RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6079
(79 letters)
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1,
KEAP1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 288
Score = 55.7 bits (132), Expect = 1e-11
Identities = 21/53 (39%), Positives = 33/53 (62%)
Query: 24 GVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAV 76
+G+ +G +Y +GG+DG ++L++ E +DP WS + M S RS GVAV
Sbjct: 235 ALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVAV 287
Score = 44.9 bits (104), Expect = 1e-07
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 34 LYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLNS 79
+Y GG+ L+ E ++P W +A + PRS V+
Sbjct: 7 IYTAGGYF-RQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGG 51
Score = 27.6 bits (59), Expect = 0.15
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 34 LYAVGGHDGWSYLNTTERFDPRLRQWSFIAPMLSPRSTAGVAVLN 78
+YA GG+DG LN+ ER+D W+F+APM RS G+ V
Sbjct: 198 IYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQ 242
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain
{Fungi (Fusarium sp.) [TaxId: 29916]}
Length = 387
Score = 42.1 bits (97), Expect = 9e-07
Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 6/73 (8%)
Query: 11 FWFPLLLLSYMCLGVGVLEPEGPLYAVGGH------DGWSYLNTTERFDPRLRQWSFIAP 64
+ L V+ P+G + GG + + + T E + P + P
Sbjct: 279 VFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNP 338
Query: 65 MLSPRSTAGVAVL 77
R +++L
Sbjct: 339 NSIVRVYHSISLL 351
Score = 39.0 bits (89), Expect = 1e-05
Identities = 8/71 (11%), Positives = 17/71 (23%), Gaps = 6/71 (8%)
Query: 12 WFPLLLLSYMCLGVGVLEPEGPLYAVGG------HDGWSYLNTTERFDPRLRQWSFIAPM 65
W P + L + + G + + T +DP S
Sbjct: 11 WGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT 70
Query: 66 LSPRSTAGVAV 76
++ +
Sbjct: 71 VTKHDMFCPGI 81
>d2fz5a1 c.23.5.1 (A:1-137) Flavodoxin {Megasphaera elsdenii [TaxId:
907]}
Length = 137
Score = 25.1 bits (54), Expect = 1.0
Identities = 12/82 (14%), Positives = 22/82 (26%), Gaps = 16/82 (19%)
Query: 1 MQSSICLHLVFWFPLLLLSYMCLGVGVLEP--------------EGPLYAVGGHDGWSYL 46
+ V ++LL +G LE +G + G GW
Sbjct: 35 RFEDTNVDDVASKDVILLGCPAMGSEELEDSVVEPFFTDLAPKLKGKKVGLFGSYGWGSG 94
Query: 47 NTTERFDPRLRQ--WSFIAPML 66
+ + R + I +
Sbjct: 95 EWMDAWKQRTEDTGATVIGTAI 116
>d1g40a1 g.18.1.1 (A:1-64) Complement control protein {Vaccinia
virus [TaxId: 10245]}
Length = 64
Score = 23.5 bits (50), Expect = 1.7
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 18 LSYMCLGVGVLEPEGPLYAVGGHDGWSYLN 47
+ Y+CL + GP+YA GW+ N
Sbjct: 31 IEYLCLPGYRKQKMGPIYAKCTGTGWTLFN 60
>d1oaoa_ e.26.1.2 (A:) Bifunctional carbon monoxide
dehydrogenase/acetyl-CoA synthase (CODH/ACS) beta (CODH)
subunit {Moorella thermoacetica [TaxId: 1525]}
Length = 673
Score = 24.4 bits (53), Expect = 1.8
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 23 LGVGVLEPEGPLYAVGGHDGW 43
+GVL+P+ + + GH+
Sbjct: 265 ANMGVLDPDQVNFVLHGHNPL 285
>d2oqea1 b.30.2.1 (A:237-672) Copper amine oxidase, domain 3
{Yeast (Hansenula polymorpha) [TaxId: 4905]}
Length = 436
Score = 24.1 bits (52), Expect = 2.2
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 7/33 (21%)
Query: 27 VLEPEGPLYAVGGH----DGWSYLNTTERFDPR 55
V +PEG + + G+ + + F+ R
Sbjct: 8 VTQPEGVSFKMTGNVMEWSNFKF---HIGFNYR 37
>d1d6za1 b.30.2.1 (A:301-724) Copper amine oxidase, domain 3
{Escherichia coli [TaxId: 562]}
Length = 424
Score = 23.7 bits (51), Expect = 2.6
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 7/33 (21%)
Query: 27 VLEPEGPLYAVGGH----DGWSYLNTTERFDPR 55
++EPEG Y + G W + + R
Sbjct: 8 IIEPEGKNYTITGDMIHWRNWDF---HLSMNSR 37
>d1w2za1 b.30.2.1 (A:207-647) Copper amine oxidase, domain 3 {Pea
seedling (Pisum sativum) [TaxId: 3888]}
Length = 441
Score = 23.8 bits (51), Expect = 2.7
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 7/33 (21%)
Query: 27 VLEPEGPLYAVGGH----DGWSYLNTTERFDPR 55
+P+GP + + GH W + FD R
Sbjct: 17 SHQPQGPGFQINGHSVSWANWKF---HIGFDVR 46
>d1su7a_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase
{Carboxydothermus hydrogenoformans [TaxId: 129958]}
Length = 633
Score = 23.6 bits (51), Expect = 3.3
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 23 LGVGVLEPEGPLYAVGGHD 41
+GVL+ + AV GH+
Sbjct: 241 SNLGVLKADAVNVAVHGHN 259
>d1w7ca1 b.30.2.1 (A:316-775) Lysyl oxidase PplO, domain 3 {Yeast
(Pichia pastoris) [TaxId: 4922]}
Length = 460
Score = 23.0 bits (49), Expect = 5.6
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 9/35 (25%)
Query: 27 VLEPEGPLYAVGGHD------GWSYLNTTERFDPR 55
++EPEG +A G + W + +
Sbjct: 10 LVEPEGRRWAYDGDEEYFSWMDWGF---YTSWSRD 41
>d1jqka_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase
{Rhodospirillum rubrum [TaxId: 1085]}
Length = 610
Score = 22.9 bits (49), Expect = 6.2
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 23 LGVGVLEPEGPLYAVGGHDGW 43
+GV++ AV GH+
Sbjct: 221 ANLGVMKRGAVNIAVNGHNPM 241
>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase,
INMT {Human (Homo sapiens) [TaxId: 9606]}
Length = 257
Score = 22.7 bits (47), Expect = 7.8
Identities = 8/65 (12%), Positives = 19/65 (29%)
Query: 3 SSICLHLVFWFPLLLLSYMCLGVGVLEPEGPLYAVGGHDGWSYLNTTERFDPRLRQWSFI 62
+ + + + +C +L+P G L SY+ F + +
Sbjct: 158 TLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEV 217
Query: 63 APMLS 67
+
Sbjct: 218 EQAVL 222
>d1c8da_ b.121.5.2 (A:) Parvovirus (panleukopenia virus) capsid
protein {Canine parvovirus [TaxId: 10788]}
Length = 548
Score = 22.6 bits (48), Expect = 7.9
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 32 GPLYAVGGHDGWSYLNTTERFDPRLRQW 59
P +GG G +Y N + P
Sbjct: 395 LPTDPIGGKTGINYTNIFNTYGPLTALN 422
>d2cbpa_ b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativus)
[TaxId: 3659]}
Length = 96
Score = 22.1 bits (47), Expect = 9.5
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 35 YAVGGHDGWSY 45
Y VGG GW++
Sbjct: 3 YVVGGSGGWTF 13
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.141 0.473
Gapped
Lambda K H
0.267 0.0595 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 301,629
Number of extensions: 11276
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 19
Length of query: 79
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 34
Effective length of database: 1,789,746
Effective search space: 60851364
Effective search space used: 60851364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.2 bits)