RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6079
(79 letters)
>gnl|CDD|128874 smart00612, Kelch, Kelch domain.
Length = 47
Score = 64.5 bits (158), Expect = 4e-16
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 34 LYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLN 78
+Y VGG DG L + E +DP +W+ + M +PRS GVAV+N
Sbjct: 2 IYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVIN 46
>gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif. The kelch motif was initially
discovered in Kelch. In this protein there are six
copies of the motif. It has been shown that the
Drosophila ring canal kelch protein is related to
Galactose Oxidase, for which a structure has been
solved. The kelch motif forms a beta sheet. Several of
these sheets associate to form a beta propeller
structure as found in pfam00064, pfam00400 and
pfam00415.
Length = 46
Score = 49.2 bits (118), Expect = 6e-10
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 21 MCLGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPM 65
G GV+ G +Y +GG+DG L++ E +DP WS + M
Sbjct: 1 PRSGAGVVVLGGKIYVIGGYDGGQSLSSVEVYDPETNTWSKLPSM 45
>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional.
Length = 534
Score = 50.9 bits (122), Expect = 3e-09
Identities = 19/67 (28%), Positives = 27/67 (40%)
Query: 12 WFPLLLLSYMCLGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRST 71
W + L Y GV +Y +GG LNT E + P +W P++ PR
Sbjct: 323 WNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN 382
Query: 72 AGVAVLN 78
V +N
Sbjct: 383 PCVVNVN 389
Score = 34.0 bits (78), Expect = 0.003
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 31 EGPLYAVGG-HDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGV 74
+Y +GG L T E F +WS +P+ P S G
Sbjct: 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPL--PISHYGG 431
Score = 32.0 bits (73), Expect = 0.017
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 12 WFPLLLLSYMCLGVGVLEPEGPLYAVGGH---DGWSYLNTTERFDPRLRQWSFIAPMLSP 68
W L G + +G +Y +GG D N E ++P +W+ ++ + P
Sbjct: 418 WSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP 477
Query: 69 RSTAGVAVLN 78
R A + + N
Sbjct: 478 RINASLCIFN 487
Score = 28.2 bits (63), Expect = 0.38
Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 34 LYAVGGHDGWSY-LNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLN 78
+Y +GG + + +N+ +D + + W+ + ++ PR GV V N
Sbjct: 297 IYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFN 342
>gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif.
Length = 50
Score = 33.6 bits (77), Expect = 7e-04
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 34 LYAVGG-HDGWSYLNTTERFDPRLRQWSFIAPMLSPR 69
+Y GG +G N +DP W + P+ +PR
Sbjct: 14 IYVFGGYSNGSKASNKVLVYDPETGSWEKLPPLPTPR 50
>gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain.
Length = 48
Score = 31.5 bits (72), Expect = 0.004
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 34 LYAVGGHDGWS-YLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVL 77
+Y GG LN +D W + + PR+ V+
Sbjct: 4 IYVFGGLGDGGTRLNDLWVYDLDTNTWEKLGDLPGPRAGHAATVI 48
>gnl|CDD|177844 PLN02193, PLN02193, nitrile-specifier protein.
Length = 470
Score = 30.7 bits (69), Expect = 0.041
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 22 CLGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPML---SPRS 70
CLGV ++ LY GG D N FD +W + P+ +PRS
Sbjct: 219 CLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRS 270
>gnl|CDD|198372 cd07804, FGGY_XK_like_1, uncharacterized xylulose kinase-like
proteins; a subgroup of the FGGY family of carbohydrate
kinases. This subgroup is composed of uncharacterized
bacterial and archaeal xylulose kinases-like proteins
with similarity to bacterial D-xylulose kinases (XK,
also known as xylulokinase; EC 2.7.1.17), which catalyze
the rate-limiting step in the ATP-dependent
phosphorylation of D-xylulose to produce D-xylulose
5-phosphate (X5P) and ADP. The presence of Mg2+ or Mn2+
is required for catalytic activity. D-XK exists as a
dimer with an active site that lies at the interface
between the N- and C-terminal domains. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. Members of this subgroup belong to
the FGGY family of carbohydrate kinases.
Length = 492
Score = 28.3 bits (64), Expect = 0.33
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 23 LGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLS----PRSTAGVAV 76
LG GV+EP + +G + +FDPRL + P ST G A+
Sbjct: 244 LGAGVVEPGDAMEMLGTSGVIIVVTDRPKFDPRLISSPHVVPGTYLLNGGMSTGGAAL 301
>gnl|CDD|185721 cd08980, GH43_1, Glycosyl hydrolase family 43. This glycosyl
hydrolase family 43 (GH43) includes enzymes with
beta-xylosidase (EC 3.2.1.37) and
alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly
bifunctional xylosidase/arabinofuranosidase activities.
These are inverting enzymes (i.e. they invert the
stereochemistry of the anomeric carbon atom of the
substrate) that have an aspartate as the catalytic
general base, a glutamate as the catalytic general acid
and another aspartate that is responsible for pKa
modulation and orienting the catalytic acid. Many of the
enzymes in this family display both
alpha-L-arabinofuranosidase and beta-D-xylosidase
activity using aryl-glycosides as substrates. A common
structural feature of GH43 enzymes is a 5-bladed
beta-propeller domain that contains the catalytic acid
and catalytic base. A long V-shaped groove, partially
enclosed at one end, forms a single extended
substrate-binding surface across the face of the
propeller.
Length = 288
Score = 26.4 bits (59), Expect = 1.5
Identities = 16/51 (31%), Positives = 19/51 (37%), Gaps = 9/51 (17%)
Query: 27 VLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVL 77
V E G LY V WS Q +IA M +P + G VL
Sbjct: 118 VFEHNGQLYFV-----WS----GWEGRTNGNQNLYIAKMSNPWTLTGPRVL 159
>gnl|CDD|237844 PRK14873, PRK14873, primosome assembly protein PriA; Provisional.
Length = 665
Score = 25.7 bits (57), Expect = 2.6
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 41 DGWSYLNTTERFDPR-----LRQWSFIAPMLSPRSTAGVAVL 77
D W+ L R D R LR+W A ++ PR+ G V+
Sbjct: 496 DAWALLG---RQDLRAAEDTLRRWMAAAALVRPRADGGQVVV 534
>gnl|CDD|215560 PLN03076, PLN03076, ARF guanine nucleotide exchange factor (ARF-GEF);
Provisional.
Length = 1780
Score = 25.9 bits (57), Expect = 2.7
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 8 HLVFWFPLL 16
HL FWFPLL
Sbjct: 1341 HLYFWFPLL 1349
>gnl|CDD|235700 PRK06112, PRK06112, acetolactate synthase catalytic subunit;
Validated.
Length = 578
Score = 25.5 bits (56), Expect = 3.1
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Query: 21 MCLGVGVLEPEGPLYAVGGHDG----WSYLNTTER 51
M +G V P P+ + G G W+ L T R
Sbjct: 445 MAIGAKVARPGAPVICLVGDGGFAHVWAELETARR 479
>gnl|CDD|177814 PLN02153, PLN02153, epithiospecifier protein.
Length = 341
Score = 24.9 bits (54), Expect = 5.7
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 22 CLGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPM 65
CLGV ++ LY GG D + +D +W+F+ +
Sbjct: 76 CLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKL 119
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.141 0.473
Gapped
Lambda K H
0.267 0.0802 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,081,809
Number of extensions: 319938
Number of successful extensions: 433
Number of sequences better than 10.0: 1
Number of HSP's gapped: 433
Number of HSP's successfully gapped: 22
Length of query: 79
Length of database: 10,937,602
Length adjustment: 48
Effective length of query: 31
Effective length of database: 8,808,610
Effective search space: 273066910
Effective search space used: 273066910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.1 bits)