RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6079
(79 letters)
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo
sapiens}
Length = 302
Score = 86.6 bits (215), Expect = 2e-22
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 22 CLGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLN 78
LG VL G LYAVGG DG + L++ E ++ + +W +APM + RS+ GV V+
Sbjct: 101 TLGAAVLN--GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVG 155
Score = 77.7 bits (192), Expect = 4e-19
Identities = 25/57 (43%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 22 CLGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLN 78
GVGVL LYAVGGHDG + E +DP W +A M R AGV +N
Sbjct: 197 GAGVGVLN--NLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVN 251
Score = 73.1 bits (180), Expect = 2e-17
Identities = 24/67 (35%), Positives = 35/67 (52%)
Query: 12 WFPLLLLSYMCLGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRST 71
W + L G++ G ++AVGG +G + T + +DP QW+ +A M RST
Sbjct: 42 WHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRST 101
Query: 72 AGVAVLN 78
G AVLN
Sbjct: 102 LGAAVLN 108
Score = 73.1 bits (180), Expect = 2e-17
Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 4/59 (6%)
Query: 22 CLGVGVLEPEGPLYAVGGHDGWS--YLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLN 78
+GVGV+ G LYAVGG+D S L+T E ++ +W++IA M + RS AGV VLN
Sbjct: 148 SVGVGVVG--GLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLN 204
Score = 63.4 bits (155), Expect = 6e-14
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 21 MCLGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAP-MLSPRSTAGVAVLN 78
GV + G LY VGG DG L + E ++P +W+ ++ M + RS AGV V++
Sbjct: 243 RNAGVCAVN--GLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVID 299
Score = 58.1 bits (141), Expect = 5e-12
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 34 LYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLN 78
L V G + + E +D + +W +A + S R AG+ +
Sbjct: 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMA 61
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway,
protein-binding, UBI degradation, UBL conjugation
pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Length = 301
Score = 84.6 bits (210), Expect = 8e-22
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 21 MCLGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLN 78
G L +Y GG DG + ER+DP + QWS + M + R AG+ V +
Sbjct: 104 GLAGATTLG--DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVAS 159
Score = 79.3 bits (196), Expect = 8e-20
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 22 CLGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLN 78
G+ V G +Y +GG+DG + LN+ E++DP W+ + PM + RS AGVA+LN
Sbjct: 152 GAGLVVAS--GVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLN 206
Score = 76.9 bits (190), Expect = 5e-19
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 22 CLGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLN 78
GV +L +Y VGG DG ++L++ E ++ R W+ + M +PR G VL
Sbjct: 199 GAGVALLN--DHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLR 253
Score = 70.4 bits (173), Expect = 2e-16
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 21 MCLGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLN 78
+G VL G LYA+ G+DG S L++ E +DP + W + M + R AGV VL
Sbjct: 245 CYVGATVLR--GRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMGTQRCDAGVCVLR 300
Score = 66.2 bits (162), Expect = 7e-15
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 12 WFPLLLLSYMCLGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQ---WSFIAPMLSP 68
W L ++ V + +Y +GG+DG S L++ E D + W +APM
Sbjct: 43 WSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVR 102
Query: 69 RSTAGVAVLN 78
R AG L
Sbjct: 103 RGLAGATTLG 112
Score = 58.1 bits (141), Expect = 6e-12
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 28 LEPEGPLYAVGGHDG-WSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLN 78
L L VGG S ++ E++DP+ ++WSF+ + R L+
Sbjct: 11 LGANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLH 62
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat
motif, protein binding; HET: MSE; 1.35A {Homo sapiens}
SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A
2z32_A 3ade_A
Length = 308
Score = 83.5 bits (207), Expect = 2e-21
Identities = 27/57 (47%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 22 CLGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLN 78
+GVGV++ G +YAVGG G + N+ ER++P +W +APML+ R GVAVLN
Sbjct: 114 RIGVGVID--GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLN 168
Score = 77.0 bits (190), Expect = 5e-19
Identities = 26/57 (45%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 22 CLGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLN 78
+GV VL LYAVGG DG + LN+ E + P +W I M + RS AGV VL+
Sbjct: 161 GVGVAVLN--RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLH 215
Score = 75.4 bits (186), Expect = 2e-18
Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 22 CLGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLN 78
GV VL +YA GG+DG LN+ ER+D W+F+APM RS G+ V
Sbjct: 208 GAGVCVLH--NCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQ 262
Score = 66.2 bits (162), Expect = 6e-15
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 12 WFPLLLLSYMCLGVGVLEPEGPLYAVGGH----DGWSYLNTTERFDPRLRQWSFIAPMLS 67
W L L G+ G LYAVGG DG + + + ++P QWS APM
Sbjct: 51 WLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSV 110
Query: 68 PRSTAGVAVLN 78
PR+ GV V++
Sbjct: 111 PRNRIGVGVID 121
Score = 65.8 bits (161), Expect = 9e-15
Identities = 21/53 (39%), Positives = 33/53 (62%)
Query: 24 GVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAV 76
+G+ +G +Y +GG+DG ++L++ E +DP WS + M S RS GVAV
Sbjct: 255 ALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVAV 307
Score = 57.7 bits (140), Expect = 7e-12
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 34 LYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLN 78
+Y GG+ L+ E ++P W +A + PRS V+
Sbjct: 27 IYTAGGYFR-QSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVG 70
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural
genomics, structur genomics consortium, SGC, kelch
repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Length = 306
Score = 78.1 bits (193), Expect = 2e-19
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 22 CLGVGVLEPEGPLYAVGGHD-GWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLN 78
L E G +Y GG + G S L E +D R W ML+ R + G+ N
Sbjct: 94 SLAACAAE--GKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEAN 149
Score = 75.4 bits (186), Expect = 2e-18
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 22 CLGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLN 78
G+ ++ ++AVGG +G L+ E +D +L +W ++PM T A +
Sbjct: 193 NHGLVFVK--DKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVG 247
Score = 72.0 bits (177), Expect = 5e-17
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 21 MCLGVGVLEPEGPLYAVGGHDGWS----YLNTTERFDPRLRQWSFIAPMLSPRSTAGVAV 76
G+ G +Y GG G + LN+ E +DP W+ + PM+ R G+
Sbjct: 141 CSHGMVEAN--GLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVF 198
Query: 77 LN 78
+
Sbjct: 199 VK 200
Score = 68.1 bits (167), Expect = 1e-15
Identities = 7/67 (10%), Positives = 18/67 (26%), Gaps = 1/67 (1%)
Query: 12 WFPLLLLSYMCLGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRST 71
W + + + +Y +GG + + ++ W +PR +
Sbjct: 36 WTDIRCPFEKRRDAACVFWDNVVYILGGSQL-FPIKRMDCYNVVKDSWYSKLGPPTPRDS 94
Query: 72 AGVAVLN 78
Sbjct: 95 LAACAAE 101
Score = 63.1 bits (154), Expect = 8e-14
Identities = 6/60 (10%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 21 MCLGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPR-STAGVAVLNS 79
+ + + +Y + G G L ++ +W + + + ++ + V+++
Sbjct: 239 VTVKCAAVG--SIVYVLAGFQGVGRLGHILEYNTETDKWVANSKVRAFPVTSCLICVVDT 296
Score = 53.5 bits (129), Expect = 3e-10
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 4/48 (8%)
Query: 31 EGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLN 78
+ + GG S + F+P+ W+ I R A +
Sbjct: 12 DYRIALFGG----SQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWD 55
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding,
invasion and metastasis, UBL conjugation pathway, UBL
protein folding; 2.00A {Rattus norvegicus}
Length = 318
Score = 78.2 bits (193), Expect = 2e-19
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 21 MCLGVGVLEPEGPLYAVGGH-DGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLN 78
V G +Y +GG D N ++P+ W +APM +PRS GVA+
Sbjct: 150 YGHNVISHN--GMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHK 206
Score = 77.0 bits (190), Expect = 6e-19
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 22 CLGVGVLEPEGPLYAVGGHD--GWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLN 78
G+G ++ +Y V G D + L++ +DP +WS + + V N
Sbjct: 102 LFGLGEVD--DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHN 158
Score = 75.1 bits (185), Expect = 4e-18
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 22 CLGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLN 78
GV + + G + GG + E FD + +W + RS+ + L
Sbjct: 199 MFGVAIHK--GKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLA 253
Score = 62.0 bits (151), Expect = 2e-13
Identities = 11/73 (15%), Positives = 24/73 (32%), Gaps = 6/73 (8%)
Query: 12 WFPLLLLSYMCLGVGVLEPEGPLYAVGGHDG------WSYLNTTERFDPRLRQWSFIAPM 65
+ L ++ + +Y VGG + + D +W + P+
Sbjct: 37 YLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPL 96
Query: 66 LSPRSTAGVAVLN 78
S R G+ ++
Sbjct: 97 PSARCLFGLGEVD 109
Score = 55.0 bits (133), Expect = 6e-11
Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 13/67 (19%)
Query: 21 MCLGVGVLEPEGPLYAVGGHDG---------WSYLNTTERFDPRLRQWSFIAPMLSPRST 71
+ + L G LYA+GG + +N +++ ++W+ + R
Sbjct: 245 SSISLVSLA--GSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGMLKE--IRYA 300
Query: 72 AGVAVLN 78
+G + L
Sbjct: 301 SGASCLA 307
Score = 43.1 bits (102), Expect = 1e-06
Identities = 6/49 (12%), Positives = 13/49 (26%), Gaps = 8/49 (16%)
Query: 31 EGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIA-PMLSPRSTAGVAVLN 78
+ + V +DP + A PR+ + +
Sbjct: 15 KDLILLVND-------TAAVAYDPMENECYLTALAEQIPRNHSSIVTQQ 56
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding,
cytoskeleton; 1.78A {Homo sapiens}
Length = 315
Score = 76.3 bits (188), Expect = 1e-18
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 21 MCLGVGVLEPEGPLYAVGGH-DGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLN 78
V +Y +GG LN +DP+ +W +APM + RS G V +
Sbjct: 140 YGHTVLSHM--DLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHD 196
Score = 74.7 bits (184), Expect = 5e-18
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 5/59 (8%)
Query: 23 LGVGVLEPEGPLYAVGGH---DGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLN 78
G+G +Y VGG DG L++ +D +W P+ V
Sbjct: 92 FGLGEAL--NSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHM 148
Score = 73.9 bits (182), Expect = 1e-17
Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 2/57 (3%)
Query: 22 CLGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLN 78
G V + G + G ++ E + +W+ RS+ + L
Sbjct: 189 LFGATVHD--GRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLV 243
Score = 61.2 bits (149), Expect = 4e-13
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 6/73 (8%)
Query: 12 WFPLLLLSYMCLGVGVLEPEGPLYAVGGHDGWSYLNTT------ERFDPRLRQWSFIAPM 65
+ L V ++ E ++ GG +FD +W + P+
Sbjct: 26 YCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL 85
Query: 66 LSPRSTAGVAVLN 78
SPR G+
Sbjct: 86 PSPRCLFGLGEAL 98
Score = 54.3 bits (131), Expect = 1e-10
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 13/67 (19%)
Query: 21 MCLGVGVLEPEGPLYAVGGHDGW---------SYLNTTERFDPRLRQWSFIAPMLSPRST 71
L + L G LYA+GG + LN R++ ++W +
Sbjct: 235 SSLSLVSLV--GTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVLRE--IAYA 290
Query: 72 AGVAVLN 78
AG L
Sbjct: 291 AGATFLP 297
Score = 42.4 bits (100), Expect = 2e-06
Identities = 3/49 (6%), Positives = 12/49 (24%), Gaps = 8/49 (16%)
Query: 31 EGPLYAVGGHDGWSYLNTTERFDPRLRQWSFI-APMLSPRSTAGVAVLN 78
+ ++ + +DP + P++ +
Sbjct: 4 QDLIFMISE-------EGAVAYDPAANECYCASLSSQVPKNHVSLVTKE 45
Score = 24.3 bits (53), Expect = 4.8
Identities = 6/35 (17%), Positives = 8/35 (22%), Gaps = 2/35 (5%)
Query: 12 WFPLLLLSYMCLGVGVLEPEGPLYAVGGHDGWSYL 46
W +L G L L + L
Sbjct: 280 WEGVLREIAYAAGATFLP--VRLNVLRLTKMAENL 312
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid
metabolism, kelch repeat, beta-propeller; HET: MSE;
1.50A {Escherichia coli}
Length = 357
Score = 49.9 bits (119), Expect = 4e-09
Identities = 7/53 (13%), Positives = 14/53 (26%)
Query: 24 GVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAV 76
G G Y GG + + E + + + I + +
Sbjct: 111 GHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAED 163
Score = 46.5 bits (110), Expect = 7e-08
Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 6/55 (10%)
Query: 31 EGPLYAVGGHD-----GWSYLNTTERFDPRLRQWSFIAPML-SPRSTAGVAVLNS 79
+G LY GG N +++P+ W + + V N
Sbjct: 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNG 119
Score = 39.9 bits (93), Expect = 2e-05
Identities = 6/39 (15%), Positives = 12/39 (30%)
Query: 40 HDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLN 78
H+G +T+ +W + R+ N
Sbjct: 278 HEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWN 316
Score = 35.7 bits (82), Expect = 5e-04
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 7/48 (14%)
Query: 34 LYAVGGHDGWSYLNTTERFD--PRLRQWSFIAPM-LSPRSTAGVAVLN 78
+Y G G + D + ++W+ +A PR A A ++
Sbjct: 22 VYIGLGSAG----TAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFID 65
Score = 33.8 bits (77), Expect = 0.002
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 3/56 (5%)
Query: 24 GVGVLEPEGPLYAVGGHDGW-SYLNTTERF--DPRLRQWSFIAPMLSPRSTAGVAV 76
G V+ + + G + +W+ +AP+ SP AG
Sbjct: 193 GAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFA 248
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A
{Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Length = 695
Score = 37.8 bits (87), Expect = 9e-05
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 27 VLEPEGPLYAVGGHDG-WSYLNTTERFDPRLRQWSFIAPMLSPRS 70
+ L +GG L+ FD + R+WS I + R
Sbjct: 447 TISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRF 491
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence
form, precursor of copper enzyme., oxidoreductase; 1.40A
{Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB:
1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A
2eib_A 1t2x_A 2eid_A 2wq8_A
Length = 656
Score = 36.9 bits (84), Expect = 2e-04
Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 6/59 (10%)
Query: 24 GVGVLEPEGPLYAVGGH------DGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAV 76
V+ P+G + GG + + + T E + P + P R +++
Sbjct: 459 HTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISL 517
Score = 34.9 bits (79), Expect = 0.001
Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 26 GVLEPEGPLYAVGGH-DGWSYLNTTERFDPRLRQWSFIAPMLSPR 69
+G ++ +GG G + E + P + W+ +
Sbjct: 292 SATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNP 336
Score = 31.9 bits (71), Expect = 0.013
Identities = 12/78 (15%), Positives = 22/78 (28%), Gaps = 5/78 (6%)
Query: 1 MQSSICLHLVFWFPLLLLSYMCLGVG-VLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQW 59
+V + + + G ++ G + GG+D T +D W
Sbjct: 222 SSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA----KKTSLYDSSSDSW 277
Query: 60 SFIAPMLSPRSTAGVAVL 77
M R A +
Sbjct: 278 IPGPDMQVARGYQSSATM 295
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.7 bits (55), Expect = 1.8
Identities = 6/28 (21%), Positives = 13/28 (46%), Gaps = 5/28 (17%)
Query: 47 NTTERFDPRLRQW---SFIAPMLSPRST 71
++ L+ + S AP L+ ++T
Sbjct: 20 QALKKLQASLKLYADDS--APALAIKAT 45
>2vc7_A Aryldialkylphosphatase; phosphotriesterase, promiscuous activities,
enzyme evolution, hyperthermophilic, lactonase,
hydrolase; HET: KCX GOL HT5; 2.05A {Sulfolobus
solfataricus} PDB: 2vc5_A*
Length = 314
Score = 25.0 bits (54), Expect = 3.2
Identities = 8/43 (18%), Positives = 14/43 (32%)
Query: 16 LLLSYMCLGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQ 58
+++S+ P Y WS E P L++
Sbjct: 251 IMISHDYCCTIDWGTAKPEYKPKLAPRWSITLIFEDTIPFLKR 293
>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase,
metal-binding, tRNA processing, zinc-binding,
catabolism; 1.70A {Homo sapiens}
Length = 368
Score = 24.5 bits (53), Expect = 5.2
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 6/53 (11%)
Query: 5 ICL-HL----VFWFPLLLLSYMCLGVGVLEPEGPLYAVGGHDGWSYLNTTERF 52
I + HL F P LL + + L G + + P+ G ++ T
Sbjct: 56 IFITHLHGDHFFGLPGLLCT-ISLQSGSMVSKQPIEIYGPVGLRDFIWRTMEL 107
>1atl_A Atrolysin C; metalloendopeptidase, hydrolase-hydrolase inhibitor
complex; HET: 0QI; 1.80A {Crotalus atrox} SCOP: d.92.1.9
PDB: 1htd_A 1dth_A* 3aig_A* 2aig_P* 4aig_A* 1iag_A
Length = 202
Score = 23.8 bits (52), Expect = 7.9
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 40 HDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLNS 79
HD + L T D + + M P+ + G+ +S
Sbjct: 92 HD-NAQLLTAIELDEETLGLAPLGTMCDPKLSIGIVQDHS 130
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.141 0.473
Gapped
Lambda K H
0.267 0.0698 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,219,184
Number of extensions: 59045
Number of successful extensions: 176
Number of sequences better than 10.0: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 54
Length of query: 79
Length of database: 6,701,793
Length adjustment: 48
Effective length of query: 31
Effective length of database: 5,361,585
Effective search space: 166209135
Effective search space used: 166209135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.5 bits)