RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6076
(188 letters)
>d1xqia1 d.58.6.1 (A:14-195) Nucleoside diphosphate kinase, NDK
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 182
Score = 138 bits (348), Expect = 2e-42
Identities = 42/139 (30%), Positives = 71/139 (51%), Gaps = 33/139 (23%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKD------- 76
E+T +++KPD V RGLV +I+ RF++ G K++A+K V+A + + Y + ++
Sbjct: 3 EKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQSAGQ 62
Query: 77 --------------------------KPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSML 110
+ +L+KYM+SGP V MV +G +++ R ++
Sbjct: 63 KLLKAYQELGIDPRAKIGTDDPVEVGRIIKRNLVKYMTSGPNVVMVLKGNRAVEIVRKLV 122
Query: 111 GATNPADCIPGTIRGDLCL 129
G T+P PGTIRGD +
Sbjct: 123 GPTSPHSAPPGTIRGDYSI 141
Score = 76.7 bits (188), Expect = 2e-18
Identities = 19/41 (46%), Positives = 31/41 (75%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
E+T +++KPD V RGLV +I+ RF++ G K++A+K V+A
Sbjct: 3 EKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKASP 43
>d3bbba1 d.58.6.1 (A:2-151) Nucleoside diphosphate kinase, NDK
{Human (Homo sapiens) [TaxId: 9606]}
Length = 150
Score = 134 bits (339), Expect = 2e-41
Identities = 76/108 (70%), Positives = 92/108 (85%)
Query: 22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+AMKF++A ++ L+ HY LKD+PFF
Sbjct: 2 NLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFP 61
Query: 82 SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
L+KYM+SGPVV MVWEGLNV+K GR MLG TNPAD PGTIRGD C+
Sbjct: 62 GLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCI 109
Score = 79.6 bits (196), Expect = 7e-20
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+AMKF++A +
Sbjct: 2 NLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASE 44
>d1zs6a1 d.58.6.1 (A:18-169) Nucleoside diphosphate kinase, NDK
{Human(Homo sapiens), NDK3 [TaxId: 9606]}
Length = 152
Score = 133 bits (335), Expect = 1e-40
Identities = 70/124 (56%), Positives = 97/124 (78%), Gaps = 3/124 (2%)
Query: 22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
ERTF+ +KPDGVQR LVG+IV+RFE KGFKL+A+K VQA ++LLR HYA L+++PF+
Sbjct: 3 AHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYG 62
Query: 82 SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA 141
L+KYM+SGPVV MVW+GL+V++ R+++GATNPAD PGTIRGD C+ + + ++
Sbjct: 63 RLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGTIRGDFCI---EVGKNLIHG 119
Query: 142 TASP 145
+ S
Sbjct: 120 SDSV 123
Score = 77.7 bits (191), Expect = 3e-19
Identities = 29/42 (69%), Positives = 35/42 (83%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
ERTF+ +KPDGVQR LVG+IV+RFE KGFKL+A+K VQA
Sbjct: 3 AHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQAS 44
>d1s57a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale
cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId:
3702]}
Length = 153
Score = 132 bits (332), Expect = 3e-40
Identities = 60/124 (48%), Positives = 83/124 (66%), Gaps = 3/124 (2%)
Query: 22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
+ E T+IM+KPDG+QRGLVG+I+ RFE+KGFKLI +K Q +L HY L K FF
Sbjct: 4 DVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFP 63
Query: 82 SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA 141
+LI+Y++SGPVV M WEG+ V+ R ++G T+P PGTIRGDL + + ++
Sbjct: 64 NLIEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAEPGTIRGDLAVQT---GRNIVHG 120
Query: 142 TASP 145
+ SP
Sbjct: 121 SDSP 124
Score = 78.9 bits (194), Expect = 1e-19
Identities = 26/42 (61%), Positives = 34/42 (80%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
+ E T+IM+KPDG+QRGLVG+I+ RFE+KGFKLI +K Q
Sbjct: 4 DVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCP 45
>d1hlwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Dictyostelium discoideum [TaxId: 44689]}
Length = 150
Score = 128 bits (324), Expect = 4e-39
Identities = 57/124 (45%), Positives = 81/124 (65%), Gaps = 3/124 (2%)
Query: 22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K + L +HYA K++PFF
Sbjct: 2 NKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFG 61
Query: 82 SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA 141
L+ +++SGPVV MV+EG V+ R M+G TNP PG+IRGD + V + +
Sbjct: 62 GLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDV---GRNIIAG 118
Query: 142 TASP 145
+ S
Sbjct: 119 SDSV 122
Score = 80.8 bits (199), Expect = 2e-20
Identities = 24/42 (57%), Positives = 33/42 (78%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K +
Sbjct: 2 NKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPT 43
>d2az3a1 d.58.6.1 (A:4-155) Nucleoside diphosphate kinase, NDK
{Archaeon Halobacterium salinarum [TaxId: 2242]}
Length = 152
Score = 127 bits (319), Expect = 2e-38
Identities = 56/125 (44%), Positives = 82/125 (65%), Gaps = 3/125 (2%)
Query: 22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
+ ERTF+M+KPDGVQRGL+G IV R E KG K++ KF++ D++L HYA +DKPFF+
Sbjct: 1 HDERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFD 60
Query: 82 SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA 141
L+ +++SGPV MVWEG + + R ++GAT+ D PGTIRGD + ++
Sbjct: 61 GLVSFITSGPVFAMVWEGADATRQVRQLMGATDAQDAAPGTIRGDYGNDL---GHNLIHG 117
Query: 142 TASPN 146
+ +
Sbjct: 118 SDHED 122
Score = 76.6 bits (188), Expect = 9e-19
Identities = 25/43 (58%), Positives = 34/43 (79%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
+ ERTF+M+KPDGVQRGL+G IV R E KG K++ KF++ D+
Sbjct: 1 HDERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDE 43
>d1wkja1 d.58.6.1 (A:1-137) Nucleoside diphosphate kinase, NDK
{Thermus thermophilus [TaxId: 274]}
Length = 137
Score = 125 bits (314), Expect = 1e-37
Identities = 60/122 (49%), Positives = 86/122 (70%), Gaps = 3/122 (2%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
ERTF+MIKPDGV+RGLVG+I+ RFE KGF++ A+K +Q +L HYA ++KPFF L
Sbjct: 2 ERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPGL 61
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYATA 143
+++++SGPVV MV EG V+ R M+GAT+P D +PGTIRGD + + ++ +A
Sbjct: 62 VRFITSGPVVAMVLEGPGVVAEVRKMMGATHPKDALPGTIRGDFATTI---DENVIHGSA 118
Query: 144 SP 145
+
Sbjct: 119 TL 120
Score = 72.3 bits (177), Expect = 3e-17
Identities = 26/40 (65%), Positives = 34/40 (85%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
ERTF+MIKPDGV+RGLVG+I+ RFE KGF++ A+K +Q
Sbjct: 2 ERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQIS 41
>d1nhkl_ d.58.6.1 (L:) Nucleoside diphosphate kinase, NDK
{Myxococcus xanthus [TaxId: 34]}
Length = 143
Score = 125 bits (314), Expect = 1e-37
Identities = 51/122 (41%), Positives = 74/122 (60%), Gaps = 3/122 (2%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
ERT +IKPDG+++G++GKI+ RFEEKG K +A++ YA K +PFF+ L
Sbjct: 3 ERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKDL 62
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYATA 143
+++M SGPVV MV EG N + R ++GATNPA GTIR D + + ++ +
Sbjct: 63 VQFMISGPVVLMVLEGENAVLANRDIMGATNPAQAAEGTIRKDFATSI---DKNTVHGSD 119
Query: 144 SP 145
S
Sbjct: 120 SL 121
Score = 72.3 bits (177), Expect = 4e-17
Identities = 20/40 (50%), Positives = 30/40 (75%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
ERT +IKPDG+++G++GKI+ RFEEKG K +A++
Sbjct: 3 ERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLS 42
>d1w7wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Pea
(Pisum sativum) [TaxId: 3888]}
Length = 151
Score = 124 bits (313), Expect = 2e-37
Identities = 60/124 (48%), Positives = 82/124 (66%), Gaps = 3/124 (2%)
Query: 22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
ERTFI IKPDGVQRGL+ +I+ RFE KGFKL+ +K + + + HY LK++PFF
Sbjct: 2 ELERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFFN 61
Query: 82 SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA 141
L ++SSGPV+ MVWEG VI GR ++GAT+P PGTIRGDL + + + ++
Sbjct: 62 GLCDFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSAPGTIRGDLAV---VVGRNIIHG 118
Query: 142 TASP 145
+ P
Sbjct: 119 SDGP 122
Score = 77.4 bits (190), Expect = 5e-19
Identities = 25/42 (59%), Positives = 31/42 (73%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
ERTFI IKPDGVQRGL+ +I+ RFE KGFKL+ +K +
Sbjct: 2 ELERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPT 43
>d1u8wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 149
Score = 124 bits (312), Expect = 3e-37
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 3/122 (2%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
E+TFIMIKPDGVQRGL+G+++ RFE+KGF L +K + + HY L K FF L
Sbjct: 2 EQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGL 61
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYATA 143
+ Y+ SGPVV M+WEG NV+ GR ++GATNPA PGTIRGD + + + ++ +
Sbjct: 62 VDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAASEPGTIRGDFAI---DIGRNVIHGSD 118
Query: 144 SP 145
S
Sbjct: 119 SV 120
Score = 72.4 bits (177), Expect = 3e-17
Identities = 24/41 (58%), Positives = 33/41 (80%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
E+TFIMIKPDGVQRGL+G+++ RFE+KGF L +K + +
Sbjct: 2 EQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVER 42
>d1ehwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Human
(Homo sapiens), NDK4 [TaxId: 9606]}
Length = 143
Score = 123 bits (309), Expect = 5e-37
Identities = 62/124 (50%), Positives = 88/124 (70%), Gaps = 3/124 (2%)
Query: 22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
+ERT + +KPDGVQR LVG ++QRFE +GF L+ MK +QA + +L HY L+ KPF+
Sbjct: 4 TRERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYP 63
Query: 82 SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA 141
+LI+YMSSGPVV MVWEG NV++ R+M+G T+ A+ PGTIRGD + + + ++A
Sbjct: 64 ALIRYMSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAAPGTIRGDFSVHI---SRNVIHA 120
Query: 142 TASP 145
+ S
Sbjct: 121 SDSV 124
Score = 72.8 bits (178), Expect = 2e-17
Identities = 24/42 (57%), Positives = 32/42 (76%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
+ERT + +KPDGVQR LVG ++QRFE +GF L+ MK +QA
Sbjct: 4 TRERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAP 45
>d2dyaa1 d.58.6.1 (A:6-158) Nucleoside diphosphate kinase, NDK
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 153
Score = 123 bits (310), Expect = 6e-37
Identities = 58/124 (46%), Positives = 81/124 (65%)
Query: 22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
ERT ++IKPD V RGL+G+I+ RFE+KG K++ MK + D +L HY ++KPFF+
Sbjct: 1 ETERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFK 60
Query: 82 SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA 141
+LI Y++ PVV MV EG ++V R M GAT+P D PGTIRGD L V + ++A
Sbjct: 61 ALIDYITKTPVVVMVLEGRYAVEVVRKMAGATDPKDAAPGTIRGDFGLEVSDAICNVIHA 120
Query: 142 TASP 145
+ S
Sbjct: 121 SDSK 124
Score = 78.9 bits (194), Expect = 1e-19
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
ERT ++IKPD V RGL+G+I+ RFE+KG K++ MK + D
Sbjct: 1 ETERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDR 43
>d1xiqa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}
Length = 149
Score = 122 bits (307), Expect = 2e-36
Identities = 63/108 (58%), Positives = 86/108 (79%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
E++FIMIKPDGVQRGLVG I++RFE+KG+KLIA+K + +++L+ HY L D+PFF++L
Sbjct: 2 EKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFFKNL 61
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLV 131
+ Y+S GPVV MVWEG++++K GR ++G TNP GTIRGD CL V
Sbjct: 62 VAYISKGPVVAMVWEGVDMVKQGRKLIGETNPLTSNTGTIRGDFCLEV 109
Score = 76.2 bits (187), Expect = 1e-18
Identities = 27/40 (67%), Positives = 35/40 (87%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
E++FIMIKPDGVQRGLVG I++RFE+KG+KLIA+K +
Sbjct: 2 EKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPT 41
>d1k44a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 135
Score = 121 bits (305), Expect = 2e-36
Identities = 47/107 (43%), Positives = 67/107 (62%), Gaps = 1/107 (0%)
Query: 24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
ERT ++IKPDG++R L+G+I+ R E KG + A++ +L HYA + KPFF SL
Sbjct: 2 ERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSL 61
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADC-IPGTIRGDLCL 129
+++++SGPVV + EG I R + G T+P PGTIRGD L
Sbjct: 62 LEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQAAAPGTIRGDFAL 108
Score = 73.9 bits (181), Expect = 8e-18
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
ERT ++IKPDG++R L+G+I+ R E KG + A++
Sbjct: 2 ERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSA 42
>d1nb2a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Bacillus
halodenitrificans [TaxId: 1482]}
Length = 149
Score = 119 bits (298), Expect = 4e-35
Identities = 61/123 (49%), Positives = 76/123 (61%), Gaps = 3/123 (2%)
Query: 23 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFES 82
KERTF+M+KPDGVQR LVG++V+RFE KG KL K + HYA L PFF
Sbjct: 1 KERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGG 60
Query: 83 LIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYAT 142
L+ +SGPV MVWEGLN R +LGATNP+D PGTIRGD + + A++ +
Sbjct: 61 LVGGATSGPVFAMVWEGLNAAATARQILGATNPSDAAPGTIRGDFGVSA---GRNAIHGS 117
Query: 143 ASP 145
S
Sbjct: 118 DSA 120
Score = 76.3 bits (187), Expect = 1e-18
Identities = 25/41 (60%), Positives = 31/41 (75%)
Query: 147 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
KERTF+M+KPDGVQR LVG++V+RFE KG KL K +
Sbjct: 1 KERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVIS 41
>d2b8qa1 d.58.6.1 (A:2-129) Nucleoside diphosphate kinase, NDK
{Mimivirus [TaxId: 315393]}
Length = 128
Score = 104 bits (261), Expect = 6e-30
Identities = 40/106 (37%), Positives = 62/106 (58%), Gaps = 5/106 (4%)
Query: 25 RTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMK-FVQADDKLLRTHYAALKDKPFFESL 83
RT ++IKPD +R LV +I+ R E+K FK+++MK + +A L+ HY ++ +F
Sbjct: 2 RTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFNDN 61
Query: 84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
+M SGP++ +V+EG + I R + G PGTIRGDL
Sbjct: 62 CDFMVSGPIISIVYEGTDAISKIRRLQGNILT----PGTIRGDLAN 103
Score = 68.2 bits (166), Expect = 9e-16
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 149 RTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQ 185
RT ++IKPD +R LV +I+ R E+K FK+++MKF
Sbjct: 2 RTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWS 38
>d1r9ja3 c.48.1.1 (A:527-669) Transketolase (TK), C-domain
{Leishmania mexicana mexicana [TaxId: 44270]}
Length = 143
Score = 25.4 bits (55), Expect = 3.8
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 79 FFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCI 119
+ + +S V WE + VG S GA+ PA +
Sbjct: 68 VLPAGVPVVSVEAYVSFGWEKYSHAHVGMSGFGASAPAGVL 108
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre,
PsaJ {Synechococcus elongatus [TaxId: 32046]}
Length = 41
Score = 23.1 bits (50), Expect = 4.5
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 83 LIKYMSSGPVVPMVWEGL 100
+ Y+S+ PV+ +W +
Sbjct: 4 FLTYLSTAPVLAAIWMTI 21
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.142 0.427
Gapped
Lambda K H
0.267 0.0580 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 668,126
Number of extensions: 29460
Number of successful extensions: 128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 35
Length of query: 188
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 108
Effective length of database: 1,309,196
Effective search space: 141393168
Effective search space used: 141393168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.4 bits)