~e 128 (164)
T 2az3_A 84 GADATRQVRQLMGATDAQDAAPGTIRGDYGNDLGHNLIHGSDHED 128 (164)
T ss_dssp STTHHHHHHHHHCCSSGGGSCTTSHHHHHCCCSSSCSEEECCTTS
T ss_pred cccHHHHHHHHhCCCCccccCCCcchhhhcccccCceEEecCCcc
Confidence 999999999999999999999999999999999888666555443
No 21
>3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer, NM23 GEN, hexamer, activator, oncogene, ATP-binding, cell cycle, DNA-binding; HET: DG DA; 1.30A {Homo sapiens} SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R 3bbc_A 1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A* 1nsq_A* 1ndl_A*
Probab=100.00 E-value=2.1e-41 Score=261.39 Aligned_cols=119 Identities=65% Similarity=1.113 Sum_probs=113.9
Q ss_pred CcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCc
Q psy6076 22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLN 101 (188)
Q Consensus 22 ~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~n 101 (188)
..|+||+|||||+++++++|+||++|+++||+|+++||+++++++|++||.+|+++|||++|++||+|||+++|+|+|+|
T Consensus 2 ~~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~~ 81 (151)
T 3bbb_A 2 NLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLN 81 (151)
T ss_dssp TTCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTT
T ss_pred CcceEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCchHHHHHHHccCCEEEEEEecCC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhh
Q psy6076 102 VIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALY 140 (188)
Q Consensus 102 aV~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~ 140 (188)
||+.||+++|||||..|.|+|||++||.+..+|..|..+
T Consensus 82 aV~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSD 120 (151)
T 3bbb_A 82 VVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSD 120 (151)
T ss_dssp HHHHHHHHHCCSSGGGCCTTSHHHHHCCBTTBCCEEECS
T ss_pred HHHHHHHHhCCCCcccCCCCCcHHHhcCCcccceEEecC
Confidence 999999999999999999999999999998888655444
No 22
>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial, killer-O transferase; 2.40A {Homo sapiens} SCOP: d.58.6.1
Probab=100.00 E-value=2.2e-41 Score=263.50 Aligned_cols=120 Identities=51% Similarity=0.942 Sum_probs=114.4
Q ss_pred CcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCc
Q psy6076 22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLN 101 (188)
Q Consensus 22 ~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~n 101 (188)
..|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||++||+|+|+|
T Consensus 23 ~~ErTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~n 102 (162)
T 1ehw_A 23 TRERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYN 102 (162)
T ss_dssp GGCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTT
T ss_pred hhceEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEEechh
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhhc
Q psy6076 102 VIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA 141 (188)
Q Consensus 102 aV~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~~ 141 (188)
||+.||+++|||||..|+|+|||++||.+..+|..|..++
T Consensus 103 aV~~~R~l~G~T~p~~A~PgtIR~~fg~~~~~N~vHgSDs 142 (162)
T 1ehw_A 103 VVRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDS 142 (162)
T ss_dssp HHHHHHHHHCCSSGGGSCTTSHHHHHCCCSSCCSEEECSS
T ss_pred HHHHHHHHhCCCCCCCCCCCChHHHhCCCCCCeEEEECCC
Confidence 9999999999999999999999999999988886554443
No 23
>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, babesiosis; 2.50A {Babesia bovis} SCOP: d.58.6.0
Probab=100.00 E-value=2.2e-41 Score=262.02 Aligned_cols=121 Identities=48% Similarity=0.855 Sum_probs=113.7
Q ss_pred CCCcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEee
Q psy6076 20 SPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEG 99 (188)
Q Consensus 20 ~~~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g 99 (188)
...+|+|++|||||++++|++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|+|
T Consensus 6 ~~~~~~~~~iIKPDaV~r~~vGeIi~rie~~Gf~Iva~K~~~lt~e~a~~fY~~h~~kpff~~Lv~fmtSGPvvamvleg 85 (156)
T 3js9_A 6 HHHMERTYIMVKPDGVQRGLIGEILKRFEMKGLKLIAAKFEHPTMDVVAQHYCEHKDKPFFKDLCDFISHGPVFCMIWEG 85 (156)
T ss_dssp ---CEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHHHCCEEEEEEEE
T ss_pred ccchhcceEEEChHHHhcccHHHHHHHHHHcCCEEEEEEEecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCCEEEEEec
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhh
Q psy6076 100 LNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALY 140 (188)
Q Consensus 100 ~naV~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~ 140 (188)
+|||+.||+++|||||.+|+|+|||++||.+..+|..+..+
T Consensus 86 ~naV~~~R~l~G~T~p~~A~PgTIR~~fg~~~~~N~vHgSD 126 (156)
T 3js9_A 86 PEAIKIGRNLVGLTSPVESAAGTIRGDFGVVKNFNIVHASS 126 (156)
T ss_dssp TTHHHHHHHHHCCSSGGGSCTTSHHHHHCCSGGGCCEEECC
T ss_pred cchHHHHHHhcCCCCccccCCCCHHHHhCCCCCceeEEcCC
Confidence 99999999999999999999999999999999888655444
No 24
>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis, transferase, struc genomics, structural genomics consortium, SGC; HET: ADP; 2.30A {Homo sapiens} SCOP: d.58.6.1
Probab=100.00 E-value=3.2e-41 Score=264.42 Aligned_cols=122 Identities=58% Similarity=1.037 Sum_probs=115.8
Q ss_pred cCCCcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEe
Q psy6076 19 ASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWE 98 (188)
Q Consensus 19 ~~~~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~ 98 (188)
+....|+||+|||||+++++++|+||++|+++||+|+++||++|++++|++||.+|+++|||++|++||+|||+++|+|+
T Consensus 17 ~~~~~erTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvle 96 (169)
T 1zs6_A 17 CTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQ 96 (169)
T ss_dssp -CGGGCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEE
T ss_pred hhhhhccEEEEEChhhhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEe
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCchhHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhh
Q psy6076 99 GLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALY 140 (188)
Q Consensus 99 g~naV~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~ 140 (188)
|+|||+.||+++|||||..|+|+|||++||.+..+|..|..+
T Consensus 97 g~~aV~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSD 138 (169)
T 1zs6_A 97 GLDVVRTSRALIGATNPADAPPGTIRGDFCIEVGKNLIHGSD 138 (169)
T ss_dssp STTHHHHHHHHHCCSSGGGSCTTSHHHHHCCSGGGCSEEECS
T ss_pred cCCchHHHHHHhCCCCcccCCCCChHHHHcCCCcCceEEecC
Confidence 999999999999999999999999999999999998655444
No 25
>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians, transferase; 2.20A {Virgibacillus halodenitrificans} SCOP: d.58.6.1
Probab=100.00 E-value=1.1e-41 Score=262.68 Aligned_cols=118 Identities=50% Similarity=0.801 Sum_probs=113.2
Q ss_pred cceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCch
Q psy6076 23 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNV 102 (188)
Q Consensus 23 ~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~na 102 (188)
+|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||++||+|+|+||
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~na 81 (150)
T 1nb2_A 2 KERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGGLVGGATSGPVFAMVWEGLNA 81 (150)
T ss_dssp CCCEEEEECHHHHHTTCHHHHHHHHHTTTCEEEEEECCCCTTHHHHHHTCTTSSSTTHHHHHHHHTSSCCBEEEEESTTH
T ss_pred ceEEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEecCCH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhh
Q psy6076 103 IKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALY 140 (188)
Q Consensus 103 V~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~ 140 (188)
|+.||+++|||||..|+|+|||++||.+..+|..|..+
T Consensus 82 V~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSD 119 (150)
T 1nb2_A 82 AATARQILGATNPSDAAPGTIRGDFGVSAGRNAIHGSD 119 (150)
T ss_dssp HHHHHHHHCCSSTTSSCTTSHHHHSCSCSSSCSEEECS
T ss_pred HHHHHHHhCCCCcccCCCCChHHHhcCCccceeEEeCC
Confidence 99999999999999999999999999998888655443
No 26
>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum sativum} SCOP: d.58.6.1
Probab=100.00 E-value=3.9e-41 Score=266.46 Aligned_cols=122 Identities=49% Similarity=0.898 Sum_probs=115.3
Q ss_pred cCCCcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEe
Q psy6076 19 ASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWE 98 (188)
Q Consensus 19 ~~~~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~ 98 (188)
++..+|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||++||+|+
T Consensus 28 ~~~~~erTl~iIKPDav~r~liGeIi~rie~~Gf~Iv~~K~~~ls~e~A~~fY~~h~~kpff~~Lv~~mtSGPvvamvle 107 (182)
T 1w7w_A 28 PEAELERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFFNGLCDFLSSGPVIAMVWE 107 (182)
T ss_dssp --CTTCEEEEEECHHHHHTTCHHHHHHHHHTTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEE
T ss_pred ccchhceEEEEEChHHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEEe
Confidence 55678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCchhHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhh
Q psy6076 99 GLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALY 140 (188)
Q Consensus 99 g~naV~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~ 140 (188)
|+|||+.||+++|||||..|+|+|||++||.+..+|..|..+
T Consensus 108 G~naV~~~R~l~G~T~p~~A~PgTIR~~fg~~~~~N~vHgSD 149 (182)
T 1w7w_A 108 GEGVITYGRKLIGATDPQKSAPGTIRGDLAVVVGRNIIHGSD 149 (182)
T ss_dssp STTHHHHHHHHHCCSSGGGSCTTSHHHHHCCSGGGCCEEECC
T ss_pred cccHHHHHHHHhCCCCCCCCCCCChHHHhCCCccceeEEeCC
Confidence 999999999999999999999999999999999998655444
No 27
>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A* 2dy9_A* 2dya_A*
Probab=100.00 E-value=3.3e-41 Score=262.45 Aligned_cols=120 Identities=48% Similarity=0.806 Sum_probs=114.5
Q ss_pred CcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCc
Q psy6076 22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLN 101 (188)
Q Consensus 22 ~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~n 101 (188)
..|+||+|||||+++++++|+||++|+++||+|+++||+++|+++|++||.+|+++|||++|++||+|||++||+|+|+|
T Consensus 6 ~~erTl~iIKPDav~~~l~G~Ii~rie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~~ 85 (160)
T 2dxe_A 6 ETERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKALIDYITKTPVVVMVLEGRY 85 (160)
T ss_dssp CEEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEET
T ss_pred cCCeEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeccC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhCCCCCCCCCCCCcccchhhhhhh---hhhhhhhc
Q psy6076 102 VIKVGRSMLGATNPADCIPGTIRGDLCLLVCC---LLQCALYA 141 (188)
Q Consensus 102 aV~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~---n~~~~~~~ 141 (188)
||+.||+++|||||..|+|+|||++||.+..+ |..|..++
T Consensus 86 aV~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~~~~N~vHgSDs 128 (160)
T 2dxe_A 86 AVEVVRKMAGATDPKDAAPGTIRGDFGLEVSDAICNVIHASDS 128 (160)
T ss_dssp HHHHHHHHHCCSSGGGSCTTSHHHHHCCCCSSSCCCSEEECSS
T ss_pred HHHHHHHHhCCCCCCcCCCCChHHHhcCCcccCcCceEEcCCC
Confidence 99999999999999999999999999999999 86554443
No 28
>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition state mimic, transition state analog, transferas; HET: ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A*
Probab=100.00 E-value=2.1e-41 Score=269.24 Aligned_cols=128 Identities=38% Similarity=0.616 Sum_probs=116.1
Q ss_pred hhhhhccCCCcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhH-----HhcCCCchhhhhchh
Q psy6076 13 CALYATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYA-----ALKDKPFFESLIKYM 87 (188)
Q Consensus 13 i~sr~~~~~~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~-----~~~~~~~~~~lv~~m 87 (188)
-.+++.+++..|+||+|||||+++++++|+||++|+++||+|+++||+++|+++|++||. +|+++|||++|++||
T Consensus 16 ~~~~~~~~~~~ErTl~iIKPDav~r~l~G~Ii~rie~~Gf~Iva~K~~~ls~e~a~~fY~~~~~~~h~~kpff~~Lv~~m 95 (190)
T 4dz6_A 16 TQGPGSMSMLLQKTLCIVKPDGVRRGLIGDVVSRFERVGLKMVAAKMLIVDESLAKKHYLYDDIVFRHSEAVWNSLIKFI 95 (190)
T ss_dssp -------CTTEEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEEECCHHHHHHHSCHHHHHHHTCHHHHHHHHHHH
T ss_pred ccCcccccchhhcEEEEEChHHHhcCcHHHHHHHHHHcCCEEEEEEEecCCHHHHHHHhcccccHHhcCccHHHHHHHHh
Confidence 356777888999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred ccCcEEEEEEeeCchhHHHHHHhCCCCCCCCCCCCcccchhhhh----------hhhhhhhhh
Q psy6076 88 SSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLV----------CCLLQCALY 140 (188)
Q Consensus 88 tsGp~val~l~g~naV~~~r~l~Gp~~~~~a~p~slRa~fg~~~----------~~n~~~~~~ 140 (188)
+|||+++|+|+|+|||+.||+++|||||..|+|+|||++||.+. .+|+.|..+
T Consensus 96 tSGPvvamvleG~naV~~~R~l~GpTdP~~A~PgTIRg~fg~~~~~~a~~~~~~~~N~VHgSD 158 (190)
T 4dz6_A 96 SNSPVFTFVVEGVESIEVVRKLCGATEPKLAIPGTIRGDFSYHSFKYSNEKGFSIYNVIHASA 158 (190)
T ss_dssp TTSEEEEEEEEEETHHHHHHHHHCCSSGGGSCTTSHHHHHCCCCHHHHHHHTCCCCCSEEECC
T ss_pred cCCCEEEEEEecCCHHHHHHHHcCCCChhhcCCCChHHHhcCChhhhccccccccceeEEcCC
Confidence 99999999999999999999999999999999999999999998 777655444
No 29
>1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin fold, transferase; HET: PGE; 2.50A {Pyrobaculum aerophilum} SCOP: d.58.6.1
Probab=100.00 E-value=2.9e-38 Score=252.69 Aligned_cols=121 Identities=36% Similarity=0.600 Sum_probs=114.5
Q ss_pred CCcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHh-------------H---------------
Q psy6076 21 PNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHY-------------A--------------- 72 (188)
Q Consensus 21 ~~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y-------------~--------------- 72 (188)
+..|+||+|||||++.++++|+||++|+++||+|+++||+++|+++|++|| .
T Consensus 13 ~~~erTlviIKPDav~r~l~G~Ii~r~e~~Gf~Iv~~K~~~ls~~~a~~fY~~~~~~~~~~~~~a~~~~~~~~i~~~~~~ 92 (195)
T 1xqi_A 13 MPVEKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQSAGQKLLKAYQELGIDPRAKI 92 (195)
T ss_dssp -CCCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred chhhcEEEEEchhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHhcchhhhhhhhHHHHHHHHHHhCCChhhhh
Confidence 457999999999999999999999999999999999999999999999999 8
Q ss_pred -----HhcCCCchhhhhchhccCcEEEEEEeeCchhHHHHHHhCCCCCCCCCCCCcccchhhhhhh----------hhhh
Q psy6076 73 -----ALKDKPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCC----------LLQC 137 (188)
Q Consensus 73 -----~~~~~~~~~~lv~~mtsGp~val~l~g~naV~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~----------n~~~ 137 (188)
+|.+++||++|++||+||||++|+|+|+|||+.||+++|||||..|+|+|||++||.+..+ |..|
T Consensus 93 ~~~~~~~~gk~ff~~Lv~~mtsGPvvamvleG~~aV~~~R~l~GpTdP~~A~pgTIRg~fg~~~~~~~~~~~~~~~N~vH 172 (195)
T 1xqi_A 93 GTDDPVEVGRIIKRNLVKYMTSGPNVVMVLKGNRAVEIVRKLVGPTSPHSAPPGTIRGDYSIDSPDLAAEEGRVVFNLVH 172 (195)
T ss_dssp SCCCHHHHHHHHHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSCGGGSCTTSHHHHHCCCCHHHHHHTTSCCCCSEE
T ss_pred ccccchhcCCcchHHHHHHHcCCCEEEEEEechhHHHHHHHHhCCCCCCcCCCCchhHhhcCchhhhccccccccceEEE
Confidence 8999999999999999999999999999999999999999999999999999999999888 7666
Q ss_pred hhhc
Q psy6076 138 ALYA 141 (188)
Q Consensus 138 ~~~~ 141 (188)
++++
T Consensus 173 gSDS 176 (195)
T 1xqi_A 173 ASDS 176 (195)
T ss_dssp ECSS
T ss_pred cCCC
Confidence 5554
No 30
>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A
Probab=99.92 E-value=1.8e-25 Score=192.82 Aligned_cols=92 Identities=14% Similarity=0.277 Sum_probs=88.4
Q ss_pred cCCCcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEe
Q psy6076 19 ASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWE 98 (188)
Q Consensus 19 ~~~~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~ 98 (188)
..+..|+||+|||||++.++++|+||++|+++||+|+++||++|++++|++||.+|+ ++|++||+|||++||+|+
T Consensus 231 ~k~~~erTl~iiKPd~v~r~~iG~Ii~r~e~~G~~i~~~K~~~ls~~~a~~~Y~~h~-----~~Lv~~mtsGPvva~vle 305 (352)
T 3bh7_B 231 QKSSDESCLVVLFAGDYTIANARKLIDEMVGKGFFLVQTKEVSMKAEDAQRVFREKA-----PDFLPLLNKGPVIALEFN 305 (352)
T ss_dssp CCSCCCEEEEEECCSTTHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHGGGG-----GGTGGGGGGSCEEEEEEE
T ss_pred ccccccceEEEEcchHhhhcCHHHHHHHHHHCCCEEEEeEeccCCHHHHHHHHHHHH-----HHHHHHhccCCEEEEEEE
Confidence 456789999999999999999999999999999999999999999999999999997 679999999999999999
Q ss_pred eCchhHHHHHHhCCCCC
Q psy6076 99 GLNVIKVGRSMLGATNP 115 (188)
Q Consensus 99 g~naV~~~r~l~Gp~~~ 115 (188)
|+|||+.||+++|+|+|
T Consensus 306 G~~av~~~R~l~g~t~p 322 (352)
T 3bh7_B 306 GDGAVEVCQLIVNEIFN 322 (352)
T ss_dssp STTHHHHHHHHHHHHCT
T ss_pred CcCHHHHHHHHhcCCCC
Confidence 99999999999999996
No 31
>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum sativum} SCOP: d.58.6.1
Probab=99.10 E-value=3.7e-11 Score=94.73 Aligned_cols=52 Identities=48% Similarity=0.818 Sum_probs=41.7
Q ss_pred hhhhcc--CCCCCceeEEEEcCcccccCcHHHHHHHHHHcCceEEEEEeeecCC
Q psy6076 137 CALYAT--ASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188 (188)
Q Consensus 137 ~~~~~~--~~~~~e~Tl~iIKP~~v~~~~~g~I~~~i~~~gf~I~~~k~~~ls~ 188 (188)
++|++. .....|+||++||||+++++++|+|+++|+++||+|+++|+++||+
T Consensus 20 ~~f~~~~~~~~~~erTl~iIKPDav~r~liGeIi~rie~~Gf~Iv~~K~~~ls~ 73 (182)
T 1w7w_A 20 LYFQGAMDPEAELERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTK 73 (182)
T ss_dssp ----------CTTCEEEEEECHHHHHTTCHHHHHHHHHTTTCEEEEEEEECCCH
T ss_pred hhcCCCccccchhceEEEEEChHHhhcCcHHHHHHHHHHCCCEEEEEEEecCCH
Confidence 444432 4456799999999999999999999999999999999999999984
No 32
>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta sandwich, ATP-binding, magnesium, metal-B mitochondrion; 3.10A {Saccharomyces cerevisiae}
Probab=99.04 E-value=9.4e-11 Score=90.77 Aligned_cols=44 Identities=66% Similarity=1.125 Sum_probs=41.4
Q ss_pred CCCceeEEEEcCcccccCcHHHHHHHHHHcCceEEEEEeeecCC
Q psy6076 145 PNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188 (188)
Q Consensus 145 ~~~e~Tl~iIKP~~v~~~~~g~I~~~i~~~gf~I~~~k~~~ls~ 188 (188)
...|+||++||||+++++++|+|+++|+++||+|+++|+++||+
T Consensus 11 ~~~erTl~iIKPDav~~~liGeIi~rie~~Gf~Iv~~K~~~ls~ 54 (161)
T 3b54_A 11 SQTERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADD 54 (161)
T ss_dssp CCCCEEEEEECHHHHHHTCHHHHHHHHHHHTCEEEEEEEECCCH
T ss_pred cccceEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCH
Confidence 45789999999999999999999999999999999999999984
No 33
>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding, transferase, tumor suppressor; 2.10A {Homo sapiens}
Probab=99.02 E-value=1.2e-10 Score=91.00 Aligned_cols=43 Identities=70% Similarity=1.211 Sum_probs=40.8
Q ss_pred CCceeEEEEcCcccccCcHHHHHHHHHHcCceEEEEEeeecCC
Q psy6076 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188 (188)
Q Consensus 146 ~~e~Tl~iIKP~~v~~~~~g~I~~~i~~~gf~I~~~k~~~ls~ 188 (188)
..|+||++||||+++++++|+|+++|+++||+|+++|+++||+
T Consensus 23 ~~ErTl~iIKPDav~r~l~GeIi~rie~~Gf~Iv~~K~~~ls~ 65 (172)
T 3l7u_A 23 NCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASE 65 (172)
T ss_dssp GGCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCH
T ss_pred hhceEEEEEChHHHhcccHHHHHHHHHHcCCEEEEEEEEeCCH
Confidence 3689999999999999999999999999999999999999984
No 34
>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition state mimic, transition state analog, transferas; HET: ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A*
Probab=99.01 E-value=1.5e-10 Score=91.76 Aligned_cols=45 Identities=44% Similarity=0.836 Sum_probs=41.9
Q ss_pred CCCCceeEEEEcCcccccCcHHHHHHHHHHcCceEEEEEeeecCC
Q psy6076 144 SPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188 (188)
Q Consensus 144 ~~~~e~Tl~iIKP~~v~~~~~g~I~~~i~~~gf~I~~~k~~~ls~ 188 (188)
+...|+||++||||+++++++|+|+++|+++||+|+++|++++|+
T Consensus 23 ~~~~ErTl~iIKPDav~r~l~G~Ii~rie~~Gf~Iva~K~~~ls~ 67 (190)
T 4dz6_A 23 SMLLQKTLCIVKPDGVRRGLIGDVVSRFERVGLKMVAAKMLIVDE 67 (190)
T ss_dssp CTTEEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEEECCH
T ss_pred cchhhcEEEEEChHHHhcCcHHHHHHHHHHcCCEEEEEEEecCCH
Confidence 345789999999999999999999999999999999999999984
No 35
>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial, killer-O transferase; 2.40A {Homo sapiens} SCOP: d.58.6.1
Probab=99.00 E-value=1.7e-10 Score=89.32 Aligned_cols=43 Identities=56% Similarity=1.042 Sum_probs=40.8
Q ss_pred CCceeEEEEcCcccccCcHHHHHHHHHHcCceEEEEEeeecCC
Q psy6076 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188 (188)
Q Consensus 146 ~~e~Tl~iIKP~~v~~~~~g~I~~~i~~~gf~I~~~k~~~ls~ 188 (188)
..|+||++||||+++++++|+|+++|+++||+|+++|+++||+
T Consensus 23 ~~ErTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~K~~~ls~ 65 (162)
T 1ehw_A 23 TRERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPE 65 (162)
T ss_dssp GGCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCH
T ss_pred hhceEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCH
Confidence 3689999999999999999999999999999999999999984
No 36
>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis, transferase, struc genomics, structural genomics consortium, SGC; HET: ADP; 2.30A {Homo sapiens} SCOP: d.58.6.1
Probab=98.97 E-value=2.4e-10 Score=89.18 Aligned_cols=44 Identities=66% Similarity=1.079 Sum_probs=41.4
Q ss_pred CCCceeEEEEcCcccccCcHHHHHHHHHHcCceEEEEEeeecCC
Q psy6076 145 PNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188 (188)
Q Consensus 145 ~~~e~Tl~iIKP~~v~~~~~g~I~~~i~~~gf~I~~~k~~~ls~ 188 (188)
...|+||++||||+++++++|+|+++|+++||+|+++|+++||+
T Consensus 19 ~~~erTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~k~~~ls~ 62 (169)
T 1zs6_A 19 GAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASE 62 (169)
T ss_dssp GGGCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCH
T ss_pred hhhccEEEEEChhhhhcccHHHHHHHHHHCCCEEEEEEEecCCH
Confidence 45789999999999999999999999999999999999999984
No 37
>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A
Probab=98.56 E-value=3.6e-08 Score=84.94 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=41.2
Q ss_pred CCCceeEEEEcCcccccCcHHHHHHHHHHcCceEEEEEeeecCC
Q psy6076 145 PNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188 (188)
Q Consensus 145 ~~~e~Tl~iIKP~~v~~~~~g~I~~~i~~~gf~I~~~k~~~ls~ 188 (188)
...|+||++||||+++++++|+|+++|+++||+|+++||+++|+
T Consensus 233 ~~~erTl~iiKPd~v~r~~iG~Ii~r~e~~G~~i~~~K~~~ls~ 276 (352)
T 3bh7_B 233 SSDESCLVVLFAGDYTIANARKLIDEMVGKGFFLVQTKEVSMKA 276 (352)
T ss_dssp SCCCEEEEEECCSTTHHHHHHHHHHHHHHTTCEEEEEEEECCCH
T ss_pred ccccceEEEEcchHhhhcCHHHHHHHHHHCCCEEEEeEeccCCH
Confidence 34689999999999999999999999999999999999999984
No 38
>2z14_A EF-hand domain-containing family member C2; DUF1126, human EF-hand domain, alternative splicing, polymorphism, signaling protein; 1.68A {Homo sapiens} PDB: 2z13_A
Probab=88.16 E-value=0.068 Score=39.57 Aligned_cols=16 Identities=6% Similarity=-0.338 Sum_probs=14.8
Q ss_pred CCcchhhhhhhhhhhc
Q psy6076 3 SKLLVCFLLQCALYAT 18 (188)
Q Consensus 3 ~~~~~g~~~~i~sr~~ 18 (188)
+||+||+.|+||+|++
T Consensus 87 ~Dl~VG~~v~i~gR~f 102 (133)
T 2z14_A 87 YHFNVGTEVVFYGRTF 102 (133)
T ss_dssp GGCCTTCEEEETTEEE
T ss_pred HHcccCCEEEEecEEE
Confidence 6899999999999887
No 39
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=76.93 E-value=2.1 Score=29.15 Aligned_cols=46 Identities=11% Similarity=0.087 Sum_probs=38.5
Q ss_pred ceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHH
Q psy6076 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAA 73 (188)
Q Consensus 24 e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~ 73 (188)
...+++++|..+.. +.+|.+.|.+..-.|.++. .+++++|+++..-
T Consensus 4 ~~~Ivv~~P~sy~D--a~~I~d~Lr~~~~VvvNL~--~ld~~~AqRivDF 49 (87)
T 3p04_A 4 QSTIVPVELHSFED--AQVIGGAFRDGDAVVFDMS--LLSREEARRIVDF 49 (87)
T ss_dssp CCSCEEEECSSGGG--HHHHHHHHHTTCCEEEECT--TSCHHHHHHHHHH
T ss_pred CcEEEEEecCcHHH--HHHHHHHHHCCCEEEEECC--CCCHHHHHHHHHH
Confidence 46789999999988 7899999998888888766 5789999988643
No 40
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=22.40 E-value=39 Score=24.25 Aligned_cols=32 Identities=16% Similarity=0.300 Sum_probs=24.8
Q ss_pred ecCHHHHHHHhHHhc------CCCchhhhhchhccCcE
Q psy6076 61 QADDKLLRTHYAALK------DKPFFESLIKYMSSGPV 92 (188)
Q Consensus 61 ~ls~~~a~~~y~~~~------~~~~~~~lv~~mtsGp~ 92 (188)
.+|++++.++..... |+-.|++++..|.+||.
T Consensus 117 ~ls~~e~~~l~~~~D~~~d~dG~I~~~EF~~~m~~~p~ 154 (159)
T 3i5g_C 117 RITEDQCNDIFTFCDIREDIDGNIKYEDLMKKVMAGPF 154 (159)
T ss_dssp CCCHHHHHHHHHHTTCCCCSSCCEEHHHHHHHHHHCSC
T ss_pred CCCHHHHHHHHHHhCcCCCCCCeEeHHHHHHHHHCCCC
Confidence 478999998887543 34579999999999984
Done!