RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6076
(188 letters)
>gnl|CDD|239876 cd04413, NDPk_I, Nucleoside diphosphate kinase Group I
(NDPk_I)-like: NDP kinase domains are present in a large
family of structurally and functionally conserved
proteins from bacteria to humans that generally catalyze
the transfer of gamma-phosphates of a nucleoside
triphosphate (NTP) donor onto a nucleoside diphosphate
(NDP) acceptor through a phosphohistidine intermediate.
The mammalian nm23/NDP kinase gene family can be divided
into two distinct groups. The group I genes encode
proteins that generally have highly homologous
counterparts in other organisms and possess the classic
enzymatic activity of a kinase. This group includes
vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its
counterparts in bacteria, archea and other eukaryotes.
NDP kinases exist in two different quaternary
structures; all known eukaryotic enzymes are hexamers,
while some bacterial enzymes are tetramers, as in
Myxococcus. They possess the NDP kinase active site
motif (NXXH[G/A]SD) and the nine residues that are most
essential for catalysis.
Length = 130
Score = 207 bits (530), Expect = 8e-70
Identities = 62/106 (58%), Positives = 80/106 (75%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
ERT ++IKPDGVQRGL+G+I+ RFE KG K++A+K +Q ++L HYA K KPFF L
Sbjct: 1 ERTLVIIKPDGVQRGLIGEIISRFERKGLKIVALKMLQLTEELAEEHYAEHKGKPFFPEL 60
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
+++M+SGPVV MV EG N +K R ++GATNPAD PGTIRGD L
Sbjct: 61 VEFMTSGPVVAMVLEGENAVKTVRKLMGATNPADAAPGTIRGDFAL 106
Score = 88.3 bits (220), Expect = 7e-23
Identities = 24/40 (60%), Positives = 33/40 (82%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
ERT ++IKPDGVQRGL+G+I+ RFE KG K++A+K +Q
Sbjct: 1 ERTLVIIKPDGVQRGLIGEIISRFERKGLKIVALKMLQLT 40
>gnl|CDD|201162 pfam00334, NDK, Nucleoside diphosphate kinase.
Length = 135
Score = 196 bits (500), Expect = 3e-65
Identities = 59/106 (55%), Positives = 79/106 (74%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
ERT ++IKPD VQRGL+G+I+ RFE+KGFK++A+K +Q + HYA K KPFF L
Sbjct: 1 ERTLVIIKPDAVQRGLIGEIISRFEKKGFKIVALKMLQLTREQAEEHYAEHKGKPFFPGL 60
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
+++M+SGPVV MV EG N + V R ++GATNPA+ PGTIRGD +
Sbjct: 61 VEFMTSGPVVAMVLEGENAVSVVRELMGATNPAEAAPGTIRGDFAV 106
Score = 84.8 bits (211), Expect = 2e-21
Identities = 24/40 (60%), Positives = 34/40 (85%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
ERT ++IKPD VQRGL+G+I+ RFE+KGFK++A+K +Q
Sbjct: 1 ERTLVIIKPDAVQRGLIGEIISRFEKKGFKIVALKMLQLT 40
>gnl|CDD|173387 PTZ00093, PTZ00093, nucleoside diphosphate kinase, cytosolic;
Provisional.
Length = 149
Score = 192 bits (490), Expect = 1e-63
Identities = 69/110 (62%), Positives = 87/110 (79%)
Query: 22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
+ ERTFIM+KPDGVQRGLVG+I++RFE+KG+KL+A+K +Q ++ HY K KPFF
Sbjct: 1 SSERTFIMVKPDGVQRGLVGEIIKRFEKKGYKLVALKMLQPTPEIAEEHYKEHKGKPFFP 60
Query: 82 SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLV 131
L+KY+SSGPVV MVWEG NV+K GR +LGATNP + PGTIRGD C+ V
Sbjct: 61 GLVKYISSGPVVCMVWEGKNVVKQGRKLLGATNPLESAPGTIRGDFCVDV 110
Score = 82.8 bits (205), Expect = 1e-20
Identities = 28/41 (68%), Positives = 38/41 (92%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQA 186
+ ERTFIM+KPDGVQRGLVG+I++RFE+KG+KL+A+K +Q
Sbjct: 1 SSERTFIMVKPDGVQRGLVGEIIKRFEKKGYKLVALKMLQP 41
>gnl|CDD|179085 PRK00668, ndk, mulitfunctional nucleoside diphosphate
kinase/apyrimidinic endonuclease/3'-; Validated.
Length = 134
Score = 191 bits (489), Expect = 2e-63
Identities = 61/106 (57%), Positives = 79/106 (74%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
ERTF +IKPD VQRGL+G+I+ RFE+KG K++A+K +Q +L HYA K+KPFF L
Sbjct: 2 ERTFSIIKPDAVQRGLIGEIISRFEKKGLKIVALKMMQLSRELAEGHYAEHKEKPFFGEL 61
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
+++M+SGPVV MV EG N I R ++GATNPA+ PGTIRGD L
Sbjct: 62 VEFMTSGPVVVMVLEGENAIAKVRELMGATNPAEAAPGTIRGDFAL 107
Score = 85.9 bits (214), Expect = 7e-22
Identities = 24/41 (58%), Positives = 33/41 (80%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
ERTF +IKPD VQRGL+G+I+ RFE+KG K++A+K +Q
Sbjct: 2 ERTFSIIKPDAVQRGLIGEIISRFEKKGLKIVALKMMQLSR 42
>gnl|CDD|197791 smart00562, NDK, Enzymes that catalyze nonsubstrate specific
conversions of nucleoside diphosphates to nucleoside
triphosphates. These enzymes play important roles in
bacterial growth, signal transduction and pathogenicity.
Length = 135
Score = 178 bits (455), Expect = 2e-58
Identities = 55/106 (51%), Positives = 76/106 (71%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
ERT +IKPD VQRGL+G+I+ RFE KGFK++AMK +Q ++ YA + KPFF L
Sbjct: 1 ERTLAIIKPDAVQRGLIGEIISRFERKGFKIVAMKMLQLTEEQAEEFYAEHEGKPFFNDL 60
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
+++M+SGPVV MV EG + +K R+++G T+P + PGTIRGD L
Sbjct: 61 VEFMTSGPVVAMVLEGEDAVKTWRTLMGPTDPREAAPGTIRGDFGL 106
Score = 78.7 bits (195), Expect = 4e-19
Identities = 25/40 (62%), Positives = 32/40 (80%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
ERT +IKPD VQRGL+G+I+ RFE KGFK++AMK +Q
Sbjct: 1 ERTLAIIKPDAVQRGLIGEIISRFERKGFKIVAMKMLQLT 40
>gnl|CDD|223183 COG0105, Ndk, Nucleoside diphosphate kinase [Nucleotide transport
and metabolism].
Length = 135
Score = 177 bits (451), Expect = 9e-58
Identities = 59/103 (57%), Positives = 77/103 (74%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
ERT +IKPD V+RGL+G+I+ RFE+KG K++A+K VQ +L HYA K KPFF L
Sbjct: 3 ERTLSIIKPDAVKRGLIGEIISRFEKKGLKIVALKMVQLSRELAENHYAEHKGKPFFGEL 62
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
+++++SGPVV MV EG N I V R ++GATNPA+ PGTIRGD
Sbjct: 63 VEFITSGPVVAMVLEGENAISVVRKLMGATNPANAAPGTIRGD 105
Score = 80.7 bits (200), Expect = 8e-20
Identities = 23/40 (57%), Positives = 32/40 (80%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
ERT +IKPD V+RGL+G+I+ RFE+KG K++A+K VQ
Sbjct: 3 ERTLSIIKPDAVKRGLIGEIISRFEKKGLKIVALKMVQLS 42
>gnl|CDD|178228 PLN02619, PLN02619, nucleoside-diphosphate kinase.
Length = 238
Score = 155 bits (393), Expect = 1e-47
Identities = 64/108 (59%), Positives = 80/108 (74%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
ERTFI IKPDGVQRGL+ +I+ RFE KGFKL+A+K V + + HY LK++PFF L
Sbjct: 89 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKVVVPSKEFAQKHYHDLKERPFFNGL 148
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLV 131
++SSGPVV MVWEG VIK GR ++GAT+P PGTIRGDL ++V
Sbjct: 149 CDFLSSGPVVAMVWEGEGVIKYGRKLIGATDPQKSEPGTIRGDLAVVV 196
Score = 70.6 bits (173), Expect = 3e-15
Identities = 27/37 (72%), Positives = 32/37 (86%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFV 184
ERTFI IKPDGVQRGL+ +I+ RFE KGFKL+A+K V
Sbjct: 89 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKVV 125
>gnl|CDD|238335 cd00595, NDPk, Nucleoside diphosphate kinases (NDP kinases, NDPks):
NDP kinases, responsible for the synthesis of nucleoside
triphosphates (NTPs), are involved in numerous
regulatory processes associated with proliferation,
development, and differentiation. They are vital for
DNA/RNA synthesis, cell division, macromolecular
metabolism and growth. The enzymes generate NTPs or
their deoxy derivatives by terminal (gamma)
phosphotransfer from an NTP such as ATP or GTP to any
nucleoside diphosphate (NDP) or its deoxy derivative.
The sequence of NDPk has been highly conserved through
evolution. There is a single histidine residue conserved
in all known NDK isozymes, which is involved in the
catalytic mechanism. The first confirmed metastasis
suppressor gene was the NDP kinase protein encoded by
the nm23 gene. Unicellular organisms generally possess
only one gene encoding NDP kinase, while most
multicellular organisms possess not only an ortholog
that provides most of the NDP kinase enzymatic activity
but also multiple divergent paralogous genes. The human
genome codes for at least nine NDP kinases and can be
classified into two groups, Groups I and II, according
to their genomic architecture and distinct enzymatic
activity. Group I isoforms (A-D) are well-conserved,
catalytically active, and share 58-88% identity between
each other, while Group II are more divergent, with only
NDPk6 shown to be active. NDP kinases exist in two
different quaternary structures; all known eukaryotic
enzymes are hexamers, while some bacterial enzymes are
tetramers, as in Myxococcus. The hexamer can be viewed
as trimer of dimers, while tetramers are dimers of
dimers, with the dimerization interface conserved.
Length = 133
Score = 133 bits (336), Expect = 2e-40
Identities = 46/109 (42%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
ERT +IKPD V GL+G+I+ R E+ GF+++AMK + ++ Y K +PFF L
Sbjct: 1 ERTLALIKPDAVAEGLLGEIIMRIEDAGFEIVAMKELHLTEEQAEEFYVEHKGRPFFPDL 60
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCI---PGTIRGDLCL 129
+++MSSGPVV M+ E N + R MLG TNP PG++R D
Sbjct: 61 VQFMSSGPVVAMILEKDNAVGEWREMLGPTNPEIARHLAPGSLRADFGT 109
Score = 59.7 bits (145), Expect = 6e-12
Identities = 19/40 (47%), Positives = 28/40 (70%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
ERT +IKPD V GL+G+I+ R E+ GF+++AMK +
Sbjct: 1 ERTLALIKPDAVAEGLLGEIIMRIEDAGFEIVAMKELHLT 40
>gnl|CDD|184733 PRK14540, PRK14540, nucleoside diphosphate kinase; Provisional.
Length = 134
Score = 131 bits (331), Expect = 1e-39
Identities = 55/107 (51%), Positives = 74/107 (69%)
Query: 23 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFES 82
KERTF+ +KPD V+R L+GKI+QRFE KGF+++ MK ++ ++ +Y K K F+E
Sbjct: 2 KERTFVALKPDAVERKLIGKIIQRFENKGFEIVEMKMLKLTREMAEEYYEEHKGKEFYER 61
Query: 83 LIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
LI +M+SG +V MV EG N I R M+G TNPA+ PGTIRGD L
Sbjct: 62 LINFMTSGRIVAMVIEGENAISTVRKMIGKTNPAEAEPGTIRGDFGL 108
Score = 61.8 bits (150), Expect = 1e-12
Identities = 23/41 (56%), Positives = 33/41 (80%)
Query: 147 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
KERTF+ +KPD V+R L+GKI+QRFE KGF+++ MK ++
Sbjct: 2 KERTFVALKPDAVERKLIGKIIQRFENKGFEIVEMKMLKLT 42
>gnl|CDD|184734 PRK14545, PRK14545, nucleoside diphosphate kinase; Provisional.
Length = 139
Score = 107 bits (269), Expect = 3e-30
Identities = 43/100 (43%), Positives = 62/100 (62%)
Query: 25 RTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLI 84
RTF MIKPD V+ G +G I+ GF+++AMK Q T YA ++PF+ L+
Sbjct: 5 RTFTMIKPDAVENGHIGGILDMITAAGFRIVAMKLTQLTVADAETFYAVHAERPFYGELV 64
Query: 85 KYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIR 124
++MS GP+V + E N ++ R+++GATNPAD GTIR
Sbjct: 65 EFMSRGPIVAAILEKENAVEDFRTLIGATNPADAAEGTIR 104
Score = 52.6 bits (126), Expect = 3e-09
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 149 RTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQ 185
RTF MIKPD V+ G +G I+ GF+++AMK Q
Sbjct: 5 RTFTMIKPDAVENGHIGGILDMITAAGFRIVAMKLTQ 41
>gnl|CDD|237749 PRK14543, PRK14543, nucleoside diphosphate kinase; Provisional.
Length = 169
Score = 103 bits (257), Expect = 3e-28
Identities = 47/109 (43%), Positives = 66/109 (60%), Gaps = 5/109 (4%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHY-----AALKDKP 78
++T +IKPDGV+RGL+G +V RFE G K++A K + D + HY A +
Sbjct: 6 QKTLCIIKPDGVRRGLIGNVVSRFERVGLKIVAAKMLLVDRSMAEKHYLYDDIAVRHGEA 65
Query: 79 FFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDL 127
++SLIK++SS PV V EG+ ++V R G+T P IPGTIRGD
Sbjct: 66 VWKSLIKFISSSPVFVFVVEGVESVEVVRKFCGSTEPKLAIPGTIRGDF 114
Score = 53.0 bits (127), Expect = 4e-09
Identities = 20/40 (50%), Positives = 29/40 (72%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
++T +IKPDGV+RGL+G +V RFE G K++A K + D
Sbjct: 6 QKTLCIIKPDGVRRGLIGNVVSRFERVGLKIVAAKMLLVD 45
>gnl|CDD|173010 PRK14544, PRK14544, nucleoside diphosphate kinase; Provisional.
Length = 183
Score = 99.9 bits (249), Expect = 8e-27
Identities = 50/136 (36%), Positives = 74/136 (54%), Gaps = 33/136 (24%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKD------- 76
ERT +++KPD V+RGLVG+I+ RFE+ G K++AMK V+A + + Y + ++
Sbjct: 4 ERTLVILKPDAVKRGLVGEIISRFEKAGLKIVAMKMVKATPEQIERFYPSSEEWYRSVGN 63
Query: 77 --------------------------KPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSML 110
K ESL+KYM+SGP+V MV +G ++V R ++
Sbjct: 64 KLLKAYQELGIDPRARLGTDDPVEVGKKVKESLVKYMTSGPIVAMVLKGNRAVEVVRKLV 123
Query: 111 GATNPADCIPGTIRGD 126
G T+P PGTIRGD
Sbjct: 124 GPTSPHKAPPGTIRGD 139
Score = 63.7 bits (155), Expect = 6e-13
Identities = 23/39 (58%), Positives = 33/39 (84%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQA 186
ERT +++KPD V+RGLVG+I+ RFE+ G K++AMK V+A
Sbjct: 4 ERTLVILKPDAVKRGLVGEIISRFEKAGLKIVAMKMVKA 42
>gnl|CDD|173008 PRK14542, PRK14542, nucleoside diphosphate kinase; Provisional.
Length = 137
Score = 95.1 bits (236), Expect = 2e-25
Identities = 43/102 (42%), Positives = 63/102 (61%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
RTFIMIKPDGV+ VG I+QR E++GFK++ +K+++ + + Y +PF+ L
Sbjct: 2 SRTFIMIKPDGVKNKHVGNILQRIEKEGFKILGLKYLKLSLEDAKQFYKVHSARPFYNDL 61
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRG 125
YMSSGP+V E N + R ++GAT+P + GTIR
Sbjct: 62 CNYMSSGPIVAAALERDNAVLHWREVIGATDPKEAAAGTIRA 103
Score = 54.7 bits (131), Expect = 5e-10
Identities = 21/38 (55%), Positives = 31/38 (81%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQ 185
RTFIMIKPDGV+ VG I+QR E++GFK++ +K+++
Sbjct: 2 SRTFIMIKPDGVKNKHVGNILQRIEKEGFKILGLKYLK 39
>gnl|CDD|173007 PRK14541, PRK14541, nucleoside diphosphate kinase; Provisional.
Length = 140
Score = 95.0 bits (236), Expect = 2e-25
Identities = 39/101 (38%), Positives = 67/101 (66%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
ERT ++KPD V++ L+G ++ + E GF+++AMK + + YA +++PF+ L
Sbjct: 2 ERTLTILKPDCVRKQLIGAVIDKIERAGFRVVAMKKTRLTKETAGEFYAVHRERPFYGEL 61
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIR 124
+++MSSGP VPM+ E N + R+++GAT+PA+ GT+R
Sbjct: 62 VEFMSSGPCVPMILEKENAVADFRTLIGATDPAEAAEGTVR 102
Score = 42.6 bits (100), Expect = 1e-05
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMK 182
ERT ++KPD V++ L+G ++ + E GF+++AMK
Sbjct: 2 ERTLTILKPDCVRKQLIGAVIDKIERAGFRVVAMK 36
>gnl|CDD|215503 PLN02931, PLN02931, nucleoside diphosphate kinase family protein.
Length = 177
Score = 77.9 bits (192), Expect = 2e-18
Identities = 37/110 (33%), Positives = 57/110 (51%)
Query: 5 LLVCFLLQCALYATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 64
LL+ ++ + +ERT MIKPDG+ +I + E GF ++ Q D+
Sbjct: 11 LLLLASFPIRCSSSGASEEERTLAMIKPDGLSGNYTERIKEVILESGFSIVKEMTTQLDE 70
Query: 65 KLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATN 114
YA + FF SL+KYM+SGPV+ MV E N + R+++G T+
Sbjct: 71 DRASLFYAEHSSRSFFPSLVKYMTSGPVLVMVLEKENAVSDWRTLIGPTD 120
Score = 36.3 bits (84), Expect = 0.003
Identities = 19/69 (27%), Positives = 30/69 (43%)
Query: 119 IPGTIRGDLCLLVCCLLQCALYATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKL 178
I + L LL+ ++ + +ERT MIKPDG+ +I + E GF +
Sbjct: 1 ISRSTLQPLFLLLLASFPIRCSSSGASEEERTLAMIKPDGLSGNYTERIKEVILESGFSI 60
Query: 179 IAMKFVQAD 187
+ Q D
Sbjct: 61 VKEMTTQLD 69
>gnl|CDD|239878 cd04415, NDPk7A, Nucleoside diphosphate kinase 7 domain A (NDPk7A):
The nm23-H7 class of nucleoside diphosphate kinase
(NDPk7) consists of an N-terminal DM10 domain and two
functional catalytic NDPk modules, NDPk7A and NDPk7B.
The function of the DM10 domain, which also occurs in
multiple copies in other proteins, is unknown. NDPk7 is
predominantly expressed in testes, although appreciable
amount are also found in liver, heart, brain, ovary,
small intestine and spleen. The nm23-H7 gene is located
in or near the hereditary prostrate cancer
susceptibility locus. Nm23-H7 may be involved in the
development of colon and gastric carcinoma, the latter
possibly in a type-specific manner.
Length = 131
Score = 71.7 bits (176), Expect = 2e-16
Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 5/105 (4%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
E+T +IKPD + +GKI+Q E+ GF + K + K + YA + KPF+ L
Sbjct: 1 EKTLALIKPDAYSK--IGKIIQIIEDAGFTITKAKMTKLSRKEAQDFYAEHQSKPFYNEL 58
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADC---IPGTIRG 125
+++M+SGP+V M G + I R +LG TN + P +IR
Sbjct: 59 VQFMTSGPIVAMELVGDDAISEWRKLLGPTNSSVARSDAPNSIRA 103
Score = 34.0 bits (78), Expect = 0.014
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFV 184
E+T +IKPD + +GKI+Q E+ GF + K
Sbjct: 1 EKTLALIKPDAYSK--IGKIIQIIEDAGFTITKAKMT 35
>gnl|CDD|239875 cd04412, NDPk7B, Nucleoside diphosphate kinase 7 domain B (NDPk7B):
The nm23-H7 class of nucleoside diphosphate kinase
(NDPk7) consists of an N-terminal DM10 domain and two
functional catalytic NDPk modules, NDPk7A and NDPk7B.
The function of the DM10 domain, which also occurs in
multiple copies in other proteins, is unknown. NDPk7 is
predominantly expressed in testes, although appreciable
amount are also found in liver, heart, brain, ovary,
small intestine and spleen. The nm23-H7 gene is located
in or near the hereditary prostrate cancer
susceptibility locus. Nm23-H7 may be involved in the
development of colon and gastric carcinoma, the latter
possibly in a type-specific manner.
Length = 134
Score = 67.7 bits (166), Expect = 6e-15
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 25 RTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKD-KPFFESL 83
T +IKP V GL+G+I+Q+ ++GF++ A++ K P ++
Sbjct: 2 CTVCIIKPHAVSHGLLGEILQQILDEGFEITALQMFNLTRANAEEFLEVYKGVVPELPAM 61
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPAD---CIPGTIRG 125
+ ++SGP + + G N +K R G +P P T+R
Sbjct: 62 VDELTSGPCIALEIAGENAVKTFREFCGPFDPEIAKQLRPNTLRA 106
Score = 38.8 bits (91), Expect = 3e-04
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 149 RTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
T +IKP V GL+G+I+Q+ ++GF++ A++
Sbjct: 2 CTVCIIKPHAVSHGLLGEILQQILDEGFEITALQMFNLTR 41
>gnl|CDD|239877 cd04414, NDPk6, Nucleoside diphosphate kinase 6 (NDP kinase 6,
NDPk6, NM23-H6; NME6; Inhibitor of p53-induced
apoptosis-alpha, IPIA-alpha): The nm23-H6 gene encoding
NDPk6 is expressed mainly in mitochondria, but also
found at a lower level in most tissues. NDPk6 has all
nine residues considered crucial for enzyme structure
and activity, and has been found to have NDP kinase
activity. It may play a role in cell growth and cell
cycle progression. The nm23-H6 gene locus has been
implicated in a variety of malignant tumors.
Length = 135
Score = 65.1 bits (159), Expect = 7e-14
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 24 ERTFIMIKPDGVQRGLV-GKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFES 82
+ T +IKPD V L + Q GF ++ K ++ + YA K K F++
Sbjct: 1 QLTLALIKPDAVAHPLALEAVRQLILSNGFTIVRKKELRWTTEDAERFYAEHKGKFFYDR 60
Query: 83 LIKYMSSGPVVPMVWEGLNVIKVGRSMLGATN---PADCIPGTIRG 125
L+ +M+SGP ++ N IK R+++G T P +IRG
Sbjct: 61 LVSFMTSGPSWALILAHENAIKTWRALMGPTKVFRARASAPDSIRG 106
Score = 27.4 bits (61), Expect = 3.0
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 148 ERTFIMIKPDGVQRGLV-GKIVQRFEEKGFKLIAMKFVQ 185
+ T +IKPD V L + Q GF ++ K ++
Sbjct: 1 QLTLALIKPDAVAHPLALEAVRQLILSNGFTIVRKKELR 39
>gnl|CDD|239880 cd04418, NDPk5, Nucleoside diphosphate kinase homolog 5 (NDP kinase
homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced
apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is
almost exclusively found in testis, especially in the
flagella of spermatids and spermatozoa, in association
with axoneme microtubules, and may play a role in
spermatogenesis by increasing the ability of late-stage
spermatids to eliminate reactive oxygen species. It
belongs to the nm23 Group II genes and appears to differ
from the other human NDPks in that it lacks two
important catalytic site residues, and thus does not
appear to possess NDP kinase activity. NDPk5 confers
protection from cell death by Bax and alters the
cellular levels of several antioxidant enzymes,
including glutathione peroxidase 5 (Gpx5).
Length = 132
Score = 64.0 bits (156), Expect = 2e-13
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
ERT +IKPD V + +I E GF ++ + +Q + YA K FF L
Sbjct: 1 ERTLAIIKPDAVHK--AEEIEDIILESGFTIVQKRKLQLSPEQCSDFYAEHYGKMFFPHL 58
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATN 114
+ YMSSGP+V MV N I + +LG TN
Sbjct: 59 VAYMSSGPIVAMVLARHNAISYWKELLGPTN 89
Score = 29.7 bits (67), Expect = 0.47
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
ERT +IKPD V + +I E GF ++ + +Q
Sbjct: 1 ERTLAIIKPDAVHK--AEEIEDIILESGFTIVQKRKLQLS 38
>gnl|CDD|239879 cd04416, NDPk_TX, NDP kinase domain of thioredoxin
domain-containing proteins (TXNDC3 and TXNDC6): Txl-2
(TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of
Group II N-terminal thioredoxin domains followed by one
or three NDP kinase domains, respectively. Sptrx-2,
which has a tissue specific distribution in human
testis, has been considered as a member of the nm23
family (nm23-H8) and exhibits a high homology with sea
urchin IC1 (intermediate chain-1) protein, a component
of the sperm axonemal outer dynein arm complex. Txl-2 is
mainly represented in close association with
microtubules within tissues with cilia and flagella such
as seminiferous epithelium (spermatids) and lung airway
epithelium, suggesting possible role in control of
microtubule stability and maintenance.
Length = 132
Score = 55.7 bits (135), Expect = 2e-10
Identities = 28/93 (30%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
E T +IKPD V +I+++ +E GF+++A K + ++ R Y +++ +FE L
Sbjct: 1 EYTLALIKPDAVAEK-KDEILEKIKEAGFEILAQKEMVLTEEQAREFYKEHEEEDYFEDL 59
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPA 116
+++M+SGP + +V N ++ R ++G T+P
Sbjct: 60 VEFMTSGPSLILVLSKENAVEEWRELMGPTDPE 92
Score = 25.6 bits (57), Expect = 9.7
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMK 182
E T +IKPD V +I+++ +E GF+++A K
Sbjct: 1 EYTLALIKPDAVAEK-KDEILEKIKEAGFEILAQK 34
>gnl|CDD|237215 PRK12815, carB, carbamoyl phosphate synthase large subunit;
Reviewed.
Length = 1068
Score = 29.6 bits (67), Expect = 0.98
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 21 PNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIA 56
P+ FI ++ + V K+ +RF + GFKL+A
Sbjct: 935 PSYGTIFISVRDEDKPE--VTKLARRFAQLGFKLLA 968
Score = 29.6 bits (67), Expect = 0.98
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 145 PNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIA 180
P+ FI ++ + V K+ +RF + GFKL+A
Sbjct: 935 PSYGTIFISVRDEDKPE--VTKLARRFAQLGFKLLA 968
>gnl|CDD|172879 PRK14403, PRK14403, membrane protein; Provisional.
Length = 196
Score = 28.8 bits (64), Expect = 1.4
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 79 FFESLIKYMSSGP---VVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLV 131
F L ++ S P ++P +G++V KVG +GATN A G + G +CLL+
Sbjct: 5 LFPILGYFIGSIPFSYLIPKWLKGIDVRKVGSGNVGATN-AIRTTGPVVGGICLLL 59
>gnl|CDD|234977 PRK01741, PRK01741, cell division protein ZipA; Provisional.
Length = 332
Score = 28.9 bits (65), Expect = 1.4
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 17 ATASPNKERTFIM---IKPDGVQ-RGLVGKIVQRFEEKGF 52
A P FIM + P+ Q +G +VQ E GF
Sbjct: 194 TEAQPEATTNFIMLYVVAPENQQFQG--AYLVQALENLGF 231
Score = 28.9 bits (65), Expect = 1.4
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 141 ATASPNKERTFIM---IKPDGVQ-RGLVGKIVQRFEEKGF 176
A P FIM + P+ Q +G +VQ E GF
Sbjct: 194 TEAQPEATTNFIMLYVVAPENQQFQG--AYLVQALENLGF 231
>gnl|CDD|191251 pfam05283, MGC-24, Multi-glycosylated core protein 24 (MGC-24).
This family consists of several MGC-24 (or Cd164
antigen) proteins from eukaryotic organisms.
MGC-24/CD164 is a sialomucin expressed in many normal
and cancerous tissues. In humans, soluble and
transmembrane forms of MGC-24 are produced by
alternative splicing.
Length = 187
Score = 28.8 bits (64), Expect = 1.5
Identities = 8/27 (29%), Positives = 9/27 (33%)
Query: 120 PGTIRGDLCLLVCCLLQCALYATASPN 146
+ LCL CLL PN
Sbjct: 3 RRALWAALCLGALCLLAAGSNWAQLPN 29
>gnl|CDD|218866 pfam06039, Mqo, Malate:quinone oxidoreductase (Mqo). This family
consists of several bacterial Malate:quinone
oxidoreductase (Mqo) proteins (EC:1.1.99.16). Mqo takes
part in the citric acid cycle. It oxidises L-malate to
oxaloacetate and donates electrons to ubiquinone-1 and
other artificial acceptors or, via the electron transfer
chain, to oxygen. NAD is not an acceptor and the natural
direct acceptor for the enzyme is most likely a quinone.
The enzyme is therefore called malate:quinone
oxidoreductase, abbreviated to Mqo. Mqo is a peripheral
membrane protein and can be released from the membrane
by addition of chelators.
Length = 489
Score = 28.4 bits (64), Expect = 2.5
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 57 MKFVQADD--KLLRTHYAALKDKPFFE 81
M FV +D L+ Y ALK P FE
Sbjct: 114 MSFVWGEDNVAFLKKRYEALKQNPLFE 140
>gnl|CDD|179979 PRK05257, PRK05257, malate:quinone oxidoreductase; Validated.
Length = 494
Score = 28.2 bits (64), Expect = 2.5
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 57 MKFVQADD--KLLRTHYAALKDKPFFES 82
M FV +D L+ Y ALK P F
Sbjct: 115 MSFVWGEDNVAFLKKRYEALKANPLFAG 142
>gnl|CDD|222018 pfam13274, DUF4065, Protein of unknown function (DUF4065). This
family of proteins is functionally uncharacterized.
This family of proteins is found in bacteria, archaea
and viruses. Proteins in this family are typically
between 155 and 202 amino acids in length.
Length = 99
Score = 26.9 bits (60), Expect = 2.8
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 70 HYAALKDKPFFESLIKYMSSGPVVPMVWE 98
A KP F + GPVVP V++
Sbjct: 11 WSLAKYGKPLFGEDFEAWKYGPVVPEVYD 39
>gnl|CDD|197307 cd09073, ExoIII_AP-endo, Escherichia coli exonuclease III
(ExoIII)-like apurinic/apyrimidinic (AP) endonucleases.
The ExoIII family AP endonucleases belong to the large
EEP (exonuclease/endonuclease/phosphatase) superfamily
that contains functionally diverse enzymes that share a
common catalytic mechanism of cleaving phosphodiester
bonds. AP endonucleases participate in the DNA base
excision repair (BER) pathway. AP sites are one of the
most common lesions in cellular DNA. During BER, the
damaged DNA is first recognized by DNA glycosylase. AP
endonucleases then catalyze the hydrolytic cleavage of
the phosphodiester bond 5' to the AP site, which is then
followed by the coordinated actions of DNA polymerase,
deoxyribose phosphatase, and DNA ligase. If left
unrepaired, AP sites block DNA replication, which have
both mutagenic and cytotoxic effects. AP endonucleases
can carry out a wide range of excision and incision
reactions on DNA, including 3'-5' exonuclease,
3'-deoxyribose phosphodiesterase, 3'-phosphatase, and
occasionally, nonspecific DNase activities. Different AP
endonuclease enzymes catalyze the different reactions
with different efficiences. Many organisms have two
functional AP endonucleases, for example, APE1/Ref-1 and
Ape2 in humans, Apn1 and Apn2 in bakers yeast, Nape and
NExo in Neisseria meningitides, and exonuclease III
(ExoIII) and endonuclease IV (EndoIV) in Escherichia
coli. Usually, one of the two is the dominant AP
endonuclease, the other has weak AP endonuclease
activity, but exhibits strong 3'-5' exonuclease,
3'-deoxyribose phosphodiesterase, and 3'-phosphatase
activities. Class II AP endonucleases have been
classified into two families, designated ExoIII and
EndoIV, based on their homology to the Escherichia coli
enzymes. This family contains the ExoIII family; the
EndoIV family belongs to a different superfamily.
Length = 251
Score = 28.0 bits (63), Expect = 3.0
Identities = 24/84 (28%), Positives = 30/84 (35%), Gaps = 9/84 (10%)
Query: 26 TFIMIKPDGVQRGLVGKI------VQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPF 79
T +P V G+ G+ V E F LI + F L R Y + F
Sbjct: 69 TLSKEEPLDVSYGIGGEEFDSEGRVITAEFDDFYLINVYFPNGGRGLERLDYKLRFYEAF 128
Query: 80 FESLIKYMSSGPVVPMVWEG-LNV 102
E L K G P+V G NV
Sbjct: 129 LEFLEKLRKRGK--PVVICGDFNV 150
>gnl|CDD|181975 PRK09591, celC, cellobiose phosphotransferase system IIA
component; Reviewed.
Length = 104
Score = 26.7 bits (59), Expect = 3.8
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 27 FIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALK 75
F +I G R V + E F L K Q++++LL H+A K
Sbjct: 11 FEIILHSGNARTEVHEAFAAMREGNFDLAEQKLNQSNEELLEAHHAQTK 59
>gnl|CDD|132594 TIGR03555, F420_mer, 5,10-methylenetetrahydromethanopterin
reductase. Members of this protein family are
5,10-methylenetetrahydromethanopterin reductase, an
F420-dependent enzyme of methanogenesis. It is
restricted to the Archaea [Energy metabolism,
Methanogenesis].
Length = 325
Score = 27.5 bits (61), Expect = 4.1
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 53 KLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGA 112
+L+A K V+ D + ++ A L K S+ YM G P + + I G ++ A
Sbjct: 121 QLLAGKKVEYDGEYVKFAGAKLGFKAIQGSIPIYM--GAQGPKMLKTAGEIADG-VLINA 177
Query: 113 TNPAD 117
+NP D
Sbjct: 178 SNPKD 182
>gnl|CDD|130691 TIGR01630, psiM2_ORF9, phage uncharacterized protein (putative
large terminase), C-terminal domain. This model
represents the C-terminal region of a set of phage
proteins typically about 400-500 amino acids in length,
although some members are considerably shorter. An
article on Methanobacterium phage Psi-M2 (PMID:9791169)
calls the member from that phage, ORF9, a putative large
terminase subunit, and ORF8 a candidate terminase small
subunit. Most proteins in this family have an apparent
P-loop nucleotide-binding sequence toward the N-terminus
[Mobile and extrachromosomal element functions, Prophage
functions].
Length = 142
Score = 27.1 bits (60), Expect = 4.1
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 11/66 (16%)
Query: 36 QRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPM 95
+ +V+ +EKG + A + DK R S+ ++ +G V P
Sbjct: 55 GKSFGRSLVKILKEKGIRTPARAVYPSGDKETR-----------ILSVAPWVEAGNVFPP 103
Query: 96 VWEGLN 101
W
Sbjct: 104 NWAPWW 109
>gnl|CDD|165400 PHA03128, PHA03128, dUTPase; Provisional.
Length = 376
Score = 27.6 bits (61), Expect = 4.3
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 8/49 (16%)
Query: 120 PGTIRGDLCLLVC-CLLQCALYATASPNKERTF-------IMIKPDGVQ 160
PGTI GD+ + C C L PN+ F I+I+P Q
Sbjct: 180 PGTIEGDIGVFPCFCPEPWQLMNIPPPNEHYFFGLRTRQTIIIQPGHTQ 228
>gnl|CDD|223660 COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication,
recombination, and repair].
Length = 1139
Score = 27.6 bits (62), Expect = 4.4
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 10/59 (16%)
Query: 27 FIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIK 85
IK GV + +IV+ +EK FK +D R L K ESLIK
Sbjct: 825 LGAIK--GVGEDAIEEIVEARKEKPFK-------SLEDFCDRIDRKGLN-KRVLESLIK 873
>gnl|CDD|235065 PRK02733, PRK02733, photosystem I reaction center subunit IX;
Provisional.
Length = 42
Score = 25.0 bits (55), Expect = 4.9
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 83 LIKYMSSGPVVPMVW 97
L K++S+ PVV +W
Sbjct: 4 LTKFLSTAPVVAAIW 18
>gnl|CDD|130393 TIGR01326, OAH_OAS_sulfhy, OAH/OAS sulfhydrylase. This model
describes a distinct clade of the Cys/Met metabolism
pyridoxal phosphate-dependent enzyme superfamily.
Members include examples of OAH/OAS sulfhydrylase, an
enzyme with activity both as O-acetylhomoserine (OAH)
sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS)
sulphydrylase (EC 2.5.1.47). An alternate name for OAH
sulfhydrylase is homocysteine synthase. This model is
designated subfamily because it may or may not have both
activities [Amino acid biosynthesis, Aspartate family,
Amino acid biosynthesis, Serine family].
Length = 418
Score = 27.3 bits (61), Expect = 5.1
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 44 VQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGP 91
++R E K+ +F++A K+ +Y L P KY+ G
Sbjct: 288 MERHVENALKV--AEFLEAHPKVAWVNYPGLASHPHHALAKKYLPKGF 333
>gnl|CDD|145055 pfam01701, PSI_PsaJ, Photosystem I reaction centre subunit IX /
PsaJ. This family consists of the photosystem I
reaction centre subunit IX or PsaJ from various
organisms including Synechocystis sp. (strain pcc 6803),
Pinus thunbergii (green pine) and Zea mays (maize). PsaJ
is a small 4.4kDa, chloroplastal encoded, hydrophobic
subunit of the photosystem I reaction complex its
function is not yet fully understood. PsaJ can be
cross-linked to PsaF and has a single predicted
transmembrane domain it has a proposed role in
maintaining PsaF in the correct orientation to allow for
fast electron transfer from soluble donor proteins to
P700+.
Length = 37
Score = 24.6 bits (54), Expect = 6.9
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 82 SLIKYMSSGPVVPMVWEGL 100
KY+S+ PV+ +W
Sbjct: 3 DFKKYLSTAPVLATLWLTF 21
>gnl|CDD|185326 PRK15428, PRK15428, putative propanediol utilization protein PduM;
Provisional.
Length = 163
Score = 26.5 bits (59), Expect = 7.6
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
Query: 35 VQRGLVGKIV---QRFEEKGFKLIAMKFVQADDKLLRTHYAALK----DKPFFESLIKYM 87
+QR +V ++V QR + L + AD L +A+L+ D P L +
Sbjct: 6 LQR-IVEEVVARLQRRAQSTATLSVAQLRDADSPTLFCQHASLRILLVDLPLLRQLAEAD 64
Query: 88 SSGPVVPMVWEGL 100
+S P + E L
Sbjct: 65 TSDPAARKIHEAL 77
>gnl|CDD|132883 cd07062, Peptidase_S66_mccF_like, Microcin C7 self-immunity
protein determines resistance to exogenous microcin C7.
Microcin C7 self-immunity protein (mccF): MccF, a
homolog of the LD-carboxypeptidase family, mediates
resistance against exogenously added microcin C7
(MccC7), a ribosomally-encoded peptide antibiotic that
contains a phosphoramidate linkage to adenosine
monophosphate at its C-terminus. The plasmid-encoded
mccF gene is transcribed in the opposite direction to
the other five genes (mccA-E) and is required for the
full expression of immunity but not for production. The
catalytic triad residues (Ser, His, Glu) of
LD-carboxypeptidase are also conserved in MccF,
strongly suggesting that MccF shares the hydrolytic
activity with LD-carboxypeptidases. Substrates of MccF
have not been deduced, but could likely be microcin C7
precursors. The possible role of MccF is to defend
producer cells against exogenous microcin from
re-entering after having been exported. It is
suggested that MccF is involved in microcin degradation
or sequestration in the periplasm.
Length = 308
Score = 26.4 bits (59), Expect = 8.8
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 8/42 (19%)
Query: 44 VQRFEEKGFKLIAMKFVQADDKLLRTH--------YAALKDK 77
+R E GF+++ DK L AA D
Sbjct: 24 KKRLENLGFEVVEGPNALKGDKYLSASPEERAEELMAAFADP 65
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.142 0.427
Gapped
Lambda K H
0.267 0.0806 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,366,102
Number of extensions: 852000
Number of successful extensions: 1154
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1147
Number of HSP's successfully gapped: 72
Length of query: 188
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 97
Effective length of database: 6,901,388
Effective search space: 669434636
Effective search space used: 669434636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.2 bits)