RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6080
(240 letters)
>d2gyck1 d.41.4.2 (K:3-133) Ribosomal protein L16p {Escherichia coli
[TaxId: 562]}
Length = 131
Score = 103 bits (259), Expect = 6e-29
Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 3/108 (2%)
Query: 76 NYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKKGLGSR 135
+ +GL A+ GR+ R E R AM R + K+ +W P P+T+K L R
Sbjct: 22 TDVSFGSFGLKAVGRGRLTARQIEAARRAMTRAV--KRQGKIWIRVFPDKPITEKPLAVR 79
Query: 136 MGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKC 183
MG GKG+++++V ++ G+++ E+ G E + A+K+P K
Sbjct: 80 MGKGKGNVEYWVALIQPGKVLYEMDGV-PEELAREAFKLAAAKLPIKT 126
>d2j01q1 d.41.4.2 (Q:6-141) Ribosomal protein L16p {Thermus
thermophilus [TaxId: 274]}
Length = 136
Score = 100 bits (251), Expect = 1e-27
Identities = 43/128 (33%), Positives = 64/128 (50%), Gaps = 3/128 (2%)
Query: 68 LRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPV 127
L+G + +Y+ YGLVAL + + E R AM+R ++ ++ P P
Sbjct: 12 LKGATKGGDYVAFGDYGLVALEPAWITAQQIEAARVAMVRHF--RRGGKIFIRIFPDKPY 69
Query: 128 TKKGLGSRMGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCN 187
TKK L RMG GKG+++ YV VK GR++ EV G + E+ + LR K+P K
Sbjct: 70 TKKPLEVRMGKGKGNVEGYVAVVKPGRVMFEVAGV-TEEQAMEALRIAGHKLPIKTKIVR 128
Query: 188 EDILREMK 195
D E +
Sbjct: 129 RDAYDEAQ 136
>d1vqoh1 d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 163
Score = 90.3 bits (224), Expect = 2e-23
Identities = 25/171 (14%), Positives = 47/171 (27%), Gaps = 24/171 (14%)
Query: 27 KKPPNYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHNYLIHKQYGLV 86
K Y I P R +++ +P K + G ++ Q L+
Sbjct: 1 KPASMYRDIDKPAYTRREYITGIP----GSKIAQHK------MGRKQKDADDYPVQISLI 50
Query: 87 ALSGGRMNYRHFETIRFAMMRKLDVK----KMFAVWRVDPPWLPVTKK---------GLG 133
++ + E R + R L + + + P + + +
Sbjct: 51 VEETVQLRHGSLEASRLSANRHLIKELGEEGDYKMTLRKFPHQVLRENKQATGAGADRVS 110
Query: 134 SRMGGGKGSIDHYVTPVKTGRIIIEVGGKC-SYEEVLPYLRSCASKMPFKC 183
M G I V+ G + E V R +K+ C
Sbjct: 111 DGMRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSC 161
>d1jj2h_ d.41.4.1 (H:) Ribosomal protein L10e {Archaeon Haloarcula
marismortui [TaxId: 2238]}
Length = 167
Score = 78.7 bits (194), Expect = 7e-19
Identities = 22/164 (13%), Positives = 36/164 (21%), Gaps = 14/164 (8%)
Query: 27 KKPPNYDHIVMPERPRLKFVDKVPTFIYNHKTPR----TTKRLDLLRGPEEIHNYLI-HK 81
K Y + P R +++ +P K + P ++ +
Sbjct: 1 KPGAMYRNSSKPAYTRREYISGIP----GKKIAQFDMGNNGAGP--TYPAQVELVVEKPV 54
Query: 82 QYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFA--VWRVDPPWLPVTKKGLGSRMGGG 139
Q AL R+ + A + F V R + M
Sbjct: 55 QIRHNALEAARVAANRYVQNSGAAANYKFRIRKFPFHVIRENKAAAAAAAAAAADGMRAP 114
Query: 140 KGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKC 183
G V I V R K+
Sbjct: 115 FGKPVGTAARVHGANHIFIAWVN-PDPNVEEAWRRAKMKVTPTI 157
>d2pa2a1 d.41.4.1 (A:40-176) Ribosomal protein L10e {Human (Homo
sapiens) [TaxId: 9606]}
Length = 137
Score = 67.2 bits (164), Expect = 6e-15
Identities = 20/112 (17%), Positives = 38/112 (33%), Gaps = 13/112 (11%)
Query: 85 LVALSGGRMNYRHFETIRFAMMRKLDVK---KMFAVWRVDPPWLPVTKK---------GL 132
+V+ +++ E R + + F + P+ + L
Sbjct: 13 MVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRL 72
Query: 133 GSRMGGGKGSIDHYVTPVKTGRIIIEVGGK-CSYEEVLPYLRSCASKMPFKC 183
+ M G G V V G++I+ + K + E V+ LR K P +
Sbjct: 73 QTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQ 124
>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus
[TaxId: 274]}
Length = 1504
Score = 33.2 bits (75), Expect = 0.030
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 66 DLLR--GPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVK 112
LL GPE + YL+ + + G +++ +H E + MM+ ++V
Sbjct: 1333 QLLEAKGPEAVERYLVEEIQKVYRAQGVKLHDKHIEIVVRQMMKYVEVT 1381
>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF
{Human (Homo sapiens) [TaxId: 9606]}
Length = 91
Score = 30.6 bits (69), Expect = 0.044
Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 15/77 (19%)
Query: 128 TKKGLGSRMGGGKGSIDHYVTPV-----------KTGRIIIEVGGK----CSYEEVLPYL 172
G G + G KG + Y+ V G ++EV G+ ++++V+ +
Sbjct: 12 GPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRI 71
Query: 173 RSCASKMPFKCMPCNED 189
R+ + + + D
Sbjct: 72 RAALNAVRLLVVDPETD 88
>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 102
Score = 26.8 bits (59), Expect = 1.2
Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 23/91 (25%)
Query: 128 TKKGLGSRMGGGKGSIDHYVTPVKTGRI------------IIEVGGK----CSYEEVLPY 171
GLG + GG+ +++ + G I+ V G S+E+
Sbjct: 18 GSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIA 77
Query: 172 LRSCASKMPFKCMPCNEDILREMKEKEEREA 202
L++ + + +E EA
Sbjct: 78 LKNAGQTVTII-------AQYKPEEYSRFEA 101
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 1449
Score = 27.1 bits (59), Expect = 2.3
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 68 LRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRK 108
+ G E L + Y ++A G +NYRH + M +
Sbjct: 1337 VLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQ 1377
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 140
Score = 25.3 bits (55), Expect = 4.2
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 8/47 (17%)
Query: 177 SKMPFKCMPCNEDILREMKEKEEREARD--------NINPYTFEYMI 215
S +P E++ + M KE+ RD + P ++
Sbjct: 1 SPLPVLSWANREEVWKIMLNKEKTYLRDQHFLEQHPLLQPKMRAILL 47
>d1a6ca2 b.121.4.2 (A:177-348) Nepovirus capsid protein {TRSV
(Tobacco ringspot virus) [TaxId: 12282]}
Length = 172
Score = 25.5 bits (56), Expect = 4.3
Identities = 6/25 (24%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 50 PTFIYNHKTPRTTKRLDLLRGPEEI 74
PT + + T +D +EI
Sbjct: 1 PTMTWPIQ-LGDTFAIDRYYEAKEI 24
>d16vpa_ d.180.1.1 (A:) Conserved core of transcriptional regulatory
protein vp16 {Herpes simplex virus type 1 [TaxId:
10298]}
Length = 356
Score = 25.6 bits (56), Expect = 6.9
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 181 FKCMPCNEDILREMK 195
F +P N D+ RE K
Sbjct: 43 FSALPTNADLYRECK 57
>d2hgsa4 d.142.1.6 (A:3-201,A:304-474) Eukaryotic glutathione
synthetase ATP-binding domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 370
Score = 25.2 bits (55), Expect = 7.6
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 189 DILREMKEKEEREAR---DNINPYTFE-YMIKNN 218
L+++K+ EER + + I P FE +++
Sbjct: 277 QALKQLKDSEERASYILMEKIEPEPFENCLLRPG 310
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.141 0.448
Gapped
Lambda K H
0.267 0.0621 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,010,065
Number of extensions: 50431
Number of successful extensions: 124
Number of sequences better than 10.0: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 17
Length of query: 240
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 157
Effective length of database: 1,268,006
Effective search space: 199076942
Effective search space used: 199076942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.7 bits)