RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6076
(188 letters)
>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding,
transferase, tumor suppressor; 2.10A {Homo sapiens}
Length = 172
Score = 220 bits (563), Expect = 2e-74
Identities = 76/108 (70%), Positives = 90/108 (83%)
Query: 22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+ +KF+QA + LL+ HY LKD+PFF
Sbjct: 23 NCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFA 82
Query: 82 SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
L+KYM SGPVV MVWEGLNV+K GR MLG TNPAD PGTIRGD C+
Sbjct: 83 GLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCI 130
Score = 93.5 bits (233), Expect = 1e-24
Identities = 30/43 (69%), Positives = 39/43 (90%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+ +KF+QA +
Sbjct: 23 NCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASE 65
>3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer, NM23
GEN, hexamer, activator, oncogene, ATP-binding, cell
cycle, DNA-binding; HET: DG DA; 1.30A {Homo sapiens}
SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R 3bbc_A
1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A* 1nsq_A*
1ndl_A*
Length = 151
Score = 219 bits (561), Expect = 2e-74
Identities = 76/108 (70%), Positives = 92/108 (85%)
Query: 22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+AMKF++A ++ L+ HY LKD+PFF
Sbjct: 2 NLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFP 61
Query: 82 SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
L+KYM+SGPVV MVWEGLNV+K GR MLG TNPAD PGTIRGD C+
Sbjct: 62 GLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCI 109
Score = 93.4 bits (233), Expect = 7e-25
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+AMKF++A +
Sbjct: 2 NLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASE 44
>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis,
transferase, struc genomics, structural genomics
consortium, SGC; HET: ADP; 2.30A {Homo sapiens} SCOP:
d.58.6.1
Length = 169
Score = 219 bits (561), Expect = 3e-74
Identities = 72/124 (58%), Positives = 96/124 (77%)
Query: 6 LVCFLLQCALYATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDK 65
LV + A + ERTF+ +KPDGVQR LVG+IV+RFE KGFKL+A+K VQA ++
Sbjct: 4 LVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEE 63
Query: 66 LLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRG 125
LLR HYA L+++PF+ L+KYM+SGPVV MVW+GL+V++ R+++GATNPAD PGTIRG
Sbjct: 64 LLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGTIRG 123
Query: 126 DLCL 129
D C+
Sbjct: 124 DFCI 127
Score = 94.6 bits (236), Expect = 4e-25
Identities = 32/62 (51%), Positives = 43/62 (69%), Gaps = 3/62 (4%)
Query: 130 LVCCLL---QCALYATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQA 186
++C +L A + ERTF+ +KPDGVQR LVG+IV+RFE KGFKL+A+K VQA
Sbjct: 1 MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQA 60
Query: 187 DD 188
+
Sbjct: 61 SE 62
>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta
sandwich, ATP-binding, magnesium, metal-B mitochondrion;
3.10A {Saccharomyces cerevisiae}
Length = 161
Score = 218 bits (559), Expect = 4e-74
Identities = 63/108 (58%), Positives = 82/108 (75%)
Query: 22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
ERTFI +KPDGVQRGLV +I+ RFE+KG+KL+A+K V+ADDKLL HYA KPFF
Sbjct: 12 QTERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADDKLLEQHYAEHVGKPFFP 71
Query: 82 SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
++ +M SGP++ VWEG +V++ GR++LGATNP PGTIRGD +
Sbjct: 72 KMVSFMKSGPILATVWEGKDVVRQGRTILGATNPLGSAPGTIRGDFGI 119
Score = 93.0 bits (232), Expect = 1e-24
Identities = 29/43 (67%), Positives = 37/43 (86%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
ERTFI +KPDGVQRGLV +I+ RFE+KG+KL+A+K V+ADD
Sbjct: 12 QTERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADD 54
>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid,
seattle structural genomics center for infect disease,
babesiosis; 2.50A {Babesia bovis}
Length = 156
Score = 218 bits (559), Expect = 5e-74
Identities = 57/108 (52%), Positives = 77/108 (71%)
Query: 22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
+ ERT+IM+KPDGVQRGL+G+I++RFE KG KLIA KF ++ HY KDKPFF+
Sbjct: 8 HMERTYIMVKPDGVQRGLIGEILKRFEMKGLKLIAAKFEHPTMDVVAQHYCEHKDKPFFK 67
Query: 82 SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
L ++S GPV M+WEG IK+GR+++G T+P + GTIRGD +
Sbjct: 68 DLCDFISHGPVFCMIWEGPEAIKIGRNLVGLTSPVESAAGTIRGDFGV 115
Score = 92.6 bits (231), Expect = 2e-24
Identities = 27/43 (62%), Positives = 34/43 (79%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
+ ERT+IM+KPDGVQRGL+G+I++RFE KG KLIA KF
Sbjct: 8 HMERTYIMVKPDGVQRGLIGEILKRFEMKGLKLIAAKFEHPTM 50
>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative,
structural genomics, SGPP; 3.05A {Plasmodium falciparum}
SCOP: d.58.6.1
Length = 157
Score = 218 bits (557), Expect = 8e-74
Identities = 62/110 (56%), Positives = 86/110 (78%)
Query: 20 SPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPF 79
+ E++FIMIKPDGVQRGLVG I++RFE+KG+KLIA+K + +++L+ HY L D+PF
Sbjct: 6 HHHMEKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPF 65
Query: 80 FESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
F++L+ Y+S GPVV MVWEG++++K GR ++G TNP GTIRGD CL
Sbjct: 66 FKNLVAYISKGPVVAMVWEGVDMVKQGRKLIGETNPLTSNTGTIRGDFCL 115
Score = 93.0 bits (232), Expect = 1e-24
Identities = 27/45 (60%), Positives = 37/45 (82%)
Query: 144 SPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
+ E++FIMIKPDGVQRGLVG I++RFE+KG+KLIA+K + +
Sbjct: 6 HHHMEKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTE 50
>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP;
2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB:
2az1_A 2zua_A
Length = 164
Score = 218 bits (557), Expect = 1e-73
Identities = 56/108 (51%), Positives = 77/108 (71%)
Query: 22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
+ ERTF+M+KPDGVQRGL+G IV R E KG K++ KF++ D++L HYA +DKPFF+
Sbjct: 7 HDERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFD 66
Query: 82 SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
L+ +++SGPV MVWEG + + R ++GAT+ D PGTIRGD
Sbjct: 67 GLVSFITSGPVFAMVWEGADATRQVRQLMGATDAQDAAPGTIRGDYGN 114
Score = 93.1 bits (232), Expect = 1e-24
Identities = 25/43 (58%), Positives = 34/43 (79%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
+ ERTF+M+KPDGVQRGL+G IV R E KG K++ KF++ D+
Sbjct: 7 HDERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDE 49
>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, giardiasis; 2.65A {Giardia lamblia}
Length = 155
Score = 217 bits (555), Expect = 1e-73
Identities = 62/111 (55%), Positives = 79/111 (71%)
Query: 19 ASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKP 78
S +ERTF+M+KPDGVQRGLVG+I+ RFE +GFKL+AMKF L+ HY +P
Sbjct: 3 GSMARERTFLMVKPDGVQRGLVGEIISRFERRGFKLVAMKFFVPSKNLVEEHYKEHAARP 62
Query: 79 FFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
FF L K++SSGPV MVWEG NV+ + R+M+G T PA+ PGTIRGD +
Sbjct: 63 FFAGLCKFLSSGPVCAMVWEGANVVSISRTMMGVTKPAESAPGTIRGDFGI 113
Score = 91.9 bits (229), Expect = 3e-24
Identities = 29/46 (63%), Positives = 36/46 (78%)
Query: 143 ASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
S +ERTF+M+KPDGVQRGLVG+I+ RFE +GFKL+AMKF
Sbjct: 3 GSMARERTFLMVKPDGVQRGLVGEIISRFERRGFKLVAMKFFVPSK 48
>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A
{Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A*
Length = 153
Score = 217 bits (555), Expect = 2e-73
Identities = 58/108 (53%), Positives = 77/108 (71%)
Query: 22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
+ E T+IM+KPDG+QRGLVG+I+ RFE+KGFKLI +K Q +L HY L K FF
Sbjct: 4 DVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFP 63
Query: 82 SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
+LI+Y++SGPVV M WEG+ V+ R ++G T+P PGTIRGDL +
Sbjct: 64 NLIEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAEPGTIRGDLAV 111
Score = 92.2 bits (230), Expect = 2e-24
Identities = 26/43 (60%), Positives = 34/43 (79%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
+ E T+IM+KPDG+QRGLVG+I+ RFE+KGFKLI +K Q
Sbjct: 4 DVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPK 46
>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta protein
family; HET: ADP; 2.22A {Staphylococcus aureus subsp}
PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A*
Length = 157
Score = 217 bits (555), Expect = 2e-73
Identities = 52/106 (49%), Positives = 73/106 (68%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
ERTF+MIKPD VQR L+G+++ R E KG KL+ K +Q +L THY + KPF+ L
Sbjct: 2 ERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDL 61
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
I +++S PV MV EG + + V R ++G+TNP++ PG+IRGDL L
Sbjct: 62 ISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGL 107
Score = 91.9 bits (229), Expect = 3e-24
Identities = 22/41 (53%), Positives = 29/41 (70%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
ERTF+MIKPD VQR L+G+++ R E KG KL+ K +Q
Sbjct: 2 ERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPM 42
>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN
hexamer structure, ATP-binding, magnesium, metal-
nucleotide metabolism; HET: TNM TNV; 1.65A
{Dictyostelium discoideum} PDB: 1b4s_A* 1mn9_A* 1f3f_A*
1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A*
1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A*
1hhq_A 1lwx_A* 1npk_A ...
Length = 155
Score = 217 bits (554), Expect = 2e-73
Identities = 55/108 (50%), Positives = 76/108 (70%)
Query: 22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K + L +HYA K++PFF
Sbjct: 7 NKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFG 66
Query: 82 SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
L+ +++SGPVV MV+EG V+ R M+G TNP PG+IRGD +
Sbjct: 67 GLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGV 114
Score = 92.6 bits (231), Expect = 2e-24
Identities = 24/43 (55%), Positives = 33/43 (76%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K +
Sbjct: 7 NKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTK 49
>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum
sativum} SCOP: d.58.6.1
Length = 182
Score = 217 bits (556), Expect = 2e-73
Identities = 59/108 (54%), Positives = 76/108 (70%)
Query: 22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
ERTFI IKPDGVQRGL+ +I+ RFE KGFKL+ +K + + + HY LK++PFF
Sbjct: 31 ELERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFFN 90
Query: 82 SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
L ++SSGPV+ MVWEG VI GR ++GAT+P PGTIRGDL +
Sbjct: 91 GLCDFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSAPGTIRGDLAV 138
Score = 93.1 bits (232), Expect = 2e-24
Identities = 25/43 (58%), Positives = 31/43 (72%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
ERTFI IKPDGVQRGL+ +I+ RFE KGFKL+ +K +
Sbjct: 31 ELERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTK 73
>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians,
transferase; 2.20A {Virgibacillus halodenitrificans}
SCOP: d.58.6.1
Length = 150
Score = 216 bits (553), Expect = 3e-73
Identities = 59/107 (55%), Positives = 70/107 (65%)
Query: 23 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFES 82
KERTF+M+KPDGVQR LVG++V+RFE KG KL K + HYA L PFF
Sbjct: 2 KERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGG 61
Query: 83 LIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
L+ +SGPV MVWEGLN R +LGATNP+D PGTIRGD +
Sbjct: 62 LVGGATSGPVFAMVWEGLNAAATARQILGATNPSDAAPGTIRGDFGV 108
Score = 91.8 bits (229), Expect = 3e-24
Identities = 25/42 (59%), Positives = 31/42 (73%)
Query: 147 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
KERTF+M+KPDGVQR LVG++V+RFE KG KL K +
Sbjct: 2 KERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISK 43
>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding,
metal-binding, phosphoprotein, nucleotide metabolism,
cytoplasm, magnesium; 2.0A {Bacillus anthracis}
Length = 148
Score = 216 bits (553), Expect = 3e-73
Identities = 52/106 (49%), Positives = 75/106 (70%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
E+TF+M+KPDGVQR +G+IV RFE+KGF+L+ K +Q ++ HYA ++KPFF L
Sbjct: 2 EKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHEEKPFFGEL 61
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
+ +++SGPV MVW+G V+ R+M+G T P + PGTIRGD +
Sbjct: 62 VDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGV 107
Score = 91.4 bits (228), Expect = 4e-24
Identities = 23/41 (56%), Positives = 32/41 (78%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
E+TF+M+KPDGVQR +G+IV RFE+KGF+L+ K +Q
Sbjct: 2 EKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTP 42
>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza
sativa} SCOP: d.58.6.1
Length = 150
Score = 216 bits (553), Expect = 3e-73
Identities = 60/106 (56%), Positives = 77/106 (72%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
E++FIMIKPDGVQRGL+G I+ RFE+KGF L MKF+ + + HYA L DKPFF L
Sbjct: 3 EQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGL 62
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
++Y+ SGPVV MVWEG +V+ GR ++GAT P + PGTIR D +
Sbjct: 63 VEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAV 108
Score = 91.5 bits (228), Expect = 5e-24
Identities = 26/41 (63%), Positives = 33/41 (80%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
E++FIMIKPDGVQRGL+G I+ RFE+KGF L MKF+ +
Sbjct: 3 EQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVER 43
>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial,
killer-O transferase; 2.40A {Homo sapiens} SCOP:
d.58.6.1
Length = 162
Score = 216 bits (553), Expect = 5e-73
Identities = 60/108 (55%), Positives = 81/108 (75%)
Query: 22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
+ERT + +KPDGVQR LVG ++QRFE +GF L+ MK +QA + +L HY L+ KPF+
Sbjct: 23 TRERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYP 82
Query: 82 SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
+LI+YMSSGPVV MVWEG NV++ R+M+G T+ A+ PGTIRGD +
Sbjct: 83 ALIRYMSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAAPGTIRGDFSV 130
Score = 92.7 bits (231), Expect = 2e-24
Identities = 24/43 (55%), Positives = 33/43 (76%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
+ERT + +KPDGVQR LVG ++QRFE +GF L+ MK +QA +
Sbjct: 23 TRERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPE 65
>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate,
transferase; 2.40A {Arabidopsis thaliana} SCOP: d.58.6.1
Length = 149
Score = 215 bits (551), Expect = 5e-73
Identities = 58/106 (54%), Positives = 74/106 (69%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
E+TFIMIKPDGVQRGL+G+++ RFE+KGF L +K + + HY L K FF L
Sbjct: 2 EQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGL 61
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
+ Y+ SGPVV M+WEG NV+ GR ++GATNPA PGTIRGD +
Sbjct: 62 VDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAASEPGTIRGDFAI 107
Score = 91.1 bits (227), Expect = 5e-24
Identities = 24/41 (58%), Positives = 33/41 (80%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
E+TFIMIKPDGVQRGL+G+++ RFE+KGF L +K + +
Sbjct: 2 EQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVER 42
>4fkx_A NDK B, nucleoside diphosphate kinase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: CDP; 1.70A {Trypanosoma brucei brucei} PDB: 4fky_A*
4f4a_A* 4f36_A* 3prv_A 3ngs_A 3ngr_A 3ngt_A* 3ngu_A*
Length = 161
Score = 215 bits (551), Expect = 8e-73
Identities = 63/106 (59%), Positives = 81/106 (76%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
ERTFI +KPDGVQR LVG+I++RFE KG+KL+ +K +Q ++ + HY L KPF+ L
Sbjct: 12 ERTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLLQPTEEQAKQHYIDLASKPFYSGL 71
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
+ Y SSGP+V MVWEGL V+K GR +LGATNPAD +PGTIRGD +
Sbjct: 72 VSYFSSGPIVGMVWEGLGVVKGGRVLLGATNPADSLPGTIRGDFAV 117
Score = 91.5 bits (228), Expect = 5e-24
Identities = 25/41 (60%), Positives = 34/41 (82%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
ERTFI +KPDGVQR LVG+I++RFE KG+KL+ +K +Q +
Sbjct: 12 ERTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLLQPTE 52
>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW,
emerald biostructures, encepha cuniculi, structural
genomics; 2.08A {Encephalitozoon cuniculi}
Length = 151
Score = 214 bits (548), Expect = 2e-72
Identities = 52/108 (48%), Positives = 71/108 (65%)
Query: 22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
+ ERTFIMIKPD ++R L+ +I+QRFEEKG L A K V ++L THY+ L PFF
Sbjct: 4 SMERTFIMIKPDAIKRRLISRIIQRFEEKGLYLAASKCVIPKREVLETHYSHLSSMPFFS 63
Query: 82 SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
+++ M SG V+ MVW G + + +GR ++G TNP GTIRGD +
Sbjct: 64 EMVEDMMSGMVLAMVWVGKDAVSIGRKLIGETNPQAASVGTIRGDYGV 111
Score = 91.4 bits (228), Expect = 4e-24
Identities = 24/43 (55%), Positives = 30/43 (69%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
+ ERTFIMIKPD ++R L+ +I+QRFEEKG L A K V
Sbjct: 4 SMERTFIMIKPDAIKRRLISRIIQRFEEKGLYLAASKCVIPKR 46
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.00A {Thermus thermophilus} SCOP:
d.58.6.1 PDB: 1wkk_A* 1wkl_A*
Length = 137
Score = 212 bits (542), Expect = 9e-72
Identities = 59/106 (55%), Positives = 79/106 (74%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
ERTF+MIKPDGV+RGLVG+I+ RFE KGF++ A+K +Q +L HYA ++KPFF L
Sbjct: 2 ERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPGL 61
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
+++++SGPVV MV EG V+ R M+GAT+P D +PGTIRGD
Sbjct: 62 VRFITSGPVVAMVLEGPGVVAEVRKMMGATHPKDALPGTIRGDFAT 107
Score = 89.9 bits (224), Expect = 1e-23
Identities = 26/41 (63%), Positives = 34/41 (82%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
ERTF+MIKPDGV+RGLVG+I+ RFE KGF++ A+K +Q
Sbjct: 2 ERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQ 42
>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural
genomics, NPPSFA, NAT project on protein structural and
functional analyses; HET: GDP; 1.70A {Pyrococcus
horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A*
2dy9_A* 2dya_A*
Length = 160
Score = 212 bits (541), Expect = 2e-71
Identities = 55/108 (50%), Positives = 74/108 (68%)
Query: 22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
ERT ++IKPD V RGL+G+I+ RFE+KG K++ MK + D +L HY ++KPFF+
Sbjct: 6 ETERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFK 65
Query: 82 SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
+LI Y++ PVV MV EG ++V R M GAT+P D PGTIRGD L
Sbjct: 66 ALIDYITKTPVVVMVLEGRYAVEVVRKMAGATDPKDAAPGTIRGDFGL 113
Score = 90.7 bits (226), Expect = 1e-23
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
ERT ++IKPD V RGL+G+I+ RFE+KG K++ MK + D
Sbjct: 6 ETERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDR 48
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A
{Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R
3pj9_A
Length = 144
Score = 210 bits (538), Expect = 5e-71
Identities = 50/106 (47%), Positives = 68/106 (64%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
ERT +IKPDG+++G++GKI+ RFEEKG K +A++ YA K +PFF+ L
Sbjct: 3 ERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKDL 62
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
+++M SGPVV MV EG N + R ++GATNPA GTIR D
Sbjct: 63 VQFMISGPVVLMVLEGENAVLANRDIMGATNPAQAAEGTIRKDFAT 108
Score = 89.5 bits (223), Expect = 2e-23
Identities = 20/40 (50%), Positives = 30/40 (75%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
ERT +IKPDG+++G++GKI+ RFEEKG K +A++
Sbjct: 3 ERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLS 42
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer,
signaling protein,transferase; 1.62A {Escherichia coli}
Length = 142
Score = 210 bits (537), Expect = 6e-71
Identities = 46/106 (43%), Positives = 67/106 (63%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
ERTF +IKP+ V + ++G I RFE GFK++ K + + R YA KPFF+ L
Sbjct: 3 ERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGL 62
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
+++M+SGP+V V EG N ++ R +LGATNPA+ + GT+R D
Sbjct: 63 VEFMTSGPIVVSVLEGENAVQRHRDLLGATNPANALAGTLRADYAD 108
Score = 89.1 bits (222), Expect = 3e-23
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
ERTF +IKP+ V + ++G I RFE GFK++ K +
Sbjct: 3 ERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLT 42
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase
nucleotide binding, ATP-binding, magnesium,
metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga
mimivirus} PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A*
3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A*
2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A*
3gpa_A* ...
Length = 146
Score = 209 bits (535), Expect = 2e-70
Identities = 44/109 (40%), Positives = 66/109 (60%), Gaps = 1/109 (0%)
Query: 22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKF-VQADDKLLRTHYAALKDKPFF 80
+RT ++IKPD +R LV +I+ R E+K FK+++MKF +A L+ HY ++ +F
Sbjct: 5 GLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYF 64
Query: 81 ESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
+M SGP++ +V+EG + I R + G TNP PGTIRGDL
Sbjct: 65 NDNCDFMVSGPIISIVYEGTDAISKIRRLQGNTNPLASAPGTIRGDLAN 113
Score = 86.8 bits (216), Expect = 2e-22
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFV 184
+RT ++IKPD +R LV +I+ R E+K FK+++MKF
Sbjct: 5 GLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFW 43
>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate,
transferase; 2.60A {Mycobacterium tuberculosis} SCOP:
d.58.6.1
Length = 136
Score = 208 bits (532), Expect = 3e-70
Identities = 47/107 (43%), Positives = 67/107 (62%), Gaps = 1/107 (0%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
ERT ++IKPDG++R L+G+I+ R E KG + A++ +L HYA + KPFF SL
Sbjct: 3 ERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSL 62
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADC-IPGTIRGDLCL 129
+++++SGPVV + EG I R + G T+P PGTIRGD L
Sbjct: 63 LEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQAAAPGTIRGDFAL 109
Score = 89.9 bits (224), Expect = 1e-23
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
ERT ++IKPDG++R L+G+I+ R E KG + A++
Sbjct: 3 ERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSA 43
>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition
state mimic, transition state analog, transferas; HET:
ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A*
Length = 190
Score = 208 bits (530), Expect = 3e-69
Identities = 48/118 (40%), Positives = 69/118 (58%), Gaps = 5/118 (4%)
Query: 17 ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYA---- 72
+ S ++T ++KPDGV+RGL+G +V RFE G K++A K + D+ L + HY
Sbjct: 20 GSMSMLLQKTLCIVKPDGVRRGLIGDVVSRFERVGLKMVAAKMLIVDESLAKKHYLYDDI 79
Query: 73 -ALKDKPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
+ + SLIK++S+ PV V EG+ I+V R + GAT P IPGTIRGD
Sbjct: 80 VFRHSEAVWNSLIKFISNSPVFTFVVEGVESIEVVRKLCGATEPKLAIPGTIRGDFSY 137
Score = 91.7 bits (228), Expect = 1e-23
Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 141 ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
+ S ++T ++KPDGV+RGL+G +V RFE G K++A K + D+
Sbjct: 20 GSMSMLLQKTLCIVKPDGVRRGLIGDVVSRFERVGLKMVAAKMLIVDE 67
>4ek2_A Nucleoside diphosphate kinase; seattle structural genomics center
for infectious disease, S DAMP, niaid; HET: DA; 2.00A
{Burkholderia thailandensis} PDB: 4dut_A*
Length = 145
Score = 206 bits (526), Expect = 3e-69
Identities = 41/106 (38%), Positives = 60/106 (56%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
ERT +IKPD V + ++G+I RFE G K++A + YA ++PFF+ L
Sbjct: 8 ERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLSRADAEKFYAVHAERPFFKDL 67
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
+++M SGPV+ V EG + I R ++GAT+P GTIR D
Sbjct: 68 VEFMISGPVMIQVLEGEDAILKNRDLMGATDPKKAEKGTIRADFAD 113
Score = 88.0 bits (219), Expect = 9e-23
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
ERT +IKPD V + ++G+I RFE G K++A +
Sbjct: 8 ERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLS 47
>3ztp_A Nucleoside diphosphate kinase; transferase; HET: GOL; 1.37A
{Aquifex aeolicus} PDB: 3zto_A* 3ztq_A 3ztr_A 3zts_A
Length = 142
Score = 202 bits (516), Expect = 8e-68
Identities = 40/109 (36%), Positives = 67/109 (61%), Gaps = 3/109 (2%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
ERT I++KPD +++G +GKI+ RF ++GF++ A+K + + Y +++PFF+ L
Sbjct: 4 ERTLIIVKPDAMEKGALGKILDRFIQEGFQIKALKMFRFTPEKAGEFYYVHRERPFFQEL 63
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPAD---CIPGTIRGDLCL 129
+++MSSGPVV V EG + IK R ++G T+ + P +IR
Sbjct: 64 VEFMSSGPVVAAVLEGEDAIKRVREIIGPTDSEEARKVAPNSIRAQFGT 112
Score = 87.6 bits (218), Expect = 1e-22
Identities = 17/40 (42%), Positives = 30/40 (75%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
ERT I++KPD +++G +GKI+ RF ++GF++ A+K +
Sbjct: 4 ERTLIIVKPDAMEKGALGKILDRFIQEGFQIKALKMFRFT 43
>1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin
fold, transferase; HET: PGE; 2.50A {Pyrobaculum
aerophilum} SCOP: d.58.6.1
Length = 195
Score = 186 bits (473), Expect = 1e-60
Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 33/141 (23%)
Query: 22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKD----- 76
E+T +++KPD V RGLV +I+ RF++ G K++A+K V+A + + Y + ++
Sbjct: 14 PVEKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQSA 73
Query: 77 ----------------------------KPFFESLIKYMSSGPVVPMVWEGLNVIKVGRS 108
+ +L+KYM+SGP V MV +G +++ R
Sbjct: 74 GQKLLKAYQELGIDPRAKIGTDDPVEVGRIIKRNLVKYMTSGPNVVMVLKGNRAVEIVRK 133
Query: 109 MLGATNPADCIPGTIRGDLCL 129
++G T+P PGTIRGD +
Sbjct: 134 LVGPTSPHSAPPGTIRGDYSI 154
Score = 89.2 bits (221), Expect = 9e-23
Identities = 19/43 (44%), Positives = 31/43 (72%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
E+T +++KPD V RGLV +I+ RF++ G K++A+K V+A
Sbjct: 14 PVEKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKASP 56
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.001
Identities = 23/126 (18%), Positives = 41/126 (32%), Gaps = 20/126 (15%)
Query: 2 DSKLLVCFLLQCALYATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGF------KLI 55
++K F L C + T + K+ T D + I L+
Sbjct: 255 NAKAWNAFNLSCKILLT-TRFKQVT------DFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 56 AMKFVQADDKLLRTHYAALKDKPFFESLI-KYMSSGPVVPMVWEGLNVIKVGRSM---LG 111
K++ + L L P S+I + + G W+ +N K+ + L
Sbjct: 308 L-KYLDCRPQDLPR--EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 112 ATNPAD 117
PA+
Sbjct: 365 VLEPAE 370
Score = 34.4 bits (78), Expect = 0.019
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 12/75 (16%)
Query: 22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
+E I++ D V L ++ K + + KFV +++LR +Y F
Sbjct: 48 KEEIDHIIMSKDAVSGTL--RLFWTLLSKQ-EEMVQKFV---EEVLRINY------KFLM 95
Query: 82 SLIKYMSSGPVVPMV 96
S IK P +
Sbjct: 96 SPIKTEQRQPSMMTR 110
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.069
Identities = 32/188 (17%), Positives = 47/188 (25%), Gaps = 87/188 (46%)
Query: 48 EEKGF----------KLIAMKFVQADDKLLRTHYAAL----------KDKPFF----ESL 83
+ GF + + F K +R +Y+A+ K + F E
Sbjct: 1655 DTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHS 1714
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATN---PADCIPGTIRGDLCLLVCCLLQ---- 136
Y +GL L AT PA L L+ +
Sbjct: 1715 TSYTFRSE------KGL---------LSATQFTQPA----------LTLMEKAAFEDLKS 1749
Query: 137 ------------------CALYATASPNKERTFIMIKPDGV----QRG-LVGKIVQRFEE 173
AL + A +M V RG + V R +E
Sbjct: 1750 KGLIPADATFAGHSLGEYAALASLAD-------VMSIESLVEVVFYRGMTMQVAVPR-DE 1801
Query: 174 KGFKLIAM 181
G M
Sbjct: 1802 LGRSNYGM 1809
Score = 32.3 bits (73), Expect = 0.11
Identities = 35/203 (17%), Positives = 59/203 (29%), Gaps = 75/203 (36%)
Query: 14 ALYATASPNKERTF-IMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYA 72
AL+ + I G Q G FEE LR Y
Sbjct: 144 ALFRAVGEGNAQLVAIF----GGQ----GNTDDYFEE-----------------LRDLYQ 178
Query: 73 ALKDKPFFESLIKYMSS--GPVVPMVWE-------GLNVIKVGRSMLGATNPADCIPGTI 123
LIK+ + ++ + GLN+++ L NP++ P
Sbjct: 179 T--YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW----L--ENPSN-TPDKD 229
Query: 124 RGDLCLLVC---CLLQCALYATA------SPNKERTFIMIKPDGVQRGLVGK---IV--- 168
+ C ++Q A Y +P + R+++ +G G +V
Sbjct: 230 YLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL--------KGATGHSQGLVTAV 281
Query: 169 --------QRFEEKGFKLIAMKF 183
+ F K I + F
Sbjct: 282 AIAETDSWESFFVSVRKAITVLF 304
Score = 31.6 bits (71), Expect = 0.18
Identities = 39/184 (21%), Positives = 58/184 (31%), Gaps = 50/184 (27%)
Query: 23 KERTFIMI---KPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYA--ALKDK 77
+E MI DG + KI F+E + F L T + AL
Sbjct: 1685 RENYSAMIFETIVDGKLKTE--KI---FKEINEHSTSYTFRSEKGLLSATQFTQPAL--- 1736
Query: 78 PF------FESLIKYMSSGPVVPMVWEGLNVIKVGRSMLG------ATNPADCIPGTIRG 125
FE L S G ++P + G S LG + AD + I
Sbjct: 1737 -TLMEKAAFEDL---KSKG-LIP-----ADATFAGHS-LGEYAALASL--ADVMS--IE- 1780
Query: 126 DLCLLVCC---LLQCALYATASPNKERTFIMIKPDGVQRGL----VGKIVQRF-EEKGFK 177
L +V +Q A+ I I P V + +V+R + G+
Sbjct: 1781 SLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWL 1840
Query: 178 L-IA 180
+ I
Sbjct: 1841 VEIV 1844
Score = 28.5 bits (63), Expect = 1.9
Identities = 38/208 (18%), Positives = 66/208 (31%), Gaps = 74/208 (35%)
Query: 9 FLLQCALYATA------SPNKERTFIMIKPDGVQRGLVGK---IV-----------QRFE 48
++Q A Y +P + R+++ +G G +V + F
Sbjct: 242 GVIQLAHYVVTAKLLGFTPGELRSYL--------KGATGHSQGLVTAVAIAETDSWESFF 293
Query: 49 EKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE---SLIKY---MSSGPVVPM--VWEGL 100
K I + F +R + A P S+++ + G PM + L
Sbjct: 294 VSVRKAITVLFFIG----VRCYEAY----PNTSLPPSILEDSLENNEGVPSPMLSI-SNL 344
Query: 101 NVIKVGRSMLGATN---PADC--------------IPGTIRGDLCLLVCCLLQCALYATA 143
+V + + TN PA + G + L L L + A A
Sbjct: 345 TQEQV-QDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQ-SLYGLNLTLRK----AKA 398
Query: 144 SPNKERTFIMIKPDGVQRGLVGKIVQRF 171
+++ I P +R L K RF
Sbjct: 399 PSGLDQSRI---PFS-ERKL--KFSNRF 420
>3rh3_A Uncharacterized DUF3829-like protein; all alpha protein, structural
genomics, joint center for STR genomics, JCSG; HET: MSE;
2.10A {Bacteroides thetaiotaomicron}
Length = 264
Score = 29.9 bits (66), Expect = 0.44
Identities = 10/57 (17%), Positives = 18/57 (31%)
Query: 71 YAALKDKPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDL 127
+ + +++ YM VP V R +P D +R +L
Sbjct: 29 LRHVANAKDINAVLGYMEQTGKVPEVDPIAPPEIAARDTAELLDPGDYFNPEVRQNL 85
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 814
Score = 28.1 bits (63), Expect = 2.1
Identities = 6/36 (16%), Positives = 14/36 (38%)
Query: 29 MIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 64
+ P+ + + KI + E + + A+ D
Sbjct: 621 NVLPNVEGKDSLTKIARFLEGQEYYEEALNISPDQD 656
Score = 28.1 bits (63), Expect = 2.1
Identities = 6/36 (16%), Positives = 14/36 (38%)
Query: 153 MIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
+ P+ + + KI + E + + A+ D
Sbjct: 621 NVLPNVEGKDSLTKIARFLEGQEYYEEALNISPDQD 656
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer,
structural P; 3.02A {Chlamydomonas reinhardtii}
Length = 228
Score = 27.0 bits (59), Expect = 3.6
Identities = 13/76 (17%), Positives = 29/76 (38%), Gaps = 8/76 (10%)
Query: 6 LVCFLLQCALYATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDK 65
++ L +C + R ++ G + KIV+ +EK I + F +D
Sbjct: 108 IISLLEKCI--LAQPGDSPRFQAVLTIRGGESVF--KIVEINDEKQLPHITLAFRPGNDS 163
Query: 66 LLRTH----YAALKDK 77
+++ + +K
Sbjct: 164 VVKQFLAFRLSEVKGT 179
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 26.5 bits (59), Expect = 4.8
Identities = 13/75 (17%), Positives = 32/75 (42%), Gaps = 9/75 (12%)
Query: 22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAM---------KFVQADDKLLRTHYA 72
NK R ++ K D + + + FE +G + +++ + V A ++L+ +
Sbjct: 50 NKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFD 109
Query: 73 ALKDKPFFESLIKYM 87
++ K I+ +
Sbjct: 110 RMRAKGVKPRAIRAL 124
>1jb0_J Photosystem 1 reaction centre subunit IX; membrane protein,
multiprotein-pigment complex, photosynthes; HET: CL1 PQN
BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP:
f.23.18.1 PDB: 3pcq_J*
Length = 41
Score = 24.5 bits (53), Expect = 5.0
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 81 ESLIKYMSSGPVVPMVWEGL 100
+ + Y+S+ PV+ +W +
Sbjct: 2 KHFLTYLSTAPVLAAIWMTI 21
>2y3v_A SAS6, spindle assembly abnormal protein 6 homolog; structural
protein, cytoskeleton, basal BODY, centriole, CAR
cartwheel HUB; 1.92A {Danio rerio}
Length = 159
Score = 25.8 bits (56), Expect = 6.7
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 42 KIVQRFEEKGFKLIAMKFVQADDKLLRTHYAA 73
IV+ K +++K + D ++ + A+
Sbjct: 127 NIVETNAFKHLTHLSLKLLPGSDTDIKKYLAS 158
>3cnl_A YLQF, putative uncharacterized protein; circular permutation,
GNP, signaling protein; HET: GNP; 2.00A {Thermotoga
maritima} PDB: 3cnn_A* 3cno_A*
Length = 262
Score = 26.1 bits (58), Expect = 7.4
Identities = 11/48 (22%), Positives = 21/48 (43%)
Query: 21 PNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLR 68
KE ++ K D K V+ F+++G ++I + LL+
Sbjct: 45 SRKETIILLNKVDIADEKTTKKWVEFFKKQGKRVITTHKGEPRKVLLK 92
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine
sulfhydrase, structural genomic structural
genomics/proteomics initiative; HET: PLP; 2.60A {Thermus
thermophilus} SCOP: c.67.1.3
Length = 421
Score = 26.0 bits (58), Expect = 9.4
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 58 KFVQADDKLLRTHYAALKDKPFFESLIKYMSSGP 91
++ ++ +Y L P + KY P
Sbjct: 303 HWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKP 336
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.142 0.427
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,767,694
Number of extensions: 155578
Number of successful extensions: 492
Number of sequences better than 10.0: 1
Number of HSP's gapped: 487
Number of HSP's successfully gapped: 78
Length of query: 188
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 100
Effective length of database: 4,244,745
Effective search space: 424474500
Effective search space used: 424474500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.5 bits)