BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6079
(79 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 37/56 (66%)
Query: 24 GVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLNS 79
G G++ G +Y +GG+DG + LN+ E++DP W+ + PM + RS AGVA+LN
Sbjct: 152 GAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLND 207
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 25 VGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVL 77
VG G LYA+ G+DG S L++ E +DP + W + M + R AGV VL
Sbjct: 247 VGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMGTQRCDAGVCVL 299
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 24 GVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVL 77
G GV +Y VGG DG ++L++ E ++ R W+ + M +PR G VL
Sbjct: 199 GAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL 252
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 34 LYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAV 76
+Y GG DG + ER+DP + QWS + M + R AG+ V
Sbjct: 115 IYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV 157
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 34 LYAVGGHDGWSYLNTTERFDPRLRQ---WSFIAPMLSPRSTAGVAVL 77
+Y +GG+DG S L++ E D + W +APM R AG L
Sbjct: 65 IYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL 111
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 7/24 (29%), Positives = 16/24 (66%)
Query: 46 LNTTERFDPRLRQWSFIAPMLSPR 69
++ E++DP+ ++WSF+ + R
Sbjct: 30 IDVVEKYDPKTQEWSFLPSITRKR 53
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 23 LGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLN 78
+GVGV++ G +YAVGG G + N+ ER++P +W +APML+ R GVAVLN
Sbjct: 116 IGVGVID--GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLN 169
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%)
Query: 24 GVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAV 76
G GV +YA GG+DG LN+ ER+D W+F+APM RS G+ V
Sbjct: 209 GAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV 261
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 34/57 (59%)
Query: 23 LGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLNS 79
+GVGV LYAVGG DG + LN+ E + P +W I M + RS AGV VL++
Sbjct: 161 IGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHN 217
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 33/52 (63%)
Query: 25 VGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAV 76
+G+ +G +Y +GG+DG ++L++ E +DP WS + M S RS GVAV
Sbjct: 257 LGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVAV 308
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 32 GPLYAVGGH----DGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLN 78
G LYAVGG DG + + + ++P QWS APM PR+ GV V++
Sbjct: 72 GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVID 122
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 23 LGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLN 78
+GVGV++ G +YAVGG G + N+ ER++P +W +APML+ R GVAVLN
Sbjct: 115 IGVGVID--GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLN 168
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%)
Query: 24 GVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAV 76
G GV +YA GG+DG LN+ ER+D W+F+APM RS G+ V
Sbjct: 208 GAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV 260
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 34/57 (59%)
Query: 23 LGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLNS 79
+GVGV LYAVGG DG + LN+ E + P +W I M + RS AGV VL++
Sbjct: 160 IGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHN 216
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 33/52 (63%)
Query: 25 VGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAV 76
+G+ +G +Y +GG+DG ++L++ E +DP WS + M S RS GVAV
Sbjct: 256 LGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVAV 307
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 32 GPLYAVGGH----DGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLN 78
G LYAVGG DG + + + ++P QWS APM PR+ GV V++
Sbjct: 71 GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVID 121
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 23 LGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLN 78
+GVGV++ G +YAVGG G + ++ ER++P +W +APML+ R GVAVLN
Sbjct: 109 IGVGVID--GHIYAVGGSHGCIHHSSVERYEPERDEWHLVAPMLTRRIGVGVAVLN 162
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%)
Query: 24 GVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAV 76
G GV +YA GG+DG LN+ ER+D W+F+APM RS G+ V
Sbjct: 202 GAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMRHHRSALGITV 254
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 35/57 (61%)
Query: 23 LGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLNS 79
+GVGV LYAVGG DG + LN+ E + P +W I PM + RS AGV VL++
Sbjct: 154 IGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITPMNTIRSGAGVCVLHN 210
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 33/52 (63%)
Query: 25 VGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAV 76
+G+ +G +Y +GG+DG ++L++ E +DP WS + M S RS GVAV
Sbjct: 250 LGITVHQGKIYVLGGYDGHTFLDSVECYDPDSDTWSEVTRMTSGRSGVGVAV 301
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 32 GPLYAVGGH----DGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLN 78
G LYAVGG DG + + + ++P QWS A M PR+ GV V++
Sbjct: 65 GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVID 115
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 23 LGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLN 78
+GVGV++ G +YAVGG G + ++ ER++P +W +APML+ R GVAVLN
Sbjct: 108 IGVGVID--GHIYAVGGSHGCIHHSSVERYEPERDEWHLVAPMLTRRIGVGVAVLN 161
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%)
Query: 24 GVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAV 76
G GV +YA GG+DG LN+ ER+D W+F+APM RS G+ V
Sbjct: 201 GAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMRHHRSALGITV 253
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 35/57 (61%)
Query: 23 LGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLNS 79
+GVGV LYAVGG DG + LN+ E + P +W I PM + RS AGV VL++
Sbjct: 153 IGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITPMNTIRSGAGVCVLHN 209
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 33/52 (63%)
Query: 25 VGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAV 76
+G+ +G +Y +GG+DG ++L++ E +DP WS + M S RS GVAV
Sbjct: 249 LGITVHQGKIYVLGGYDGHTFLDSVECYDPDSDTWSEVTRMTSGRSGVGVAV 300
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 32 GPLYAVGGH----DGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLN 78
G LYAVGG DG + + + ++P QWS A M PR+ GV V++
Sbjct: 64 GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVID 114
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 23 LGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLN 78
+GVGV++ G +YAVGG G + N+ ER++P +W +AP L+ R GVAVLN
Sbjct: 115 IGVGVID--GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPXLTRRIGVGVAVLN 168
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%)
Query: 24 GVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAV 76
G GV +YA GG+DG LN+ ER+D W+F+AP RS G+ V
Sbjct: 208 GAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPXKHRRSALGITV 260
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 25 VGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAV 76
+G+ +G +Y +GG+DG ++L++ E +DP WS + S RS GVAV
Sbjct: 256 LGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRXTSGRSGVGVAV 307
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 33/57 (57%)
Query: 23 LGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLNS 79
+GVGV LYAVGG DG + LN+ E + P +W I + RS AGV VL++
Sbjct: 160 IGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRXITAXNTIRSGAGVCVLHN 216
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 32 GPLYAVGGH----DGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLN 78
G LYAVGG DG + + + ++P QWS AP PR+ GV V++
Sbjct: 71 GLLYAVGGRNNSPDGNTDSSALDCYNPXTNQWSPCAPXSVPRNRIGVGVID 121
>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
pdb|2XN4|B Chain B, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
Length = 302
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 26 GVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLN 78
G++ G ++AVGG +G + T + +DP QW+ +A M RST G AVLN
Sbjct: 56 GMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLN 108
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 24 GVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLN 78
GVGVL LYAVGGHDG + E +DP W +A M R AGV +N
Sbjct: 199 GVGVLN--NLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVN 251
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 34 LYAVGGHDGWSY--LNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLNS 79
LYAVGG+D S L+T E ++ +W++IA M + RS AGV VLN+
Sbjct: 158 LYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNN 205
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 21 MCL-GVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSP-RSTAGVAVLN 78
MC GV G LY VGG DG L + E ++P +W+ ++ +S RS AGV V++
Sbjct: 240 MCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVID 299
Query: 79 S 79
Sbjct: 300 K 300
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 23 LGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRST 71
LG VL G LYAVGG DG + L++ E ++ + +W +APM + RS+
Sbjct: 102 LGAAVLN--GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSS 148
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
Length = 306
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 26 GVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPM 65
G++ + ++AVGG +G L+ E +D +L +W ++PM
Sbjct: 195 GLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPM 234
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 26 GVLEPEGPLYAVGGHDGWSY----LNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLNS 79
G++E G +Y GG G + LN+ E +DP W+ + PM+ R G+ +
Sbjct: 144 GMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKD 201
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
Provides The Binding Site For Lasp-1 That Is Necessary
For Pseudopodia Extension
Length = 318
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 24 GVGVLEPEGPLYAVGGH-DGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAV 76
G V+ G +Y +GG D N ++P+ W +APM +PRS GVA+
Sbjct: 151 GHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI 204
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 20 YMCLGVGVLEPEGPLYAVGGH-DGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAV 76
Y+ G VL +Y +GG LN +DP+ +W +APM + RS G V
Sbjct: 137 YVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV 194
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,079,109
Number of Sequences: 62578
Number of extensions: 69442
Number of successful extensions: 167
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 124
Number of HSP's gapped (non-prelim): 42
length of query: 79
length of database: 14,973,337
effective HSP length: 48
effective length of query: 31
effective length of database: 11,969,593
effective search space: 371057383
effective search space used: 371057383
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)