Query psy6080
Match_columns 240
No_of_seqs 176 out of 914
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 17:09:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6080.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6080hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8s_M 50S ribosomal protein L 100.0 5E-49 1.7E-53 324.2 13.8 134 51-190 2-135 (136)
2 3bbo_O Ribosomal protein L16; 100.0 3.7E-49 1.3E-53 324.6 7.2 133 51-188 2-134 (135)
3 2zjr_J 50S ribosomal protein L 100.0 6.2E-49 2.1E-53 325.7 3.0 136 51-191 3-138 (142)
4 2ftc_I Mitochondrial ribosomal 100.0 5.1E-45 1.7E-49 293.9 12.5 118 67-184 1-118 (118)
5 1ffk_F Ribosomal protein L10E; 100.0 5.6E-40 1.9E-44 275.7 14.2 147 30-189 4-153 (157)
6 1vq8_H 50S ribosomal protein L 100.0 2.3E-38 7.9E-43 268.8 16.2 149 31-189 5-167 (171)
7 2zkr_h 60S ribosomal protein L 100.0 4.3E-37 1.5E-41 268.6 15.7 149 31-189 8-169 (214)
8 3j21_N 50S ribosomal protein L 100.0 3.7E-37 1.3E-41 263.1 11.7 149 29-190 6-169 (181)
9 4a17_H RPL10, 60S ribosomal pr 100.0 3.9E-36 1.3E-40 262.5 15.0 150 31-190 8-170 (215)
10 3j0l_J Ribosomal protein L10; 100.0 4.2E-36 1.4E-40 262.9 8.8 151 30-190 5-168 (219)
11 2pa2_A 60S ribosomal protein L 100.0 1.3E-34 4.5E-39 241.7 9.1 109 81-189 17-138 (151)
12 3iz5_I 60S ribosomal protein L 100.0 5.5E-36 1.9E-40 262.7 -8.2 150 31-190 8-170 (224)
13 2fhm_A Probable acylphosphatas 36.2 81 0.0028 22.9 5.8 43 143-188 30-72 (91)
14 3e17_A Tight junction protein 36.1 20 0.00067 25.4 2.3 30 149-178 39-72 (88)
15 2hiy_A Hypothetical protein; C 35.2 24 0.00083 29.2 3.0 57 145-212 38-97 (183)
16 1urr_A CG18505 protein; acylph 35.2 81 0.0028 23.4 5.7 44 143-188 39-82 (102)
17 4e34_A Golgi-associated PDZ an 34.1 22 0.00074 24.6 2.2 31 149-179 46-80 (87)
18 2vh7_A Acylphosphatase-1; hydr 32.5 78 0.0027 23.4 5.2 43 143-187 36-78 (99)
19 1y7n_A Amyloid beta A4 precurs 29.6 34 0.0012 24.5 2.6 28 150-177 49-80 (90)
20 3gge_A PDZ domain-containing p 29.3 15 0.00052 27.6 0.7 40 149-188 46-89 (95)
21 1w2i_A Acylphosphatase; hydrol 28.9 1.2E+02 0.004 22.1 5.5 42 143-187 32-73 (91)
22 1ulr_A Putative acylphosphatas 28.9 1.2E+02 0.004 21.9 5.5 43 143-188 30-72 (88)
23 2ejy_A 55 kDa erythrocyte memb 28.0 29 0.00099 25.4 2.1 27 150-176 55-85 (97)
24 2lob_A Golgi-associated PDZ an 32.0 14 0.00049 27.6 0.0 34 148-181 70-107 (112)
25 2k32_A A; NMR {Campylobacter j 25.9 78 0.0027 23.2 4.2 14 149-162 22-35 (116)
26 1kwa_A Hcask/LIN-2 protein; PD 25.9 60 0.0021 22.7 3.4 36 148-185 42-81 (88)
27 2e7k_A Maguk P55 subfamily mem 25.8 61 0.0021 22.8 3.4 29 149-177 47-78 (91)
28 3o46_A Maguk P55 subfamily mem 25.5 41 0.0014 23.5 2.4 29 149-177 46-78 (93)
29 2fcf_A Multiple PDZ domain pro 23.6 34 0.0012 24.3 1.7 27 150-176 58-88 (103)
30 2bjd_A Acylphosphatase; hypert 23.6 1.5E+02 0.005 22.1 5.4 42 143-187 42-83 (101)
31 3cyy_A Tight junction protein 22.8 47 0.0016 22.9 2.3 27 150-176 42-72 (92)
32 2iwq_A Multiple PDZ domain pro 22.6 39 0.0013 25.5 1.9 28 150-177 78-109 (123)
33 2gv1_A Probable acylphosphatas 22.4 1.4E+02 0.0049 21.6 5.0 42 143-187 32-74 (92)
34 2db5_A INAD-like protein; PDZ 22.1 48 0.0016 24.8 2.3 27 150-176 73-104 (128)
35 2lta_A De novo designed protei 27.4 19 0.00066 27.3 0.0 48 131-178 53-100 (110)
36 2jil_A GRIP1 protein, glutamat 21.4 55 0.0019 22.9 2.4 25 150-174 51-79 (97)
37 3trg_A Acylphosphatase; fatty 21.3 1.9E+02 0.0064 21.3 5.5 43 143-188 40-82 (98)
38 1zpv_A ACT domain protein; str 21.3 64 0.0022 22.3 2.7 41 155-195 49-89 (91)
39 3lnn_A Membrane fusion protein 21.1 1.6E+02 0.0055 25.4 5.9 24 149-173 78-101 (359)
40 2o2t_A Multiple PDZ domain pro 20.9 56 0.0019 23.8 2.5 27 150-176 68-99 (117)
41 2pa1_A PDZ and LIM domain prot 20.8 1.1E+02 0.0037 20.9 3.9 27 150-176 44-74 (87)
42 2rcz_A Tight junction protein 20.7 61 0.0021 21.5 2.5 26 150-175 40-69 (81)
43 2kl1_A YLBL protein; structure 20.6 1.4E+02 0.0049 21.0 4.6 27 149-175 21-49 (94)
No 1
>3r8s_M 50S ribosomal protein L16; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ...
Probab=100.00 E-value=5e-49 Score=324.19 Aligned_cols=134 Identities=27% Similarity=0.398 Sum_probs=129.2
Q ss_pred CCCCCCCCccccCCCCcccCcccCccEEEEEeEEEEEeeCcccchhhHHHHHHHHhcccccccceEEEEEcCCCCceecC
Q psy6080 51 TFIYNHKTPRTTKRLDLLRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKK 130 (240)
Q Consensus 51 ~~pk~~K~~K~~K~l~~~rG~~~~~~~L~~G~yGL~ale~G~It~~qlEaaR~~InR~L~kkk~~~iwirv~P~~pvTkK 130 (240)
+.|+++||+|+||| +++|.+ ++|+|.||+|||+|+|+|+||++||||||++|+|+|+ +++++|||+|||+|||+|
T Consensus 2 l~Pk~~k~rK~~kg--r~~g~~-~g~~l~fG~~gL~a~e~~~it~~qiEaaR~ai~R~lk--r~gk~wirv~P~~pvt~k 76 (136)
T 3r8s_M 2 LQPKRTKFRKMHKG--RNRGLA-QGTDVSFGSFGLKAVGRGRLTARQIEAARRAMTRAVK--RQGKIWIRVFPDKPITEK 76 (136)
T ss_dssp CCCSSCSSSSCCCC--CCCSCC-SCCSCCSSSEEEEECSCEEEEHHHHHHHHHHHHHTTC--SCSEEEECCCCCEEEEEC
T ss_pred CCCCCCCcCcCcCC--CCCCcC-CCceEecceEEEEECcCCeECHHHHHHHHHHHHHhhh--cCcEEEEEECCCCceEeC
Confidence 35999999999997 899999 9999999999999999999999999999999999995 578999999999999999
Q ss_pred CCcccCCCCCCcceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEecch
Q psy6080 131 GLGSRMGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNEDI 190 (240)
Q Consensus 131 ~~gtRMGkGKG~i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~~~~ 190 (240)
|+++|||+|||+|+||||+|++|+||||++| ++++.|++||++|++|||++|+||+++.
T Consensus 77 ~~etRMGkGKG~~~~wva~Vk~G~ilfEi~g-~~~~~A~eAlr~a~~KLP~~~kiv~~~~ 135 (136)
T 3r8s_M 77 PLAVRMGKGKGNVEYWVALIQPGKVLYEMDG-VPEELAREAFKLAAAKLPIKTTFVTKTV 135 (136)
T ss_dssp CSSCCSCSSCCEEEEEEEEECTTCEEEEEES-SCHHHHHHHHHHHHTTCSSCEEEEECCC
T ss_pred chhccCCCCCCCCCEEEEEECCCCEEEEEeC-CCHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence 9999999999999999999999999999999 7999999999999999999999999863
No 2
>3bbo_O Ribosomal protein L16; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2
Probab=100.00 E-value=3.7e-49 Score=324.60 Aligned_cols=133 Identities=28% Similarity=0.330 Sum_probs=129.1
Q ss_pred CCCCCCCCccccCCCCcccCcccCccEEEEEeEEEEEeeCcccchhhHHHHHHHHhcccccccceEEEEEcCCCCceecC
Q psy6080 51 TFIYNHKTPRTTKRLDLLRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKK 130 (240)
Q Consensus 51 ~~pk~~K~~K~~K~l~~~rG~~~~~~~L~~G~yGL~ale~G~It~~qlEaaR~~InR~L~kkk~~~iwirv~P~~pvTkK 130 (240)
+.|+++||+|+||+ +++|.+.++++|.||+|||+|+|+|+||++||||||++|+|+| +++|++|||+|||+|||+|
T Consensus 2 l~Pkr~k~rK~~kg--r~~g~~~~g~~l~fG~~gL~a~e~~~it~~qiEaaR~ai~R~l--k~~~k~wirv~P~~pvt~k 77 (135)
T 3bbo_O 2 LSPKRTRFRKQHRG--RMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNA--RRGGKIWVRIFPDKPVTVR 77 (135)
T ss_dssp CCCCCCCCCCCCCC--CCCCTTSCCCCCCSSSEEEEESSCCCCCHHHHHHHHHHHHHTT--CSSSCCCCCCCCCSCCCCC
T ss_pred CCCCcCccccCcCC--CCCCccCCCCEEeeceEEEEECcCCccCHHHHHHHHHHHHHHh--hhCcEEEEEeCCCcccEec
Confidence 36999999999997 8999999999999999999999999999999999999999999 5789999999999999999
Q ss_pred CCcccCCCCCCcceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEec
Q psy6080 131 GLGSRMGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNE 188 (240)
Q Consensus 131 ~~gtRMGkGKG~i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~~ 188 (240)
|+|+|||+|||+|+||||+|++|+||||++| ++++.|++||++|++|||++|+||++
T Consensus 78 ~~e~RMG~GKG~~~~wva~Vk~G~ilfEi~g-v~~~~A~eAlr~a~~KLP~~~kiv~~ 134 (135)
T 3bbo_O 78 PAETRMGSGKGSPEYWVAVVKPGRILYEISG-VAENIARRAVAIAASKMPIRTQFIIS 134 (135)
T ss_dssp CSSCCSSCCCSCSSCCCCCCCTTCEEEEECS-SCTTHHHHHHHHHHHHCSSCEEEECC
T ss_pred cccccccccCCCceEEEEEECCCCEEEEEec-CCHHHHHHHHHHHHhhCCCcEEEEec
Confidence 9999999999999999999999999999999 89999999999999999999999975
No 3
>2zjr_J 50S ribosomal protein L16; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.41.4.2 PDB: 1sm1_K* 2zjp_J* 2zjq_J 1nkw_K 3cf5_J* 3dll_J* 3pio_J* 1njm_K* 1nwx_K* 1njp_K* 1xbp_K* 1y69_K 1nwy_K* 3pip_J* 1pnu_K 1pny_K 1vor_N 1vou_N 1vow_N 1voy_N ...
Probab=100.00 E-value=6.2e-49 Score=325.67 Aligned_cols=136 Identities=26% Similarity=0.417 Sum_probs=129.0
Q ss_pred CCCCCCCCccccCCCCcccCcccCccEEEEEeEEEEEeeCcccchhhHHHHHHHHhcccccccceEEEEEcCCCCceecC
Q psy6080 51 TFIYNHKTPRTTKRLDLLRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKK 130 (240)
Q Consensus 51 ~~pk~~K~~K~~K~l~~~rG~~~~~~~L~~G~yGL~ale~G~It~~qlEaaR~~InR~L~kkk~~~iwirv~P~~pvTkK 130 (240)
+.|+++||+|+||+ +++|.+.++++|.||+|||+|+|+|+||++||||||++|+|+|+ ++|++|||+|||+|||+|
T Consensus 3 l~Pkr~k~rK~~kg--r~~g~~~~g~~l~fG~~gL~a~e~~~it~~qiEAaR~ai~R~lk--r~gk~wirv~P~~pvt~K 78 (142)
T 2zjr_J 3 LLPKRTKFRKQFRG--RMTGDAKGGDYVAFGDYGLIAMEPAWIKSNQIEACRIVMSRHFR--RGGKIYIRIFPDKPVTKK 78 (142)
T ss_dssp ---CCCSSCCCCCC--CCCCSCSSCCSSSSSSCEEEECSCBCCBHHHHHHHHHHHHHHCS--SCCCCCCCCCCCCEECCC
T ss_pred CCCCcCccccCCCC--CcCCcccCCcceecceEEEEECcCCeECHHHHHHHHHHHHHHhh--hCcEEEEEeCCCcceEcC
Confidence 46999999999997 89999999999999999999999999999999999999999995 589999999999999999
Q ss_pred CCcccCCCCCCcceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEecchh
Q psy6080 131 GLGSRMGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNEDIL 191 (240)
Q Consensus 131 ~~gtRMGkGKG~i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~~~~l 191 (240)
|+++|||+|||+|+||||+|++|+||||++| ++++.|++||++|++|||++|+||+++++
T Consensus 79 p~e~RMG~GKG~~~~wva~Vk~G~ilfEi~g-v~~~~A~eAlr~A~~KLP~~~kiv~~~~~ 138 (142)
T 2zjr_J 79 PAETRMGKGKGAVEYWVSVVKPGRVMFEVAG-VTEEQAKEAFRLAGHKLPIQTKMVKREVY 138 (142)
T ss_dssp SSSCCCSSSCCTTSEEBCCBCTTEEEECCCS-SCSTTTTTHHHHHHHTCSSCEEEECSCCC
T ss_pred cccccccccCCCCCEEEEEECCCCEEEEEeC-CCHHHHHHHHHHHHhhCCCcEEEEEeccc
Confidence 9999999999999999999999999999999 89999999999999999999999998743
No 4
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=100.00 E-value=5.1e-45 Score=293.87 Aligned_cols=118 Identities=47% Similarity=0.971 Sum_probs=113.7
Q ss_pred cccCcccCccEEEEEeEEEEEeeCcccchhhHHHHHHHHhcccccccceEEEEEcCCCCceecCCCcccCCCCCCcceEE
Q psy6080 67 LLRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKKGLGSRMGGGKGSIDHY 146 (240)
Q Consensus 67 ~~rG~~~~~~~L~~G~yGL~ale~G~It~~qlEaaR~~InR~L~kkk~~~iwirv~P~~pvTkK~~gtRMGkGKG~i~~~ 146 (240)
+++|.+.++++|.||+|||+|+|+|+||++||||||++|+|+|+++++|++|||+|||+|||+||+|+|||+|||+|+||
T Consensus 1 ~~~g~~~~g~~l~fG~~gL~a~e~~~it~~qiEaaR~ai~r~l~~k~~~~~wirv~P~~pvt~k~~e~RMG~GKG~~~~w 80 (118)
T 2ftc_I 1 DIRGPSTEATEFTEGNFAILALGGGYLHWGHFEMMRLTINRSMDPKNMFAIWRVPAPFKPITRKSVGHRMGGGKGAIDHY 80 (118)
T ss_pred CccccccCCCeEeeeeEEEEECcCCccCHHHHHHHHHHHHheeeccCCeEEEEEECCCcccCcCchhcccccCCCCccEE
Confidence 46899999999999999999999999999999999999999996668899999999999999999999999999999999
Q ss_pred EEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceE
Q psy6080 147 VTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCM 184 (240)
Q Consensus 147 varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~k 184 (240)
||+|++|+||||+.|+++++.|++||++|++|||++|+
T Consensus 81 va~Vk~G~ilfEi~g~~~~~~a~eAlr~a~~KlP~~~~ 118 (118)
T 2ftc_I 81 VTPVKAGRLVVEMGGRCEFEEVQGFLDQVAHKLPFAAK 118 (118)
T ss_pred EEEECCCCEEEEEeccCCHHHHHHHHHHHHhhCCCCCC
Confidence 99999999999999988999999999999999999984
No 5
>1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1jj2_H 1k73_J* 1k8a_J* 1k9m_J* 1kc8_J* 1kd1_J* 1kqs_H* 1m1k_J* 1m90_J* 1n8r_J* 1nji_J* 1q7y_J* 1q81_J* 1q82_J* 1q86_J* 1qvf_H 1qvg_H 1w2b_H 3cxc_H* 1giy_P ...
Probab=100.00 E-value=5.6e-40 Score=275.65 Aligned_cols=147 Identities=11% Similarity=-0.024 Sum_probs=130.2
Q ss_pred CCCCCccCcCCCCCccCCCCCCCCCCCCCccccCCCCcccCcccCccEEEEEeEEEEEeeCcccchhhHHHHHHHHhccc
Q psy6080 30 PNYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKL 109 (240)
Q Consensus 30 ~~y~~~~~p~~~kl~~~~~~P~~pk~~K~~K~~K~l~~~rG~~~~~~~L~~G~yGL~ale~G~It~~qlEaaR~~InR~L 109 (240)
--|+.+.-|+|||.+|+.+||. |+.+.|- .| +.+.. .++- -..||+|+|.|+||++||||||+++||+|
T Consensus 4 rcyr~~~~~pY~r~~y~~gvP~-~kI~~fd---~G--~~~a~----~~fp-~~~~L~a~E~~~Its~qIEAaRia~nR~l 72 (157)
T 1ffk_F 4 AHFRNSIKPAYTRREYISGIPG-KGIAQFK---MG--NNGAG----PTYP-AQVENVVEKPVQIRHNALEAARNAANRFV 72 (157)
T ss_pred cccccCCCCCCchhhhcCCCCC-CceEEEe---CC--CCCcc----ccCC-EEEEEEECccccCCHHHHHHHHHHHHHHH
Confidence 3588899999999999999999 9988887 65 33221 1233 46799999999999999999999999999
Q ss_pred cc---ccceEEEEEcCCCCceecCCCcccCCCCCCcceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEE
Q psy6080 110 DV---KKMFAVWRVDPPWLPVTKKGLGSRMGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPC 186 (240)
Q Consensus 110 ~k---kk~~~iwirv~P~~pvTkK~~gtRMGkGKG~i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV 186 (240)
++ +.+|++|||+|||+|||+|+ ++|||+|||++++|||+|++|+||||+.| ++.+.|++||++|++|||++|+||
T Consensus 73 kr~~Gk~~fklwIRifP~~~it~kp-etrMg~gkG~p~~wvArVk~G~ilfei~g-v~~~~A~eAlr~A~~KlP~ktkiv 150 (157)
T 1ffk_F 73 QNSGAAANYKFRIRKFPFHVIREQD-GDGMRAPFGKSVGTAARSHGANHDFIAWV-NPDPAVEFAWRRAYMKVTPTVNID 150 (157)
T ss_pred HhhcCCcccEEEEEECCCeeeEecc-cccccCCCCCccEEEEEEcCCCEEEEEec-cCHHHHHHHHHHHHhhCCCcEEEE
Confidence 75 23579999999999999999 99999999999999999999999999999 678899999999999999999999
Q ss_pred ecc
Q psy6080 187 NED 189 (240)
Q Consensus 187 ~~~ 189 (240)
...
T Consensus 151 ~~~ 153 (157)
T 1ffk_F 151 SSP 153 (157)
T ss_pred Eec
Confidence 753
No 6
>1vq8_H 50S ribosomal protein L10E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1vq4_H* 1vq5_H* 1vq6_H* 1vq7_H* 1s72_H* 1vq9_H* 1vqk_H* 1vql_H* 1vqm_H* 1vqn_H* 1vqo_H* 1vqp_H* 2otj_H* 2otl_H* 2qa4_H* 2qex_H* 1yhq_H* 1yi2_H* 1yij_H* 1yit_H* ...
Probab=100.00 E-value=2.3e-38 Score=268.82 Aligned_cols=149 Identities=16% Similarity=0.133 Sum_probs=126.6
Q ss_pred CCCCccCcCCCCCccCCCCCCCCCCCCCccccCCCCcccCcccCccEEEEEeEEEEEeeCcccchhhHHHHHHHHhcccc
Q psy6080 31 NYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLD 110 (240)
Q Consensus 31 ~y~~~~~p~~~kl~~~~~~P~~pk~~K~~K~~K~l~~~rG~~~~~~~L~~G~yGL~ale~G~It~~qlEaaR~~InR~L~ 110 (240)
-|+.+.-|+|||.+|+.+||. |+.+.|- .| +.+.... ++. -..||+|+|.|+||++||||||+++||+|+
T Consensus 5 cYr~~~~~~Y~r~~y~~gvP~-~kI~~fd---~G--~~~~~~~---~fp-~~~~L~a~E~~~Its~qIEAaRia~~R~lk 74 (171)
T 1vq8_H 5 MYRDIDKPAYTRREYITGIPG-SKIAQHK---MG--RKQKDAD---DYP-VQISLIVEETVQLRHGSLEASRLSANRHLI 74 (171)
T ss_dssp GTSSCCSCCCCCTTTCCCCCC-CCCCCSB---CS--CTTSCST---TCS-EEEEEEESSCEEEEHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCCchhhhcCCCCC-CcEEEEe---cC--CCcCCcc---cCC-EEEEEEECcccccCHHHHHHHHHHHHHHhH
Confidence 488899999999999999999 9999887 65 4332221 122 457999999999999999999999999997
Q ss_pred c---c-cceEEEEEcCCCCce------ecCCCc---ccCCCCCCcceEEEEEEeCCCEEEEEecc-CCHHHHHHHHHHcc
Q psy6080 111 V---K-KMFAVWRVDPPWLPV------TKKGLG---SRMGGGKGSIDHYVTPVKTGRIIIEVGGK-CSYEEVLPYLRSCA 176 (240)
Q Consensus 111 k---k-k~~~iwirv~P~~pv------TkK~~g---tRMGkGKG~i~~~varVk~G~iIfEi~g~-~~~~~ak~aLk~aa 176 (240)
+ + .+|++|||+|||+|| |.+|.+ +|||+|||++++|||+|++|+||||+.|. ++++.|++||++|+
T Consensus 75 k~~Gk~~~f~iwIRifP~~~ir~nkm~T~kgAdRlq~rMg~gkG~p~~wvArVk~G~ilfei~~~~v~~~~A~eAlr~A~ 154 (171)
T 1vq8_H 75 KELGEEGDYKMTLRKFPHQVLRENKQATGAGADRVSDGMRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAY 154 (171)
T ss_dssp HHHCTTCSCEEEECCCCCEEEEECC-----------CCSTTCCCEEEEEEEEECTTCEEEEEEECTTTHHHHHHHHHHHG
T ss_pred HhcCCCCCcEEEEEEcCCeeEeccccccccchhhhhccccccCCCCcEEEEEECCCCEEEEEECcCCCHHHHHHHHHHHH
Confidence 5 3 678899999999999 777777 99999999999999999999999999995 89999999999999
Q ss_pred ccCCcceEEEecc
Q psy6080 177 SKMPFKCMPCNED 189 (240)
Q Consensus 177 ~KLP~k~kiV~~~ 189 (240)
+|||++|+||...
T Consensus 155 ~KLP~ktkiv~~~ 167 (171)
T 1vq8_H 155 NKITPSCRIDSSP 167 (171)
T ss_dssp GGSSSCEEEEECS
T ss_pred hhCCCcEEEEEec
Confidence 9999999999753
No 7
>2zkr_h 60S ribosomal protein L10; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=4.3e-37 Score=268.56 Aligned_cols=149 Identities=17% Similarity=0.146 Sum_probs=130.8
Q ss_pred CCCCccCcCCCCCccCCCCCCCCCCCCCccccCCCCcccCcccCccEEEEEeEEEEEeeCcccchhhHHHHHHHHhcccc
Q psy6080 31 NYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLD 110 (240)
Q Consensus 31 ~y~~~~~p~~~kl~~~~~~P~~pk~~K~~K~~K~l~~~rG~~~~~~~L~~G~yGL~ale~G~It~~qlEaaR~~InR~L~ 110 (240)
-|+.+.-|+|||.+|+.+||. |+.+.|- .| +.+.... ++. -.+||+|+|.|+||++||||||+++||+|+
T Consensus 8 cYr~~~~~pY~r~~y~~gvP~-~kI~~fd---~G--~~~a~~~---~fp-~~~gL~a~E~~~Its~qIEAARia~nR~lk 77 (214)
T 2zkr_h 8 CYRYCKNKPYPKSRFCRGVPD-AKIRIFD---LG--RKKAKVD---EFP-LCGHMVSDEYEQLSSEALEAARICANKYMV 77 (214)
T ss_dssp GTSSCCSCCCCCTTTCCCCCC-CCCCSSC---EE--CSSSCST---TCS-EEEEEEESSCEEEEHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCCChhhhcCCCCC-ccEEEEe---CC--CCcCCcc---cCC-EEEEEEECcccccCHHHHHHHHHHHHHHHh
Confidence 488899999999999999999 9998887 54 3322211 123 567999999999999999999999999997
Q ss_pred c---ccceEEEEEcCCCCcee------cCCCc---ccCCCCCCcceEEEEEEeCCCEEEEEecc-CCHHHHHHHHHHccc
Q psy6080 111 V---KKMFAVWRVDPPWLPVT------KKGLG---SRMGGGKGSIDHYVTPVKTGRIIIEVGGK-CSYEEVLPYLRSCAS 177 (240)
Q Consensus 111 k---kk~~~iwirv~P~~pvT------kK~~g---tRMGkGKG~i~~~varVk~G~iIfEi~g~-~~~~~ak~aLk~aa~ 177 (240)
+ +.+|++|||+|||+||| .+|.+ +|||+|||++++|||+|++|+|||||.|. ++++.|++||++|++
T Consensus 78 r~~Gk~~fklwIRifP~~~it~nkmls~kgAdRlqtgMg~gkGkp~~wvArVkpGqilfEi~~~~v~~~~A~eALr~A~~ 157 (214)
T 2zkr_h 78 KSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVAKVHIGQVIMSIRTKLQNKEHVIEALRRAKF 157 (214)
T ss_dssp HHHCTTCCEEEECCCCCEEEEECTTTCCSSCSSTTSSSTTCCCEEEEEEEEECTTCEEEEEEECSTTHHHHHHHHHHHHH
T ss_pred hccCCcCcEEEEEECCCceeecccccccCCchhhcccccCCCCCCcEEEEEECCCCEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 5 24679999999999999 66666 99999999999999999999999999995 899999999999999
Q ss_pred cCCcceEEEecc
Q psy6080 178 KMPFKCMPCNED 189 (240)
Q Consensus 178 KLP~k~kiV~~~ 189 (240)
|||++|+||...
T Consensus 158 KLP~ktkiv~~~ 169 (214)
T 2zkr_h 158 KFPGRQKIHISK 169 (214)
T ss_dssp TSSSCEEEEECC
T ss_pred hCCCcEEEEEec
Confidence 999999999766
No 8
>3j21_N 50S ribosomal protein L10E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=3.7e-37 Score=263.06 Aligned_cols=149 Identities=14% Similarity=0.092 Sum_probs=132.7
Q ss_pred CCCCCCccCcCCCCCccCCCCCCCCCCCCCccccCCCCcccCcccCccEEEEEeEEEEEeeCcccchhhHHHHHHHHhcc
Q psy6080 29 PPNYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRK 108 (240)
Q Consensus 29 ~~~y~~~~~p~~~kl~~~~~~P~~pk~~K~~K~~K~l~~~rG~~~~~~~L~~G~yGL~ale~G~It~~qlEaaR~~InR~ 108 (240)
---|+.+.-|+|||.+|+.+||. |+.+.|- .| +-+. ++. ....|+|+|.++||++||||||+++||+
T Consensus 6 arcYr~~~~~pY~r~~y~~GvP~-~KI~~fd---~G--~k~a------~fp-~~~~L~a~E~~qIss~qiEAARia~nRy 72 (181)
T 3j21_N 6 AKIDRYVDKPAYTRREYIRGAPG-PKITIFD---MG--NPAG------DFE-FEVSLHTAEPVQIRQNALEAARQQVNRY 72 (181)
T ss_dssp SSSTTCSSSCCCCCTTTSSCCCC-CSCCCCE---EE--SCTT------SCC-EEEEEEECSCEEEEHHHHHHHHHHHHHH
T ss_pred HHhhccCCCCCCchhhhcCCCCC-CeEEEEe---cC--cccC------CCC-EEEEEEEcccccccHHHHHHHHHHHHHH
Confidence 34588999999999999999999 9999887 43 2222 223 5678999999999999999999999999
Q ss_pred ccc---ccceEEEEEcCCCCceecCC---------CcccCCCCCCcceEEEEEEeCCCEEEEEecc-CCHHHHHHHHHHc
Q psy6080 109 LDV---KKMFAVWRVDPPWLPVTKKG---------LGSRMGGGKGSIDHYVTPVKTGRIIIEVGGK-CSYEEVLPYLRSC 175 (240)
Q Consensus 109 L~k---kk~~~iwirv~P~~pvTkK~---------~gtRMGkGKG~i~~~varVk~G~iIfEi~g~-~~~~~ak~aLk~a 175 (240)
|.+ +.+|++|||+|||+|||+|+ +++|||+|||++++|||+|++|+||||+.|. ++++.|++||++|
T Consensus 73 l~r~~Gk~~fhl~IRifP~~vir~nkmls~agAdRl~~gM~~~kGkp~gwvArVk~Gqilfei~~~~~~~~~A~eAlr~A 152 (181)
T 3j21_N 73 LQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKKDQKILSIRVNRQHLKFAIEGARRA 152 (181)
T ss_dssp HHHHHCTTSCEEECCCCCCCCCCCCCCCCCCTTCCSCCSSSSCSCCCCCCEEEECSSEEEEEEEECSTTHHHHHHHHHHH
T ss_pred HHHhcCCccceEEEEECCCceeeecccccccchhhhccccccccCCcceEEEEEcCCCEEEEEEecCCCHHHHHHHHHHH
Confidence 976 56788999999999999998 4999999999999999999999999999996 6899999999999
Q ss_pred cccCCcce--EEEecch
Q psy6080 176 ASKMPFKC--MPCNEDI 190 (240)
Q Consensus 176 a~KLP~k~--kiV~~~~ 190 (240)
++|||++| +||..+.
T Consensus 153 ~~KlP~~t~~kiv~~~~ 169 (181)
T 3j21_N 153 AMKFPCKCYYRIYDKEG 169 (181)
T ss_dssp HHSSSSCCSSCEEECCC
T ss_pred hccCCCCeeeEEEEecc
Confidence 99999999 9997754
No 9
>4a17_H RPL10, 60S ribosomal protein L10; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_H 4a1c_H 4a1e_H
Probab=100.00 E-value=3.9e-36 Score=262.53 Aligned_cols=150 Identities=17% Similarity=0.144 Sum_probs=130.2
Q ss_pred CCCCccCcCCCCCccCCCCCCCCCCCCCccccCCCCcccCcccCccEEEEEeEEEEEeeCcccchhhHHHHHHHHhcccc
Q psy6080 31 NYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLD 110 (240)
Q Consensus 31 ~y~~~~~p~~~kl~~~~~~P~~pk~~K~~K~~K~l~~~rG~~~~~~~L~~G~yGL~ale~G~It~~qlEaaR~~InR~L~ 110 (240)
-|+.+.-|+|||.+|+.+||. |+.+.|- .| +-+... .++- ....|+|+|.++||++||||||+++||+|.
T Consensus 8 cYr~~~~~pY~r~~y~~GvP~-~KI~~fd---~G--~kka~~---~~fp-~~~~L~a~E~~qIss~qIEAARia~nRyl~ 77 (215)
T 4a17_H 8 CYRQPKGKPYPKSRYNRGVPD-ARIRIYD---SG--RKKATV---EEFP-YVVHIVSDEKEQITSEALEAARIAANKNLI 77 (215)
T ss_dssp GTSSCCSCCCCSCTTCCSCCC-CSCCCCE---EE--CTTCCT---TTCC-EEEEEEECSCEEEEHHHHHHHHHHHHHHHH
T ss_pred hhccccCCCCchhhccCCCCC-CcEEEEe---CC--CCcCCc---ccCC-eeEEEEECccccCcHHHHHHHHHHHHHHHH
Confidence 488899999999999999999 9999886 43 222111 1223 457899999999999999999999999997
Q ss_pred c---ccceEEEEEcCCCCceecCCC---------cccCCCCCCcceEEEEEEeCCCEEEEEecc-CCHHHHHHHHHHccc
Q psy6080 111 V---KKMFAVWRVDPPWLPVTKKGL---------GSRMGGGKGSIDHYVTPVKTGRIIIEVGGK-CSYEEVLPYLRSCAS 177 (240)
Q Consensus 111 k---kk~~~iwirv~P~~pvTkK~~---------gtRMGkGKG~i~~~varVk~G~iIfEi~g~-~~~~~ak~aLk~aa~ 177 (240)
+ +.+|++|||+|||+|||+|++ ++|||+|||++++|||+|++|+|||||.|. .+++.|++||++|++
T Consensus 78 r~~GK~~fhl~IRifP~~vir~nkmls~agAdRl~tgM~~akGkp~gwvArVk~Gqilfei~g~~~~~~~A~eALr~A~~ 157 (215)
T 4a17_H 78 KFISKDAFHLRCRVHPWHVLRINKMLSCAGADRLQSGMRGAFGKALGKAARVDIGSILFSVRVKEPHVKYAIDALTRAKA 157 (215)
T ss_dssp HHSCGGGCEEEECCCCCEEEEECC-----------CTTSCCCCEEEEEEEEECTTCEEEEEEECGGGHHHHHHHHHHHGG
T ss_pred HhcCCccceEEEEECCCceeeecccccccchhhhhccccCCCCCCCeEEEEEcCCCEEEEEEecCCCHHHHHHHHHHHhh
Confidence 6 567889999999999999997 999999999999999999999999999995 679999999999999
Q ss_pred cCCcceEEEecch
Q psy6080 178 KMPFKCMPCNEDI 190 (240)
Q Consensus 178 KLP~k~kiV~~~~ 190 (240)
|||++|+||...-
T Consensus 158 KlP~~tkiv~~~k 170 (215)
T 4a17_H 158 KFPGRQKVVTSQK 170 (215)
T ss_dssp GSSSCEEEEEESB
T ss_pred hCCCceEEEEccc
Confidence 9999999997654
No 10
>3j0l_J Ribosomal protein L10; mammalia, translation, elongation cycle, tRNA, ribosome; 9.80A {Oryctolagus cuniculus} PDB: 3j0q_J 3izc_I 3izs_I 3o58_J 3o5h_J 3u5e_I 3u5i_I 4b6a_I
Probab=100.00 E-value=4.2e-36 Score=262.91 Aligned_cols=151 Identities=16% Similarity=0.126 Sum_probs=130.7
Q ss_pred CCCCCccCcCCCCCccCCCCCCCCCCCCCccccCCCCcccCcccCccEEEEEeEEEEEeeCcccchhhHHHHHHHHhccc
Q psy6080 30 PNYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKL 109 (240)
Q Consensus 30 ~~y~~~~~p~~~kl~~~~~~P~~pk~~K~~K~~K~l~~~rG~~~~~~~L~~G~yGL~ale~G~It~~qlEaaR~~InR~L 109 (240)
--|+.+.-|+|||.+|+.+||. |+.+.|- .| +-+... .++- ....|+|+|.++||++||||||+++||+|
T Consensus 5 rcYr~~~~~pY~r~~y~~GvP~-~KI~~fd---~G--~kka~~---~efp-~~~~L~a~E~~qIss~qIEAARia~nRyl 74 (219)
T 3j0l_J 5 RCYRYQKNKPYPKSRYNRAVPD-SKIRIYD---LG--KKKATV---DEFP-LCVHLVSNELEQLSSEALEAARICANKYM 74 (219)
T ss_dssp SSCSSCSSSCCCCSTTSTTCCC-CSCCCSB---CS--SCSCCS---SSSC-CCEEEECCSCEEECHHHHHHHHHHHHHHH
T ss_pred hhccccCCCCCchhhccCCCCC-CcEEEEe---CC--CCcCCc---ccCC-eeEEEEECccccccHHHHHHHHHHHHHHH
Confidence 4588999999999999999999 9999987 54 322211 1122 45789999999999999999999999999
Q ss_pred cc---ccceEEEEEcCCCCceecCCC---------cccCCCCCCcceEEEEEEeCCCEEEEEecc-CCHHHHHHHHHHcc
Q psy6080 110 DV---KKMFAVWRVDPPWLPVTKKGL---------GSRMGGGKGSIDHYVTPVKTGRIIIEVGGK-CSYEEVLPYLRSCA 176 (240)
Q Consensus 110 ~k---kk~~~iwirv~P~~pvTkK~~---------gtRMGkGKG~i~~~varVk~G~iIfEi~g~-~~~~~ak~aLk~aa 176 (240)
.+ +.+|++|||+|||+|||+|++ ++|||+|||++++|||+|++|+|||||.|. .+++.|++||++|+
T Consensus 75 ~r~~GK~~fhlwIRifP~~vir~nkmls~AgAdRl~tgMr~akGkp~gwvArVk~Gqilfei~g~~~~~~~A~eALr~A~ 154 (219)
T 3j0l_J 75 TTVSGRDAFHLRVRVHPFHVLRINKMLSCAGADRLQQGMRGAWGKPHGLAARVDIGQIIFSVRTKDSNKDVVVEGLRRAR 154 (219)
T ss_dssp HHTTCTTTCCBCCCSCCCCEEEECC-----------CCSSCCCCEEEEECEEECTTCEESCCCCCGGGHHHHHHHHHHHH
T ss_pred HHhcCCccceEEEEECCCceeeecccccccchhhhhccccCCCCCCCeEEEEEcCCCEEEEEEecCcCHHHHHHHHHHHh
Confidence 76 456779999999999999997 999999999999999999999999999995 67899999999999
Q ss_pred ccCCcceEEEecch
Q psy6080 177 SKMPFKCMPCNEDI 190 (240)
Q Consensus 177 ~KLP~k~kiV~~~~ 190 (240)
+|||++|+||....
T Consensus 155 ~KLP~~tkiv~~~k 168 (219)
T 3j0l_J 155 YKFPGQQKIILSKK 168 (219)
T ss_dssp HSSSCCCCCEECCC
T ss_pred hhCCCCeEEEEecc
Confidence 99999999997654
No 11
>2pa2_A 60S ribosomal protein L10; QM protein, , structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Homo sapiens} SCOP: d.41.4.1
Probab=100.00 E-value=1.3e-34 Score=241.67 Aligned_cols=109 Identities=19% Similarity=0.186 Sum_probs=82.8
Q ss_pred EeEEEEEeeCcccchhhHHHHHHHHhccccc---ccceEEEEEcCCCCce------ecCCCc---ccCCCCCCcceEEEE
Q psy6080 81 KQYGLVALSGGRMNYRHFETIRFAMMRKLDV---KKMFAVWRVDPPWLPV------TKKGLG---SRMGGGKGSIDHYVT 148 (240)
Q Consensus 81 G~yGL~ale~G~It~~qlEaaR~~InR~L~k---kk~~~iwirv~P~~pv------TkK~~g---tRMGkGKG~i~~~va 148 (240)
-..||+|+|.++||++||||||+++||+|++ +.+|++|||+|||+|| |++|.+ +|||+|||++++|||
T Consensus 17 ~~~~L~a~E~~~Its~qIEAaRia~~R~lkr~~Gk~~~~iwIRifP~~~ir~nkmlT~kgadRlq~gMg~gkG~p~~wvA 96 (151)
T 2pa2_A 17 LCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVA 96 (151)
T ss_dssp EEEEEEECSCEEEEHHHHHHHHHHHHHHHHHHHCTTSEEEEECCSCC-----------------------------CCEE
T ss_pred EEEEEEECccccCCHHHHHHHHHHHHHHHhhhcCCcCcEEEEEECCCeeEeecccccccchhhhhcccccCCCCccEEEE
Confidence 4579999999999999999999999999975 3568999999999999 778877 999999999999999
Q ss_pred EEeCCCEEEEEecc-CCHHHHHHHHHHccccCCcceEEEecc
Q psy6080 149 PVKTGRIIIEVGGK-CSYEEVLPYLRSCASKMPFKCMPCNED 189 (240)
Q Consensus 149 rVk~G~iIfEi~g~-~~~~~ak~aLk~aa~KLP~k~kiV~~~ 189 (240)
+|++|+||||+.|. ++++.|++||++|++|||++|+||..+
T Consensus 97 rVk~G~ilfei~~~~v~~~~A~eAlr~A~~KlP~ktkiv~~~ 138 (151)
T 2pa2_A 97 RVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISK 138 (151)
T ss_dssp EECTTBEEEEEEECGGGHHHHHHHHHHHGGGSSSCEEEEEES
T ss_pred EECCCCEEEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEEec
Confidence 99999999999995 799999999999999999999999753
No 12
>3iz5_I 60S ribosomal protein L10 (L10E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_I 1s1i_I 3jyw_I
Probab=99.98 E-value=5.5e-36 Score=262.74 Aligned_cols=150 Identities=16% Similarity=0.157 Sum_probs=108.1
Q ss_pred CCCCccCcCCCCCccCCCCCCCCCCCCCccccCCCCcccCcccCccEEEEEeEEEEEeeCcccchhhHHHHHHHHhcccc
Q psy6080 31 NYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLD 110 (240)
Q Consensus 31 ~y~~~~~p~~~kl~~~~~~P~~pk~~K~~K~~K~l~~~rG~~~~~~~L~~G~yGL~ale~G~It~~qlEaaR~~InR~L~ 110 (240)
-|+.+.-|+|||.+|+.+||. |+.+.|- .| +-+... .++- ....|+|+|.++||++||||||+++||+|.
T Consensus 8 cYr~~~~~pY~r~~y~rGvP~-~KI~~fd---~G--~kka~~---~efp-~~~~L~a~E~~qIss~qIEAARia~nRyl~ 77 (224)
T 3iz5_I 8 CYRQIKNKPYPKSRYCRGVPD-PKIRIYD---VG--MKKKGV---DEFP-YCVHLVSWEKENVSSEALEAARIACNKYMT 77 (224)
T ss_dssp --------------------------CCC---CC--SCCCGG---GTSS-CCSCCCCCTTTSCSCCCCCCSSSSEECCSS
T ss_pred hhccccCCCCchhhccCCCCC-CcEEEEe---CC--CCcCCc---ccCc-eEEEEEECccccccHHHHHHHHHHHHHHHH
Confidence 478899999999999999999 9999887 54 332211 1121 456899999999999999999999999998
Q ss_pred c---ccceEEEEEcCCCCceecCCC---------cccCCCCCCcceEEEEEEeCCCEEEEEecc-CCHHHHHHHHHHccc
Q psy6080 111 V---KKMFAVWRVDPPWLPVTKKGL---------GSRMGGGKGSIDHYVTPVKTGRIIIEVGGK-CSYEEVLPYLRSCAS 177 (240)
Q Consensus 111 k---kk~~~iwirv~P~~pvTkK~~---------gtRMGkGKG~i~~~varVk~G~iIfEi~g~-~~~~~ak~aLk~aa~ 177 (240)
+ +.+|++|||+|||+|||+|++ ++|||+|||++++|||+|++|+|||||.|. .+++.|++||++|++
T Consensus 78 r~~GK~~fhlwIRifP~~vir~nkmls~AgAdRl~tGMr~~kGkp~gwvArVk~Gqilfei~g~~~~~~~A~eALrrA~~ 157 (224)
T 3iz5_I 78 KNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKF 157 (224)
T ss_dssp CHHHHCCCEEEEEECSCCEEEHHHHHHHHHHHHHHHHHHHCSSSCSCEEEECCCCCSEECCCCCCCCSSCSSSSSSCCCS
T ss_pred HhcCCccceEEEEeCCCceeeecccccccchhhhhccccCCCCCCCeEEEEEcCCCEEEEEEecCcCHHHHHHHHHHHhh
Confidence 6 567889999999999999997 999999999999999999999999999995 678999999999999
Q ss_pred cCCcceEEEecch
Q psy6080 178 KMPFKCMPCNEDI 190 (240)
Q Consensus 178 KLP~k~kiV~~~~ 190 (240)
|||++|+||....
T Consensus 158 KLP~ktkiv~~~k 170 (224)
T 3iz5_I 158 KFPGRQKIIHSRK 170 (224)
T ss_dssp CCCCCEEEEECCT
T ss_pred hCCCceEEEEecc
Confidence 9999999996654
No 13
>2fhm_A Probable acylphosphatase; hydrolase; NMR {Bacillus subtilis} PDB: 2hlt_A 2hlu_A 3br8_A
Probab=36.21 E-value=81 Score=22.85 Aligned_cols=43 Identities=16% Similarity=0.321 Sum_probs=31.1
Q ss_pred ceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEec
Q psy6080 143 IDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNE 188 (240)
Q Consensus 143 i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~~ 188 (240)
+.+||.-..-|+|..++.| +.+.+...+..+....|. +++-+-
T Consensus 30 l~G~V~N~~dG~Vei~~eG--~~~~i~~f~~~l~~~~p~-a~V~~v 72 (91)
T 2fhm_A 30 LAGWVKNRDDGRVEILAEG--PENALQSFVEAVKNGSPF-SKVTDI 72 (91)
T ss_dssp CEEEEEECTTSCEEEEEEE--CHHHHHHHHHHHHTTCSS-SEEEEE
T ss_pred CeEEEEECCCCcEEEEEEe--CHHHHHHHHHHHHhCCCc-cEEEEE
Confidence 7899999999999999999 344455555555555555 776543
No 14
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=36.14 E-value=20 Score=25.35 Aligned_cols=30 Identities=20% Similarity=0.418 Sum_probs=23.6
Q ss_pred EEeCCCEEEEEecc----CCHHHHHHHHHHcccc
Q psy6080 149 PVKTGRIIIEVGGK----CSYEEVLPYLRSCASK 178 (240)
Q Consensus 149 rVk~G~iIfEi~g~----~~~~~ak~aLk~aa~K 178 (240)
.+++|++|++|.|. .+.+++.++++....+
T Consensus 39 ~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~ 72 (88)
T 3e17_A 39 NLHEGDIILKINGTVTENMSLTDARKLIEKSRGK 72 (88)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence 48899999999984 3678888888876543
No 15
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=35.23 E-value=24 Score=29.22 Aligned_cols=57 Identities=11% Similarity=-0.003 Sum_probs=33.2
Q ss_pred EEEEEEeCCCEEEEEeccCCHHHHHHHH-HHccccC--CcceEEEecchhHHHHHHHHHHHhccCCcccHH
Q psy6080 145 HYVTPVKTGRIIIEVGGKCSYEEVLPYL-RSCASKM--PFKCMPCNEDILREMKEKEEREARDNINPYTFE 212 (240)
Q Consensus 145 ~~varVk~G~iIfEi~g~~~~~~ak~aL-k~aa~KL--P~k~kiV~~~~l~~~~~~~~~~~~~n~n~~t~~ 212 (240)
.=.|.|..|-+||+-.. +.+.+...+ ..+...+ ++++-+.+.+.|++ .-..|||.|+
T Consensus 38 ~V~TyI~SGNvvF~s~~--~~~~l~~~ie~~l~~~fg~~v~v~vrs~~el~~---------i~~~~Pf~~~ 97 (183)
T 2hiy_A 38 KVESYINSGNIFFTSID--SKAQLVEKLETFFAVHYPFIQSFSLLSLEDFEA---------ELENLPAWWS 97 (183)
T ss_dssp EEEEETTTTEEEEEECS--CHHHHHHHHHHHHHHHCTTCCCCEEEEHHHHHH---------HHTTCCGGGG
T ss_pred cceEEEecCCEEEecCC--CHHHHHHHHHHHHHHhcCCCCCEEEecHHHHHH---------HHHhCCCCcc
Confidence 34456899999999764 433333333 2333344 44555555555554 4567888765
No 16
>1urr_A CG18505 protein; acylphosphatase, enzyme; 1.5A {Drosophila melanogaster} SCOP: d.58.10.1
Probab=35.16 E-value=81 Score=23.44 Aligned_cols=44 Identities=2% Similarity=0.018 Sum_probs=32.0
Q ss_pred ceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEec
Q psy6080 143 IDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNE 188 (240)
Q Consensus 143 i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~~ 188 (240)
+.+||.-..-|+|..++.| +.+.+.+.+..+..+-|-.+++-+-
T Consensus 39 L~G~V~N~~dG~Vei~~eG--~~~~l~~f~~~l~~~gP~~a~V~~v 82 (102)
T 1urr_A 39 VRGWCMNTRDGTVKGQLEA--PMMNLMEMKHWLENNRIPNAKVSKA 82 (102)
T ss_dssp CEEEEEECTTSCEEEEEEE--CHHHHHHHHHHHHHCCSTTCEEEEE
T ss_pred CcEEEEECCCCCEEEEEEc--CHHHHHHHHHHHHhcCCCccEEEEE
Confidence 7899999999999999999 3344444444444478878877543
No 17
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=34.11 E-value=22 Score=24.58 Aligned_cols=31 Identities=19% Similarity=0.328 Sum_probs=23.3
Q ss_pred EEeCCCEEEEEecc----CCHHHHHHHHHHccccC
Q psy6080 149 PVKTGRIIIEVGGK----CSYEEVLPYLRSCASKM 179 (240)
Q Consensus 149 rVk~G~iIfEi~g~----~~~~~ak~aLk~aa~KL 179 (240)
-+++|++|.++.|. .+..++..+++.....+
T Consensus 46 gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v 80 (87)
T 4e34_A 46 GLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEI 80 (87)
T ss_dssp CCCTTEEEEEETTEECTTCCHHHHHHHHHHCCSEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence 57899999999984 35677888887655443
No 18
>2vh7_A Acylphosphatase-1; hydrolase, acetylation; 1.45A {Homo sapiens} PDB: 2w4c_A 2w4p_A 2k7k_A 2k7j_A 2acy_A
Probab=32.48 E-value=78 Score=23.37 Aligned_cols=43 Identities=12% Similarity=0.048 Sum_probs=31.4
Q ss_pred ceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEe
Q psy6080 143 IDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCN 187 (240)
Q Consensus 143 i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~ 187 (240)
+.+||.-..-|+|..++.|. .+.+...+..+...-|-.+++-+
T Consensus 36 L~G~V~N~~dG~Vei~~eG~--~~~v~~f~~~l~~~~p~~a~V~~ 78 (99)
T 2vh7_A 36 LVGWVQNTDRGTVQGQLQGP--ISKVRHMQEWLETRGSPKSHIDK 78 (99)
T ss_dssp CEEEEEECTTSCEEEEEEEE--HHHHHHHHHHHHHTCSTTCEEEE
T ss_pred CcEEEEECCCCCEEEEEEcC--HHHHHHHHHHHHhcCCCceEEEE
Confidence 78999999999999999993 34344444444457787777654
No 19
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=29.56 E-value=34 Score=24.46 Aligned_cols=28 Identities=29% Similarity=0.547 Sum_probs=21.5
Q ss_pred EeCCCEEEEEecc-C---CHHHHHHHHHHccc
Q psy6080 150 VKTGRIIIEVGGK-C---SYEEVLPYLRSCAS 177 (240)
Q Consensus 150 Vk~G~iIfEi~g~-~---~~~~ak~aLk~aa~ 177 (240)
+++|++|++|.|. + +...+..+++....
T Consensus 49 L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~ 80 (90)
T 1y7n_A 49 VRVGHRIIEINGQSVVATPHEKIVHILSNAVG 80 (90)
T ss_dssp CCSSCEEEEETTEECTTSCHHHHHHHHHHCCE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence 5789999999994 4 57788888876543
No 20
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=29.33 E-value=15 Score=27.63 Aligned_cols=40 Identities=15% Similarity=0.145 Sum_probs=32.2
Q ss_pred EEeCCCEEEEEecc----CCHHHHHHHHHHccccCCcceEEEec
Q psy6080 149 PVKTGRIIIEVGGK----CSYEEVLPYLRSCASKMPFKCMPCNE 188 (240)
Q Consensus 149 rVk~G~iIfEi~g~----~~~~~ak~aLk~aa~KLP~k~kiV~~ 188 (240)
.+.+|+.|.||.|. ++-.++-+.|+.+..-.+|..++|..
T Consensus 46 ~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~g~~~~L~lv~p 89 (95)
T 3gge_A 46 TICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKLIEP 89 (95)
T ss_dssp TCCTTCEEEEETTEECTTCCHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred CCCCCCEEEEECCEEccCCCHHHHHHHHHhCCCCCEEEEEEECc
Confidence 36789999999983 45688999999988888888877743
No 21
>1w2i_A Acylphosphatase; hydrolase, thermophilic, stability, amyloid; 1.5A {Pyrococcus horikoshii} SCOP: d.58.10.1 PDB: 1v3z_A 2w4d_A
Probab=28.95 E-value=1.2e+02 Score=22.09 Aligned_cols=42 Identities=17% Similarity=0.172 Sum_probs=30.9
Q ss_pred ceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEe
Q psy6080 143 IDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCN 187 (240)
Q Consensus 143 i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~ 187 (240)
+.+||.-..-|+|..++.|. .+ +.++|.....+-|-.+++-+
T Consensus 32 L~G~V~N~~dG~Vei~~~G~--~~-~v~~f~~~l~~gP~~a~V~~ 73 (91)
T 1w2i_A 32 VNGWVRNLPDGSVEAVLEGD--EE-RVEALIGWAHQGPPLARVTR 73 (91)
T ss_dssp CEEEEEECTTSCEEEEEEEE--HH-HHHHHHHHTTTCSTTCEEEE
T ss_pred CeEEEEECCCCCEEEEEEeC--HH-HHHHHHHHHHhCCCCcEEEE
Confidence 68999999999999999993 33 34445545458887788744
No 22
>1ulr_A Putative acylphosphatase; hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: d.58.10.1
Probab=28.93 E-value=1.2e+02 Score=21.88 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=30.4
Q ss_pred ceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEec
Q psy6080 143 IDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNE 188 (240)
Q Consensus 143 i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~~ 188 (240)
+.+||.-..-|+|..++.| +.+.+.. |.....+-|-.+++-+-
T Consensus 30 l~G~V~N~~dG~Vei~~eG--~~~~i~~-f~~~l~~gP~~a~V~~v 72 (88)
T 1ulr_A 30 LSGYAENLPDGRVEVVAEG--PKEALEL-FLHHLKQGPRLARVEAV 72 (88)
T ss_dssp CEEEEEECTTSCEEEEEES--CHHHHHH-HHHHHHHCSTTCEEEEE
T ss_pred CeEEEEECCCCcEEEEEEe--CHHHHHH-HHHHHHhCCCCcEEEEE
Confidence 7899999999999999999 3343444 44444477777777543
No 23
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=28.04 E-value=29 Score=25.44 Aligned_cols=27 Identities=15% Similarity=0.416 Sum_probs=21.7
Q ss_pred EeCCCEEEEEecc-CC---HHHHHHHHHHcc
Q psy6080 150 VKTGRIIIEVGGK-CS---YEEVLPYLRSCA 176 (240)
Q Consensus 150 Vk~G~iIfEi~g~-~~---~~~ak~aLk~aa 176 (240)
+++|++|++|.|. +. .+++.++++...
T Consensus 55 L~~GD~Il~ING~~v~~~~~~~~~~~l~~~~ 85 (97)
T 2ejy_A 55 LHVGDEILEINGTNVTNHSVDQLQKAMKETK 85 (97)
T ss_dssp CCTTCEEEEETTBCCCSSCSHHHHHHHHHCC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 7899999999994 33 688888888754
No 24
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}
Probab=32.01 E-value=14 Score=27.63 Aligned_cols=34 Identities=21% Similarity=0.343 Sum_probs=22.2
Q ss_pred EEEeCCCEEEEEecc-C---CHHHHHHHHHHccccCCc
Q psy6080 148 TPVKTGRIIIEVGGK-C---SYEEVLPYLRSCASKMPF 181 (240)
Q Consensus 148 arVk~G~iIfEi~g~-~---~~~~ak~aLk~aa~KLP~ 181 (240)
+-+++|++|++|.|. + +...+..+++.....+.+
T Consensus 70 aGL~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~~v~l 107 (112)
T 2lob_A 70 GGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEF 107 (112)
Confidence 568999999999983 2 245555566554444433
No 25
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=25.95 E-value=78 Score=23.17 Aligned_cols=14 Identities=21% Similarity=0.394 Sum_probs=12.4
Q ss_pred EEeCCCEEEEEecc
Q psy6080 149 PVKTGRIIIEVGGK 162 (240)
Q Consensus 149 rVk~G~iIfEi~g~ 162 (240)
.|++|++|+++...
T Consensus 22 ~V~~Gq~L~~ld~~ 35 (116)
T 2k32_A 22 KVKKGQTLFIIEQD 35 (116)
T ss_dssp EECTTCEEEEEECT
T ss_pred EECCCCEEEEECHH
Confidence 68999999999973
No 26
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=25.88 E-value=60 Score=22.67 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=26.6
Q ss_pred EEEeCCCEEEEEecc-C---CHHHHHHHHHHccccCCcceEE
Q psy6080 148 TPVKTGRIIIEVGGK-C---SYEEVLPYLRSCASKMPFKCMP 185 (240)
Q Consensus 148 arVk~G~iIfEi~g~-~---~~~~ak~aLk~aa~KLP~k~ki 185 (240)
+-+++|+.|++|.|. + +.+++.+.|+.... ++...+
T Consensus 42 agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~--~v~l~v 81 (88)
T 1kwa_A 42 GTLHVGDEIREINGISVANQTVEQLQKMLREMRG--SITFKI 81 (88)
T ss_dssp TCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCE--EEEEEE
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCC--cEEEEE
Confidence 447899999999984 2 67888888888755 444443
No 27
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.83 E-value=61 Score=22.79 Aligned_cols=29 Identities=28% Similarity=0.425 Sum_probs=22.6
Q ss_pred EEeCCCEEEEEecc-C--CHHHHHHHHHHccc
Q psy6080 149 PVKTGRIIIEVGGK-C--SYEEVLPYLRSCAS 177 (240)
Q Consensus 149 rVk~G~iIfEi~g~-~--~~~~ak~aLk~aa~ 177 (240)
.+++|++|++|.|. + +.+++..+|+....
T Consensus 47 ~L~~GD~I~~ing~~v~~~~~~~~~~l~~~~~ 78 (91)
T 2e7k_A 47 LLHVGDIIKEVNGQPVGSDPRALQELLRNASG 78 (91)
T ss_dssp CCCTTCEEEEETTEECTTCHHHHHHHHHTCCS
T ss_pred CCCCCCEEEEECCEECCCCHHHHHHHHHcCCC
Confidence 36899999999984 4 67888888887544
No 28
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=25.55 E-value=41 Score=23.54 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=23.3
Q ss_pred EEeCCCEEEEEecc----CCHHHHHHHHHHccc
Q psy6080 149 PVKTGRIIIEVGGK----CSYEEVLPYLRSCAS 177 (240)
Q Consensus 149 rVk~G~iIfEi~g~----~~~~~ak~aLk~aa~ 177 (240)
.+++|+.|++|.|. .+.+++..+|+....
T Consensus 46 ~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~ 78 (93)
T 3o46_A 46 LIHVGDELREVNGIPVEDKRPEEIIQILAQSQG 78 (93)
T ss_dssp CCCTTCEEEEETTEESTTSCHHHHHHHHHHCCE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence 48899999999984 367888888887654
No 29
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=23.65 E-value=34 Score=24.33 Aligned_cols=27 Identities=30% Similarity=0.465 Sum_probs=20.8
Q ss_pred EeCCCEEEEEecc--CC--HHHHHHHHHHcc
Q psy6080 150 VKTGRIIIEVGGK--CS--YEEVLPYLRSCA 176 (240)
Q Consensus 150 Vk~G~iIfEi~g~--~~--~~~ak~aLk~aa 176 (240)
+++|++|++|.|. .+ ...+..+++...
T Consensus 58 l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~ 88 (103)
T 2fcf_A 58 LKPGDRIVEVDGMDLRDASHEQAVEAIRKAG 88 (103)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHTCC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 7899999999994 23 677777877653
No 30
>2bjd_A Acylphosphatase; hyperthermophIle, hydrolase; 1.27A {Sulfolobus solfataricus} PDB: 2bje_A 1y9o_A
Probab=23.62 E-value=1.5e+02 Score=22.06 Aligned_cols=42 Identities=17% Similarity=0.184 Sum_probs=30.2
Q ss_pred ceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEe
Q psy6080 143 IDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCN 187 (240)
Q Consensus 143 i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~ 187 (240)
+.+||.-..-|+|..++.|. .+.+...+..+..- |-.+++-+
T Consensus 42 L~G~V~N~~dG~Vei~~eG~--~~~i~~f~~~l~~g-P~~A~V~~ 83 (101)
T 2bjd_A 42 IKGYAKNLPDGSVEVVAEGY--EEALSKLLERIKQG-PPAAEVEK 83 (101)
T ss_dssp CEEEEEECTTSCEEEEEEEE--HHHHHHHHHHHTTC-STTCEEEE
T ss_pred CeEEEEECCCCcEEEEEEeC--HHHHHHHHHHHHhC-CCccEEEE
Confidence 78999999999999999993 34444445455444 76677654
No 31
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=22.77 E-value=47 Score=22.90 Aligned_cols=27 Identities=11% Similarity=0.418 Sum_probs=21.3
Q ss_pred EeCCCEEEEEecc--C--CHHHHHHHHHHcc
Q psy6080 150 VKTGRIIIEVGGK--C--SYEEVLPYLRSCA 176 (240)
Q Consensus 150 Vk~G~iIfEi~g~--~--~~~~ak~aLk~aa 176 (240)
+++|++|.+|.|. . +...+..+++...
T Consensus 42 l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~ 72 (92)
T 3cyy_A 42 IQEGDVVLKINGTVTENMSLTDAKTLIERSK 72 (92)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHTTT
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 8999999999994 3 6777777777644
No 32
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=22.64 E-value=39 Score=25.52 Aligned_cols=28 Identities=29% Similarity=0.468 Sum_probs=21.8
Q ss_pred EeCCCEEEEEecc-C-C--HHHHHHHHHHccc
Q psy6080 150 VKTGRIIIEVGGK-C-S--YEEVLPYLRSCAS 177 (240)
Q Consensus 150 Vk~G~iIfEi~g~-~-~--~~~ak~aLk~aa~ 177 (240)
+++|++|++|.|. + + .+++..+|+....
T Consensus 78 L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~ 109 (123)
T 2iwq_A 78 LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGN 109 (123)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHHCCS
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence 7899999999994 2 3 6778888877644
No 33
>2gv1_A Probable acylphosphatase; globular alpha-helix/beta-sheet protein, hydrolase; NMR {Escherichia coli}
Probab=22.36 E-value=1.4e+02 Score=21.55 Aligned_cols=42 Identities=12% Similarity=0.165 Sum_probs=29.8
Q ss_pred ceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHc-cccCCcceEEEe
Q psy6080 143 IDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSC-ASKMPFKCMPCN 187 (240)
Q Consensus 143 i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~a-a~KLP~k~kiV~ 187 (240)
+.+||.-..-|+|..++.| +.+.+...+..+ ..- |-.+++-+
T Consensus 32 L~G~V~N~~dG~Vei~~eG--~~~~i~~f~~~l~~~g-P~~a~V~~ 74 (92)
T 2gv1_A 32 LTGYAKNLDDGSVEVVACG--EEGQVEKLMQWLKSGG-PRSARVER 74 (92)
T ss_dssp CCCEEEECSSSCEEEEECS--CHHHHHHHHHHHHHTS-STTSEEEE
T ss_pred CeEEEEECCCCcEEEEEEe--CHHHHHHHHHHhhccC-CCceEEEE
Confidence 6789999999999999999 334444455444 444 77777654
No 34
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=22.11 E-value=48 Score=24.77 Aligned_cols=27 Identities=15% Similarity=0.285 Sum_probs=21.1
Q ss_pred EeCCCEEEEEecc-C----CHHHHHHHHHHcc
Q psy6080 150 VKTGRIIIEVGGK-C----SYEEVLPYLRSCA 176 (240)
Q Consensus 150 Vk~G~iIfEi~g~-~----~~~~ak~aLk~aa 176 (240)
+++|++|++|.|. + +.+.+..+|+...
T Consensus 73 L~~GD~Il~ing~~v~~~~~~~~~~~~l~~~~ 104 (128)
T 2db5_A 73 LKENDQILAINHTPLDQNISHQQAIALLQQTT 104 (128)
T ss_dssp CCSSCBEEEESSCBCSTTSCHHHHHHHHHHCC
T ss_pred CCCCCEEEEECCEECCCCCCHHHHHHHHHcCC
Confidence 8899999999984 3 5677777777643
No 35
>2lta_A De novo designed protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=27.42 E-value=19 Score=27.26 Aligned_cols=48 Identities=21% Similarity=0.277 Sum_probs=39.1
Q ss_pred CCcccCCCCCCcceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHcccc
Q psy6080 131 GLGSRMGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASK 178 (240)
Q Consensus 131 ~~gtRMGkGKG~i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~K 178 (240)
+-++|--+.-..||.|...|+..+.-+|+.-..++++|+++|.-+.+|
T Consensus 53 gfevrkvkddddidkwidkikkerpqlevrkvtdedqakqiledlkkk 100 (110)
T 2lta_A 53 GFEVRKVKDDDDIDKWIDKIKKERPQLEVRKVTDEDQAKQILEDLKKK 100 (110)
Confidence 345666666688999999999999999999766778899998877655
No 36
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=21.42 E-value=55 Score=22.91 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=19.9
Q ss_pred EeCCCEEEEEecc--CC--HHHHHHHHHH
Q psy6080 150 VKTGRIIIEVGGK--CS--YEEVLPYLRS 174 (240)
Q Consensus 150 Vk~G~iIfEi~g~--~~--~~~ak~aLk~ 174 (240)
+++|++|++|.|. .+ .+.+..+|+.
T Consensus 51 l~~GD~I~~ing~~v~~~~~~~~~~~l~~ 79 (97)
T 2jil_A 51 IKPGDRLLSVDGIRLLGTTHAEAMSILKQ 79 (97)
T ss_dssp CCTTCEEEEETTEECSSCCHHHHHHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 7899999999984 23 6777777776
No 37
>3trg_A Acylphosphatase; fatty acid and phospholipid metabolism, hydrolase; 1.60A {Coxiella burnetii}
Probab=21.28 E-value=1.9e+02 Score=21.34 Aligned_cols=43 Identities=14% Similarity=0.242 Sum_probs=30.7
Q ss_pred ceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEec
Q psy6080 143 IDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNE 188 (240)
Q Consensus 143 i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~~ 188 (240)
+.+||.-..-|.|-.++.|. .+.+. +|......-|-.+++..-
T Consensus 40 L~G~VrN~~dG~Vei~~eG~--~~~l~-~f~~~l~~gPp~A~V~~v 82 (98)
T 3trg_A 40 LTGWVKNLSHGDVELVACGE--RDSIM-ILTEWLWEGPPQAAVSNV 82 (98)
T ss_dssp CEEEEEECTTSCEEEEEEEE--HHHHH-HHHHHTTTCSTTCEEEEE
T ss_pred CeEEEEECCCCEEEEEEEEC--HHHHH-HHHHHHHhCCCCcEEEEE
Confidence 68999999999999999993 34344 444444557877777543
No 38
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=21.28 E-value=64 Score=22.26 Aligned_cols=41 Identities=10% Similarity=0.109 Sum_probs=29.1
Q ss_pred EEEEEeccCCHHHHHHHHHHccccCCcceEEEecchhHHHH
Q psy6080 155 IIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNEDILREMK 195 (240)
Q Consensus 155 iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~~~~l~~~~ 195 (240)
+.+|+.+..+.+...++|+.++..+-+.+.+...+.-+.|+
T Consensus 49 i~v~~~~~~~l~~l~~~L~~~~~~~~~~~~~~~~~if~~~~ 89 (91)
T 1zpv_A 49 AVVSSDEKQDFTYLRNEFEAFGQTLNVKINIQSAAIFEAMY 89 (91)
T ss_dssp EEEEESSCCCHHHHHHHHHHHHHHHTEEEEEEEGGGTC---
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHcCCEEEEeeHHHHHHhh
Confidence 34455544678999999999999999888887666655554
No 39
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=21.10 E-value=1.6e+02 Score=25.43 Aligned_cols=24 Identities=13% Similarity=0.266 Sum_probs=17.1
Q ss_pred EEeCCCEEEEEeccCCHHHHHHHHH
Q psy6080 149 PVKTGRIIIEVGGKCSYEEVLPYLR 173 (240)
Q Consensus 149 rVk~G~iIfEi~g~~~~~~ak~aLk 173 (240)
.|++|++|+++.. .++..+...+.
T Consensus 78 ~V~kGq~L~~ld~-~~l~~a~~~l~ 101 (359)
T 3lnn_A 78 EVKAGDVLFTIDS-ADLAQANSDAA 101 (359)
T ss_dssp EECTTCEEEEEEC-SSHHHHHHHHH
T ss_pred EEcCCCEEEEECh-HHHHHHHHHHH
Confidence 7999999999997 45544444333
No 40
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=20.86 E-value=56 Score=23.83 Aligned_cols=27 Identities=15% Similarity=0.365 Sum_probs=21.1
Q ss_pred EeCCCEEEEEecc-C----CHHHHHHHHHHcc
Q psy6080 150 VKTGRIIIEVGGK-C----SYEEVLPYLRSCA 176 (240)
Q Consensus 150 Vk~G~iIfEi~g~-~----~~~~ak~aLk~aa 176 (240)
+++|++|++|.|. + +...+..+++...
T Consensus 68 l~~GD~Il~ing~~v~~~~~~~~~~~~l~~~~ 99 (117)
T 2o2t_A 68 LKETDQILAINGQALDQTITHQQAISILQKAK 99 (117)
T ss_dssp CCTTCEEEEETTEECCTTSCHHHHHHHHHHCC
T ss_pred CCCCCEEEEECCEECCCCCCHHHHHHHHHcCC
Confidence 8899999999984 3 5677777777643
No 41
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=20.84 E-value=1.1e+02 Score=20.89 Aligned_cols=27 Identities=22% Similarity=0.501 Sum_probs=20.7
Q ss_pred EeCCCEEEEEecc-C-C--HHHHHHHHHHcc
Q psy6080 150 VKTGRIIIEVGGK-C-S--YEEVLPYLRSCA 176 (240)
Q Consensus 150 Vk~G~iIfEi~g~-~-~--~~~ak~aLk~aa 176 (240)
+++|++|++|.|. + + .+.+.++++...
T Consensus 44 L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~ 74 (87)
T 2pa1_A 44 LRPGDIIVAINGESAEGMLHAEAQSKIRQSP 74 (87)
T ss_dssp CCTTCEEEEETTEESTTCCHHHHHHHHHTCC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 7899999999984 2 3 577777777654
No 42
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=20.73 E-value=61 Score=21.52 Aligned_cols=26 Identities=12% Similarity=0.439 Sum_probs=20.3
Q ss_pred EeCCCEEEEEecc--C--CHHHHHHHHHHc
Q psy6080 150 VKTGRIIIEVGGK--C--SYEEVLPYLRSC 175 (240)
Q Consensus 150 Vk~G~iIfEi~g~--~--~~~~ak~aLk~a 175 (240)
+++|++|+++.|. . +...+..+++..
T Consensus 40 l~~GD~I~~ing~~v~~~~~~~~~~~l~~~ 69 (81)
T 2rcz_A 40 IQEGDVVLKINGTVTENMSLTDAKTLIERS 69 (81)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHTS
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCC
Confidence 8899999999984 2 567777777654
No 43
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=20.61 E-value=1.4e+02 Score=21.02 Aligned_cols=27 Identities=22% Similarity=0.509 Sum_probs=20.3
Q ss_pred EEeCCCEEEEEecc--CCHHHHHHHHHHc
Q psy6080 149 PVKTGRIIIEVGGK--CSYEEVLPYLRSC 175 (240)
Q Consensus 149 rVk~G~iIfEi~g~--~~~~~ak~aLk~a 175 (240)
-+++|++|.+|.|. .+...+..++...
T Consensus 21 GL~~GD~Il~InG~~v~~~~~l~~~l~~~ 49 (94)
T 2kl1_A 21 RLEAGDRIAAIDGQPINTSEQIVSYVREK 49 (94)
T ss_dssp TBCTTCEEEEETTBCCCCHHHHHHHHHHS
T ss_pred CCCCCCEEEEECCEECCCHHHHHHHHHhC
Confidence 38999999999995 3566666666654
Done!