Query psy6079
Match_columns 79
No_of_seqs 123 out of 1392
Neff 10.3
Searched_HMMs 29240
Date Fri Aug 16 17:05:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6079.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6079hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4asc_A Kelch repeat and BTB do 99.8 4.4E-18 1.5E-22 99.9 9.9 75 3-79 120-197 (315)
2 2xn4_A Kelch-like protein 2; s 99.8 5.6E-18 1.9E-22 98.9 9.3 75 3-79 223-300 (302)
3 4asc_A Kelch repeat and BTB do 99.8 4.2E-18 1.4E-22 100.0 8.4 75 3-79 168-244 (315)
4 2xn4_A Kelch-like protein 2; s 99.8 5.2E-18 1.8E-22 99.0 8.3 75 3-79 80-156 (302)
5 3ii7_A Kelch-like protein 7; p 99.7 2E-17 6.8E-22 96.7 9.8 74 3-79 27-102 (306)
6 3ii7_A Kelch-like protein 7; p 99.7 1.4E-17 4.7E-22 97.3 9.1 75 3-79 73-150 (306)
7 1zgk_A Kelch-like ECH-associat 99.7 2.3E-17 8E-22 96.7 9.9 75 3-79 140-216 (308)
8 1zgk_A Kelch-like ECH-associat 99.7 2.5E-17 8.6E-22 96.5 9.9 75 3-79 187-263 (308)
9 2woz_A Kelch repeat and BTB do 99.7 7.7E-18 2.6E-22 99.0 7.6 75 3-79 178-254 (318)
10 2woz_A Kelch repeat and BTB do 99.7 2.3E-17 8E-22 97.0 9.3 75 3-79 130-207 (318)
11 2vpj_A Kelch-like protein 12; 99.7 3.6E-17 1.2E-21 95.3 9.7 75 3-79 178-254 (301)
12 2vpj_A Kelch-like protein 12; 99.7 6.2E-17 2.1E-21 94.3 9.6 75 3-79 81-160 (301)
13 2uvk_A YJHT; unknown function, 99.7 7.3E-16 2.5E-20 91.6 8.5 75 3-79 34-119 (357)
14 2uvk_A YJHT; unknown function, 99.7 6.2E-16 2.1E-20 91.9 7.9 75 3-79 89-201 (357)
15 2zwa_A Leucine carboxyl methyl 99.6 4E-15 1.4E-19 95.5 8.7 75 3-77 415-498 (695)
16 2zwa_A Leucine carboxyl methyl 99.5 3.3E-14 1.1E-18 91.3 7.2 72 3-78 471-547 (695)
17 1k3i_A Galactose oxidase precu 99.5 1.5E-13 5E-18 87.5 8.1 73 4-77 436-518 (656)
18 1k3i_A Galactose oxidase precu 99.4 1.3E-13 4.3E-18 87.8 5.7 72 3-79 222-298 (656)
19 3nol_A Glutamine cyclotransfer 85.7 3.7 0.00013 24.0 6.1 50 3-59 68-119 (262)
20 3mbr_X Glutamine cyclotransfer 82.6 5.2 0.00018 23.1 6.1 50 3-59 46-97 (243)
21 3mbr_X Glutamine cyclotransfer 78.8 7.3 0.00025 22.4 7.7 49 24-77 25-73 (243)
22 3dsm_A Uncharacterized protein 77.4 8.4 0.00029 22.4 6.1 55 3-64 20-82 (328)
23 3nok_A Glutaminyl cyclase; bet 77.2 5.7 0.00019 23.3 4.5 48 4-59 79-128 (268)
24 3nol_A Glutamine cyclotransfer 74.5 11 0.00036 22.1 6.1 49 24-77 47-95 (262)
25 3nok_A Glutaminyl cyclase; bet 65.1 19 0.00063 21.2 5.4 49 4-60 120-168 (268)
26 2lyd_A Decapping protein 1; DC 63.3 6.4 0.00022 20.6 2.4 17 46-62 37-53 (134)
27 3zx7_A Lysenin; toxin, pore fo 57.1 13 0.00044 21.2 3.1 50 10-62 242-293 (309)
28 4fmw_A RNA (guanine-9-)-methyl 56.6 7.4 0.00025 21.7 2.0 13 31-43 119-131 (197)
29 3kvp_A Uncharacterized protein 51.9 16 0.00055 17.0 2.4 16 47-62 40-55 (72)
30 2qkl_A DCP1 protein, SPBC3B9.2 47.6 3.4 0.00012 21.5 -0.2 16 47-62 33-48 (127)
31 1q67_A Decapping protein invol 47.2 16 0.00055 20.9 2.4 18 46-63 43-60 (231)
32 3nfg_A DNA-directed RNA polyme 46.1 18 0.0006 18.1 2.2 15 49-63 76-90 (102)
33 3syx_A Sprouty-related, EVH1 d 44.8 21 0.0007 18.7 2.5 17 47-63 18-34 (130)
34 1evh_A WH1 domain, protein (ME 44.4 23 0.00078 17.8 2.6 17 47-63 11-27 (112)
35 1qc6_A EVH1 domain from ENA/VA 43.9 21 0.00073 18.4 2.5 17 47-63 11-27 (130)
36 3nff_A RNA polymerase I subuni 41.8 22 0.00075 18.4 2.2 15 49-63 76-90 (122)
37 3g4e_A Regucalcin; six bladed 39.6 51 0.0018 18.6 7.4 53 3-64 38-90 (297)
38 3c0d_A Putative nitrite reduct 39.6 36 0.0012 16.9 3.7 34 4-39 77-110 (119)
39 1ddw_A GLGF-domain protein hom 38.7 31 0.001 17.6 2.5 17 47-63 11-28 (120)
40 3lkm_A MHCK-A, myosin heavy ch 36.3 22 0.00075 21.4 2.0 32 31-62 10-41 (307)
41 3dqy_A Toluene 1,2-dioxygenase 35.5 40 0.0014 16.2 4.4 33 3-37 66-99 (106)
42 2jo6_A Nitrite reductase [NAD( 35.4 42 0.0014 16.4 3.3 6 31-36 104-109 (113)
43 4aay_B AROB; oxidoreductase, r 33.4 61 0.0021 17.6 3.4 34 3-38 126-162 (175)
44 3u4y_A Uncharacterized protein 33.3 66 0.0023 18.0 6.0 50 4-59 24-74 (331)
45 3mqz_A Uncharacterized conserv 33.0 60 0.0021 18.5 3.3 35 4-40 75-114 (215)
46 2a8e_A Hypothetical protein YK 32.7 64 0.0022 18.5 3.4 35 4-40 64-103 (220)
47 1pex_A Collagenase-3, MMP-13; 31.7 69 0.0024 17.8 4.3 24 31-61 174-197 (207)
48 2jza_A Nitrite reductase [NAD( 31.6 53 0.0018 16.6 2.8 33 4-38 76-108 (130)
49 1itv_A MMP9; adaptive molecula 31.4 68 0.0023 17.6 4.4 23 29-58 107-129 (195)
50 3hfq_A Uncharacterized protein 31.2 34 0.0011 19.5 2.2 56 5-63 23-79 (347)
51 3gce_A Ferredoxin component of 30.5 55 0.0019 16.3 4.2 35 3-39 77-112 (121)
52 2iwa_A Glutamine cyclotransfer 29.6 86 0.0029 18.1 7.4 36 23-62 24-59 (266)
53 3c7x_A Matrix metalloproteinas 29.3 75 0.0026 17.4 4.5 21 31-58 109-129 (196)
54 1xod_A Spred1; sprouty, EVH1, 29.3 50 0.0017 16.7 2.4 17 47-63 11-27 (118)
55 3pbp_B Nucleoporin NUP116/NSP1 28.3 48 0.0016 17.7 2.3 16 47-62 125-140 (148)
56 3nf5_A Nucleoporin NUP116; nuc 28.0 48 0.0017 18.0 2.3 16 47-62 136-151 (164)
57 3lp9_A LS-24; SEED albumin, pl 27.4 88 0.003 17.6 4.1 21 31-58 129-149 (227)
58 2w7q_A Outer-membrane lipoprot 26.8 81 0.0028 17.0 4.2 16 47-62 84-99 (204)
59 1gen_A Gelatinase A; hydrolase 26.7 90 0.0031 17.4 4.5 22 30-58 134-155 (218)
60 3scy_A Hypothetical bacterial 25.7 1E+02 0.0034 17.7 6.3 58 5-64 34-94 (361)
61 3vgz_A Uncharacterized protein 24.9 1E+02 0.0034 17.3 5.5 24 31-59 99-123 (353)
62 3dau_A Dihydrofolate reductase 23.7 30 0.001 18.5 1.0 9 31-39 88-96 (159)
63 2de6_D Ferredoxin component of 23.7 76 0.0026 15.6 3.9 34 3-38 70-104 (115)
64 1mda_H Methylamine dehydrogena 23.5 1.3E+02 0.0044 18.2 6.1 67 4-77 298-365 (368)
65 3tq8_A Dihydrofolate reductase 23.3 38 0.0013 18.5 1.4 9 31-39 90-98 (178)
66 2dk7_A Transcription elongatio 23.2 49 0.0017 15.5 1.6 21 46-66 29-51 (73)
67 1juv_A DHFR, dihydrofolate red 23.1 36 0.0012 18.7 1.3 10 31-40 121-130 (193)
68 2q5x_A Nuclear pore complex pr 22.8 65 0.0022 17.3 2.2 16 47-62 129-144 (155)
69 3jrp_A Fusion protein of prote 22.8 1.1E+02 0.0039 17.2 4.6 28 32-64 69-96 (379)
70 1su3_A Interstitial collagenas 22.4 1.5E+02 0.0052 18.6 4.3 25 31-62 414-438 (450)
71 1vdr_A DHFR, dihydrofolate red 22.4 39 0.0013 17.8 1.3 10 31-40 94-103 (162)
72 3ia4_A Dihydrofolate reductase 22.1 35 0.0012 18.2 1.1 8 32-39 91-98 (162)
73 2qpz_A Naphthalene 1,2-dioxyge 22.0 77 0.0026 15.0 4.4 31 4-36 69-100 (103)
74 1flg_A Protein (quinoprotein e 21.9 1.7E+02 0.0057 18.9 7.5 50 5-62 471-524 (582)
75 2w9h_A DHFR, dihydrofolate red 21.9 40 0.0014 17.7 1.3 9 31-39 87-95 (159)
76 2i7f_A Ferredoxin component of 21.8 80 0.0027 15.1 3.8 32 4-37 70-102 (108)
77 3kep_A Nucleoporin NUP145; nuc 21.7 1.1E+02 0.0038 16.8 3.1 20 47-66 147-166 (174)
78 1egx_A VAsp, vasodilator-stimu 21.3 25 0.00085 17.8 0.4 17 47-63 11-27 (115)
79 3dfr_A Dihydrofolate reductase 21.3 35 0.0012 18.2 0.9 9 31-39 91-99 (162)
80 3q7m_A Lipoprotein YFGL, BAMB; 21.3 1.3E+02 0.0045 17.4 8.1 49 5-61 292-344 (376)
81 2p4o_A Hypothetical protein; p 21.1 1.2E+02 0.0043 17.1 7.1 37 31-70 82-118 (306)
82 3oyo_A Hemopexin fold protein 20.8 1.2E+02 0.0043 17.0 4.8 25 30-61 126-150 (225)
83 4fxk_C Complement C4 gamma cha 20.6 1.1E+02 0.0039 18.1 3.1 32 31-62 226-258 (291)
84 3rg9_A Bifunctional dihydrofol 20.5 28 0.00095 20.0 0.5 8 32-39 155-162 (240)
No 1
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=99.77 E-value=4.4e-18 Score=99.93 Aligned_cols=75 Identities=24% Similarity=0.277 Sum_probs=66.7
Q ss_pred ceecCCCCCeeecCCCc--cceeeeEEECCCCeEEEEcCC-CCCCCCCeEEEEeCCCCcEEeccCCCCCCCceeEEEECC
Q psy6079 3 SSICLHLVFWFPLLLLS--YMCLGVGVLEPEGPLYAVGGH-DGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLNS 79 (79)
Q Consensus 3 ~~~~~~~~~W~~~~~~~--r~~~~~~~~~~~~~iyv~GG~-~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 79 (79)
.+||+.+++|+.++++| |..++++++ +++||++||. .+....+++++||+.+++|+.+++||.+|..|+++++++
T Consensus 120 ~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 197 (315)
T 4asc_A 120 MCYDRLSFKWGESDPLPYVVYGHTVLSH--MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDG 197 (315)
T ss_dssp EEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETT
T ss_pred EEECCCCCcEeECCCCCCcccceeEEEE--CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECC
Confidence 47999999999998665 788888888 9999999998 445568999999999999999999999999999988764
No 2
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=99.76 E-value=5.6e-18 Score=98.86 Aligned_cols=75 Identities=29% Similarity=0.487 Sum_probs=66.8
Q ss_pred ceecCCCCCeeecCCCc--cceeeeEEECCCCeEEEEcCCCCCCCCCeEEEEeCCCCcEEecc-CCCCCCCceeEEEECC
Q psy6079 3 SSICLHLVFWFPLLLLS--YMCLGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIA-PMLSPRSTAGVAVLNS 79 (79)
Q Consensus 3 ~~~~~~~~~W~~~~~~~--r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~~~~r~~~~~~~~~~ 79 (79)
.+||+.+++|+.+++++ |..++++++ +++||++||.++....+++++||+++++|+.++ +|+.+|..|+++++++
T Consensus 223 ~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~ 300 (302)
T 2xn4_A 223 EVYDPTTNAWRQVADMNMCRRNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVIDK 300 (302)
T ss_dssp EEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECSSCCSSCCBSCEEEEEEC
T ss_pred EEEeCCCCCEeeCCCCCCccccCeEEEE--CCEEEEECCcCCCcccccEEEEcCCCCeEEECCcccCcccccceEEEecc
Confidence 47999999999998654 788888888 999999999887666889999999999999997 8999999999998864
No 3
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=99.76 E-value=4.2e-18 Score=100.03 Aligned_cols=75 Identities=15% Similarity=0.202 Sum_probs=67.7
Q ss_pred ceecCCCCCeeecCCCc--cceeeeEEECCCCeEEEEcCCCCCCCCCeEEEEeCCCCcEEeccCCCCCCCceeEEEECC
Q psy6079 3 SSICLHLVFWFPLLLLS--YMCLGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLNS 79 (79)
Q Consensus 3 ~~~~~~~~~W~~~~~~~--r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 79 (79)
.+||+.+++|+.++++| |..++++++ +++||++||.++....+++++||+.+++|+.++++|.+|..++++++++
T Consensus 168 ~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 244 (315)
T 4asc_A 168 CVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVG 244 (315)
T ss_dssp EEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETT
T ss_pred EEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEECC
Confidence 47999999999999665 788899999 9999999998876668899999999999999999999999999988765
No 4
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=99.75 E-value=5.2e-18 Score=98.98 Aligned_cols=75 Identities=35% Similarity=0.551 Sum_probs=67.5
Q ss_pred ceecCCCCCeeecCCCc--cceeeeEEECCCCeEEEEcCCCCCCCCCeEEEEeCCCCcEEeccCCCCCCCceeEEEECC
Q psy6079 3 SSICLHLVFWFPLLLLS--YMCLGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLNS 79 (79)
Q Consensus 3 ~~~~~~~~~W~~~~~~~--r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 79 (79)
.+||+.+++|+.++++| |..++++++ +++||++||..+...++++++||+.+++|+.++++|.+|..++++++++
T Consensus 80 ~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~ 156 (302)
T 2xn4_A 80 DSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGG 156 (302)
T ss_dssp EEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETT
T ss_pred EEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECC
Confidence 47999999999999665 788999999 9999999998876668899999999999999999999999999988764
No 5
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=99.75 E-value=2e-17 Score=96.66 Aligned_cols=74 Identities=9% Similarity=0.097 Sum_probs=66.6
Q ss_pred ceecCCCCCeeecCCCc--cceeeeEEECCCCeEEEEcCCCCCCCCCeEEEEeCCCCcEEeccCCCCCCCceeEEEECC
Q psy6079 3 SSICLHLVFWFPLLLLS--YMCLGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLNS 79 (79)
Q Consensus 3 ~~~~~~~~~W~~~~~~~--r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 79 (79)
.+||+.+++|+.++++| |..++++++ +++||++||.. ....+++++||+.+++|..++++|.+|..|+++++++
T Consensus 27 ~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~-~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~ 102 (306)
T 3ii7_A 27 RYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQ-LFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEG 102 (306)
T ss_dssp EEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBS-SSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEETT
T ss_pred EEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCC-CCCcceEEEEeCCCCeEEECCCCCccccceeEEEECC
Confidence 47999999999998554 888999999 99999999987 5568999999999999999999999999999988764
No 6
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=99.74 E-value=1.4e-17 Score=97.34 Aligned_cols=75 Identities=27% Similarity=0.401 Sum_probs=66.7
Q ss_pred ceecCCCCCeeecCCCc--cceeeeEEECCCCeEEEEcCCC-CCCCCCeEEEEeCCCCcEEeccCCCCCCCceeEEEECC
Q psy6079 3 SSICLHLVFWFPLLLLS--YMCLGVGVLEPEGPLYAVGGHD-GWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLNS 79 (79)
Q Consensus 3 ~~~~~~~~~W~~~~~~~--r~~~~~~~~~~~~~iyv~GG~~-~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 79 (79)
.+||+.+++|+.++++| |..++++++ +++||++||.+ +...++++++||+.+++|+.+++||.+|..|+++++++
T Consensus 73 ~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~ 150 (306)
T 3ii7_A 73 DCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANG 150 (306)
T ss_dssp EEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETT
T ss_pred EEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECC
Confidence 47999999999998654 888999999 99999999987 44558899999999999999999999999999988764
No 7
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=99.74 E-value=2.3e-17 Score=96.69 Aligned_cols=75 Identities=36% Similarity=0.534 Sum_probs=67.4
Q ss_pred ceecCCCCCeeecCCCc--cceeeeEEECCCCeEEEEcCCCCCCCCCeEEEEeCCCCcEEeccCCCCCCCceeEEEECC
Q psy6079 3 SSICLHLVFWFPLLLLS--YMCLGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLNS 79 (79)
Q Consensus 3 ~~~~~~~~~W~~~~~~~--r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 79 (79)
.+||+.+++|+.++++| |..++++++ +++||++||..+...++++++||+.+++|+.+++||.+|..++++++++
T Consensus 140 ~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 216 (308)
T 1zgk_A 140 ERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHN 216 (308)
T ss_dssp EEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETT
T ss_pred EEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEECC
Confidence 47999999999998655 788889999 9999999998876668999999999999999999999999999988764
No 8
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=99.74 E-value=2.5e-17 Score=96.54 Aligned_cols=75 Identities=33% Similarity=0.538 Sum_probs=67.4
Q ss_pred ceecCCCCCeeecCCCc--cceeeeEEECCCCeEEEEcCCCCCCCCCeEEEEeCCCCcEEeccCCCCCCCceeEEEECC
Q psy6079 3 SSICLHLVFWFPLLLLS--YMCLGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLNS 79 (79)
Q Consensus 3 ~~~~~~~~~W~~~~~~~--r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 79 (79)
.+||+.+++|+.++++| |..++++++ +++||++||.++....+++++||+++++|+.++++|.+|..++++++++
T Consensus 187 ~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 263 (308)
T 1zgk_A 187 ECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQG 263 (308)
T ss_dssp EEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETT
T ss_pred EEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEECC
Confidence 47999999999998654 788888999 9999999998876668999999999999999999999999999988764
No 9
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=99.74 E-value=7.7e-18 Score=99.01 Aligned_cols=75 Identities=19% Similarity=0.278 Sum_probs=66.9
Q ss_pred ceecCCCCCeeecCCCc--cceeeeEEECCCCeEEEEcCCCCCCCCCeEEEEeCCCCcEEeccCCCCCCCceeEEEECC
Q psy6079 3 SSICLHLVFWFPLLLLS--YMCLGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLNS 79 (79)
Q Consensus 3 ~~~~~~~~~W~~~~~~~--r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 79 (79)
.+||+.+++|+.++++| |..++++++ +++||++||.+.....+++++||+++++|+.++++|.+|..|+++++++
T Consensus 178 ~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 254 (318)
T 2woz_A 178 FIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLAG 254 (318)
T ss_dssp EEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEETT
T ss_pred EEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEECC
Confidence 47999999999998655 788888899 9999999998776667899999999999999999999999999988764
No 10
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=99.74 E-value=2.3e-17 Score=96.96 Aligned_cols=75 Identities=25% Similarity=0.360 Sum_probs=65.6
Q ss_pred ceecCCCCCeeecCCCc--cceeeeEEECCCCeEEEEcCCCC-CCCCCeEEEEeCCCCcEEeccCCCCCCCceeEEEECC
Q psy6079 3 SSICLHLVFWFPLLLLS--YMCLGVGVLEPEGPLYAVGGHDG-WSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLNS 79 (79)
Q Consensus 3 ~~~~~~~~~W~~~~~~~--r~~~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 79 (79)
.+||+.+++|+.++++| |.+++++++ +++||++||... ....+++++||+.+++|+.++++|.+|..|+++++++
T Consensus 130 ~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 207 (318)
T 2woz_A 130 LCYDPVAAKWSEVKNLPIKVYGHNVISH--NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKG 207 (318)
T ss_dssp EEEETTTTEEEEECCCSSCEESCEEEEE--TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETT
T ss_pred EEEeCCCCCEeECCCCCCcccccEEEEE--CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEECC
Confidence 47999999999998655 788888888 999999999743 3357899999999999999999999999999988764
No 11
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=99.73 E-value=3.6e-17 Score=95.33 Aligned_cols=75 Identities=28% Similarity=0.524 Sum_probs=67.2
Q ss_pred ceecCCCCCeeecCCCc--cceeeeEEECCCCeEEEEcCCCCCCCCCeEEEEeCCCCcEEeccCCCCCCCceeEEEECC
Q psy6079 3 SSICLHLVFWFPLLLLS--YMCLGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLNS 79 (79)
Q Consensus 3 ~~~~~~~~~W~~~~~~~--r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 79 (79)
.+||+.+++|+.++++| |..++++++ +++||++||.++....+++++||+++++|+.++++|.+|..++++++++
T Consensus 178 ~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 254 (301)
T 2vpj_A 178 EKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRG 254 (301)
T ss_dssp EEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETT
T ss_pred EEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECC
Confidence 47999999999998655 788888889 9999999998876668899999999999999999999999999988764
No 12
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=99.72 E-value=6.2e-17 Score=94.30 Aligned_cols=75 Identities=27% Similarity=0.510 Sum_probs=67.3
Q ss_pred ceecCCCCC---eeecCCCc--cceeeeEEECCCCeEEEEcCCCCCCCCCeEEEEeCCCCcEEeccCCCCCCCceeEEEE
Q psy6079 3 SSICLHLVF---WFPLLLLS--YMCLGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVL 77 (79)
Q Consensus 3 ~~~~~~~~~---W~~~~~~~--r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 77 (79)
.+||+.+++ |+.++++| |..++++++ +++||++||..+....+++++||+.+++|+.++++|.+|..|+++++
T Consensus 81 ~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~ 158 (301)
T 2vpj_A 81 ECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA 158 (301)
T ss_dssp EEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE
T ss_pred EEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE
Confidence 478999999 99998655 888999999 99999999988766688999999999999999999999999999887
Q ss_pred CC
Q psy6079 78 NS 79 (79)
Q Consensus 78 ~~ 79 (79)
++
T Consensus 159 ~~ 160 (301)
T 2vpj_A 159 SG 160 (301)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 13
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=99.65 E-value=7.3e-16 Score=91.60 Aligned_cols=75 Identities=16% Similarity=0.229 Sum_probs=63.1
Q ss_pred ceecCC--CCCeeecCCCc---cceeeeEEECCCCeEEEEcCC-C----CCCCCCeEEEEeCCCCcEEeccCCC-CCCCc
Q psy6079 3 SSICLH--LVFWFPLLLLS---YMCLGVGVLEPEGPLYAVGGH-D----GWSYLNTTERFDPRLRQWSFIAPML-SPRST 71 (79)
Q Consensus 3 ~~~~~~--~~~W~~~~~~~---r~~~~~~~~~~~~~iyv~GG~-~----~~~~~~~~~~yd~~~~~W~~~~~~~-~~r~~ 71 (79)
.+||+. +++|+.++++| |..++++++ +++|||+||. . ....++++++||+.+++|+.+++|+ .+|..
T Consensus 34 ~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~ 111 (357)
T 2uvk_A 34 YKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAG 111 (357)
T ss_dssp EEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSS
T ss_pred EEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCccccc
Confidence 368887 48999998554 788999999 9999999998 2 1234789999999999999999998 99999
Q ss_pred eeEEEECC
Q psy6079 72 AGVAVLNS 79 (79)
Q Consensus 72 ~~~~~~~~ 79 (79)
|+++++++
T Consensus 112 ~~~~~~~~ 119 (357)
T 2uvk_A 112 HVTFVHNG 119 (357)
T ss_dssp EEEEEETT
T ss_pred ceEEEECC
Confidence 98887664
No 14
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=99.65 E-value=6.2e-16 Score=91.91 Aligned_cols=75 Identities=20% Similarity=0.219 Sum_probs=62.2
Q ss_pred ceecCCCCCeeecCCCc---cceeeeEEECCCCeEEEEcCCCCCC----------------------------------C
Q psy6079 3 SSICLHLVFWFPLLLLS---YMCLGVGVLEPEGPLYAVGGHDGWS----------------------------------Y 45 (79)
Q Consensus 3 ~~~~~~~~~W~~~~~~~---r~~~~~~~~~~~~~iyv~GG~~~~~----------------------------------~ 45 (79)
.+||+.+++|+.+++++ |..++++++ +++||++||.+... .
T Consensus 89 ~~yd~~~~~W~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (357)
T 2uvk_A 89 HKYNPKTNSWVKLMSHAPMGMAGHVTFVH--NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFF 166 (357)
T ss_dssp EEEETTTTEEEECSCCCSSCCSSEEEEEE--TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCC
T ss_pred EEEeCCCCcEEECCCCCCcccccceEEEE--CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCC
Confidence 47999999999998544 777888888 99999999976431 3
Q ss_pred CCeEEEEeCCCCcEEeccCCCCCCCc-eeEEEECC
Q psy6079 46 LNTTERFDPRLRQWSFIAPMLSPRST-AGVAVLNS 79 (79)
Q Consensus 46 ~~~~~~yd~~~~~W~~~~~~~~~r~~-~~~~~~~~ 79 (79)
++++++||+.+++|+.++++|.+|.. ++++++++
T Consensus 167 ~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~ 201 (357)
T 2uvk_A 167 NKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGD 201 (357)
T ss_dssp CCEEEEEETTTTEEEEEEECSSCCCBSCEEEEETT
T ss_pred cccEEEEeCCCCcEEECCCCCCCCcccccEEEECC
Confidence 58999999999999999999987665 78777654
No 15
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=99.61 E-value=4e-15 Score=95.52 Aligned_cols=75 Identities=20% Similarity=0.259 Sum_probs=64.3
Q ss_pred ceecCCCCCeeecC-C-----C--ccceeeeEEECCCCeEEEEcCCCCCC-CCCeEEEEeCCCCcEEeccCCCCCCCcee
Q psy6079 3 SSICLHLVFWFPLL-L-----L--SYMCLGVGVLEPEGPLYAVGGHDGWS-YLNTTERFDPRLRQWSFIAPMLSPRSTAG 73 (79)
Q Consensus 3 ~~~~~~~~~W~~~~-~-----~--~r~~~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~~~~~~r~~~~ 73 (79)
.+||+.+++|+.++ + + +|.+++++++..+++|||+||..... .++++++||+.+++|+.+++||.+|..|+
T Consensus 415 ~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~ 494 (695)
T 2zwa_A 415 LQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHS 494 (695)
T ss_dssp EEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCE
T ss_pred EEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccce
Confidence 47999999999987 4 3 47888888773367899999987654 58899999999999999999999999999
Q ss_pred EEEE
Q psy6079 74 VAVL 77 (79)
Q Consensus 74 ~~~~ 77 (79)
++++
T Consensus 495 ~~~~ 498 (695)
T 2zwa_A 495 ACSL 498 (695)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 9986
No 16
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=99.52 E-value=3.3e-14 Score=91.29 Aligned_cols=72 Identities=11% Similarity=0.113 Sum_probs=61.1
Q ss_pred ceecCCCCCeeecCCCc--cceeeeEEECCCCeEEEEcCCCCCCCCCeEEEEeCCCCcEEeccC---CCCCCCceeEEEE
Q psy6079 3 SSICLHLVFWFPLLLLS--YMCLGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAP---MLSPRSTAGVAVL 77 (79)
Q Consensus 3 ~~~~~~~~~W~~~~~~~--r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~---~~~~r~~~~~~~~ 77 (79)
.+||+.+++|+.++++| |..++++++. +++|||+||.+... ++++||+.+++|+.+++ +|.+|..|+++++
T Consensus 471 ~~yd~~t~~W~~~~~~p~~R~~h~~~~~~-~~~iyv~GG~~~~~---~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~ 546 (695)
T 2zwa_A 471 WIFDMKTREWSMIKSLSHTRFRHSACSLP-DGNVLILGGVTEGP---AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEF 546 (695)
T ss_dssp EEEETTTTEEEECCCCSBCCBSCEEEECT-TSCEEEECCBCSSC---SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEE
T ss_pred EEEeCCCCcEEECCCCCCCcccceEEEEc-CCEEEEECCCCCCC---CEEEEECCCCceEEccCCCCCCCcccceeEEEE
Confidence 47999999999998665 7788887732 88999999987654 89999999999999986 8899999987765
Q ss_pred C
Q psy6079 78 N 78 (79)
Q Consensus 78 ~ 78 (79)
+
T Consensus 547 ~ 547 (695)
T 2zwa_A 547 D 547 (695)
T ss_dssp E
T ss_pred e
Confidence 4
No 17
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.49 E-value=1.5e-13 Score=87.51 Aligned_cols=73 Identities=18% Similarity=0.071 Sum_probs=59.9
Q ss_pred eecCCCCCeeecC--CCc--cceeeeEEECCCCeEEEEcCCCC------CCCCCeEEEEeCCCCcEEeccCCCCCCCcee
Q psy6079 4 SICLHLVFWFPLL--LLS--YMCLGVGVLEPEGPLYAVGGHDG------WSYLNTTERFDPRLRQWSFIAPMLSPRSTAG 73 (79)
Q Consensus 4 ~~~~~~~~W~~~~--~~~--r~~~~~~~~~~~~~iyv~GG~~~------~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~ 73 (79)
.||+.+++|..+. +|| |..++++++ .+++|||+||.+. .....++++||+.+++|+.+++++.+|..|+
T Consensus 436 ~yd~~~~~W~~~~~~~mp~~R~~~~~~~l-~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs 514 (656)
T 1k3i_A 436 LGEPGTSPNTVFASNGLYFARTFHTSVVL-PDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHS 514 (656)
T ss_dssp CCSTTSCCEEEECTTCCSSCCBSCEEEEC-TTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTE
T ss_pred cCCCCCCCeeEEccCCCCCCcccCCeEEC-CCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCcccccc
Confidence 6899999999875 555 666665554 2889999999652 2347889999999999999999999999999
Q ss_pred EEEE
Q psy6079 74 VAVL 77 (79)
Q Consensus 74 ~~~~ 77 (79)
++++
T Consensus 515 ~a~l 518 (656)
T 1k3i_A 515 ISLL 518 (656)
T ss_dssp EEEE
T ss_pred Hhhc
Confidence 8876
No 18
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.45 E-value=1.3e-13 Score=87.79 Aligned_cols=72 Identities=17% Similarity=0.143 Sum_probs=58.3
Q ss_pred ceecCCCCCeeecCCCc--cceee--eEEECCCCeEEEEcCCCCCCCCCeEEEEeCCCCcEEeccCCCCCCCceeEEEE-
Q psy6079 3 SSICLHLVFWFPLLLLS--YMCLG--VGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVL- 77 (79)
Q Consensus 3 ~~~~~~~~~W~~~~~~~--r~~~~--~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~- 77 (79)
..||+.+++|+.+++++ |..++ ++++ .+++||++||... .++++||+.+++|..+++|+.+|..|+++++
T Consensus 222 ~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~-~~g~lyv~GG~~~----~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~ 296 (656)
T 1k3i_A 222 SSWDPSTGIVSDRTVTVTKHDMFCPGISMD-GNGQIVVTGGNDA----KKTSLYDSSSDSWIPGPDMQVARGYQSSATMS 296 (656)
T ss_dssp EEECTTTCCBCCCEEEECSCCCSSCEEEEC-TTSCEEEECSSST----TCEEEEEGGGTEEEECCCCSSCCSSCEEEECT
T ss_pred EEEeCCCCcEEeCcccCCCCCCccccccCC-CCCCEEEeCCCCC----CceEEecCcCCceeECCCCCccccccceEEec
Confidence 47999999999988553 54443 3322 3899999999764 3799999999999999999999999999887
Q ss_pred CC
Q psy6079 78 NS 79 (79)
Q Consensus 78 ~~ 79 (79)
+|
T Consensus 297 dg 298 (656)
T 1k3i_A 297 DG 298 (656)
T ss_dssp TS
T ss_pred CC
Confidence 53
No 19
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=85.73 E-value=3.7 Score=23.96 Aligned_cols=50 Identities=6% Similarity=-0.081 Sum_probs=32.6
Q ss_pred ceecCCCCCeeecCCCcc--ceeeeEEECCCCeEEEEcCCCCCCCCCeEEEEeCCCCcE
Q psy6079 3 SSICLHLVFWFPLLLLSY--MCLGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQW 59 (79)
Q Consensus 3 ~~~~~~~~~W~~~~~~~r--~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 59 (79)
.++|+.+.+-..-.+++. .+.++... ++++|+.... .+.+.+||+++.+-
T Consensus 68 ~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~-----~~~v~v~D~~t~~~ 119 (262)
T 3nol_A 68 RKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWK-----NGLGFVWNIRNLRQ 119 (262)
T ss_dssp EEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESS-----SSEEEEEETTTCCE
T ss_pred EEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEee-----CCEEEEEECccCcE
Confidence 357888776655444443 33446667 8899998542 36788888877653
No 20
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=82.56 E-value=5.2 Score=23.06 Aligned_cols=50 Identities=8% Similarity=-0.110 Sum_probs=32.9
Q ss_pred ceecCCCCCeeecCCCcc--ceeeeEEECCCCeEEEEcCCCCCCCCCeEEEEeCCCCcE
Q psy6079 3 SSICLHLVFWFPLLLLSY--MCLGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQW 59 (79)
Q Consensus 3 ~~~~~~~~~W~~~~~~~r--~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 59 (79)
+++|+.+++-..-.+++. .+.++... ++++|+.... .+.+.+||+++-+-
T Consensus 46 ~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~-----~~~v~v~D~~tl~~ 97 (243)
T 3mbr_X 46 RKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWR-----NHEGFVYDLATLTP 97 (243)
T ss_dssp EEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESS-----SSEEEEEETTTTEE
T ss_pred EEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEee-----CCEEEEEECCcCcE
Confidence 356777776655444442 34556667 8999998542 36788899877653
No 21
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=78.79 E-value=7.3 Score=22.44 Aligned_cols=49 Identities=24% Similarity=0.321 Sum_probs=33.2
Q ss_pred eeEEECCCCeEEEEcCCCCCCCCCeEEEEeCCCCcEEeccCCCCCCCceeEEEE
Q psy6079 24 GVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVL 77 (79)
Q Consensus 24 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 77 (79)
+.... ++.+|+-.|..+ .+.+..+|+++.+-...-+++..-...+.+..
T Consensus 25 GL~~~--~~~LyestG~~g---~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~ 73 (243)
T 3mbr_X 25 GLFYL--RGHLYESTGETG---RSSVRKVDLETGRILQRAEVPPPYFGAGIVAW 73 (243)
T ss_dssp EEEEE--TTEEEEEECCTT---SCEEEEEETTTCCEEEEEECCTTCCEEEEEEE
T ss_pred cEEEE--CCEEEEECCCCC---CceEEEEECCCCCEEEEEeCCCCcceeEEEEe
Confidence 55556 788999888554 36899999999987665555544444444444
No 22
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=77.36 E-value=8.4 Score=22.37 Aligned_cols=55 Identities=11% Similarity=-0.137 Sum_probs=35.0
Q ss_pred ceecCCCCCeeecC-------CCccceeeeEEECCCCeEEEEcCCCCCCCCCeEEEEeCCCCcE-EeccC
Q psy6079 3 SSICLHLVFWFPLL-------LLSYMCLGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQW-SFIAP 64 (79)
Q Consensus 3 ~~~~~~~~~W~~~~-------~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~ 64 (79)
+.+|+.++++..-- ++......+... ++++|+.... .+.+.++|+.+.+- ..++.
T Consensus 20 ~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~--~~~lyv~~~~-----~~~v~viD~~t~~~~~~i~~ 82 (328)
T 3dsm_A 20 SYYDPATCEVENEVFYRANGFKLGDVAQSMVIR--DGIGWIVVNN-----SHVIFAIDINTFKEVGRITG 82 (328)
T ss_dssp EEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE--TTEEEEEEGG-----GTEEEEEETTTCCEEEEEEC
T ss_pred EEEECCCCEEhhhhHhhhcCcccCccceEEEEE--CCEEEEEEcC-----CCEEEEEECcccEEEEEcCC
Confidence 46788887765421 222333445556 8899998642 36799999998875 34443
No 23
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=77.20 E-value=5.7 Score=23.33 Aligned_cols=48 Identities=10% Similarity=-0.115 Sum_probs=29.6
Q ss_pred eecCCCCCeeecCCCcc--ceeeeEEECCCCeEEEEcCCCCCCCCCeEEEEeCCCCcE
Q psy6079 4 SICLHLVFWFPLLLLSY--MCLGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQW 59 (79)
Q Consensus 4 ~~~~~~~~W~~~~~~~r--~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 59 (79)
++|+.+.+-..-. ++. .+.++... ++++|+.... .+.+.+||+++.+-
T Consensus 79 ~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~-----~~~v~V~D~~Tl~~ 128 (268)
T 3nok_A 79 QLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWT-----EGLLFTWSGMPPQR 128 (268)
T ss_dssp ECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESS-----SCEEEEEETTTTEE
T ss_pred EEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEcc-----CCEEEEEECCcCcE
Confidence 5677766543322 333 23345566 8899998542 36788899887653
No 24
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=74.46 E-value=11 Score=22.09 Aligned_cols=49 Identities=14% Similarity=0.106 Sum_probs=30.1
Q ss_pred eeEEECCCCeEEEEcCCCCCCCCCeEEEEeCCCCcEEeccCCCCCCCceeEEEE
Q psy6079 24 GVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVL 77 (79)
Q Consensus 24 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 77 (79)
+.... ++.+|+..|..+ .+.+.++|+++.+-...-+++..-...+.+..
T Consensus 47 GL~~~--~~~LyestG~~g---~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~ 95 (262)
T 3nol_A 47 GFFYR--NGYFYESTGLNG---RSSIRKVDIESGKTLQQIELGKRYFGEGISDW 95 (262)
T ss_dssp EEEEE--TTEEEEEEEETT---EEEEEEECTTTCCEEEEEECCTTCCEEEEEEE
T ss_pred eEEEE--CCEEEEECCCCC---CceEEEEECCCCcEEEEEecCCccceeEEEEe
Confidence 34444 788999887543 25789999999986554444432233334443
No 25
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=65.06 E-value=19 Score=21.18 Aligned_cols=49 Identities=12% Similarity=-0.130 Sum_probs=29.4
Q ss_pred eecCCCCCeeecCCCccceeeeEEECCCCeEEEEcCCCCCCCCCeEEEEeCCCCcEE
Q psy6079 4 SICLHLVFWFPLLLLSYMCLGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWS 60 (79)
Q Consensus 4 ~~~~~~~~W~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 60 (79)
.||+.+.+-..--+.+..+++++.- ++.+|+.-| .+.+..+|+++.+-.
T Consensus 120 V~D~~Tl~~~~ti~~~~eGwGLt~D--g~~L~vSdG------s~~l~~iDp~T~~v~ 168 (268)
T 3nok_A 120 TWSGMPPQRERTTRYSGEGWGLCYW--NGKLVRSDG------GTMLTFHEPDGFALV 168 (268)
T ss_dssp EEETTTTEEEEEEECSSCCCCEEEE--TTEEEEECS------SSEEEEECTTTCCEE
T ss_pred EEECCcCcEEEEEeCCCceeEEecC--CCEEEEECC------CCEEEEEcCCCCeEE
Confidence 4566554332211223445667766 777888754 357899999987643
No 26
>2lyd_A Decapping protein 1; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster}
Probab=63.28 E-value=6.4 Score=20.65 Aligned_cols=17 Identities=12% Similarity=0.231 Sum_probs=14.3
Q ss_pred CCeEEEEeCCCCcEEec
Q psy6079 46 LNTTERFDPRLRQWSFI 62 (79)
Q Consensus 46 ~~~~~~yd~~~~~W~~~ 62 (79)
...++.||+.+++|++.
T Consensus 37 ~v~vY~f~~~~~~W~K~ 53 (134)
T 2lyd_A 37 HVAFYTFNSSQNEWEKT 53 (134)
T ss_dssp EEEEEEEETTTTEEEEE
T ss_pred eEEEEEecCCcCceeEc
Confidence 35688899999999976
No 27
>3zx7_A Lysenin; toxin, pore forming toxin; HET: PC; 2.84A {Eisenia fetida} PDB: 3zxd_A* 3zxg_A*
Probab=57.07 E-value=13 Score=21.15 Aligned_cols=50 Identities=14% Similarity=0.062 Sum_probs=28.2
Q ss_pred CCeeecCCCc-cceeeeEEECCCCeEEEEcC-CCCCCCCCeEEEEeCCCCcEEec
Q psy6079 10 VFWFPLLLLS-YMCLGVGVLEPEGPLYAVGG-HDGWSYLNTTERFDPRLRQWSFI 62 (79)
Q Consensus 10 ~~W~~~~~~~-r~~~~~~~~~~~~~iyv~GG-~~~~~~~~~~~~yd~~~~~W~~~ 62 (79)
.+|..-..|| |.+-.+... ++.|--.| +-++.+...++|.|-..++|..-
T Consensus 242 qrwal~kalplrhgdvvtf~---n~~ft~sglcyddgpatnvycldkredkwile 293 (309)
T 3zx7_A 242 QRWAINKSLPLRHGDVVTFM---NKYFTRSGLCYDDGPATNVYCLDKREDKWILE 293 (309)
T ss_dssp GCEEESSCSSCBTTCEECEE---ESSSTTEEEEECCCSSCCEEEEETCCCCEEEE
T ss_pred HhhhhcccCccccCcEEEEe---hhhcccCceeccCCCcceeEeecccCcceEEE
Confidence 4787766666 433222222 22222222 22333456799999999999754
No 28
>4fmw_A RNA (guanine-9-)-methyltransferase domain-contain protein 2; structural genomics, structural genomics consortium, SGC, RN modification; HET: SAH; 2.00A {Homo sapiens}
Probab=56.61 E-value=7.4 Score=21.72 Aligned_cols=13 Identities=31% Similarity=0.537 Sum_probs=9.8
Q ss_pred CCeEEEEcCCCCC
Q psy6079 31 EGPLYAVGGHDGW 43 (79)
Q Consensus 31 ~~~iyv~GG~~~~ 43 (79)
.+++||+||.-+.
T Consensus 119 ~~~vYIIGGiVD~ 131 (197)
T 4fmw_A 119 ESKAYVIGGLVDH 131 (197)
T ss_dssp TTSEEEEECCCCT
T ss_pred CCCEEEEEEEEeC
Confidence 5589999996543
No 29
>3kvp_A Uncharacterized protein YMZC; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.40A {Bacillus subtilis}
Probab=51.89 E-value=16 Score=16.96 Aligned_cols=16 Identities=0% Similarity=-0.035 Sum_probs=13.2
Q ss_pred CeEEEEeCCCCcEEec
Q psy6079 47 NTTERFDPRLRQWSFI 62 (79)
Q Consensus 47 ~~~~~yd~~~~~W~~~ 62 (79)
-.++.||++++.-..+
T Consensus 40 iKIykyde~tNeI~Lk 55 (72)
T 3kvp_A 40 IKIYEYNESRNEVKLK 55 (72)
T ss_dssp EEEEEEETTTTEEEEE
T ss_pred EEEEEeCCCCCeEEEE
Confidence 4789999999987655
No 30
>2qkl_A DCP1 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} PDB: 2qkm_A*
Probab=47.61 E-value=3.4 Score=21.51 Aligned_cols=16 Identities=19% Similarity=0.318 Sum_probs=7.7
Q ss_pred CeEEEEeCCCCcEEec
Q psy6079 47 NTTERFDPRLRQWSFI 62 (79)
Q Consensus 47 ~~~~~yd~~~~~W~~~ 62 (79)
..++.||+.+++|++.
T Consensus 33 v~vY~f~~~~~~W~K~ 48 (127)
T 2qkl_A 33 VAVYQFDVGSQKWLKT 48 (127)
T ss_dssp EEEECC------CCEE
T ss_pred EEEEEecCCCCceEEc
Confidence 4678889999999876
No 31
>1q67_A Decapping protein involved in mRNA degradation- DCP1P; beta sandwich, transcription; 2.30A {Saccharomyces cerevisiae} SCOP: b.55.1.7
Probab=47.25 E-value=16 Score=20.94 Aligned_cols=18 Identities=11% Similarity=0.355 Sum_probs=15.1
Q ss_pred CCeEEEEeCCCCcEEecc
Q psy6079 46 LNTTERFDPRLRQWSFIA 63 (79)
Q Consensus 46 ~~~~~~yd~~~~~W~~~~ 63 (79)
...++.||..+++|.+..
T Consensus 43 hasvYkfd~~~~eW~K~~ 60 (231)
T 1q67_A 43 HASLYKWDFKKDEWNKLE 60 (231)
T ss_dssp EEEEEEEETTTTEEEEEE
T ss_pred eEEEEEecCCCCceEecC
Confidence 457899999999999763
No 32
>3nfg_A DNA-directed RNA polymerase I subunit RPA49; triple barrel, transcription, dimerization; 2.51A {Candida glabrata}
Probab=46.09 E-value=18 Score=18.13 Aligned_cols=15 Identities=7% Similarity=0.133 Sum_probs=12.8
Q ss_pred EEEEeCCCCcEEecc
Q psy6079 49 TERFDPRLRQWSFIA 63 (79)
Q Consensus 49 ~~~yd~~~~~W~~~~ 63 (79)
+-+|||++++|+..+
T Consensus 76 VgVyDp~t~~lel~~ 90 (102)
T 3nfg_A 76 VGLYDKQSGKINLYR 90 (102)
T ss_dssp EEEEETTTTEEEEEE
T ss_pred EEEEcCCCCeEEEEE
Confidence 668999999999874
No 33
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens}
Probab=44.83 E-value=21 Score=18.72 Aligned_cols=17 Identities=12% Similarity=0.112 Sum_probs=14.2
Q ss_pred CeEEEEeCCCCcEEecc
Q psy6079 47 NTTERFDPRLRQWSFIA 63 (79)
Q Consensus 47 ~~~~~yd~~~~~W~~~~ 63 (79)
..|..||+.+++|.+..
T Consensus 18 A~Vm~~Dd~tk~WlP~g 34 (130)
T 3syx_A 18 AVVMTRDDSSGGWLPLG 34 (130)
T ss_dssp EEEEEECSSSSCEEESS
T ss_pred EEeeeEcCCCCceEeCC
Confidence 46788999999998864
No 34
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=44.38 E-value=23 Score=17.81 Aligned_cols=17 Identities=12% Similarity=0.298 Sum_probs=14.1
Q ss_pred CeEEEEeCCCCcEEecc
Q psy6079 47 NTTERFDPRLRQWSFIA 63 (79)
Q Consensus 47 ~~~~~yd~~~~~W~~~~ 63 (79)
..+..||+.+++|.+..
T Consensus 11 A~V~~~d~~~~~W~p~~ 27 (112)
T 1evh_A 11 AAVMVYDDANKKWVPAG 27 (112)
T ss_dssp EEEEEEETTTTEEEEGG
T ss_pred EEEEEEcCCCCceEECC
Confidence 46788999999998865
No 35
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=43.94 E-value=21 Score=18.35 Aligned_cols=17 Identities=18% Similarity=0.417 Sum_probs=13.8
Q ss_pred CeEEEEeCCCCcEEecc
Q psy6079 47 NTTERFDPRLRQWSFIA 63 (79)
Q Consensus 47 ~~~~~yd~~~~~W~~~~ 63 (79)
..+..||+.+++|....
T Consensus 11 A~V~~~d~~~~~W~~~g 27 (130)
T 1qc6_A 11 ASVMVYDDTSKKWVPIK 27 (130)
T ss_dssp EEEEEEETTTTEEEECC
T ss_pred EEEEEECCCCCceeECC
Confidence 46788999999998764
No 36
>3nff_A RNA polymerase I subunit A49; tripple barrel, transcription, dimerization; 3.24A {Candida glabrata}
Probab=41.80 E-value=22 Score=18.43 Aligned_cols=15 Identities=7% Similarity=0.133 Sum_probs=12.8
Q ss_pred EEEEeCCCCcEEecc
Q psy6079 49 TERFDPRLRQWSFIA 63 (79)
Q Consensus 49 ~~~yd~~~~~W~~~~ 63 (79)
+-+|||++++|+.++
T Consensus 76 VgVyDP~T~~leL~~ 90 (122)
T 3nff_A 76 VGLYDKQSGKINLYR 90 (122)
T ss_dssp EEEEETTTTEEEEEE
T ss_pred EEEEcCCCCeEEEEE
Confidence 668999999999774
No 37
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=39.57 E-value=51 Score=18.58 Aligned_cols=53 Identities=8% Similarity=-0.157 Sum_probs=28.9
Q ss_pred ceecCCCCCeeecCCCccceeeeEEECCCCeEEEEcCCCCCCCCCeEEEEeCCCCcEEeccC
Q psy6079 3 SSICLHLVFWFPLLLLSYMCLGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAP 64 (79)
Q Consensus 3 ~~~~~~~~~W~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 64 (79)
+++|+.+.+........+ ....+...++++|+.. ...+.+||+++.+++.+..
T Consensus 38 ~~~d~~~~~~~~~~~~~~--~~~i~~~~dG~l~v~~-------~~~l~~~d~~~g~~~~~~~ 90 (297)
T 3g4e_A 38 CRWDSFTKQVQRVTMDAP--VSSVALRQSGGYVATI-------GTKFCALNWKEQSAVVLAT 90 (297)
T ss_dssp EEEETTTCCEEEEECSSC--EEEEEEBTTSSEEEEE-------TTEEEEEETTTTEEEEEEE
T ss_pred EEEECCCCcEEEEeCCCc--eEEEEECCCCCEEEEE-------CCeEEEEECCCCcEEEEEe
Confidence 356666655433321111 1222332366766643 2468899999888876644
No 38
>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3
Probab=39.56 E-value=36 Score=16.87 Aligned_cols=34 Identities=9% Similarity=-0.100 Sum_probs=18.2
Q ss_pred eecCCCCCeeecCCCccceeeeEEECCCCeEEEEcC
Q psy6079 4 SICLHLVFWFPLLLLSYMCLGVGVLEPEGPLYAVGG 39 (79)
Q Consensus 4 ~~~~~~~~W~~~~~~~r~~~~~~~~~~~~~iyv~GG 39 (79)
+||+++++-...+..+...+.+.+. ++.|||.-+
T Consensus 77 ~Fdl~tG~~~~~P~~~l~~~~v~v~--~g~V~v~~~ 110 (119)
T 3c0d_A 77 HFSLKSGQCLEDEAHCLKTWRVTVD--DNQVCYLAK 110 (119)
T ss_dssp EEETTTCBBSSCTTCBCCEECEEES--SSEEEEECC
T ss_pred EEECCCCcCCCCCCceeeEEEEEEE--CCEEEEEeC
Confidence 4666555544444333344555555 777777644
No 39
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Probab=38.70 E-value=31 Score=17.64 Aligned_cols=17 Identities=18% Similarity=0.444 Sum_probs=13.3
Q ss_pred CeEEEEeCCCC-cEEecc
Q psy6079 47 NTTERFDPRLR-QWSFIA 63 (79)
Q Consensus 47 ~~~~~yd~~~~-~W~~~~ 63 (79)
..+..||+.++ .|.+..
T Consensus 11 A~V~~~D~~tk~~W~p~g 28 (120)
T 1ddw_A 11 AHVFQIDPNTKKNWVPTS 28 (120)
T ss_dssp EEEEEECTTTSCSEEESC
T ss_pred EEEEEEcCCCCCceEeCC
Confidence 46888999986 998753
No 40
>3lkm_A MHCK-A, myosin heavy chain kinase A; protein kinase-like fold, ATP-binding, nucleotide- binding, serine/threonine-protein kinase; HET: AMP; 1.60A {Dictyostelium discoideum} PDB: 3lla_A* 3lmi_A* 3lmh_A* 3pdt_A*
Probab=36.32 E-value=22 Score=21.41 Aligned_cols=32 Identities=22% Similarity=0.337 Sum_probs=14.9
Q ss_pred CCeEEEEcCCCCCCCCCeEEEEeCCCCcEEec
Q psy6079 31 EGPLYAVGGHDGWSYLNTTERFDPRLRQWSFI 62 (79)
Q Consensus 31 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 62 (79)
++.+|.-+=.++.......++||+.+++|...
T Consensus 10 ~~~~~~~~~~~~~~e~ai~~~y~~~~~~W~~~ 41 (307)
T 3lkm_A 10 GENLYFQGISSETGEMGILWEFDPIINKWIRL 41 (307)
T ss_dssp ------------CCEEEEEEEEETTTTEEEEE
T ss_pred ccceeeeccCCcCceeeEEEEEcCCCCeEEee
Confidence 55666544333332345678999999999964
No 41
>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} SCOP: b.33.1.0 PDB: 4emj_B*
Probab=35.49 E-value=40 Score=16.20 Aligned_cols=33 Identities=9% Similarity=-0.026 Sum_probs=18.6
Q ss_pred ceecCCCCCeeecCC-CccceeeeEEECCCCeEEEE
Q psy6079 3 SSICLHLVFWFPLLL-LSYMCLGVGVLEPEGPLYAV 37 (79)
Q Consensus 3 ~~~~~~~~~W~~~~~-~~r~~~~~~~~~~~~~iyv~ 37 (79)
.+||+.+++-...+. .+...+.+.+. ++.|||-
T Consensus 66 ~~Fdl~~G~~~~~P~~~~L~~~~v~~~--~g~v~v~ 99 (106)
T 3dqy_A 66 GKFCVRTGKVKALPACKPIKVFPIKVE--GDEVHVD 99 (106)
T ss_dssp CEEETTTCCEEETTCCSCCCEECEEEE--TTEEEEC
T ss_pred CEEeCCCCCEeCCCCCCCccEEEEEEE--CCEEEEE
Confidence 356666666665542 23344555566 7777763
No 42
>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3
Probab=35.44 E-value=42 Score=16.36 Aligned_cols=6 Identities=17% Similarity=0.357 Sum_probs=2.3
Q ss_pred CCeEEE
Q psy6079 31 EGPLYA 36 (79)
Q Consensus 31 ~~~iyv 36 (79)
++.|||
T Consensus 104 ~g~V~v 109 (113)
T 2jo6_A 104 DGVVQL 109 (113)
T ss_dssp TTEEEE
T ss_pred CCEEEE
Confidence 333333
No 43
>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=33.39 E-value=61 Score=17.61 Aligned_cols=34 Identities=15% Similarity=-0.142 Sum_probs=19.2
Q ss_pred ceecCC-CCCeeecCC-CccceeeeEE-ECCCCeEEEEc
Q psy6079 3 SSICLH-LVFWFPLLL-LSYMCLGVGV-LEPEGPLYAVG 38 (79)
Q Consensus 3 ~~~~~~-~~~W~~~~~-~~r~~~~~~~-~~~~~~iyv~G 38 (79)
.+||++ +.+-...+. .+...+.+.+ . ++.||++|
T Consensus 126 ~~Fd~~~tG~~~~gPa~~~L~~y~v~vd~--dG~V~avg 162 (175)
T 4aay_B 126 SVFDPEKGGQQVWGQATQNLPQYVLRVAD--NGDIFAEG 162 (175)
T ss_dssp CEEEGGGTTEEEECSCSSCCCBEEEEECT--TSEEEEEE
T ss_pred CEECCCCCceEecCCCCCCcCEEEEEEEc--CCEEEEEE
Confidence 467776 666665542 1223344444 3 67788876
No 44
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=33.25 E-value=66 Score=18.01 Aligned_cols=50 Identities=8% Similarity=0.054 Sum_probs=28.1
Q ss_pred eecCCCCCeeecCCCccceeeeEEECCCCe-EEEEcCCCCCCCCCeEEEEeCCCCcE
Q psy6079 4 SICLHLVFWFPLLLLSYMCLGVGVLEPEGP-LYAVGGHDGWSYLNTTERFDPRLRQW 59 (79)
Q Consensus 4 ~~~~~~~~W~~~~~~~r~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W 59 (79)
.+|+.+++.......+.... ...+..+++ +|+.+... ..++++|+.+.+.
T Consensus 24 ~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~-----~~i~~~d~~~~~~ 74 (331)
T 3u4y_A 24 FFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFC-----QTLVQIETQLEPP 74 (331)
T ss_dssp EEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTT-----CEEEEEECSSSSC
T ss_pred EEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCC-----CeEEEEECCCCce
Confidence 56777766654433332222 333333554 77665422 4788999988764
No 45
>3mqz_A Uncharacterized conserved protein DUF1054; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE; 1.30A {Leptospirillum rubarum}
Probab=33.02 E-value=60 Score=18.53 Aligned_cols=35 Identities=14% Similarity=-0.138 Sum_probs=27.1
Q ss_pred eecCCCCCeeecCCCcc-----ceeeeEEECCCCeEEEEcCC
Q psy6079 4 SICLHLVFWFPLLLLSY-----MCLGVGVLEPEGPLYAVGGH 40 (79)
Q Consensus 4 ~~~~~~~~W~~~~~~~r-----~~~~~~~~~~~~~iyv~GG~ 40 (79)
+-||..++|-...+.+| .++.+... ++.+||.=+.
T Consensus 75 tvNPP~dTWvAfs~nKRGYK~lPHFqiGl~--~dhlFi~fav 114 (215)
T 3mqz_A 75 RVNPPPETWLALGPEKRGYKSYAHSGVFIG--GRGLSVRFIL 114 (215)
T ss_dssp SSSCCSEEEEEEESSSSCCTTSCEEEEEEE--TTEEEEEEEE
T ss_pred CCCCCccchhhccCCCCccccCCceeeeec--CCeEEEEEEE
Confidence 45788899999987775 67788888 8888886553
No 46
>2a8e_A Hypothetical protein YKTB; X-RAY, NESG, Q45498, structural genomics, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: d.296.1.1
Probab=32.66 E-value=64 Score=18.49 Aligned_cols=35 Identities=11% Similarity=0.100 Sum_probs=27.0
Q ss_pred eecCCCCCeeecCCCcc-----ceeeeEEECCCCeEEEEcCC
Q psy6079 4 SICLHLVFWFPLLLLSY-----MCLGVGVLEPEGPLYAVGGH 40 (79)
Q Consensus 4 ~~~~~~~~W~~~~~~~r-----~~~~~~~~~~~~~iyv~GG~ 40 (79)
+-||..++|-...+.+| .++.+... ++.+||.=+.
T Consensus 64 tvNPP~dTWvAfs~nKRGYK~lPHFqiGl~--~dhlFi~~av 103 (220)
T 2a8e_A 64 SVNPPADSWVAFANSKRGYKKLPHFQIGLW--ESHVFVWFAI 103 (220)
T ss_dssp CSSCCSCEEEEEESCSSCSTTSCEEEEEEC--SSEEEEEEEE
T ss_pred CCCCCccceehccCCCCccccCCceeeeec--CCeEEEEEEE
Confidence 35788899999987776 56777777 8888887553
No 47
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=31.66 E-value=69 Score=17.75 Aligned_cols=24 Identities=13% Similarity=0.140 Sum_probs=18.7
Q ss_pred CCeEEEEcCCCCCCCCCeEEEEeCCCCcEEe
Q psy6079 31 EGPLYAVGGHDGWSYLNTTERFDPRLRQWSF 61 (79)
Q Consensus 31 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 61 (79)
++++|+|-| +..+.||..+++-..
T Consensus 174 ~g~~YfFkg-------~~y~rf~~~~~~v~~ 197 (207)
T 1pex_A 174 NGYIYFFNG-------PIQFEYSIWSNRIVR 197 (207)
T ss_dssp TTEEEEEET-------TEEEEEETTTTEEEE
T ss_pred CCcEEEEEC-------CEEEEEeCCccEEec
Confidence 889999976 568889988776543
No 48
>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3
Probab=31.56 E-value=53 Score=16.62 Aligned_cols=33 Identities=15% Similarity=-0.063 Sum_probs=17.2
Q ss_pred eecCCCCCeeecCCCccceeeeEEECCCCeEEEEc
Q psy6079 4 SICLHLVFWFPLLLLSYMCLGVGVLEPEGPLYAVG 38 (79)
Q Consensus 4 ~~~~~~~~W~~~~~~~r~~~~~~~~~~~~~iyv~G 38 (79)
+||+++++-...+..+...+.+.+. ++.|||.-
T Consensus 76 ~Fdl~tG~~~~~P~~~L~~~~v~v~--~g~V~V~~ 108 (130)
T 2jza_A 76 HFRLYDGFCLEDGAYSVAAYDTQVT--NGNVQISI 108 (130)
T ss_dssp EEETTTCCBSSCCSSCCBCCCEEES--SSEEEEEC
T ss_pred EEeCCCcCCCCCCcCcceEEEEEEE--CCEEEEEe
Confidence 4566555544443323334445555 77777753
No 49
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=31.38 E-value=68 Score=17.56 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=17.4
Q ss_pred CCCCeEEEEcCCCCCCCCCeEEEEeCCCCc
Q psy6079 29 EPEGPLYAVGGHDGWSYLNTTERFDPRLRQ 58 (79)
Q Consensus 29 ~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 58 (79)
..++++|+|-| +..+.||..+++
T Consensus 107 ~~~g~~yfFkg-------~~ywr~d~~~~~ 129 (195)
T 1itv_A 107 SGRGKMLLFSG-------RRLWRFDVKAQM 129 (195)
T ss_dssp CSTTEEEEEET-------TEEEEEETTTTE
T ss_pred cCCCeEEEEeC-------CEEEEEeCCccc
Confidence 34789999976 467889987754
No 50
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=31.18 E-value=34 Score=19.54 Aligned_cols=56 Identities=13% Similarity=-0.063 Sum_probs=28.8
Q ss_pred ecCCCCCeeecCCCc-cceeeeEEECCCCeEEEEcCCCCCCCCCeEEEEeCCCCcEEecc
Q psy6079 5 ICLHLVFWFPLLLLS-YMCLGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIA 63 (79)
Q Consensus 5 ~~~~~~~W~~~~~~~-r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 63 (79)
+|..+.+++.+.... .......++..++++|+.+...+ ...+..||..+.+++.+.
T Consensus 23 ~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~~---~~~v~~~~~~~g~~~~~~ 79 (347)
T 3hfq_A 23 LDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKEDD---EGGIAAWQIDGQTAHKLN 79 (347)
T ss_dssp EETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEETT---EEEEEEEEEETTEEEEEE
T ss_pred EcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecCC---CceEEEEEecCCcEEEee
Confidence 455556665533111 11222233334777777653211 256888888777766553
No 51
>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans}
Probab=30.54 E-value=55 Score=16.27 Aligned_cols=35 Identities=11% Similarity=-0.127 Sum_probs=21.7
Q ss_pred ceecCCCCCeeecCC-CccceeeeEEECCCCeEEEEcC
Q psy6079 3 SSICLHLVFWFPLLL-LSYMCLGVGVLEPEGPLYAVGG 39 (79)
Q Consensus 3 ~~~~~~~~~W~~~~~-~~r~~~~~~~~~~~~~iyv~GG 39 (79)
.+||+.+++-...+. .+...+.+.+. ++.|||.-.
T Consensus 77 ~~Fdl~tG~~~~~P~~~~L~~~~v~v~--~g~V~v~~~ 112 (121)
T 3gce_A 77 GRFDVRTGAPTALPCVLPVRAYDVVVD--GTEILVAPK 112 (121)
T ss_dssp CEEETTTCCEEETTCCSCCCBCCEEEE--TTEEEECCC
T ss_pred CEEcCCCccEeCCCCcCCcceEEEEEE--CCEEEEEEC
Confidence 467777776666552 23345566666 888887543
No 52
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=29.56 E-value=86 Score=18.15 Aligned_cols=36 Identities=14% Similarity=0.151 Sum_probs=24.2
Q ss_pred eeeEEECCCCeEEEEcCCCCCCCCCeEEEEeCCCCcEEec
Q psy6079 23 LGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFI 62 (79)
Q Consensus 23 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 62 (79)
.++..- .++.+|+..|..+ .+.+.++|+.+.+-...
T Consensus 24 ~Gl~~~-~dg~Lyvstg~~~---~s~v~~iD~~tg~v~~~ 59 (266)
T 2iwa_A 24 QGLVYA-ENDTLFESTGLYG---RSSVRQVALQTGKVENI 59 (266)
T ss_dssp EEEEEC-STTEEEEEECSTT---TCEEEEEETTTCCEEEE
T ss_pred ccEEEe-CCCeEEEECCCCC---CCEEEEEECCCCCEEEE
Confidence 344444 2478999876322 36899999999986544
No 53
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=29.34 E-value=75 Score=17.40 Aligned_cols=21 Identities=38% Similarity=0.610 Sum_probs=16.3
Q ss_pred CCeEEEEcCCCCCCCCCeEEEEeCCCCc
Q psy6079 31 EGPLYAVGGHDGWSYLNTTERFDPRLRQ 58 (79)
Q Consensus 31 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 58 (79)
++++|++-| +..++||..+++
T Consensus 109 ~g~~yfFkG-------~~yw~yd~~~~~ 129 (196)
T 3c7x_A 109 NGKTYFFRG-------NKYYRFNEELRA 129 (196)
T ss_dssp TTEEEEEET-------TEEEEEETTTTE
T ss_pred CCEEEEEEC-------CEEEEEeCCccc
Confidence 689999976 467889987754
No 54
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A
Probab=29.29 E-value=50 Score=16.74 Aligned_cols=17 Identities=12% Similarity=0.136 Sum_probs=13.8
Q ss_pred CeEEEEeCCCCcEEecc
Q psy6079 47 NTTERFDPRLRQWSFIA 63 (79)
Q Consensus 47 ~~~~~yd~~~~~W~~~~ 63 (79)
..+..||+.++.|.+..
T Consensus 11 A~V~~~d~~~~~W~p~~ 27 (118)
T 1xod_A 11 AVVMTRDDSSGGWLQLG 27 (118)
T ss_dssp EEEEEECSSSSCEEEGG
T ss_pred EEEeeEcCCCCCEeeCC
Confidence 45788999999998764
No 55
>3pbp_B Nucleoporin NUP116/NSP116; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 2aiv_A
Probab=28.32 E-value=48 Score=17.65 Aligned_cols=16 Identities=25% Similarity=0.480 Sum_probs=13.7
Q ss_pred CeEEEEeCCCCcEEec
Q psy6079 47 NTTERFDPRLRQWSFI 62 (79)
Q Consensus 47 ~~~~~yd~~~~~W~~~ 62 (79)
..+..||+.+..|.-.
T Consensus 125 ~~FvsYd~~tG~W~F~ 140 (148)
T 3pbp_B 125 SKFESYDADSGTYVFI 140 (148)
T ss_dssp SEEEEECTTTCCEEEE
T ss_pred CEEEEEeCCCcEEEEE
Confidence 5688999999999864
No 56
>3nf5_A Nucleoporin NUP116; nuclear pore complex, glebs domain, structural genom 2, protein structure initiative; 1.94A {Candida glabrata}
Probab=28.02 E-value=48 Score=18.02 Aligned_cols=16 Identities=25% Similarity=0.536 Sum_probs=13.7
Q ss_pred CeEEEEeCCCCcEEec
Q psy6079 47 NTTERFDPRLRQWSFI 62 (79)
Q Consensus 47 ~~~~~yd~~~~~W~~~ 62 (79)
..+..||+.+..|.-.
T Consensus 136 ~~FvsYd~~tG~W~F~ 151 (164)
T 3nf5_A 136 THFESYDPASGTYCFT 151 (164)
T ss_dssp CEEEEEETTTTEEEEE
T ss_pred CEEEEEeCCCcEEEEE
Confidence 5688999999999864
No 57
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A
Probab=27.40 E-value=88 Score=17.59 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=16.4
Q ss_pred CCeEEEEcCCCCCCCCCeEEEEeCCCCc
Q psy6079 31 EGPLYAVGGHDGWSYLNTTERFDPRLRQ 58 (79)
Q Consensus 31 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 58 (79)
++++|+|-| +..++||..+++
T Consensus 129 ~~k~yfFkG-------~~yw~~d~~~~~ 149 (227)
T 3lp9_A 129 GKEVYLFKG-------DQYARIDYGSNS 149 (227)
T ss_dssp TTEEEEEET-------TEEEEEETTTTE
T ss_pred CCEEEEEEC-------CEEEEEeCCCcc
Confidence 689999977 568889887654
No 58
>2w7q_A Outer-membrane lipoprotein carrier protein; periplasmic chaperone, lipoprotein transport, transport, CHA protein transport; 1.88A {Pseudomonas aeruginosa}
Probab=26.78 E-value=81 Score=16.98 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=13.1
Q ss_pred CeEEEEeCCCCcEEec
Q psy6079 47 NTTERFDPRLRQWSFI 62 (79)
Q Consensus 47 ~~~~~yd~~~~~W~~~ 62 (79)
..++.||+..+++...
T Consensus 84 ~~v~~yd~~~~qv~~~ 99 (204)
T 2w7q_A 84 EKVWLYDPDLEQVTIQ 99 (204)
T ss_dssp TEEEEEETTTTEEEEE
T ss_pred CEEEEEcCCcCEEEEE
Confidence 5799999999988654
No 59
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=26.65 E-value=90 Score=17.43 Aligned_cols=22 Identities=14% Similarity=0.288 Sum_probs=16.9
Q ss_pred CCCeEEEEcCCCCCCCCCeEEEEeCCCCc
Q psy6079 30 PEGPLYAVGGHDGWSYLNTTERFDPRLRQ 58 (79)
Q Consensus 30 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 58 (79)
.++++|+|-| +..+.||..+++
T Consensus 134 ~~g~~YfFkG-------~~ywr~d~~~~~ 155 (218)
T 1gen_A 134 KNKKTYIFAG-------DKFWRYNEVKKK 155 (218)
T ss_dssp TTTEEEEEET-------TEEEEEETTTTE
T ss_pred CCCeEEEEEC-------CEEEEEECcccc
Confidence 3789999976 568889987764
No 60
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=25.73 E-value=1e+02 Score=17.67 Aligned_cols=58 Identities=12% Similarity=0.029 Sum_probs=25.6
Q ss_pred ecCCCCCeeecCCCccceeeeEEECCCCe-EEEEcCCCCCCCCCeE--EEEeCCCCcEEeccC
Q psy6079 5 ICLHLVFWFPLLLLSYMCLGVGVLEPEGP-LYAVGGHDGWSYLNTT--ERFDPRLRQWSFIAP 64 (79)
Q Consensus 5 ~~~~~~~W~~~~~~~r~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~--~~yd~~~~~W~~~~~ 64 (79)
+|+.+.+.+.+...........++..+++ +|+.+...+. ...+ +.++..+.+.+.+..
T Consensus 34 ~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~--~~~v~~~~~~~~~g~~~~~~~ 94 (361)
T 3scy_A 34 FNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKD--QAAVSAFAFDKEKGTLHLLNT 94 (361)
T ss_dssp EETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSST--TCEEEEEEEETTTTEEEEEEE
T ss_pred EeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCC--CCcEEEEEEeCCCCcEEEeeE
Confidence 45555665554322111222233333555 6665432111 2344 445555566665543
No 61
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=24.90 E-value=1e+02 Score=17.35 Aligned_cols=24 Identities=8% Similarity=0.102 Sum_probs=16.1
Q ss_pred CC-eEEEEcCCCCCCCCCeEEEEeCCCCcE
Q psy6079 31 EG-PLYAVGGHDGWSYLNTTERFDPRLRQW 59 (79)
Q Consensus 31 ~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W 59 (79)
++ .+|+.+..+ ..+.++|+.+.+-
T Consensus 99 dg~~l~v~~~~~-----~~v~~~d~~~~~~ 123 (353)
T 3vgz_A 99 TTQTLWFGNTVN-----SAVTAIDAKTGEV 123 (353)
T ss_dssp TTTEEEEEETTT-----TEEEEEETTTCCE
T ss_pred CCCEEEEEecCC-----CEEEEEeCCCCee
Confidence 44 477765432 4788999988764
No 62
>3dau_A Dihydrofolate reductase; oxidoreductase, pseudo-rossmann fold, adenine nucleotide BIN domain, antibiotic resistance, methotrexate resistance; HET: MTX NAP; 1.50A {Escherichia coli} SCOP: c.71.1.1 PDB: 1ddr_A* 1dds_A* 3k74_A 1ra9_A* 1dre_A* 1drh_A* 1dyi_A* 1dyh_A* 1jol_A* 1jom_A* 1ra1_A* 1dyj_A* 1ra3_A* 1ra8_A* 1ra2_A* 1rb2_A* 1rb3_A* 1rc4_A* 1rd7_A* 1re7_A* ...
Probab=23.75 E-value=30 Score=18.49 Aligned_cols=9 Identities=22% Similarity=0.556 Sum_probs=7.6
Q ss_pred CCeEEEEcC
Q psy6079 31 EGPLYAVGG 39 (79)
Q Consensus 31 ~~~iyv~GG 39 (79)
++.+||+||
T Consensus 88 ~~~i~iiGG 96 (159)
T 3dau_A 88 VPEIMVIGG 96 (159)
T ss_dssp CSCEEECCC
T ss_pred CCCEEEECC
Confidence 457999999
No 63
>2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D*
Probab=23.73 E-value=76 Score=15.56 Aligned_cols=34 Identities=18% Similarity=0.152 Sum_probs=18.0
Q ss_pred ceecCCCCCeeecCC-CccceeeeEEECCCCeEEEEc
Q psy6079 3 SSICLHLVFWFPLLL-LSYMCLGVGVLEPEGPLYAVG 38 (79)
Q Consensus 3 ~~~~~~~~~W~~~~~-~~r~~~~~~~~~~~~~iyv~G 38 (79)
.+||+.+++-...+. .+...+.+.+. ++.|||.-
T Consensus 70 ~~Fdl~tG~~~~~P~~~~L~~~~v~~~--~g~V~v~~ 104 (115)
T 2de6_D 70 GAFNVCTGMPASSPCTVPLGVFEVEVK--EGEVYVAG 104 (115)
T ss_dssp CEEETTTCCEEETTCCSCCCEEEEEES--SSEEEEEE
T ss_pred CEEcCCCcCEeCCCCcCCCCEEEEEEE--CCEEEEec
Confidence 356666666555442 22333444455 66777653
No 64
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=23.51 E-value=1.3e+02 Score=18.19 Aligned_cols=67 Identities=6% Similarity=-0.080 Sum_probs=35.1
Q ss_pred eecCCCCCeeecCCCccceeeeEEECCCCe-EEEEcCCCCCCCCCeEEEEeCCCCcEEeccCCCCCCCceeEEEE
Q psy6079 4 SICLHLVFWFPLLLLSYMCLGVGVLEPEGP-LYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVL 77 (79)
Q Consensus 4 ~~~~~~~~W~~~~~~~r~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 77 (79)
.+|+.+.+-..--+.+....++..- .+++ +|+..+.. .+++.++|..+. +.+..++..+.-.+.++.
T Consensus 298 ViD~~t~~vv~~i~vg~~p~gi~~s-~Dg~~l~va~~~~----~~~VsVID~~t~--kvv~~I~vg~~P~~i~~~ 365 (368)
T 1mda_H 298 SVTASVGQTSGPISNGHDSDAIIAA-QDGASDNYANSAG----TEVLDIYDAASD--QDQSSVELDKGPESLSVQ 365 (368)
T ss_dssp EEESSSCCEEECCEEEEEECEEEEC-CSSSCEEEEEETT----TTEEEEEESSSC--EEEEECCCCSCCCEEECC
T ss_pred EEECCCCeEEEEEECCCCcceEEEC-CCCCEEEEEccCC----CCeEEEEECCCC--cEEEEEECCCCCCEEEee
Confidence 4565554332211222333333333 2554 77765411 368999998774 455666666665555543
No 65
>3tq8_A Dihydrofolate reductase; oxidoreductase-oxidoreductase inhib complex; HET: NDP TOP; 1.90A {Coxiella burnetii} SCOP: c.71.1.0 PDB: 3tq9_A* 3tqa_A* 3tqb_A*
Probab=23.33 E-value=38 Score=18.49 Aligned_cols=9 Identities=33% Similarity=0.671 Sum_probs=7.4
Q ss_pred CCeEEEEcC
Q psy6079 31 EGPLYAVGG 39 (79)
Q Consensus 31 ~~~iyv~GG 39 (79)
.+.+||+||
T Consensus 90 ~~~i~viGG 98 (178)
T 3tq8_A 90 EPEVIIIGG 98 (178)
T ss_dssp CSEEEEEEC
T ss_pred CCCEEEECC
Confidence 357999999
No 66
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.23 E-value=49 Score=15.49 Aligned_cols=21 Identities=14% Similarity=0.313 Sum_probs=14.4
Q ss_pred CCeEEEEeCCCCc--EEeccCCC
Q psy6079 46 LNTTERFDPRLRQ--WSFIAPML 66 (79)
Q Consensus 46 ~~~~~~yd~~~~~--W~~~~~~~ 66 (79)
...++.||+.|++ |+.-..+.
T Consensus 29 dGR~fyyN~~Tk~S~WekP~eLk 51 (73)
T 2dk7_A 29 DERVFFYNPTTRLSMWDRPDDLI 51 (73)
T ss_dssp SSCEEEEETTTTEECSSCCTTTT
T ss_pred CCCEEEecCcccceeccCChHhc
Confidence 3567889998884 87655443
No 67
>1juv_A DHFR, dihydrofolate reductase; complexed with NADPH, oxidoreductase; HET: NDP; 1.70A {Enterobacteria phage T4} SCOP: c.71.1.1
Probab=23.15 E-value=36 Score=18.70 Aligned_cols=10 Identities=20% Similarity=0.531 Sum_probs=8.1
Q ss_pred CCeEEEEcCC
Q psy6079 31 EGPLYAVGGH 40 (79)
Q Consensus 31 ~~~iyv~GG~ 40 (79)
++.|||+||.
T Consensus 121 ~~~I~ViGG~ 130 (193)
T 1juv_A 121 NSKVSVIGGP 130 (193)
T ss_dssp TSCEEEEECH
T ss_pred CCcEEEECcH
Confidence 5689999993
No 68
>2q5x_A Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis, precursor, protein transport; 1.90A {Homo sapiens} PDB: 2q5y_A 3tkn_C
Probab=22.85 E-value=65 Score=17.28 Aligned_cols=16 Identities=19% Similarity=0.582 Sum_probs=13.5
Q ss_pred CeEEEEeCCCCcEEec
Q psy6079 47 NTTERFDPRLRQWSFI 62 (79)
Q Consensus 47 ~~~~~yd~~~~~W~~~ 62 (79)
..+..||+.+..|.-.
T Consensus 129 ~~FvsYd~~tG~W~F~ 144 (155)
T 2q5x_A 129 AQFKEYRPETGSWVFK 144 (155)
T ss_dssp CEEEEEETTTTEEEEE
T ss_pred CEEEEEeCCCcEEEEE
Confidence 5678899999999864
No 69
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=22.76 E-value=1.1e+02 Score=17.22 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=18.5
Q ss_pred CeEEEEcCCCCCCCCCeEEEEeCCCCcEEeccC
Q psy6079 32 GPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAP 64 (79)
Q Consensus 32 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 64 (79)
+.+.+.|+.+ ..+.+||..+.+|..+..
T Consensus 69 ~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~ 96 (379)
T 3jrp_A 69 GTILASCSYD-----GKVLIWKEENGRWSQIAV 96 (379)
T ss_dssp CSEEEEEETT-----SCEEEEEEETTEEEEEEE
T ss_pred CCEEEEeccC-----CEEEEEEcCCCceeEeee
Confidence 5666666644 457888888887765543
No 70
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=22.42 E-value=1.5e+02 Score=18.62 Aligned_cols=25 Identities=24% Similarity=0.537 Sum_probs=19.2
Q ss_pred CCeEEEEcCCCCCCCCCeEEEEeCCCCcEEec
Q psy6079 31 EGPLYAVGGHDGWSYLNTTERFDPRLRQWSFI 62 (79)
Q Consensus 31 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 62 (79)
++++|+|-| +..++||..+.+-...
T Consensus 414 ~g~~YFFkg-------~~ywr~d~~~~~v~~~ 438 (450)
T 1su3_A 414 DGFFYFFHG-------TRQYKFDPKTKRILTL 438 (450)
T ss_dssp TTEEEEEET-------TEEEEEETTTTEEEEE
T ss_pred CCeEEEEeC-------CEEEEEECCcceEecc
Confidence 889999976 5678899888765543
No 71
>1vdr_A DHFR, dihydrofolate reductase; oxidoreductase, halophilic enzyme; 2.55A {Haloferax volcanii} SCOP: c.71.1.1 PDB: 2ith_A 2jyb_A
Probab=22.36 E-value=39 Score=17.75 Aligned_cols=10 Identities=30% Similarity=0.717 Sum_probs=7.9
Q ss_pred CCeEEEEcCC
Q psy6079 31 EGPLYAVGGH 40 (79)
Q Consensus 31 ~~~iyv~GG~ 40 (79)
++.+||+||.
T Consensus 94 ~~~i~viGG~ 103 (162)
T 1vdr_A 94 AETAYVIGGA 103 (162)
T ss_dssp CSCEEEEECH
T ss_pred CCcEEEECCH
Confidence 4679999983
No 72
>3ia4_A Dihydrofolate reductase; NADPH, methotrexate, oxidoreductase; HET: NDP MTX; 1.70A {Moritella profunda} SCOP: c.71.1.0 PDB: 3ia5_A 2zza_A*
Probab=22.12 E-value=35 Score=18.21 Aligned_cols=8 Identities=38% Similarity=0.750 Sum_probs=7.1
Q ss_pred CeEEEEcC
Q psy6079 32 GPLYAVGG 39 (79)
Q Consensus 32 ~~iyv~GG 39 (79)
+.+||+||
T Consensus 91 ~~i~viGG 98 (162)
T 3ia4_A 91 EELMIIGG 98 (162)
T ss_dssp SEEEECCC
T ss_pred CCEEEECC
Confidence 57999999
No 73
>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida}
Probab=22.02 E-value=77 Score=15.02 Aligned_cols=31 Identities=3% Similarity=-0.231 Sum_probs=15.3
Q ss_pred eecCCCCCeeecCCC-ccceeeeEEECCCCeEEE
Q psy6079 4 SICLHLVFWFPLLLL-SYMCLGVGVLEPEGPLYA 36 (79)
Q Consensus 4 ~~~~~~~~W~~~~~~-~r~~~~~~~~~~~~~iyv 36 (79)
+||+.+++-...+.. +...+.+.+. ++.|||
T Consensus 69 ~Fd~~~G~~~~~P~~~~L~~~~v~~~--~g~v~v 100 (103)
T 2qpz_A 69 RFDVCTGKALCAPVTQNIKTYPVKIE--NLRVMI 100 (103)
T ss_dssp EEETTTCCEEETTCCSCCCEECEEEE--TTEEEE
T ss_pred EEeCCCCCEeCCCCCCCCCEEeEEEE--CCEEEE
Confidence 566655555554421 2233444445 666665
No 74
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=21.94 E-value=1.7e+02 Score=18.88 Aligned_cols=50 Identities=14% Similarity=0.160 Sum_probs=29.8
Q ss_pred ecCCCC--CeeecCCCccceeeeEEECCCCeEEEEcCCCCCCCCCeEEEEeCCCCc--EEec
Q psy6079 5 ICLHLV--FWFPLLLLSYMCLGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQ--WSFI 62 (79)
Q Consensus 5 ~~~~~~--~W~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~ 62 (79)
+|+.+. .|+.-...+......+.. ++.+|+ |.. ...+..||.++.+ |+.-
T Consensus 471 ~D~~tG~~~W~~~~~~~~~~g~~~ta--gglvf~-g~~-----dg~l~A~D~~tG~~lW~~~ 524 (582)
T 1flg_A 471 MDPVSGKVVWEHKEHLPLWAGVLATA--GNLVFT-GTG-----DGYFKAFDAKSGKELWKFQ 524 (582)
T ss_dssp ECTTTCCEEEEEEESSCCCSCCEEET--TTEEEE-ECT-----TSEEEEEETTTCCEEEEEE
T ss_pred EECCCCCEEEEecCCCCCcccceEeC--CCEEEE-ECC-----CCcEEEEECCCCCEEEEec
Confidence 466654 477654444433334444 677776 432 2578999998775 7653
No 75
>2w9h_A DHFR, dihydrofolate reductase; oxidoreductase, one-carbon metabolism; HET: TOP; 1.48A {Staphylococcus aureus} PDB: 2w9g_A* 3sqy_X* 3srq_X* 3srr_X* 3srs_X* 3sru_X* 3srw_X* 3frd_X* 3fre_X* 3frf_X* 3fyv_X* 3fyw_X* 3sr5_X* 3frb_X* 3fra_X* 3fy8_X* 3fy9_X* 3fq0_A* 3f0b_X* 3f0s_X* ...
Probab=21.89 E-value=40 Score=17.71 Aligned_cols=9 Identities=33% Similarity=0.903 Sum_probs=7.5
Q ss_pred CCeEEEEcC
Q psy6079 31 EGPLYAVGG 39 (79)
Q Consensus 31 ~~~iyv~GG 39 (79)
++.|||+||
T Consensus 87 ~~~i~viGG 95 (159)
T 2w9h_A 87 PGHVFIFGG 95 (159)
T ss_dssp CSCEEEEEC
T ss_pred CCcEEEECh
Confidence 467999998
No 76
>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae}
Probab=21.83 E-value=80 Score=15.14 Aligned_cols=32 Identities=9% Similarity=-0.099 Sum_probs=13.3
Q ss_pred eecCCCCCeeecCC-CccceeeeEEECCCCeEEEE
Q psy6079 4 SICLHLVFWFPLLL-LSYMCLGVGVLEPEGPLYAV 37 (79)
Q Consensus 4 ~~~~~~~~W~~~~~-~~r~~~~~~~~~~~~~iyv~ 37 (79)
+||+.+++-...+. .+...+.+.+. ++.|||.
T Consensus 70 ~Fdl~tG~~~~~P~~~~L~~~~v~~~--~g~v~v~ 102 (108)
T 2i7f_A 70 SFDIATGAAKAFPCQIPIKTYPVTIE--DGWVCID 102 (108)
T ss_dssp EEETTTCCBCSTTCCSCCCEECEEEE--TTEEEEE
T ss_pred EEeCCCcCEeCCCCCCCccEEeEEEE--CCEEEEe
Confidence 45554444433331 12223334444 5555553
No 77
>3kep_A Nucleoporin NUP145; nuclear pore complex, NUP145-N,yeast, autoproteolysi protein maturation, post-translational modification; 1.82A {Saccharomyces cerevisiae} PDB: 3kes_A*
Probab=21.74 E-value=1.1e+02 Score=16.78 Aligned_cols=20 Identities=15% Similarity=0.340 Sum_probs=15.5
Q ss_pred CeEEEEeCCCCcEEeccCCC
Q psy6079 47 NTTERFDPRLRQWSFIAPML 66 (79)
Q Consensus 47 ~~~~~yd~~~~~W~~~~~~~ 66 (79)
..+..||+.+..|.-.-.-.
T Consensus 147 ~~FisYd~~tG~W~F~V~H~ 166 (174)
T 3kep_A 147 MNYISYNPFGGTWTFKVNHF 166 (174)
T ss_dssp SEEEEEETTTTEEEEEESCC
T ss_pred CEEEEEeCCCcEEEEEEecc
Confidence 56788999999998754443
No 78
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4
Probab=21.33 E-value=25 Score=17.78 Aligned_cols=17 Identities=18% Similarity=0.302 Sum_probs=13.0
Q ss_pred CeEEEEeCCCCcEEecc
Q psy6079 47 NTTERFDPRLRQWSFIA 63 (79)
Q Consensus 47 ~~~~~yd~~~~~W~~~~ 63 (79)
..+..||+.+++|.+..
T Consensus 11 A~V~~~d~~~~~W~p~~ 27 (115)
T 1egx_A 11 ATVMLYDDGNKRWLPAG 27 (115)
T ss_dssp EECBEECTTTSSCCBSS
T ss_pred EEEEEEcCCCCceeECC
Confidence 35678999999997654
No 79
>3dfr_A Dihydrofolate reductase; oxido-reductase; HET: NDP MTX; 1.70A {Lactobacillus casei} SCOP: c.71.1.1 PDB: 1ao8_A* 1bzf_A* 1dis_A* 1diu_A* 1lud_A* 2hm9_A* 2hqp_A* 2l28_A 2lf1_A*
Probab=21.28 E-value=35 Score=18.18 Aligned_cols=9 Identities=33% Similarity=0.615 Sum_probs=7.5
Q ss_pred CCeEEEEcC
Q psy6079 31 EGPLYAVGG 39 (79)
Q Consensus 31 ~~~iyv~GG 39 (79)
++.+||+||
T Consensus 91 ~~~i~viGG 99 (162)
T 3dfr_A 91 DQELVIAGG 99 (162)
T ss_dssp SSCEEECCC
T ss_pred CCCEEEECC
Confidence 457999999
No 80
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=21.27 E-value=1.3e+02 Score=17.40 Aligned_cols=49 Identities=10% Similarity=0.009 Sum_probs=27.6
Q ss_pred ecCCCC--CeeecCCCccceeeeEEECCCCeEEEEcCCCCCCCCCeEEEEeCCCCc--EEe
Q psy6079 5 ICLHLV--FWFPLLLLSYMCLGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQ--WSF 61 (79)
Q Consensus 5 ~~~~~~--~W~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~ 61 (79)
+|+.+. .|+.-....+.....++. ++.+|+... ...++++|+.+.+ |..
T Consensus 292 ~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~------~g~l~~~d~~tG~~~~~~ 344 (376)
T 3q7m_A 292 LTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDS------EGYLHWINVEDGRFVAQQ 344 (376)
T ss_dssp EETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECT------TSEEEEEETTTCCEEEEE
T ss_pred EECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeC------CCeEEEEECCCCcEEEEE
Confidence 455554 466532212233344455 778887532 2468999988876 543
No 81
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=21.14 E-value=1.2e+02 Score=17.10 Aligned_cols=37 Identities=11% Similarity=-0.040 Sum_probs=22.6
Q ss_pred CCeEEEEcCCCCCCCCCeEEEEeCCCCcEEeccCCCCCCC
Q psy6079 31 EGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRS 70 (79)
Q Consensus 31 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~ 70 (79)
++++|+...... ...+..+|+.+.+...+...+..+.
T Consensus 82 dG~l~vad~~~~---~~~v~~~d~~~g~~~~~~~~~~~~~ 118 (306)
T 2p4o_A 82 NGDLVATGWNAD---SIPVVSLVKSDGTVETLLTLPDAIF 118 (306)
T ss_dssp TSCEEEEEECTT---SCEEEEEECTTSCEEEEEECTTCSC
T ss_pred CCcEEEEeccCC---cceEEEEcCCCCeEEEEEeCCCccc
Confidence 667888753211 1247788888888776655544443
No 82
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=20.79 E-value=1.2e+02 Score=16.97 Aligned_cols=25 Identities=20% Similarity=0.129 Sum_probs=18.5
Q ss_pred CCCeEEEEcCCCCCCCCCeEEEEeCCCCcEEe
Q psy6079 30 PEGPLYAVGGHDGWSYLNTTERFDPRLRQWSF 61 (79)
Q Consensus 30 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 61 (79)
.++++|+|-| +..++||..+++...
T Consensus 126 ~~gk~yfFkG-------~~yw~~d~~~~~~~~ 150 (225)
T 3oyo_A 126 KGKEVYLFKG-------NKYVRIAYDSKQLVG 150 (225)
T ss_dssp STTEEEEEET-------TEEEEEETTTTEEEE
T ss_pred CCCcEEEEeC-------CeEEEEECCCCeecC
Confidence 3789999976 567889877766543
No 83
>4fxk_C Complement C4 gamma chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_C*
Probab=20.60 E-value=1.1e+02 Score=18.13 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCCCCC-CCeEEEEeCCCCcEEec
Q psy6079 31 EGPLYAVGGHDGWSY-LNTTERFDPRLRQWSFI 62 (79)
Q Consensus 31 ~~~iyv~GG~~~~~~-~~~~~~yd~~~~~W~~~ 62 (79)
.++-|++-|.++... .+.-+.|-..+++|-..
T Consensus 226 ~gk~YLImG~~~~~~~~~~~~~Y~L~~~TwvE~ 258 (291)
T 4fxk_C 226 PGKEYLIMGLDGATYDLEGHPQYLLDSNSWIEE 258 (291)
T ss_dssp TTCEEEEECCCCSCBCTTSCBEEECCSSCEEEE
T ss_pred cCCEEEEeecCCCccccCCCEEEEcCCCcEEEE
Confidence 557788877655432 34456788999999765
No 84
>3rg9_A Bifunctional dihydrofolate reductase-thymidylate; oxidoreductase, oxidoreductase-oxidoreductase inhibitor complex; HET: NDP WRA; 2.00A {Trypanosoma brucei rhodesiense} PDB: 3qfx_A*
Probab=20.47 E-value=28 Score=20.04 Aligned_cols=8 Identities=25% Similarity=0.958 Sum_probs=6.9
Q ss_pred CeEEEEcC
Q psy6079 32 GPLYAVGG 39 (79)
Q Consensus 32 ~~iyv~GG 39 (79)
+.|||+||
T Consensus 155 ~~I~VIGG 162 (240)
T 3rg9_A 155 ETVFCIGG 162 (240)
T ss_dssp EEEEECCC
T ss_pred CeEEEECC
Confidence 46999999
Done!