Query psy6080
Match_columns 240
No_of_seqs 176 out of 914
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 17:08:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6080.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6080hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3422|consensus 100.0 3.5E-63 7.6E-68 431.8 15.0 200 17-236 21-221 (221)
2 CHL00044 rpl16 ribosomal prote 100.0 3E-47 6.6E-52 314.3 14.9 133 52-189 3-135 (135)
3 PRK09203 rplP 50S ribosomal pr 100.0 6.2E-46 1.3E-50 307.4 14.6 132 52-188 3-134 (138)
4 TIGR01164 rplP_bact ribosomal 100.0 1.6E-44 3.6E-49 294.8 13.3 125 52-181 2-126 (126)
5 PF00252 Ribosomal_L16: Riboso 100.0 1E-44 2.2E-49 297.7 9.8 132 53-187 1-133 (133)
6 COG0197 RplP Ribosomal protein 100.0 2.3E-42 5.1E-47 287.9 13.1 135 52-191 4-140 (146)
7 cd01433 Ribosomal_L16_L10e Rib 100.0 7.9E-39 1.7E-43 255.3 12.2 111 75-186 2-112 (112)
8 PRK04199 rpl10e 50S ribosomal 100.0 9E-38 2E-42 266.7 12.9 147 30-189 7-166 (172)
9 TIGR00279 L10e ribosomal prote 100.0 8.9E-38 1.9E-42 266.7 12.8 146 31-189 8-166 (172)
10 PTZ00173 60S ribosomal protein 100.0 2.9E-34 6.2E-39 251.5 13.9 151 30-190 7-170 (213)
11 KOG0857|consensus 98.3 5.7E-07 1.2E-11 79.4 4.5 105 84-188 51-169 (212)
12 PRK14445 acylphosphatase; Prov 48.4 61 0.0013 24.8 5.7 44 142-188 31-74 (91)
13 PF08002 DUF1697: Protein of u 47.5 25 0.00053 29.0 3.6 59 145-213 35-95 (137)
14 PF13533 Biotin_lipoyl_2: Biot 47.2 24 0.00052 24.0 2.9 13 149-161 23-35 (50)
15 PRK14426 acylphosphatase; Prov 40.6 1.1E+02 0.0024 23.4 6.0 42 143-186 32-73 (92)
16 PRK14429 acylphosphatase; Prov 38.9 1.1E+02 0.0023 23.4 5.7 42 143-187 30-71 (90)
17 PRK14435 acylphosphatase; Prov 37.6 1.2E+02 0.0025 23.3 5.7 43 143-188 30-72 (90)
18 PRK14451 acylphosphatase; Prov 37.3 1.3E+02 0.0028 23.0 5.9 42 143-187 31-72 (89)
19 PF00708 Acylphosphatase: Acyl 37.1 84 0.0018 23.6 4.8 42 143-187 32-73 (91)
20 PRK14441 acylphosphatase; Prov 35.4 1.3E+02 0.0027 23.2 5.6 44 142-188 32-75 (93)
21 PRK14420 acylphosphatase; Prov 35.4 1.3E+02 0.0027 22.9 5.6 42 143-187 30-71 (91)
22 PRK14440 acylphosphatase; Prov 34.7 1.4E+02 0.0031 22.8 5.8 42 143-187 31-72 (90)
23 PRK14444 acylphosphatase; Prov 34.1 1.5E+02 0.0032 22.8 5.8 42 143-187 32-73 (92)
24 PRK14425 acylphosphatase; Prov 33.7 1.4E+02 0.0031 23.0 5.7 44 143-189 34-77 (94)
25 PRK14436 acylphosphatase; Prov 32.8 1.6E+02 0.0035 22.5 5.9 43 143-188 32-74 (91)
26 PRK14421 acylphosphatase; Prov 32.8 1.3E+02 0.0029 23.6 5.5 43 143-188 32-74 (99)
27 PRK14433 acylphosphatase; Prov 32.7 1.3E+02 0.0028 22.9 5.2 42 143-187 29-70 (87)
28 PRK05783 hypothetical protein; 32.5 47 0.001 25.7 2.8 32 147-179 35-67 (84)
29 PRK14443 acylphosphatase; Prov 31.8 1.8E+02 0.0039 22.6 6.0 44 142-187 31-74 (93)
30 PRK14442 acylphosphatase; Prov 30.6 1.9E+02 0.0041 22.2 5.9 44 143-189 32-75 (91)
31 PF07831 PYNP_C: Pyrimidine nu 30.3 74 0.0016 23.7 3.5 25 149-173 43-69 (75)
32 PRK14449 acylphosphatase; Prov 30.2 1.9E+02 0.0041 22.0 5.8 42 143-187 31-72 (90)
33 PRK14446 acylphosphatase; Prov 29.5 2E+02 0.0044 22.0 5.9 43 143-188 30-72 (88)
34 PRK14432 acylphosphatase; Prov 29.2 2.1E+02 0.0045 22.1 5.9 43 143-188 30-73 (93)
35 PRK14424 acylphosphatase; Prov 28.3 2E+02 0.0044 22.3 5.8 43 143-188 35-77 (94)
36 PF13133 DUF3949: Protein of u 28.0 28 0.00061 25.7 0.8 27 186-212 21-49 (62)
37 cd07028 RNAP_RPB3_like RPB3 su 27.4 59 0.0013 28.9 2.9 85 82-176 95-203 (212)
38 PRK14430 acylphosphatase; Prov 27.4 2.3E+02 0.0049 21.8 5.9 44 143-189 32-75 (92)
39 PRK14427 acylphosphatase; Prov 27.4 2E+02 0.0043 22.2 5.6 43 143-188 34-76 (94)
40 PRK14452 acylphosphatase; Prov 27.2 1.8E+02 0.0039 23.3 5.4 44 143-189 48-91 (107)
41 PRK14423 acylphosphatase; Prov 27.1 2.2E+02 0.0048 21.8 5.7 42 143-187 33-74 (92)
42 TIGR03260 met_CoM_red_D methyl 26.5 81 0.0018 27.1 3.4 78 98-186 12-104 (150)
43 PRK14428 acylphosphatase; Prov 26.1 2.2E+02 0.0048 22.3 5.6 42 143-187 36-77 (97)
44 PF00595 PDZ: PDZ domain (Also 25.9 52 0.0011 23.5 1.9 29 150-178 43-75 (81)
45 PRK14448 acylphosphatase; Prov 25.9 2.6E+02 0.0057 21.3 5.9 42 143-187 30-71 (90)
46 PRK14450 acylphosphatase; Prov 25.8 2.5E+02 0.0055 21.3 5.8 44 142-188 29-73 (91)
47 PRK09783 copper/silver efflux 25.4 1.9E+02 0.0041 27.8 6.2 21 149-170 145-165 (409)
48 PRK14422 acylphosphatase; Prov 25.0 2.6E+02 0.0055 21.5 5.8 43 143-188 34-76 (93)
49 PF02505 MCR_D: Methyl-coenzym 24.9 87 0.0019 27.0 3.3 78 99-186 14-106 (153)
50 PRK14437 acylphosphatase; Prov 23.8 2.7E+02 0.0058 22.3 5.8 44 143-189 51-94 (109)
51 PRK14438 acylphosphatase; Prov 23.0 2.7E+02 0.0058 21.2 5.5 43 143-188 31-73 (91)
52 PRK14434 acylphosphatase; Prov 21.7 3.8E+02 0.0082 20.6 6.2 46 141-187 29-74 (92)
53 cd00992 PDZ_signaling PDZ doma 20.6 1.4E+02 0.0031 20.7 3.3 30 148-177 42-75 (82)
54 COG2266 GTP:adenosylcobinamide 20.3 68 0.0015 28.2 1.9 33 131-176 9-41 (177)
55 PRK14439 acylphosphatase; Prov 20.3 3.4E+02 0.0074 23.6 6.1 43 143-187 103-145 (163)
No 1
>KOG3422|consensus
Probab=100.00 E-value=3.5e-63 Score=431.79 Aligned_cols=200 Identities=37% Similarity=0.599 Sum_probs=190.8
Q ss_pred ccccccccccCCCCCCCCccCcCCCCCccCCCCCCCCCCCCCccccCCCCcc-cCcccCccEEEEEeEEEEEeeCcccch
Q psy6080 17 IVCTAGLKNIKKPPNYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLL-RGPEEIHNYLIHKQYGLVALSGGRMNY 95 (240)
Q Consensus 17 ~~~~~g~k~~~~~~~y~~~~~p~~~kl~~~~~~P~~pk~~K~~K~~K~l~~~-rG~~~~~~~L~~G~yGL~ale~G~It~ 95 (240)
...++|++.|-|++.|.|+. .|+++|++|.||+ ++ +|+|.+||+|.||+|||+++++|+|++
T Consensus 21 ~~~~g~~k~~~p~~~f~d~~---------------~P~r~k~rk~~rg--r~~rG~s~~gt~L~~g~Ygl~a~~~g~l~~ 83 (221)
T KOG3422|consen 21 FPPNGGLKLFMPAERFGDVY---------------APERTKYRKIQRG--RVPRGGSERGTELIFGRYGLRAKSGGILDS 83 (221)
T ss_pred ccCCCccceeeccccccccc---------------cccchhhhHhhcc--ccccCCccccceeeechhhheeccCceeeH
Confidence 44678999999999999999 5666777777776 55 899999999999999999999999999
Q ss_pred hhHHHHHHHHhcccccccceEEEEEcCCCCceecCCCcccCCCCCCcceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHc
Q psy6080 96 RHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKKGLGSRMGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSC 175 (240)
Q Consensus 96 ~qlEaaR~~InR~L~kkk~~~iwirv~P~~pvTkK~~gtRMGkGKG~i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~a 175 (240)
.|+|++|.++.++++..++|++|+|++||.|||.|++|+|||+|||+||||||||++|+||||++|++++++|++||.+|
T Consensus 84 ~~~e~~r~~~~r~~~~~~~~~iWrr~~p~~Pvt~K~~etRMG~GKGa~d~wva~V~~GrIl~EmgG~~~~~~Ar~al~~a 163 (221)
T KOG3422|consen 84 AQFEAMRLTRARKMNPRNNGKIWRRPAPNLPVTVKGNETRMGGGKGAIDHWVARVKAGRILFEMGGDVEEEEARQALLQA 163 (221)
T ss_pred HHHHHHHHHHHHhcCcccCccEEEEecCCCceeecCcceeccCCCCCcceeEEEecCCcEEEEeCCcccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcceEEEecchhHHHHHHHHHHHhccCCcccHHHHHHhhhcccccccCccccccccc
Q psy6080 176 ASKMPFKCMPCNEDILREMKEKEEREARDNINPYTFEYMIKNNIGNCRQWISTHVDYKYFG 236 (240)
Q Consensus 176 a~KLP~k~kiV~~~~l~~~~~~~~~~~~~n~n~~t~~~~~~~nm~~~~~~~s~~~d~~~~~ 236 (240)
|+|||++++|||.++|++++..+++...+|+|||||++||++||+||++|||| || |+|
T Consensus 164 a~klp~~~efVs~~~l~~~r~~~ee~~~~n~n~~~~~~v~~~n~~~~~~~Ls~-~d--~~g 221 (221)
T KOG3422|consen 164 AHKLPFKYEFVSEEMLARRRKKAEEETRMNKNKFNYGEVIKYNMQGCNSWLSS-YD--WKG 221 (221)
T ss_pred HhcCCccEEEeeHhhHHHHhhhhhhhcccCCCCccHHHHhhhhHHHHhhhcCh-hh--cCC
Confidence 99999999999999999999999999999999999999999999999999999 99 765
No 2
>CHL00044 rpl16 ribosomal protein L16
Probab=100.00 E-value=3e-47 Score=314.28 Aligned_cols=133 Identities=29% Similarity=0.346 Sum_probs=128.1
Q ss_pred CCCCCCCccccCCCCcccCcccCccEEEEEeEEEEEeeCcccchhhHHHHHHHHhcccccccceEEEEEcCCCCceecCC
Q psy6080 52 FIYNHKTPRTTKRLDLLRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKKG 131 (240)
Q Consensus 52 ~pk~~K~~K~~K~l~~~rG~~~~~~~L~~G~yGL~ale~G~It~~qlEaaR~~InR~L~kkk~~~iwirv~P~~pvTkK~ 131 (240)
.|+++||+|+||+ +++|.+.++++|.||+|||+|+|+|+|+++||||||++|+|+| ++++++|||+|||+|||+||
T Consensus 3 ~Pk~~k~~K~~k~--~~~g~~~~~~~l~~G~~GL~a~e~~~i~~~qiEaaR~~i~r~l--kk~~~i~irv~P~~pvtkkp 78 (135)
T CHL00044 3 SPKRTKFRKQHRG--RMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAITRYA--RRGGKIWIRIFPDKPVTMRP 78 (135)
T ss_pred CCCccccccccCC--CCCCcCCCCCeEeeccEEEEEccCcEECHHHHHHHHHHHHHhh--hcCcEEEEEECCCcceEeCc
Confidence 5999999999997 7899999999999999999999999999999999999999999 46899999999999999999
Q ss_pred CcccCCCCCCcceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEecc
Q psy6080 132 LGSRMGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNED 189 (240)
Q Consensus 132 ~gtRMGkGKG~i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~~~ 189 (240)
.|+|||+|||+||||||+|++|+||||++| ++.++|++||++|++|||++|+||+++
T Consensus 79 ~e~RMGkGKG~~~~~va~V~~G~ilfEi~g-~~~~~ak~al~~a~~KLP~k~~~v~~~ 135 (135)
T CHL00044 79 AETRMGSGKGSPEYWVAVVKPGRILYEMGG-VSETIARAAIKIAAYKMPIKTQFIISE 135 (135)
T ss_pred ccccccCCCCCccEEEEEECCCcEEEEEeC-CCHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 999999999999999999999999999999 678999999999999999999999754
No 3
>PRK09203 rplP 50S ribosomal protein L16; Reviewed
Probab=100.00 E-value=6.2e-46 Score=307.37 Aligned_cols=132 Identities=36% Similarity=0.432 Sum_probs=127.9
Q ss_pred CCCCCCCccccCCCCcccCcccCccEEEEEeEEEEEeeCcccchhhHHHHHHHHhcccccccceEEEEEcCCCCceecCC
Q psy6080 52 FIYNHKTPRTTKRLDLLRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKKG 131 (240)
Q Consensus 52 ~pk~~K~~K~~K~l~~~rG~~~~~~~L~~G~yGL~ale~G~It~~qlEaaR~~InR~L~kkk~~~iwirv~P~~pvTkK~ 131 (240)
.|+++||+|+||+ +++|.+..+++|.||+|||+|+|+|+|+++||||||++|+|+|+ +.+++|+|+|||+|||+||
T Consensus 3 ~Pk~~k~~K~~kg--r~~g~~~~~~~l~~G~~gL~a~e~g~i~~~qlEaaR~~i~r~Lk--k~g~~~irv~P~~~vt~k~ 78 (138)
T PRK09203 3 QPKRTKYRKQHKG--RNRGKAKRGNTVAFGEFGLKALEPGWITARQIEAARIAMTRHIK--RGGKVWIRIFPDKPVTKKP 78 (138)
T ss_pred CCCccccccCCCC--CCCCCCCCCCeEeeccEEEEECcCCeEcHHHHHHHHHHHHHHhh--cCceEEEEeCCCccEEcCh
Confidence 5999999999997 78999999999999999999999999999999999999999994 5689999999999999999
Q ss_pred CcccCCCCCCcceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEec
Q psy6080 132 LGSRMGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNE 188 (240)
Q Consensus 132 ~gtRMGkGKG~i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~~ 188 (240)
+++|||+|||+||||||+|++|+||||++| ++++.|++||++|++|||++|+||++
T Consensus 79 ~~~RMGkGKG~~~~~varVk~G~iifEi~~-~~~~~a~~al~~a~~KLP~~~kii~~ 134 (138)
T PRK09203 79 AEVRMGKGKGSPEYWVAVVKPGRILFEIAG-VSEELAREALRLAAAKLPIKTKFVKR 134 (138)
T ss_pred hhccccCCCCCCcEEEEEECCCCEEEEEeC-CCHHHHHHHHHHHhccCCCcEEEEEe
Confidence 999999999999999999999999999999 89999999999999999999999986
No 4
>TIGR01164 rplP_bact ribosomal protein L16, bacterial/organelle. This model describes bacterial and organellar ribosomal protein L16. The homologous protein of the eukaryotic cytosol is designated L10
Probab=100.00 E-value=1.6e-44 Score=294.84 Aligned_cols=125 Identities=33% Similarity=0.454 Sum_probs=121.5
Q ss_pred CCCCCCCccccCCCCcccCcccCccEEEEEeEEEEEeeCcccchhhHHHHHHHHhcccccccceEEEEEcCCCCceecCC
Q psy6080 52 FIYNHKTPRTTKRLDLLRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKKG 131 (240)
Q Consensus 52 ~pk~~K~~K~~K~l~~~rG~~~~~~~L~~G~yGL~ale~G~It~~qlEaaR~~InR~L~kkk~~~iwirv~P~~pvTkK~ 131 (240)
.|+++||+|+||+ +++|.+..+++|.||+|||+|+|+|+|+++||||||++|+|+|+ +++++||++|||+|||+||
T Consensus 2 ~Pk~~k~~K~~k~--~~~g~~~~~~~l~~G~~gL~a~e~~~i~~~qlEaaR~~i~r~l~--~~~~~~irv~P~~~vt~k~ 77 (126)
T TIGR01164 2 SPKRTKYRKQHRG--RMKGKAKRGNTVAFGEYGLQALEPGWITARQIEAARVAMTRYVK--RGGKLWIRIFPDKPYTKKP 77 (126)
T ss_pred CCCccccccccCC--CCCCcCCCCCeeeeccEeeEECcCCeEcHHHHHHHHHHHHHHHh--hCceEEEEECCCcCEEeCc
Confidence 5899999999997 78999999999999999999999999999999999999999994 6899999999999999999
Q ss_pred CcccCCCCCCcceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCc
Q psy6080 132 LGSRMGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPF 181 (240)
Q Consensus 132 ~gtRMGkGKG~i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~ 181 (240)
+++|||+|||+|+||||+|++|+||||+.| +++++|++||++|++|||+
T Consensus 78 ~~~RMGkGKG~~~~~varV~~G~ilfEi~~-~~~~~a~~al~~a~~KLP~ 126 (126)
T TIGR01164 78 LETRMGKGKGNPEYWVAVVKPGKILFEIAG-VPEEVAREAFRLAASKLPI 126 (126)
T ss_pred hhccccCCCCCCCEEEEEECCCCEEEEEeC-CCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999 8999999999999999996
No 5
>PF00252 Ribosomal_L16: Ribosomal protein L16p/L10e; InterPro: IPR016180 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a structural domain with an alpha/beta-hammerhead fold, where the beta-hammerhead motif is similar to that in barrel-sandwich hybrids. Domains of this structure can be found in ribosomal proteins L10e and L16. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 2ZJR_J 1Y69_K 3DLL_J 2ZJQ_J 2ZJP_J 3PIO_J 3CF5_J 3PIP_J 2ZKR_h 3J11_O ....
Probab=100.00 E-value=1e-44 Score=297.69 Aligned_cols=132 Identities=39% Similarity=0.537 Sum_probs=123.2
Q ss_pred CCCCCCccccCCCCcc-cCcccCccEEEEEeEEEEEeeCcccchhhHHHHHHHHhcccccccceEEEEEcCCCCceecCC
Q psy6080 53 IYNHKTPRTTKRLDLL-RGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKKG 131 (240)
Q Consensus 53 pk~~K~~K~~K~l~~~-rG~~~~~~~L~~G~yGL~ale~G~It~~qlEaaR~~InR~L~kkk~~~iwirv~P~~pvTkK~ 131 (240)
|+++||+|+|| ..++ .|.+..+++|.||+|||+|+++|+|+++|||+||++|+|+|+ +++++|+++|||+|||+||
T Consensus 1 Pk~~kyrk~~k-~~r~~~~~~~~~~~l~~g~~gl~a~~~g~l~~~qlEa~R~~i~r~lk--k~~~~~i~v~p~~~vTkk~ 77 (133)
T PF00252_consen 1 PKRTKYRKYQK-YPRINYGKSKPGNKLKFGDYGLKALEPGRLTSNQLEAARIAINRYLK--KNGKLWIRVFPHHPVTKKP 77 (133)
T ss_dssp TSCCSTSSSSS--SSTTTSTTSSCSSSSSSSEEEEESS-EEEEHHHHHHHHHHHHHHHH--HTSTEEESSSCEEEEEE-S
T ss_pred CCCCccCCCCC-CCCCCcccccCccEEEeeeeeEEEeeeeeechhhhHHHHHHHHHHhh--hheeEEEEeeeeeeeeeeh
Confidence 78999999999 5577 799999999999999999999999999999999999999995 4788999999999999999
Q ss_pred CcccCCCCCCcceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEe
Q psy6080 132 LGSRMGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCN 187 (240)
Q Consensus 132 ~gtRMGkGKG~i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~ 187 (240)
+|+|||+|||+|+||||+|++|+||||++|++++++|++||++|++|||++|+||+
T Consensus 78 ~~~RMG~GKG~~~~~~a~V~~G~iifEi~~~v~~~~a~~alk~a~~KLP~~~~~v~ 133 (133)
T PF00252_consen 78 LETRMGKGKGKIDHWVARVKPGQIIFEIGGKVNEEEAKEALKRAAKKLPIKTKFVS 133 (133)
T ss_dssp SSSSSSSSSCEEEEEEEEESTTEEEEEEESGSCHHHHHHHHHHHHHTSSSCEEEE-
T ss_pred hhhhhccCCCCccEEEEEECCCcEEEEECCcCCHHHHHHHHHHHHhhCCCCEEEeC
Confidence 99999999999999999999999999999878999999999999999999999985
No 6
>COG0197 RplP Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-42 Score=287.88 Aligned_cols=135 Identities=30% Similarity=0.350 Sum_probs=125.1
Q ss_pred CCCCCCCccccCCCCcccCc--ccCccEEEEEeEEEEEeeCcccchhhHHHHHHHHhcccccccceEEEEEcCCCCceec
Q psy6080 52 FIYNHKTPRTTKRLDLLRGP--EEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTK 129 (240)
Q Consensus 52 ~pk~~K~~K~~K~l~~~rG~--~~~~~~L~~G~yGL~ale~G~It~~qlEaaR~~InR~L~kkk~~~iwirv~P~~pvTk 129 (240)
.|+.+|+.|+|++ +..|. +..+|.+.||+|||+|+|.+|||++||||||+++||+|+ +.+.+|||+|||+|+|+
T Consensus 4 ~Pk~tk~rk~~~g--~~~~~~~~~~G~~~~fg~~gL~a~e~~~It~~qiEAARia~~R~lk--r~g~~wIRvfP~~~~~~ 79 (146)
T COG0197 4 QPKRTKYRKQHKG--RGPGITIAKGGNKVFFGEYGLVALEPGQITARQIEAARIAANRYLK--RGGGLWIRVFPDKPLTE 79 (146)
T ss_pred CCCcceeecccCC--CCCCceeccCCccccceEEEEEEcccceecHHHHHHHHHHHHHHhh--hcCCEEEEEcCCceeee
Confidence 4778888888886 77777 888889999999999999999999999999999999994 56779999999999999
Q ss_pred CCCcccCCCCCCcceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEecchh
Q psy6080 130 KGLGSRMGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNEDIL 191 (240)
Q Consensus 130 K~~gtRMGkGKG~i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~~~~l 191 (240)
||.++|||+|||++++|||+|++|++|||+.| ++++.|++||++|++|||++|++|+..+.
T Consensus 80 kp~e~Rmg~GkG~pegwaArVkpG~vlfei~g-~~e~~A~EAlr~Aa~KLP~~~~~v~~~~~ 140 (146)
T COG0197 80 KPGEDRMGKGKGKPEGWAARVKPGRVLFEIAG-VPEELAREALRRAAAKLPVKTKFVIRIEK 140 (146)
T ss_pred CCCcccccCCCCCccEEEEEecCCcEEEEEec-CcHHHHHHHHHHHhhcCCCceEEEEEEec
Confidence 99999999999999999999999999999999 67777999999999999999999988754
No 7
>cd01433 Ribosomal_L16_L10e Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts. Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with the 30S subunit, binding of aminoacyl-tRNA and interaction with antibiotics. L16 is required for the function of elongation factor P (EF-P), a protein involved in peptide bond synthesis through the stimulation of peptidyl transferase activity by the ribosome. Mutations in L16 and the adjoining bases of 23S rRNA confer antibiotic resistance in bacteria, suggesting a role for L16 in the formation of the antibiotic binding site. The GTPase RbgA (YlqF) is essential for the assembly of the large subunit, and it is believed to regulate the incorporation of L16. L10e is the archaeal and eukaryotic cytosolic homolog of bacterial L16. L16 and L10e exhibit structural differences at the N-terminus.
Probab=100.00 E-value=7.9e-39 Score=255.29 Aligned_cols=111 Identities=41% Similarity=0.525 Sum_probs=104.5
Q ss_pred ccEEEEEeEEEEEeeCcccchhhHHHHHHHHhcccccccceEEEEEcCCCCceecCCCcccCCCCCCcceEEEEEEeCCC
Q psy6080 75 HNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKKGLGSRMGGGKGSIDHYVTPVKTGR 154 (240)
Q Consensus 75 ~~~L~~G~yGL~ale~G~It~~qlEaaR~~InR~L~kkk~~~iwirv~P~~pvTkK~~gtRMGkGKG~i~~~varVk~G~ 154 (240)
++++.+|+|||+++|+|+|+++|||++|++|+|+|++. ++++|+++|||+|||+||.|+|||+|||+|+||||+|++|+
T Consensus 2 ~~~~~~g~~gL~a~e~~~i~~~~lEa~R~~i~r~l~k~-~~~~~ir~~p~~~vt~k~~~~rMGkGKG~~~~~~a~v~~G~ 80 (112)
T cd01433 2 GNKLFFGEYGLVALEPGRITAEQLEAARIAINRYLKKK-GGKLWIRVFPDHPVTKKPLETRMGKGKGKPEGWVARVKPGQ 80 (112)
T ss_pred CceeccceEEEEECcCCeECHHHHHHHHHHHHHHhhhc-CceEEEEecCCccEEECccccccCCCCCCccEEEEEECCCC
Confidence 56789999999999999999999999999999999642 59999999999999999999999999999999999999999
Q ss_pred EEEEEeccCCHHHHHHHHHHccccCCcceEEE
Q psy6080 155 IIIEVGGKCSYEEVLPYLRSCASKMPFKCMPC 186 (240)
Q Consensus 155 iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV 186 (240)
+|||+.|..+++.|++||+++++|||++++||
T Consensus 81 iifEi~~~~~~~~~~~alk~a~~Klp~~~k~i 112 (112)
T cd01433 81 ILFEVRGVPEEEVAKEALRRAAKKLPIKTKIV 112 (112)
T ss_pred EEEEEeCcCcHHHHHHHHHHhhccCCCcEEEC
Confidence 99999994338999999999999999999985
No 8
>PRK04199 rpl10e 50S ribosomal protein L10e; Reviewed
Probab=100.00 E-value=9e-38 Score=266.72 Aligned_cols=147 Identities=21% Similarity=0.203 Sum_probs=130.7
Q ss_pred CCCCCccCcCCCCCccCCCCCCCCCCCCCccccCCCCcccCcccCccEEEEEeEEEEEeeCcccchhhHHHHHHHHhccc
Q psy6080 30 PNYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKL 109 (240)
Q Consensus 30 ~~y~~~~~p~~~kl~~~~~~P~~pk~~K~~K~~K~l~~~rG~~~~~~~L~~G~yGL~ale~G~It~~qlEaaR~~InR~L 109 (240)
.-|+++..|+|+|.+|+.++|. |+.++|- .| +.. .++. -+.+|+|+|.|+|+++||||||++++|+|
T Consensus 7 ~~Yr~~~~~~ytr~~yi~g~P~-~kI~~f~---~G--~~~------~~~~-~~~~L~a~E~~~I~~~qiEAaR~ai~r~l 73 (172)
T PRK04199 7 RCYRHISKPAYTRREYIGGVPG-PKIVKFD---MG--NLS------GDFP-VEVSLVVEEPCQIRHNALEAARIAANKYL 73 (172)
T ss_pred hhhcccCCCCCchhcccCCCCC-CeEEEEe---cC--CcC------CCCC-EEEEEEEcccccccHHHHHHHHHHHHHHH
Confidence 4588899999999999999999 9999988 65 322 2233 56799999999999999999999999999
Q ss_pred ccc---cceEEEEEcCCCCceecCCCcccCC-----CC----CCcceEEEEEEeCCCEEEEEecc-CCHHHHHHHHHHcc
Q psy6080 110 DVK---KMFAVWRVDPPWLPVTKKGLGSRMG-----GG----KGSIDHYVTPVKTGRIIIEVGGK-CSYEEVLPYLRSCA 176 (240)
Q Consensus 110 ~kk---k~~~iwirv~P~~pvTkK~~gtRMG-----kG----KG~i~~~varVk~G~iIfEi~g~-~~~~~ak~aLk~aa 176 (240)
++. .+|++|||+|||+|||+||+++||| +| ||++++|||+|++|+||||+.|. .+++.|++||++|+
T Consensus 74 kk~~G~~~~k~wIrvfP~~~lt~kp~~~rmGAdRmg~GMr~akG~p~~wva~Vk~G~ilfei~~~~~~~~~akeAlr~a~ 153 (172)
T PRK04199 74 TKTVGRSNYHLKIRVYPHHVLRENKMATGAGADRVSDGMRLAFGKPVGTAARVEKGQKIFTVRVNPEHLEAAKEALRRAA 153 (172)
T ss_pred HhccCCcccEEEEEeCCCcceecChhHhhcchhhhccCcccCCCCccEEEEEECcCCEEEEEEecCCCHHHHHHHHHHhh
Confidence 752 3569999999999999999999666 89 99999999999999999999973 58999999999999
Q ss_pred ccCCcceEEEecc
Q psy6080 177 SKMPFKCMPCNED 189 (240)
Q Consensus 177 ~KLP~k~kiV~~~ 189 (240)
+|||++|+||..+
T Consensus 154 ~KLP~k~kiv~~~ 166 (172)
T PRK04199 154 MKLPTPCRIVVEK 166 (172)
T ss_pred ccCCCcEEEEEec
Confidence 9999999999764
No 9
>TIGR00279 L10e ribosomal protein L10.e. L10.e is distantly related to eubacterial ribosomal protein L16.
Probab=100.00 E-value=8.9e-38 Score=266.65 Aligned_cols=146 Identities=18% Similarity=0.134 Sum_probs=130.5
Q ss_pred CCCCccCcCCCCCccCCCCCCCCCCCCCccccCCCCcccCcccCccEEEEEeEEEEEeeCcccchhhHHHHHHHHhcccc
Q psy6080 31 NYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLD 110 (240)
Q Consensus 31 ~y~~~~~p~~~kl~~~~~~P~~pk~~K~~K~~K~l~~~rG~~~~~~~L~~G~yGL~ale~G~It~~qlEaaR~~InR~L~ 110 (240)
-|+.+..|+|||.+|+.++|. |+...|- .| +. ..++. -...|+|+|.|+||++||||||++++|+|+
T Consensus 8 ~Yr~~~~~~Ytr~~y~~g~P~-~kI~~f~---~G--~~------~~~fp-~~~~L~a~E~~~I~~~qiEAaR~a~~r~lk 74 (172)
T TIGR00279 8 CYRYQKNRPYTRSEYIKGVPG-SKIRIYD---MG--NK------SAEFP-VCVHLVAKEPEQIRHNALEAARIAANKYMT 74 (172)
T ss_pred hhcccCCCCCchhhccCCCCC-CcEEEEE---CC--Cc------cCCCC-EEEEEEECccceecHHHHHHHHHHHHHHHH
Confidence 588899999999999999999 9988887 65 32 11233 567899999999999999999999999997
Q ss_pred cc---cceEEEEEcCCCCceecCCCcccCCC---------CCCcceEEEEEEeCCCEEEEEecc-CCHHHHHHHHHHccc
Q psy6080 111 VK---KMFAVWRVDPPWLPVTKKGLGSRMGG---------GKGSIDHYVTPVKTGRIIIEVGGK-CSYEEVLPYLRSCAS 177 (240)
Q Consensus 111 kk---k~~~iwirv~P~~pvTkK~~gtRMGk---------GKG~i~~~varVk~G~iIfEi~g~-~~~~~ak~aLk~aa~ 177 (240)
+. .+|++|||+|||+|||+||+++|||+ |||++++|||+|++|+||||+.|. .+++.|++||++|++
T Consensus 75 k~~g~~~~k~wIRvfP~~~lt~kp~~trmGaDRlq~GMr~gkG~p~~wvArVk~Gqiifei~~~~~~~~~AkeAlr~A~~ 154 (172)
T TIGR00279 75 RRAGRMGYHLKIRVYPHHILRENKMATGAGADRIQQGMRGAFGKPVGTAARVKIGQKIFSVWTKPSNFDVAKEALRRAAM 154 (172)
T ss_pred hhcCccceEEEEEECCCCceecCchhhhcCchhhhcccccCCCCccEEEEEECcCCEEEEEEeecCCHHHHHHHHHHHhc
Confidence 52 35799999999999999999999996 999999999999999999999993 388999999999999
Q ss_pred cCCcceEEEecc
Q psy6080 178 KMPFKCMPCNED 189 (240)
Q Consensus 178 KLP~k~kiV~~~ 189 (240)
|||++|+||..+
T Consensus 155 KLP~~~kiv~~~ 166 (172)
T TIGR00279 155 KFPVPCKIVIEK 166 (172)
T ss_pred cCCCcEEEEEec
Confidence 999999999763
No 10
>PTZ00173 60S ribosomal protein L10; Provisional
Probab=100.00 E-value=2.9e-34 Score=251.53 Aligned_cols=151 Identities=16% Similarity=0.149 Sum_probs=131.1
Q ss_pred CCCCCccCcCCCCCccCCCCCCCCCCCCCccccCCCCcccCcccCccEEEEEeEEEEEeeCcccchhhHHHHHHHHhccc
Q psy6080 30 PNYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKL 109 (240)
Q Consensus 30 ~~y~~~~~p~~~kl~~~~~~P~~pk~~K~~K~~K~l~~~rG~~~~~~~L~~G~yGL~ale~G~It~~qlEaaR~~InR~L 109 (240)
--|+.+..|+|||.+|+.+||. |+.+.|- .| +.+... .++- -...|+++|.++||++||||||+++||+|
T Consensus 7 rcYr~~~~~pY~r~~y~~gvP~-~kI~~fd---~G--~~~a~~---~~fp-~~v~Lvs~E~~qIss~aLEAaRia~nr~l 76 (213)
T PTZ00173 7 RCYRYCKNKPYPKSRFCRGVPD-PKIRIYD---IG--RKKATV---DEFP-VCVHIVSDEYEQISSEALEAARISANKYM 76 (213)
T ss_pred hhhhcccCCCCchhhccCCCCC-CcEEEEe---cC--CCcCCc---ccCC-eEEEEEEcccccccHHHHHHHHHHHHHhh
Confidence 3488899999999999999999 9998887 65 333211 1122 45689999999999999999999999999
Q ss_pred c-c--ccceEEEEEcCCCCce------ecCC---CcccCCCCCCcceEEEEEEeCCCEEEEEecc-CCHHHHHHHHHHcc
Q psy6080 110 D-V--KKMFAVWRVDPPWLPV------TKKG---LGSRMGGGKGSIDHYVTPVKTGRIIIEVGGK-CSYEEVLPYLRSCA 176 (240)
Q Consensus 110 ~-k--kk~~~iwirv~P~~pv------TkK~---~gtRMGkGKG~i~~~varVk~G~iIfEi~g~-~~~~~ak~aLk~aa 176 (240)
. . +.+|++|||+||||+| |.+| +++|||+|||++++|||+|++|+||||+.++ .+++.|++||++|+
T Consensus 77 ~K~~Gk~~fhl~IRv~P~hvlR~nKm~T~AgAdrlq~gMr~gfGkp~g~vArVk~Gqiifei~~~~~~~~~AkeALrrA~ 156 (213)
T PTZ00173 77 VKRAGKDGFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPNGTCARVRIGQILLSIRTKEAYVPQAIEALRRAK 156 (213)
T ss_pred hhhcCCccceEEEEEcCCcccccccccccccCchhhhhcccCCCCccEEEEEECcCCEEEEEecccCCHHHHHHHHHHhc
Confidence 3 3 4678899999999999 7734 8999999999999999999999999999995 89999999999999
Q ss_pred ccCCcceEEEecch
Q psy6080 177 SKMPFKCMPCNEDI 190 (240)
Q Consensus 177 ~KLP~k~kiV~~~~ 190 (240)
+|||++++||....
T Consensus 157 ~KlP~~~kIv~~~~ 170 (213)
T PTZ00173 157 YKFPGRQKIVVSNK 170 (213)
T ss_pred ccCCCeEEEEEecc
Confidence 99999999997754
No 11
>KOG0857|consensus
Probab=98.32 E-value=5.7e-07 Score=79.41 Aligned_cols=105 Identities=22% Similarity=0.228 Sum_probs=88.1
Q ss_pred EEEEeeCcccchhhHHHHHHHHhccccc---ccceEEEEEcCC-CCceecCC---------CcccCCCCCCcceEEEEEE
Q psy6080 84 GLVALSGGRMNYRHFETIRFAMMRKLDV---KKMFAVWRVDPP-WLPVTKKG---------LGSRMGGGKGSIDHYVTPV 150 (240)
Q Consensus 84 GL~ale~G~It~~qlEaaR~~InR~L~k---kk~~~iwirv~P-~~pvTkK~---------~gtRMGkGKG~i~~~varV 150 (240)
-++..+.-.|++.++||+|...++++.+ +..|.+-++++| .|+++-.. +.|-|-+..|++.+.||+|
T Consensus 51 ~~~~~~~~~l~~~~~eA~ri~~~~~~~~~~~~d~~~~r~~~~~~fhv~~i~k~ls~~~~~RLQtgmrga~gkp~G~varV 130 (212)
T KOG0857|consen 51 HLVSNEIEQLSSEALEAARICANKPMVKSKGKDAFHLRVRVHPNFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTVARV 130 (212)
T ss_pred hhhhHHHHhHHHHHHHHhhhcccCcccccccccchhhhhhcccchhHHHHhhhhcccchhhhhhcccccccCccceEEEE
Confidence 3556666799999999999999999875 467888899999 55544333 4666888889999999999
Q ss_pred eCCCEEEEEecc-CCHHHHHHHHHHccccCCcceEEEec
Q psy6080 151 KTGRIIIEVGGK-CSYEEVLPYLRSCASKMPFKCMPCNE 188 (240)
Q Consensus 151 k~G~iIfEi~g~-~~~~~ak~aLk~aa~KLP~k~kiV~~ 188 (240)
.-|++||.+... .+.+.+.++|.++..|+|...+++..
T Consensus 131 ~iGqvi~Svrtk~~nkeh~ieal~rak~kfpG~qki~vs 169 (212)
T KOG0857|consen 131 HIGQVIMSVRTKLQNKEHVIEALRRAKFKFPGRQKIVVS 169 (212)
T ss_pred EcCceEEEeecCcccHHHHHHHHHhccccCCCceeEEee
Confidence 999999999986 67899999999999999998877743
No 12
>PRK14445 acylphosphatase; Provisional
Probab=48.42 E-value=61 Score=24.80 Aligned_cols=44 Identities=16% Similarity=0.260 Sum_probs=32.7
Q ss_pred cceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEec
Q psy6080 142 SIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNE 188 (240)
Q Consensus 142 ~i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~~ 188 (240)
.+.+||.-..-|+|-+++.| +.+.+.+.+..+. +.|-.+++..-
T Consensus 31 gl~G~V~N~~dG~Vei~~qG--~~~~l~~f~~~l~-~gP~~a~V~~i 74 (91)
T PRK14445 31 NLSGWVRNLPDGTVEIEAQG--SSGMIDELIKQAE-RGPSRSSVTSI 74 (91)
T ss_pred CCEEEEEECCCCeEEEEEEE--CHHHHHHHHHHHH-hCCCCcEEEEE
Confidence 36899999999999999999 3444555555554 78887877543
No 13
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=47.50 E-value=25 Score=29.01 Aligned_cols=59 Identities=17% Similarity=0.264 Sum_probs=30.5
Q ss_pred EEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEE--ecchhHHHHHHHHHHHhccCCcccHHH
Q psy6080 145 HYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPC--NEDILREMKEKEEREARDNINPYTFEY 213 (240)
Q Consensus 145 ~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV--~~~~l~~~~~~~~~~~~~n~n~~t~~~ 213 (240)
.=.|.|.+|-+||+ ......+.+..+=+.+...+.+...++ +.+.|++ .-+.|||.++.
T Consensus 35 ~V~Tyi~SGNvvf~-~~~~~~~l~~~ie~~l~~~fG~~v~v~vrs~~el~~---------i~~~nPf~~~~ 95 (137)
T PF08002_consen 35 NVRTYIQSGNVVFE-SDRDPAELAAKIEKALEERFGFDVPVIVRSAEELRA---------IIAANPFPWEA 95 (137)
T ss_dssp EEEEETTTTEEEEE-ESS-HHHHHHHHHHHHHHH-TT---EEEEEHHHHHH---------HHTT--GGGGS
T ss_pred CceEEEeeCCEEEe-cCCChHHHHHHHHHHHHHhcCCCeEEEEeeHHHHHH---------HHHHCCCcccc
Confidence 34578999999999 542333333344444555555555444 4444443 45667998754
No 14
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=47.22 E-value=24 Score=24.01 Aligned_cols=13 Identities=23% Similarity=0.562 Sum_probs=12.0
Q ss_pred EEeCCCEEEEEec
Q psy6080 149 PVKTGRIIIEVGG 161 (240)
Q Consensus 149 rVk~G~iIfEi~g 161 (240)
.|++|++|+++..
T Consensus 23 ~VkkGd~L~~ld~ 35 (50)
T PF13533_consen 23 QVKKGDVLLVLDS 35 (50)
T ss_pred EEcCCCEEEEECc
Confidence 6899999999987
No 15
>PRK14426 acylphosphatase; Provisional
Probab=40.61 E-value=1.1e+02 Score=23.44 Aligned_cols=42 Identities=14% Similarity=0.146 Sum_probs=31.9
Q ss_pred ceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEE
Q psy6080 143 IDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPC 186 (240)
Q Consensus 143 i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV 186 (240)
+.+||.-..-|.|-.++.| +.+.+.+.++.+..-+|-.+++-
T Consensus 32 l~G~V~N~~dG~Vei~~~G--~~~~i~~f~~~l~~g~P~~a~V~ 73 (92)
T PRK14426 32 LTGYAKNLDDGSVEVVACG--EEEQVEKLMEWLKEGGPRSARVD 73 (92)
T ss_pred CEEEEEECCCCcEEEEEEe--CHHHHHHHHHHHhcCCCCCeEEE
Confidence 6899999999999999999 34556666666666667776654
No 16
>PRK14429 acylphosphatase; Provisional
Probab=38.90 E-value=1.1e+02 Score=23.38 Aligned_cols=42 Identities=21% Similarity=0.170 Sum_probs=31.2
Q ss_pred ceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEe
Q psy6080 143 IDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCN 187 (240)
Q Consensus 143 i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~ 187 (240)
+.+||.-..-|+|-.++.| +.+.+.+.+..+... |-.+++..
T Consensus 30 l~G~V~N~~dG~Vei~~qG--~~~~i~~f~~~l~~g-p~~a~V~~ 71 (90)
T PRK14429 30 VTGYVTNCEDGSVEILAQG--SDPAVDNLIAWCEVG-VPCTEVLR 71 (90)
T ss_pred CEEEEEECCCCeEEEEEEe--CHHHHHHHHHHHhhC-CCceEEEE
Confidence 7899999999999999999 445455555555555 66666543
No 17
>PRK14435 acylphosphatase; Provisional
Probab=37.58 E-value=1.2e+02 Score=23.25 Aligned_cols=43 Identities=23% Similarity=0.381 Sum_probs=32.1
Q ss_pred ceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEec
Q psy6080 143 IDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNE 188 (240)
Q Consensus 143 i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~~ 188 (240)
+.+||.-..-|+|-.++.| +.+.+.+.+..+. .-|..+++..-
T Consensus 30 l~G~V~N~~dG~Vei~~~G--~~~~i~~f~~~l~-~gp~~a~V~~v 72 (90)
T PRK14435 30 VKGYVMNMDDGSVFIHAEG--DENALRRFLNEVA-KGPPAAVVTNV 72 (90)
T ss_pred CEEEEEECCCCCEEEEEEE--CHHHHHHHHHHHh-hCCCCcEEEEE
Confidence 7899999999999999999 3344555555554 77877777543
No 18
>PRK14451 acylphosphatase; Provisional
Probab=37.29 E-value=1.3e+02 Score=23.01 Aligned_cols=42 Identities=14% Similarity=0.197 Sum_probs=32.8
Q ss_pred ceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEe
Q psy6080 143 IDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCN 187 (240)
Q Consensus 143 i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~ 187 (240)
+.+||.-..-|+|-+++.| +.+.+.+.+..+. +-|..+++..
T Consensus 31 l~G~V~N~~dG~Vei~~qG--~~~~i~~f~~~l~-~gp~~a~V~~ 72 (89)
T PRK14451 31 ISGWARNLADGRVEVFACG--KEDKLEEFYTWLQ-KGPLNARVDV 72 (89)
T ss_pred CEEEEEECCCCCEEEEEEE--CHHHHHHHHHHHh-hCCCceEEEE
Confidence 7899999999999999999 4455555656555 6787787754
No 19
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=37.08 E-value=84 Score=23.58 Aligned_cols=42 Identities=17% Similarity=0.248 Sum_probs=31.4
Q ss_pred ceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEe
Q psy6080 143 IDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCN 187 (240)
Q Consensus 143 i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~ 187 (240)
+.+||....-|+|-.++.| +.+.+...+..+....|. +.+-.
T Consensus 32 l~G~V~N~~dg~V~i~~~G--~~~~l~~f~~~l~~g~p~-a~V~~ 73 (91)
T PF00708_consen 32 LTGWVRNLPDGSVEIEAEG--EEEQLEEFIKWLKKGPPP-ARVDE 73 (91)
T ss_dssp -EEEEEE-TTSEEEEEEEE--EHHHHHHHHHHHHHSSTT-SEEEE
T ss_pred CceEEEECCCCEEEEEEEe--CHHHHHHHHHHHHhCCCC-cEEEE
Confidence 8999999999999999999 456566777777777766 76643
No 20
>PRK14441 acylphosphatase; Provisional
Probab=35.42 E-value=1.3e+02 Score=23.22 Aligned_cols=44 Identities=20% Similarity=0.275 Sum_probs=32.5
Q ss_pred cceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEec
Q psy6080 142 SIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNE 188 (240)
Q Consensus 142 ~i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~~ 188 (240)
.+.+||.-..-|+|-.++.| +.+.+...+..+. ..|..+.+..-
T Consensus 32 gL~G~V~N~~dG~Vei~~qG--~~~~i~~f~~~l~-~gp~~a~V~~v 75 (93)
T PRK14441 32 GVEGWVRNLPDGRVEAEAEG--ERAAVGALVRWCH-AGPPAARVDRV 75 (93)
T ss_pred CcEEEEEECCCCEEEEEEEE--CHHHHHHHHHHHh-hCCCCcEEEEE
Confidence 36899999999999999999 3444555555554 78877776543
No 21
>PRK14420 acylphosphatase; Provisional
Probab=35.39 E-value=1.3e+02 Score=22.89 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=31.2
Q ss_pred ceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEe
Q psy6080 143 IDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCN 187 (240)
Q Consensus 143 i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~ 187 (240)
+.+||.-..-|+|-+++.| +.+.+.+.+..+..- |-.+.+.+
T Consensus 30 l~G~V~N~~dG~Vei~~qG--~~~~i~~f~~~l~~~-p~~a~V~~ 71 (91)
T PRK14420 30 LTGWVKNRDDGTVEIEAEG--PEEALQLFLDAIEKG-SPFSKVTD 71 (91)
T ss_pred CEEEEEECCCCcEEEEEEE--CHHHHHHHHHHHHhC-CCCCEEEE
Confidence 8899999999999999999 345566666666555 55666543
No 22
>PRK14440 acylphosphatase; Provisional
Probab=34.70 E-value=1.4e+02 Score=22.80 Aligned_cols=42 Identities=17% Similarity=0.176 Sum_probs=31.0
Q ss_pred ceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEe
Q psy6080 143 IDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCN 187 (240)
Q Consensus 143 i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~ 187 (240)
+.+||....-|+|-+++.| +.+.+.+.+..+. +-|-.+++..
T Consensus 31 l~G~V~N~~dG~Vei~~~G--~~~~v~~f~~~l~-~gp~~a~V~~ 72 (90)
T PRK14440 31 IKGYAKNLPDGSVEVVAEG--YEEALSKLLERIK-QGPPAAEVEK 72 (90)
T ss_pred CEEEEEECCCCCEEEEEEc--CHHHHHHHHHHHh-hCCCCcEEEE
Confidence 7899999999999999999 3344555555554 6777776654
No 23
>PRK14444 acylphosphatase; Provisional
Probab=34.11 E-value=1.5e+02 Score=22.81 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=31.5
Q ss_pred ceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEe
Q psy6080 143 IDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCN 187 (240)
Q Consensus 143 i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~ 187 (240)
+.+||.-..-|.|-.++.| +.+.+.+.+..+. +.|..+++..
T Consensus 32 l~G~V~N~~dG~Vei~~qG--~~~~i~~f~~~l~-~gp~~a~V~~ 73 (92)
T PRK14444 32 VKGWVRNLSDGRVEAVFEG--SRPAVQKMISWCY-SGPSHARVER 73 (92)
T ss_pred CEEEEEECCCCcEEEEEEc--CHHHHHHHHHHHH-hCCCCcEEEE
Confidence 6899999999999999999 3444555555544 7787777753
No 24
>PRK14425 acylphosphatase; Provisional
Probab=33.67 E-value=1.4e+02 Score=23.02 Aligned_cols=44 Identities=9% Similarity=0.172 Sum_probs=32.5
Q ss_pred ceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEecc
Q psy6080 143 IDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNED 189 (240)
Q Consensus 143 i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~~~ 189 (240)
+.+||.-..-|.|-+++.| +.+.+...+..+. +-|-.+++.+-+
T Consensus 34 l~G~V~N~~dGsVei~~qG--~~~~le~f~~~l~-~gp~~a~V~~i~ 77 (94)
T PRK14425 34 LTGWVRNESDGSVTALIAG--PDSAISAMIERFR-RGPPGASVSGVE 77 (94)
T ss_pred CEEEEEECCCCeEEEEEEe--CHHHHHHHHHHHh-hCCCceEEEEEE
Confidence 7899999999999999999 3344444444444 688888876543
No 25
>PRK14436 acylphosphatase; Provisional
Probab=32.83 E-value=1.6e+02 Score=22.53 Aligned_cols=43 Identities=14% Similarity=0.147 Sum_probs=32.1
Q ss_pred ceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEec
Q psy6080 143 IDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNE 188 (240)
Q Consensus 143 i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~~ 188 (240)
+.+||.-..-|+|-+++.| +.+.+.+.+..+. +-|-.+++.+-
T Consensus 32 l~G~V~N~~dG~Vei~~qG--~~~~i~~f~~~l~-~gp~~a~V~~v 74 (91)
T PRK14436 32 VNGWVRNLPDGSVEAVLEG--DEERVEALIGWAH-QGPPLARVTRV 74 (91)
T ss_pred CEEEEEECCCCcEEEEEEc--CHHHHHHHHHHHh-hCCCceEEEEE
Confidence 7899999999999999999 3455555555554 67777776543
No 26
>PRK14421 acylphosphatase; Provisional
Probab=32.79 E-value=1.3e+02 Score=23.60 Aligned_cols=43 Identities=14% Similarity=0.254 Sum_probs=31.7
Q ss_pred ceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEec
Q psy6080 143 IDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNE 188 (240)
Q Consensus 143 i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~~ 188 (240)
+.+||.-..-|+|-.++.| +.+.+.+.+..+ .+-|-.+++..-
T Consensus 32 L~G~V~N~~dG~Vei~~~G--~~~~i~~f~~~l-~~gP~~a~V~~v 74 (99)
T PRK14421 32 LEGWVRNRRDGSVEALFAG--PADAVAEMIARC-RRGPSAARVDAV 74 (99)
T ss_pred CEEEEEECCCCEEEEEEeC--CHHHHHHHHHHH-HhCCCCcEEEEE
Confidence 7899999999999999999 334444444444 477888877543
No 27
>PRK14433 acylphosphatase; Provisional
Probab=32.66 E-value=1.3e+02 Score=22.91 Aligned_cols=42 Identities=19% Similarity=0.234 Sum_probs=31.1
Q ss_pred ceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEe
Q psy6080 143 IDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCN 187 (240)
Q Consensus 143 i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~ 187 (240)
+.+||....-|+|-+++.|. .+ +.+.|.....+-|..+++..
T Consensus 29 l~G~V~N~~dG~Vei~~~G~--~~-~i~~f~~~l~~gP~~a~V~~ 70 (87)
T PRK14433 29 LSGYAENLSDGRVEVVAEGP--KE-ALERLLHWLRRGPRHARVEA 70 (87)
T ss_pred CEEEEEECCCCCEEEEEEEC--HH-HHHHHHHHHhhCCCCcEEEE
Confidence 67999999999999999993 33 44555555557788777654
No 28
>PRK05783 hypothetical protein; Provisional
Probab=32.53 E-value=47 Score=25.70 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=27.9
Q ss_pred EEEEeCCCEE-EEEeccCCHHHHHHHHHHccccC
Q psy6080 147 VTPVKTGRII-IEVGGKCSYEEVLPYLRSCASKM 179 (240)
Q Consensus 147 varVk~G~iI-fEi~g~~~~~~ak~aLk~aa~KL 179 (240)
+.-|+.|+.| +++.+ .+.++|++-...+|.+|
T Consensus 35 V~~VRvGK~iel~l~~-~~~e~a~~~v~~mc~~L 67 (84)
T PRK05783 35 IIEVRAGKYLVFKIEA-NSPEEAKELALKIAREG 67 (84)
T ss_pred cceEEeeEEEEEEEcC-CCHHHHHHHHHHHHHhc
Confidence 7889999988 88887 57788999999999998
No 29
>PRK14443 acylphosphatase; Provisional
Probab=31.79 E-value=1.8e+02 Score=22.65 Aligned_cols=44 Identities=14% Similarity=0.144 Sum_probs=33.2
Q ss_pred cceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEe
Q psy6080 142 SIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCN 187 (240)
Q Consensus 142 ~i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~ 187 (240)
.+.+||.-..-|.|-+++.| +.+.+.+.+..+..-.|-.++|..
T Consensus 31 gl~G~V~N~~dG~Vei~~qG--~~~~l~~f~~~l~~g~p~~a~V~~ 74 (93)
T PRK14443 31 DISGTVKNLDDGSVEIHAIA--EEENLNKFIDAIKKGPSPGCRIEH 74 (93)
T ss_pred CCEEEEEECCCCEEEEEEEC--CHHHHHHHHHHHhcCCCCcEEEEE
Confidence 36899999999999999999 445566666766666654676654
No 30
>PRK14442 acylphosphatase; Provisional
Probab=30.57 E-value=1.9e+02 Score=22.16 Aligned_cols=44 Identities=16% Similarity=0.220 Sum_probs=32.1
Q ss_pred ceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEecc
Q psy6080 143 IDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNED 189 (240)
Q Consensus 143 i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~~~ 189 (240)
+.+||.-..-|+|-.++.| +.+.+.+.+..+ .+.|-.+++.+-+
T Consensus 32 l~G~V~N~~dG~Vei~~qG--~~~~i~~f~~~l-~~gp~~a~V~~v~ 75 (91)
T PRK14442 32 LDGWVRNLDDGRVEVVWEG--EEDRAKALERWL-GRGPRHAEVSAVE 75 (91)
T ss_pred CEEEEEECCCCCEEEEEEc--CHHHHHHHHHHH-hhCCCCeEEEEEE
Confidence 6899999999999999999 334444444444 4778888776543
No 31
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=30.33 E-value=74 Score=23.70 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=17.2
Q ss_pred EEeCCCEEEEEeccCC--HHHHHHHHH
Q psy6080 149 PVKTGRIIIEVGGKCS--YEEVLPYLR 173 (240)
Q Consensus 149 rVk~G~iIfEi~g~~~--~~~ak~aLk 173 (240)
+|++|++|++|....+ .+.|.+.|+
T Consensus 43 ~V~~Gd~l~~i~~~~~~~~~~a~~~~~ 69 (75)
T PF07831_consen 43 RVEKGDPLATIYANDEARLEEAVERLR 69 (75)
T ss_dssp EEBTTSEEEEEEESSSSHHHHHHHHHH
T ss_pred EECCCCeEEEEEcCChHHHHHHHHHHH
Confidence 7999999999998422 344444443
No 32
>PRK14449 acylphosphatase; Provisional
Probab=30.21 E-value=1.9e+02 Score=22.01 Aligned_cols=42 Identities=14% Similarity=0.111 Sum_probs=30.4
Q ss_pred ceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEe
Q psy6080 143 IDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCN 187 (240)
Q Consensus 143 i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~ 187 (240)
+.+||.-..-|+|-+++.| +.+.+.+.+..+... |..+++..
T Consensus 31 l~G~V~N~~dG~Vei~~~G--~~~~v~~f~~~l~~~-~~~a~V~~ 72 (90)
T PRK14449 31 ITGYAENLYDGSVEVVAEG--DEENIKELINFIKTG-LRWARVDN 72 (90)
T ss_pred CEEEEEECCCCeEEEEEEe--CHHHHHHHHHHHhhC-CCceEEEE
Confidence 7899999999999999999 344455555555554 44566554
No 33
>PRK14446 acylphosphatase; Provisional
Probab=29.49 E-value=2e+02 Score=22.00 Aligned_cols=43 Identities=9% Similarity=-0.045 Sum_probs=32.5
Q ss_pred ceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEec
Q psy6080 143 IDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNE 188 (240)
Q Consensus 143 i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~~ 188 (240)
+.+||.-..-|.|-+++.| +.+.+...+..+. +.|-.++|.+-
T Consensus 30 l~G~V~N~~dGsVei~~qG--~~~~l~~f~~~l~-~gP~~a~V~~v 72 (88)
T PRK14446 30 LVGHARNQADGSVEVVAAG--SAAALEALEAWLW-QGPPAATVAAV 72 (88)
T ss_pred eEEEEEECCCCCEEEEEEe--CHHHHHHHHHHHh-hCCCceEEEEE
Confidence 7899999999999999999 3444555555555 78877877643
No 34
>PRK14432 acylphosphatase; Provisional
Probab=29.20 E-value=2.1e+02 Score=22.10 Aligned_cols=43 Identities=14% Similarity=0.101 Sum_probs=32.0
Q ss_pred ceEEEEEEeCCCEEEEEe-ccCCHHHHHHHHHHccccCCcceEEEec
Q psy6080 143 IDHYVTPVKTGRIIIEVG-GKCSYEEVLPYLRSCASKMPFKCMPCNE 188 (240)
Q Consensus 143 i~~~varVk~G~iIfEi~-g~~~~~~ak~aLk~aa~KLP~k~kiV~~ 188 (240)
+.+||.-..-|+|-.++. | +.+.+.+.+..+..- |-.+++..-
T Consensus 30 l~G~V~N~~dG~Vei~~~~G--~~~~v~~f~~~l~~g-p~~a~V~~v 73 (93)
T PRK14432 30 LKGFVKNLNDGRVEIVAFFN--TKEQMKKFEKLLKNG-NKYSNIENI 73 (93)
T ss_pred CEEEEEECCCCCEEEEEEEC--CHHHHHHHHHHHHhC-CCccEEEEE
Confidence 789999999999999997 7 345555666655555 777777543
No 35
>PRK14424 acylphosphatase; Provisional
Probab=28.35 E-value=2e+02 Score=22.30 Aligned_cols=43 Identities=12% Similarity=0.121 Sum_probs=30.3
Q ss_pred ceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEec
Q psy6080 143 IDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNE 188 (240)
Q Consensus 143 i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~~ 188 (240)
+.+||.-..-|+|-+++.|. .+.+...+..+ ..-|-.+.+.+-
T Consensus 35 l~G~V~N~~dG~Vei~~qG~--~~~v~~f~~~l-~~gp~~a~V~~v 77 (94)
T PRK14424 35 LRGWVANLEDGTVEAMIQGP--AAQIDRMLAWL-RHGPPAARVTEV 77 (94)
T ss_pred CeEEEEECCCCCEEEEEEEC--HHHHHHHHHHH-HhCCCCcEEEEE
Confidence 78999999999999999993 33344444444 466777777643
No 36
>PF13133 DUF3949: Protein of unknown function (DUF3949)
Probab=27.99 E-value=28 Score=25.67 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=21.3
Q ss_pred Eecch-hHHHHHHHHHHHhccC-CcccHH
Q psy6080 186 CNEDI-LREMKEKEEREARDNI-NPYTFE 212 (240)
Q Consensus 186 V~~~~-l~~~~~~~~~~~~~n~-n~~t~~ 212 (240)
++++. -+.|.-||+.+..+-| |||+|-
T Consensus 21 ~sQ~e~Y~nMsfeEeqLHy~~Qgn~f~~p 49 (62)
T PF13133_consen 21 KSQEELYDNMSFEEEQLHYNVQGNPFFIP 49 (62)
T ss_pred ccHHHHHHhcchhHHHHHHhhcCCcccch
Confidence 44544 4589999999999999 999863
No 37
>cd07028 RNAP_RPB3_like RPB3 subunit of RNA polymerase. The eukaryotic RPB3 subunit of RNA polymerase (RNAP), as well as its archaeal (D subunit) and bacterial (alpha subunit) counterparts, is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. At least three distinct RNAP complexes are found in eukaryotic nuclei: RNAP I, RNAP II, and RNAP III, for the synthesis of ribosomal RNA precursor, mRNA precursor, and 5S and tRNA, respectively. A single distinct RNAP complex is found in prokaryotes and archaea, which may be responsible for the synthesis of all RNAs. The RPB3 subunit is similar to the bacterial RNAP alpha subunit in that it contains two subdomains: one subdomain is similar to the eukaryotic Rpb11/AC19/archaeal L subunit which is involved in dimerization; and
Probab=27.45 E-value=59 Score=28.94 Aligned_cols=85 Identities=13% Similarity=0.105 Sum_probs=47.4
Q ss_pred eEEEEEeeCc----ccchhhHHHHHHHHhcccccccceEEEEEcCCCCceecCCCcc--------cCCCCCCcceEEEEE
Q psy6080 82 QYGLVALSGG----RMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKKGLGS--------RMGGGKGSIDHYVTP 149 (240)
Q Consensus 82 ~yGL~ale~G----~It~~qlEaaR~~InR~L~kkk~~~iwirv~P~~pvTkK~~gt--------RMGkGKG~i~~~var 149 (240)
.+.|.+..++ -+++++|+.-- ... .... + .-++|++++++-..|+ ++|.|| .+---+|
T Consensus 95 ~~~l~~~g~~~~~~~V~s~DL~~~~--~~~---~~~~--v-~pv~~di~I~kL~~gq~i~le~~~~~G~G~--~hAk~sP 164 (212)
T cd07028 95 VLTLQAFAESESTTNVYSKDLVIVS--NLM---GRNI--G-HPIIQDILICKLRKGQEIKLTCVAKKGIGK--EHAKFGP 164 (212)
T ss_pred EEEEEccCCCCCcceEEHHHcccCC--ccc---cCCC--e-EEeCCCcEEEEECCCCEEEEEEEEECCCcC--CCCEeCC
Confidence 4566666665 68888886311 000 0011 2 3468999999888666 466654 3322222
Q ss_pred -------E--eCCCEEEEEecc--CC-HHHHHHHHHHcc
Q psy6080 150 -------V--KTGRIIIEVGGK--CS-YEEVLPYLRSCA 176 (240)
Q Consensus 150 -------V--k~G~iIfEi~g~--~~-~~~ak~aLk~aa 176 (240)
+ ...+.+|||..+ ++ .+...+|++.+.
T Consensus 165 V~~v~y~~~~~~d~li~~VeT~Gsi~p~~~l~~A~~iL~ 203 (212)
T cd07028 165 VAAIEFRYDPVADTYIMNVESVGSLPPDQVVVEAIKTLQ 203 (212)
T ss_pred ceEEEEEEEccCCEEEEEEEecCCcCHHHHHHHHHHHHH
Confidence 2 358899999974 22 333334444443
No 38
>PRK14430 acylphosphatase; Provisional
Probab=27.45 E-value=2.3e+02 Score=21.81 Aligned_cols=44 Identities=9% Similarity=0.107 Sum_probs=32.2
Q ss_pred ceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEecc
Q psy6080 143 IDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNED 189 (240)
Q Consensus 143 i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~~~ 189 (240)
+.+||--..-|+|-+++.| +.+.+.+.+..+ ..-|..+++..-+
T Consensus 32 l~G~VrN~~dGsVei~~qG--~~~~i~~f~~~l-~~gp~~a~V~~v~ 75 (92)
T PRK14430 32 LGGWVRNRADGTVEVMASG--TVRQLEALRAWM-EAGPPAAQVTKVE 75 (92)
T ss_pred CEEEEEECCCCcEEEEEEc--CHHHHHHHHHHH-HhCCCceEEEEEE
Confidence 7899999999999999999 334444444444 6777777776543
No 39
>PRK14427 acylphosphatase; Provisional
Probab=27.42 E-value=2e+02 Score=22.18 Aligned_cols=43 Identities=16% Similarity=0.078 Sum_probs=31.1
Q ss_pred ceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEec
Q psy6080 143 IDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNE 188 (240)
Q Consensus 143 i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~~ 188 (240)
+.+||.-..-|.|-.++.| +.+.+.+.+..+..- |-.+++.+-
T Consensus 34 l~G~V~N~~dGsVei~~qG--~~~~i~~f~~~l~~~-p~~a~V~~i 76 (94)
T PRK14427 34 LTGTVRNLDDGSVALVAEG--TGEQVEKLLDWLNSD-RAPGRVERV 76 (94)
T ss_pred CEEEEEECCCCeEEEEEEE--CHHHHHHHHHHHhhC-CCCcEEEEE
Confidence 6799999999999999999 334455555555544 767776543
No 40
>PRK14452 acylphosphatase; Provisional
Probab=27.19 E-value=1.8e+02 Score=23.25 Aligned_cols=44 Identities=18% Similarity=0.242 Sum_probs=34.7
Q ss_pred ceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEecc
Q psy6080 143 IDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNED 189 (240)
Q Consensus 143 i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~~~ 189 (240)
+.+||.-..-|.|-.++.|. .+ +.+.|..+..+-|-.+++..-+
T Consensus 48 L~G~V~N~~dGsVeI~~qG~--~~-~ve~F~~~l~~gP~~A~V~~v~ 91 (107)
T PRK14452 48 LSGWVRNLSDGSVEVQAEGP--PL-ALSELRAWCERGPPGARVKRVD 91 (107)
T ss_pred CEEEEEECCCCCEEEEEEcC--HH-HHHHHHHHHhcCCCCcEEEEEE
Confidence 78999999999999999993 33 5556677777788888886543
No 41
>PRK14423 acylphosphatase; Provisional
Probab=27.13 E-value=2.2e+02 Score=21.76 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=30.2
Q ss_pred ceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEe
Q psy6080 143 IDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCN 187 (240)
Q Consensus 143 i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~ 187 (240)
+.+||.-..-|+|-+++.| +.+.+.+.+..+. +-|-.+++..
T Consensus 33 l~G~V~N~~dG~Vei~~~G--~~~~i~~f~~~l~-~gp~~a~V~~ 74 (92)
T PRK14423 33 VDGWVRNLDDGRVEAVFEG--PRDAVEAMVEWCH-EGSPAAVVED 74 (92)
T ss_pred CEEEEEECCCCeEEEEEEE--CHHHHHHHHHHHH-hCCCceEEEE
Confidence 7899999999999999999 3344444444444 6677777654
No 42
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=26.46 E-value=81 Score=27.10 Aligned_cols=78 Identities=23% Similarity=0.337 Sum_probs=43.1
Q ss_pred HHHHHHHHhcccccccceEEEEEc-CCCCceecCCCcccCCCCCC-cceE------------EEEEEeCCCEEEEEeccC
Q psy6080 98 FETIRFAMMRKLDVKKMFAVWRVD-PPWLPVTKKGLGSRMGGGKG-SIDH------------YVTPVKTGRIIIEVGGKC 163 (240)
Q Consensus 98 lEaaR~~InR~L~kkk~~~iwirv-~P~~pvTkK~~gtRMGkGKG-~i~~------------~varVk~G~iIfEi~g~~ 163 (240)
-|++...+|+-.+-. +-..+.+ =|..|-+ +=.|=++| .++| -.-.|+.|+|++|+..
T Consensus 12 ~eTtEklLN~l~~i~--gI~R~vIhGp~LPk~-----VpyGPa~G~pv~h~~Rk~I~V~g~~veL~V~VGrI~le~~~-- 82 (150)
T TIGR03260 12 AETTEKLLNKLYDLD--GILRVVIHGQRLPKK-----VPYGPARGLPVNHPDRKTIRVKGEDVELRVQVGRIILELED-- 82 (150)
T ss_pred HHHHHHHHHHhhccC--CEEEEEEECCCCCCC-----CCCCcccCCCCCCCcceEEEECCEEEEEEEEEeEEEEEecC--
Confidence 367778888774321 2222222 3444433 23455555 2222 4567899999999985
Q ss_pred CHHHHHHHHHHcccc-CCcceEEE
Q psy6080 164 SYEEVLPYLRSCASK-MPFKCMPC 186 (240)
Q Consensus 164 ~~~~ak~aLk~aa~K-LP~k~kiV 186 (240)
+.+.+.++.+|.+ |||...+-
T Consensus 83 --~~~i~~I~eiC~e~~pF~y~i~ 104 (150)
T TIGR03260 83 --EDIVEEIEEICKEMLPFGYEVR 104 (150)
T ss_pred --HHHHHHHHHHHHhhCCCceEee
Confidence 2234444444443 78877764
No 43
>PRK14428 acylphosphatase; Provisional
Probab=26.10 E-value=2.2e+02 Score=22.29 Aligned_cols=42 Identities=19% Similarity=0.255 Sum_probs=31.5
Q ss_pred ceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEe
Q psy6080 143 IDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCN 187 (240)
Q Consensus 143 i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~ 187 (240)
+.+||.-..-|.|-.++.| +.+.+.+.+..+. ..|-.++|..
T Consensus 36 L~G~V~N~~dGsVei~~qG--~~~~i~~fi~~l~-~gP~~a~V~~ 77 (97)
T PRK14428 36 VQGWVRNCRDGSVELEAQG--SSDAVQALVEQLA-IGPRWSEVSH 77 (97)
T ss_pred CEEEEEECCCCEEEEEEEc--CHHHHHHHHHHHh-hCCCccEEEE
Confidence 6899999999999999999 3444555555554 7887777754
No 44
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=25.91 E-value=52 Score=23.54 Aligned_cols=29 Identities=34% Similarity=0.599 Sum_probs=23.3
Q ss_pred EeCCCEEEEEecc----CCHHHHHHHHHHcccc
Q psy6080 150 VKTGRIIIEVGGK----CSYEEVLPYLRSCASK 178 (240)
Q Consensus 150 Vk~G~iIfEi~g~----~~~~~ak~aLk~aa~K 178 (240)
+++|+.|+||.|. .+.+++..+++.+...
T Consensus 43 l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~ 75 (81)
T PF00595_consen 43 LKVGDRILEINGQSVRGMSHDEVVQLLKSASNP 75 (81)
T ss_dssp SSTTEEEEEETTEESTTSBHHHHHHHHHHSTSE
T ss_pred cchhhhhheeCCEeCCCCCHHHHHHHHHCCCCc
Confidence 6789999999983 4568888888888763
No 45
>PRK14448 acylphosphatase; Provisional
Probab=25.91 E-value=2.6e+02 Score=21.30 Aligned_cols=42 Identities=21% Similarity=0.320 Sum_probs=30.8
Q ss_pred ceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEe
Q psy6080 143 IDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCN 187 (240)
Q Consensus 143 i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~ 187 (240)
+.+||.-..-|+|-.++.| +.+.+.+.+..+ .+-|-.+.+..
T Consensus 30 l~G~V~N~~dG~Vei~~~G--~~~~v~~f~~~l-~~gp~~a~V~~ 71 (90)
T PRK14448 30 IKGYVKNRPDGSVEVVAVG--SDAQIAAFRDWL-QHGPPTAVVCN 71 (90)
T ss_pred CEEEEEECCCCCEEEEEEe--CHHHHHHHHHHH-HhCCCceEEEE
Confidence 7899999999999999999 334444444444 46777777654
No 46
>PRK14450 acylphosphatase; Provisional
Probab=25.85 E-value=2.5e+02 Score=21.31 Aligned_cols=44 Identities=14% Similarity=0.226 Sum_probs=30.4
Q ss_pred cceEEEEEEeCCC-EEEEEeccCCHHHHHHHHHHccccCCcceEEEec
Q psy6080 142 SIDHYVTPVKTGR-IIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNE 188 (240)
Q Consensus 142 ~i~~~varVk~G~-iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~~ 188 (240)
.+.+||.-..-|. |-+++.| +.+.+.+.+..+ .+-|-.+++..-
T Consensus 29 ~l~G~V~N~~dG~~Vei~~~G--~~~~v~~f~~~l-~~gp~~a~V~~v 73 (91)
T PRK14450 29 GLCGYAKNLANGNEVEVVAEG--DKDSLLEFLDLL-RSGPPRAEVKEV 73 (91)
T ss_pred CCEEEEEECCCCCEEEEEEEe--CHHHHHHHHHHH-hhCCCCcEEEEE
Confidence 3689999999996 9889998 334344444444 467877776543
No 47
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=25.37 E-value=1.9e+02 Score=27.76 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=14.9
Q ss_pred EEeCCCEEEEEeccCCHHHHHH
Q psy6080 149 PVKTGRIIIEVGGKCSYEEVLP 170 (240)
Q Consensus 149 rVk~G~iIfEi~g~~~~~~ak~ 170 (240)
+|++|++|++|.. -++..|..
T Consensus 145 ~VkkGq~La~l~s-pel~~aq~ 165 (409)
T PRK09783 145 KVQKGTPLLDLTI-PDWVEAQS 165 (409)
T ss_pred EECCCCEEEEEeC-HHHHHHHH
Confidence 5778999999986 34444443
No 48
>PRK14422 acylphosphatase; Provisional
Probab=25.00 E-value=2.6e+02 Score=21.53 Aligned_cols=43 Identities=12% Similarity=0.111 Sum_probs=30.5
Q ss_pred ceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEec
Q psy6080 143 IDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNE 188 (240)
Q Consensus 143 i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~~ 188 (240)
+.+||.-..-|+|-.++.| +.+.+.+.+..+..- |..+++..-
T Consensus 34 l~G~V~N~~dG~Vei~~~G--~~~~i~~f~~~l~~g-p~~a~V~~i 76 (93)
T PRK14422 34 LTGYAANLADGRVQVVAEG--PRAACEKLLQLLRGD-DTPGRVDKV 76 (93)
T ss_pred CEEEEEECCCCCEEEEEEc--CHHHHHHHHHHHHhC-CCCcEEEEE
Confidence 6799999999999999999 334455555555444 667776543
No 49
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=24.90 E-value=87 Score=27.00 Aligned_cols=78 Identities=27% Similarity=0.309 Sum_probs=44.2
Q ss_pred HHHHHHHhcccccccceEEEEEc-CCCCceecCCCcccCCCCCCcce-------------EEEEEEeCCCEEEEEeccCC
Q psy6080 99 ETIRFAMMRKLDVKKMFAVWRVD-PPWLPVTKKGLGSRMGGGKGSID-------------HYVTPVKTGRIIIEVGGKCS 164 (240)
Q Consensus 99 EaaR~~InR~L~kkk~~~iwirv-~P~~pvTkK~~gtRMGkGKG~i~-------------~~varVk~G~iIfEi~g~~~ 164 (240)
|++...+|+-.+- .+-..+.+ =|..|-| +=.|=++|.+. .---.|+.|+|++|+...
T Consensus 14 eTtEklLN~l~~i--~GI~R~vi~Gp~LPk~-----VpyGPa~G~pv~h~~Rk~I~V~g~~veL~V~vGri~lele~~-- 84 (153)
T PF02505_consen 14 ETTEKLLNELYSI--EGIRRVVIHGPRLPKT-----VPYGPARGTPVNHPDRKVINVGGEEVELTVKVGRIILELEDE-- 84 (153)
T ss_pred HHHHHHHHHHhcc--CCEEEEEEECCCCCCC-----CCCCCCCCCcCCCCcceEEEECCEEEEEEEEEeEEEEEecCc--
Confidence 5667777776642 22222222 3555543 23455556532 234578899999999872
Q ss_pred HHHHHHHHHHcccc-CCcceEEE
Q psy6080 165 YEEVLPYLRSCASK-MPFKCMPC 186 (240)
Q Consensus 165 ~~~ak~aLk~aa~K-LP~k~kiV 186 (240)
+.+.+.++.+|.+ |||...+-
T Consensus 85 -~~~ie~I~~iCee~lpf~y~i~ 106 (153)
T PF02505_consen 85 -EDVIEKIREICEEVLPFGYDIK 106 (153)
T ss_pred -HHHHHHHHHHHHHhCCCceEee
Confidence 3344445555543 68887764
No 50
>PRK14437 acylphosphatase; Provisional
Probab=23.85 E-value=2.7e+02 Score=22.28 Aligned_cols=44 Identities=14% Similarity=0.231 Sum_probs=32.2
Q ss_pred ceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEecc
Q psy6080 143 IDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNED 189 (240)
Q Consensus 143 i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~~~ 189 (240)
+.+||.-..-|+|-+++.| +.+.+.. |.....+-|..+++..-+
T Consensus 51 L~G~V~N~~dG~Vei~~qG--~~~~ie~-f~~~L~~gP~~a~V~~i~ 94 (109)
T PRK14437 51 LTGWVKNLSHGDVELVACG--ERDSIMI-LTEWLWEGPPQAAVSNVN 94 (109)
T ss_pred CeEEEEECCCCCEEEEEEE--CHHHHHH-HHHHHHhCCCceEEEEEE
Confidence 6899999999999999999 3343444 444445788888876543
No 51
>PRK14438 acylphosphatase; Provisional
Probab=23.02 E-value=2.7e+02 Score=21.24 Aligned_cols=43 Identities=14% Similarity=0.233 Sum_probs=31.1
Q ss_pred ceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEec
Q psy6080 143 IDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNE 188 (240)
Q Consensus 143 i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~~ 188 (240)
+.+||.-..-|.|-.++.| +.+.+.+.+..+ .+-|-.+++..-
T Consensus 31 l~G~V~N~~dG~Vei~~qG--~~~~i~~f~~~l-~~gp~~a~V~~v 73 (91)
T PRK14438 31 VSGWVKNLPNGSVQGCFEG--EETDVAALIDWC-HHGPSRARVSGV 73 (91)
T ss_pred CEEEEEECCCCEEEEEEEE--CHHHHHHHHHHH-hhCCCCcEEEEE
Confidence 7899999999999999999 334444444444 467777776543
No 52
>PRK14434 acylphosphatase; Provisional
Probab=21.66 E-value=3.8e+02 Score=20.58 Aligned_cols=46 Identities=11% Similarity=0.003 Sum_probs=33.9
Q ss_pred CcceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEe
Q psy6080 141 GSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCN 187 (240)
Q Consensus 141 G~i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~ 187 (240)
|.+.+||.-..-|.|-+++.| .+.+.+...+..+..-.|-.+++..
T Consensus 29 g~l~G~V~N~~dGsVei~~qG-~~~~~l~~f~~~l~~g~pp~a~V~~ 74 (92)
T PRK14434 29 GDIYGRVWNNDDGTVEILAQS-DDSAKLAKFIQEIRKGPSKWAKVTY 74 (92)
T ss_pred CCcEEEEEECCCCCEEEEEEc-CCHHHHHHHHHHHhcCCCCCEEEEE
Confidence 348899999999999999999 3334566666666666765676654
No 53
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=20.55 E-value=1.4e+02 Score=20.74 Aligned_cols=30 Identities=27% Similarity=0.461 Sum_probs=21.9
Q ss_pred EEEeCCCEEEEEecc-C---CHHHHHHHHHHccc
Q psy6080 148 TPVKTGRIIIEVGGK-C---SYEEVLPYLRSCAS 177 (240)
Q Consensus 148 arVk~G~iIfEi~g~-~---~~~~ak~aLk~aa~ 177 (240)
+.+++|++|++|.|. + +.+.+..+|+....
T Consensus 42 ~gl~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~ 75 (82)
T cd00992 42 GGLRVGDRILEVNGVSVEGLTHEEAVELLKNSGD 75 (82)
T ss_pred CCCCCCCEEEEECCEEcCccCHHHHHHHHHhCCC
Confidence 458899999999994 2 56677777765433
No 54
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=20.33 E-value=68 Score=28.22 Aligned_cols=33 Identities=39% Similarity=0.572 Sum_probs=24.0
Q ss_pred CCcccCCCCCCcceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHcc
Q psy6080 131 GLGSRMGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCA 176 (240)
Q Consensus 131 ~~gtRMGkGKG~i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa 176 (240)
+.|+|||. +-+.++|+.|..-...+.+||+..+
T Consensus 9 GrGtRmg~-------------~EKPlleV~GkpLI~~v~~al~~~~ 41 (177)
T COG2266 9 GRGTRMGR-------------PEKPLLEVCGKPLIDRVLEALRKIV 41 (177)
T ss_pred CcccccCC-------------CcCcchhhCCccHHHHHHHHHHhhc
Confidence 45677775 4578999999755677888888733
No 55
>PRK14439 acylphosphatase; Provisional
Probab=20.27 E-value=3.4e+02 Score=23.59 Aligned_cols=43 Identities=14% Similarity=0.137 Sum_probs=33.4
Q ss_pred ceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEe
Q psy6080 143 IDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCN 187 (240)
Q Consensus 143 i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~ 187 (240)
+.+||.-..-|.|-.++.| +.+.+.+.+..+....|-.+.|..
T Consensus 103 LtGwVrNl~DGsVEI~aQG--~ee~Ie~Fi~~L~~~gPp~A~Ve~ 145 (163)
T PRK14439 103 LTGYAKNLDDGSVEVVACG--EEGQVEKLMQWLKSGGPRSARVER 145 (163)
T ss_pred CEEEEEECCCCCEEEEEEc--CHHHHHHHHHHHhhCCCCCeEEEE
Confidence 7999999999999999999 445566666666665786666643
Done!