BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6081
(226 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VM71|XRN2_DROME 5'-3' exoribonuclease 2 homolog OS=Drosophila melanogaster GN=Rat1
PE=1 SV=2
Length = 908
Score = 295 bits (756), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 143/191 (74%), Positives = 154/191 (80%), Gaps = 19/191 (9%)
Query: 36 GQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLFR 95
G+ I D + PNPNG+EFDNLYLDMNGIIHPCTHPEDKPAPK+EDEMMVAIFECIDRLF
Sbjct: 32 GRNIYEDPTLPNPNGIEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFECIDRLFG 91
Query: 96 IVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAEKIAE 155
IVRPRKLLYMAIDGVAPRAKMNQ RSRRFRA+KET EK E
Sbjct: 92 IVRPRKLLYMAIDGVAPRAKMNQ-------------------QRSRRFRAAKETTEKRLE 132
Query: 156 VARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDPGWKG 215
+ARIRE+LL+ GC LPPEKEKG HFDSNCITPGTPFM LS CLHY++HDR NN+P WKG
Sbjct: 133 IARIREELLSRGCKLPPEKEKGEHFDSNCITPGTPFMDRLSKCLHYFVHDRQNNNPAWKG 192
Query: 216 IKVILSDANVP 226
IKVILSDANVP
Sbjct: 193 IKVILSDANVP 203
>sp|Q9DBR1|XRN2_MOUSE 5'-3' exoribonuclease 2 OS=Mus musculus GN=Xrn2 PE=1 SV=1
Length = 951
Score = 266 bits (680), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 135/196 (68%), Positives = 147/196 (75%), Gaps = 20/196 (10%)
Query: 31 PQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECI 90
P+E NG KIP D+SKPNPN +EFDNLYLDMNGIIHPCTHPEDKPAPK+EDEMMVAIFE I
Sbjct: 26 PKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFEYI 85
Query: 91 DRLFRIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETA 150
DRLF IVRPR+LLYMAIDGVAPRAKMNQ RSRRFRASKE
Sbjct: 86 DRLFNIVRPRRLLYMAIDGVAPRAKMNQ-------------------QRSRRFRASKEGM 126
Query: 151 EKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNND 210
E E R+RE++LA G LPPE+ K FDSNCITPGT FM L+ CL YYI DRLNND
Sbjct: 127 EAAVEKQRVREEILAKGGFLPPEEIK-ERFDSNCITPGTEFMDNLAKCLRYYIADRLNND 185
Query: 211 PGWKGIKVILSDANVP 226
PGWK + VILSDA+ P
Sbjct: 186 PGWKNLTVILSDASAP 201
>sp|Q5R4L5|XRN2_PONAB 5'-3' exoribonuclease 2 OS=Pongo abelii GN=XRN2 PE=2 SV=1
Length = 950
Score = 266 bits (680), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 135/196 (68%), Positives = 147/196 (75%), Gaps = 20/196 (10%)
Query: 31 PQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECI 90
P+E NG KIP D+SKPNPN +EFDNLYLDMNGIIHPCTHPEDKPAPK+EDEMMVAIFE I
Sbjct: 26 PKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFEYI 85
Query: 91 DRLFRIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETA 150
DRLF IVRPR+LLYMAIDGVAPRAKMNQ RSRRFRASKE
Sbjct: 86 DRLFSIVRPRRLLYMAIDGVAPRAKMNQ-------------------QRSRRFRASKEGM 126
Query: 151 EKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNND 210
E E R+RE++LA G LPPE+ K FDSNCITPGT FM L+ CL YYI DRLNND
Sbjct: 127 EAAVEKQRVREEILAKGGFLPPEEIK-ERFDSNCITPGTEFMDNLAKCLRYYIADRLNND 185
Query: 211 PGWKGIKVILSDANVP 226
PGWK + VILSDA+ P
Sbjct: 186 PGWKNLTVILSDASAP 201
>sp|Q9H0D6|XRN2_HUMAN 5'-3' exoribonuclease 2 OS=Homo sapiens GN=XRN2 PE=1 SV=1
Length = 950
Score = 266 bits (680), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 135/196 (68%), Positives = 147/196 (75%), Gaps = 20/196 (10%)
Query: 31 PQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECI 90
P+E NG KIP D+SKPNPN +EFDNLYLDMNGIIHPCTHPEDKPAPK+EDEMMVAIFE I
Sbjct: 26 PKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFEYI 85
Query: 91 DRLFRIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETA 150
DRLF IVRPR+LLYMAIDGVAPRAKMNQ RSRRFRASKE
Sbjct: 86 DRLFSIVRPRRLLYMAIDGVAPRAKMNQ-------------------QRSRRFRASKEGM 126
Query: 151 EKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNND 210
E E R+RE++LA G LPPE+ K FDSNCITPGT FM L+ CL YYI DRLNND
Sbjct: 127 EAAVEKQRVREEILAKGGFLPPEEIK-ERFDSNCITPGTEFMDNLAKCLRYYIADRLNND 185
Query: 211 PGWKGIKVILSDANVP 226
PGWK + VILSDA+ P
Sbjct: 186 PGWKNLTVILSDASAP 201
>sp|Q5ZIP4|XRN2_CHICK 5'-3' exoribonuclease 2 OS=Gallus gallus GN=XRN2 PE=2 SV=1
Length = 949
Score = 255 bits (652), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 130/195 (66%), Positives = 145/195 (74%), Gaps = 20/195 (10%)
Query: 32 QEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECID 91
+E NG K D+SKPNPN +EFDNLYLDMNGIIHPCTHPEDKPAPK+EDEMMVAIFE ID
Sbjct: 27 KECNGVKASVDTSKPNPNEVEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFEYID 86
Query: 92 RLFRIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAE 151
R+F IVRPR+LLYMAIDGVAPRAKMNQ RSRRFRASKE E
Sbjct: 87 RIFNIVRPRRLLYMAIDGVAPRAKMNQ-------------------QRSRRFRASKEGME 127
Query: 152 KIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDP 211
E +IR+++LA G ILPPE+ K FDSNCITPGT FM L+ CL YYI DRLN+DP
Sbjct: 128 AAEEKQKIRQEILAKGGILPPEEVK-ERFDSNCITPGTEFMDNLAKCLRYYIADRLNSDP 186
Query: 212 GWKGIKVILSDANVP 226
GWK + VILSDA+ P
Sbjct: 187 GWKNLTVILSDASAP 201
>sp|Q60SG7|XRN2_CAEBR 5'-3' exoribonuclease 2 homolog OS=Caenorhabditis briggsae GN=xrn-2
PE=3 SV=2
Length = 976
Score = 253 bits (645), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 123/195 (63%), Positives = 145/195 (74%), Gaps = 21/195 (10%)
Query: 34 VNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRL 93
V+G+++P D ++PNPN EFDNLYLDMNGIIHPCTHPED+PAPK+EDEM IFE IDR+
Sbjct: 29 VDGRRVPVDCTQPNPNFQEFDNLYLDMNGIIHPCTHPEDRPAPKNEDEMFALIFEYIDRI 88
Query: 94 FRIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAEKI 153
F IVRPR+LLYMAIDGVAPRAKMNQ RSRRFRASKE AEK
Sbjct: 89 FSIVRPRRLLYMAIDGVAPRAKMNQ-------------------QRSRRFRASKEMAEKA 129
Query: 154 AEVARIREKLLADGCILPPEK--EKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDP 211
A + R +L+A+G +P +K E+ +HFDSNCITPGTPFMA L+ L YYIHDR+ NDP
Sbjct: 130 ASIEEQRRRLIAEGIAVPQKKKDEEEAHFDSNCITPGTPFMARLADALRYYIHDRVTNDP 189
Query: 212 GWKGIKVILSDANVP 226
W I++ILSDANVP
Sbjct: 190 AWANIEIILSDANVP 204
>sp|Q9U299|XRN2_CAEEL 5'-3' exoribonuclease 2 homolog OS=Caenorhabditis elegans GN=xrn-2
PE=3 SV=2
Length = 975
Score = 252 bits (644), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 120/195 (61%), Positives = 145/195 (74%), Gaps = 19/195 (9%)
Query: 32 QEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECID 91
++ +G ++P D ++PNPN EFDNLYLDMNGIIHPCTHPED+PAPK+EDEM IFE ID
Sbjct: 27 RDQDGNRVPVDCTQPNPNFQEFDNLYLDMNGIIHPCTHPEDRPAPKNEDEMFALIFEYID 86
Query: 92 RLFRIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAE 151
R++ IVRPR+LLYMAIDGVAPRAKMNQ RSRRFRASKE AE
Sbjct: 87 RIYSIVRPRRLLYMAIDGVAPRAKMNQ-------------------QRSRRFRASKEMAE 127
Query: 152 KIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDP 211
K A + R +L+A+G +PP+K++ +HFDSNCITPGTPFMA L+ L YYIHDR+ ND
Sbjct: 128 KEASIEEQRNRLMAEGIAVPPKKKEEAHFDSNCITPGTPFMARLADALRYYIHDRVTNDA 187
Query: 212 GWKGIKVILSDANVP 226
W I++ILSDANVP
Sbjct: 188 SWANIEIILSDANVP 202
>sp|Q9FQ02|XRN2_ARATH 5'-3' exoribonuclease 2 OS=Arabidopsis thaliana GN=XRN2 PE=2 SV=1
Length = 1012
Score = 210 bits (534), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 122/198 (61%), Positives = 137/198 (69%), Gaps = 22/198 (11%)
Query: 31 PQEVNGQ--KIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFE 88
P EVNG IP DSSKPNPNG E+DNLYLDMNGIIHPC HPEDKP+P E+ +F+
Sbjct: 26 PLEVNGGGVTIPIDSSKPNPNGYEYDNLYLDMNGIIHPCFHPEDKPSPTTFTEVFQCMFD 85
Query: 89 CIDRLFRIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKE 148
IDRLF +VRPRKLL+MAIDGVAPRAKMNQ R+RRFRA+K+
Sbjct: 86 YIDRLFVMVRPRKLLFMAIDGVAPRAKMNQ-------------------QRARRFRAAKD 126
Query: 149 TAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLN 208
AE AE ++RE+ +G LPP K FDSN ITPGT FMA LS L YYIH RLN
Sbjct: 127 AAEAAAEEEQLREEFEREGKKLPP-KVDSQVFDSNVITPGTEFMATLSFALRYYIHVRLN 185
Query: 209 NDPGWKGIKVILSDANVP 226
+DPGWK IKVILSDANVP
Sbjct: 186 SDPGWKNIKVILSDANVP 203
>sp|Q9FQ04|XRN4_ARATH 5'-3' exoribonuclease 4 OS=Arabidopsis thaliana GN=XRN4 PE=2 SV=1
Length = 947
Score = 208 bits (529), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 112/191 (58%), Positives = 131/191 (68%), Gaps = 20/191 (10%)
Query: 36 GQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLFR 95
G IP D ++PNPNG EFDNLYLDMNGIIHPC HPE KPAP D++ ++FE ID LF
Sbjct: 32 GDLIPVDITRPNPNGFEFDNLYLDMNGIIHPCFHPEGKPAPATYDDVFKSMFEYIDHLFT 91
Query: 96 IVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAEKIAE 155
+VRPRK+LY+AIDGVAPRAKMNQ RSRRFRA+K+ AE AE
Sbjct: 92 LVRPRKILYLAIDGVAPRAKMNQ-------------------QRSRRFRAAKDAAEAEAE 132
Query: 156 VARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDPGWKG 215
R+R+ +G IL KEK DSN ITPGTPFMA LS L YYI RLN++PGW+
Sbjct: 133 EERLRKDFEMEGQIL-SAKEKAETCDSNVITPGTPFMAILSVALQYYIQSRLNHNPGWRY 191
Query: 216 IKVILSDANVP 226
+KVILSD+NVP
Sbjct: 192 VKVILSDSNVP 202
>sp|Q5BFH3|XRN2_EMENI 5'-3' exoribonuclease 2 OS=Emericella nidulans (strain FGSC A4 /
ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rat1 PE=3
SV=3
Length = 1032
Score = 203 bits (517), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 104/200 (52%), Positives = 130/200 (65%), Gaps = 22/200 (11%)
Query: 30 LPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFEC 89
LPQEVNG++IP D + PNPNG E DNLYLDMNGI+HPCTHPE KP P +E EMM+ IF+
Sbjct: 25 LPQEVNGEEIPVDITGPNPNGEEMDNLYLDMNGIVHPCTHPEGKPPPANEQEMMIEIFKY 84
Query: 90 IDRLFRIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKET 149
DR+ +VRPRKLL +A+DGVAPRAKMNQ R+RRFR+++E
Sbjct: 85 TDRVVNMVRPRKLLMIAVDGVAPRAKMNQ-------------------QRARRFRSAQEA 125
Query: 150 A---EKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDR 206
EK E R+ K D + E+ +DSN ITPGTPFM L+A L Y+I +
Sbjct: 126 REQDEKKQEFQRMLAKQNGDKEQMLQEEVIQKTWDSNVITPGTPFMDILAASLRYWIAYK 185
Query: 207 LNNDPGWKGIKVILSDANVP 226
LN DP W+ +K+I+SDA VP
Sbjct: 186 LNTDPAWEKLKIIISDATVP 205
>sp|Q8WZX5|XRN2_NEUCR 5'-3' exoribonuclease 2 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rat-1
PE=3 SV=3
Length = 1072
Score = 201 bits (510), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 105/196 (53%), Positives = 126/196 (64%), Gaps = 23/196 (11%)
Query: 35 NGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLF 94
+G IP D++KPNPNG EFDNLYLDMNGI+HPC+HPED+PAPKDE+EMMV +F+ DR+
Sbjct: 31 DGTVIPVDATKPNPNGEEFDNLYLDMNGIVHPCSHPEDRPAPKDEEEMMVEVFKYTDRVV 90
Query: 95 RIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAEKIA 154
+VRPRKLL +A+DGVAPRAKMNQ RSRRFRA++E EK
Sbjct: 91 NMVRPRKLLMIAVDGVAPRAKMNQ-------------------QRSRRFRAAREAMEKEE 131
Query: 155 EVARIREKLLADG----CILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNND 210
+ + E L P E FDSN ITPGTPFM L+A L Y+ +LN D
Sbjct: 132 DKQKFVELLKKQNGKPQEEEPVEVVVKKAFDSNSITPGTPFMDILAASLRYWCSYKLNTD 191
Query: 211 PGWKGIKVILSDANVP 226
P W IKVI+SDA VP
Sbjct: 192 PAWANIKVIISDATVP 207
>sp|Q8TFZ1|XRN2_ASPFU 5'-3' exoribonuclease 2 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rat1 PE=3
SV=4
Length = 1058
Score = 200 bits (509), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 105/202 (51%), Positives = 133/202 (65%), Gaps = 25/202 (12%)
Query: 30 LPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFEC 89
LP EVNG++IP D +KPNPNG E DNLYLDMNGI+HPCTHPE KP P +E EMMV IF+
Sbjct: 25 LPYEVNGEEIPVDITKPNPNGEEMDNLYLDMNGIVHPCTHPEGKPPPANEQEMMVEIFKY 84
Query: 90 IDRLFRIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKET 149
DR+ +VRPRKLL +A+DGVAPRAKMNQ R+RRFR+++E
Sbjct: 85 TDRVVNMVRPRKLLMIAVDGVAPRAKMNQ-------------------QRARRFRSAQEA 125
Query: 150 AEKIAEVARIREKLLA--DGCILPPEKEK---GSHFDSNCITPGTPFMACLSACLHYYIH 204
E + R K+LA +G + E ++ +DSN ITPGTPFM L+A L Y+I
Sbjct: 126 KEADEKKEEFR-KMLAKQNGNKVDEELQEEVVKKTWDSNVITPGTPFMDILAASLRYWIA 184
Query: 205 DRLNNDPGWKGIKVILSDANVP 226
+LN DP W+ +K+I+SDA VP
Sbjct: 185 YKLNTDPAWEKLKIIISDATVP 206
>sp|Q2UCP5|XRN2_ASPOR 5'-3' exoribonuclease 2 OS=Aspergillus oryzae (strain ATCC 42149 /
RIB 40) GN=rat1 PE=3 SV=3
Length = 1035
Score = 199 bits (507), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 100/198 (50%), Positives = 129/198 (65%), Gaps = 21/198 (10%)
Query: 31 PQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECI 90
P EVNG++IP D+++PNPNG E DNLYLDMNGI+HPCTHPE KP P +E EMM+ IF
Sbjct: 26 PYEVNGEQIPVDTTRPNPNGEELDNLYLDMNGIVHPCTHPEGKPPPANEQEMMLEIFNYT 85
Query: 91 DRLFRIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETA 150
DR+ +VRPRKLL +A+DGVAPRAKMNQ R+RRFR+++E
Sbjct: 86 DRVVNMVRPRKLLMIAVDGVAPRAKMNQ-------------------QRARRFRSAQEAK 126
Query: 151 EKIAEVARIREKLL--ADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLN 208
E + R++ L + G E+ +DSN ITPGTPFM L+A L Y+I +LN
Sbjct: 127 EADEKKEEFRKQFLKKSKGDQEIHEEVIQKTWDSNVITPGTPFMDILAASLRYWIAYKLN 186
Query: 209 NDPGWKGIKVILSDANVP 226
DP W+ +K+I+SDA VP
Sbjct: 187 TDPAWEKLKIIISDATVP 204
>sp|Q9FQ03|XRN3_ARATH 5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3 PE=2 SV=1
Length = 1020
Score = 199 bits (507), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 113/191 (59%), Positives = 133/191 (69%), Gaps = 20/191 (10%)
Query: 36 GQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLFR 95
G KIP D+SKPNPN +E+DNLYLDMNGIIHPC HPED+P+P +E+ +F+ IDRLF
Sbjct: 31 GIKIPVDTSKPNPNNLEYDNLYLDMNGIIHPCFHPEDRPSPTTFEEVFQCMFDYIDRLFV 90
Query: 96 IVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAEKIAE 155
+VRPRKLLYMAIDGVAPRAKMNQ RSRRFR++K+ ++ AE
Sbjct: 91 MVRPRKLLYMAIDGVAPRAKMNQ-------------------QRSRRFRSAKDASDAAAE 131
Query: 156 VARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDPGWKG 215
R+RE+ +G LPP K FDSN ITPGT FM LS L YY+H RLN+D GWK
Sbjct: 132 EERLREEFEREGRRLPP-KVDSQVFDSNVITPGTEFMGVLSIALQYYVHLRLNHDVGWKN 190
Query: 216 IKVILSDANVP 226
IKVILSDANVP
Sbjct: 191 IKVILSDANVP 201
>sp|Q4HWE2|XRN2_GIBZE 5'-3' exoribonuclease 2 OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=RAT1 PE=3 SV=3
Length = 980
Score = 197 bits (500), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 96/196 (48%), Positives = 127/196 (64%), Gaps = 23/196 (11%)
Query: 35 NGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLF 94
+G IP D+++PNPNG EFDNLYLDMNGI+HPC+HPED+PAPKDE+EMM+ +F DR+
Sbjct: 31 DGSTIPVDTTRPNPNGEEFDNLYLDMNGIVHPCSHPEDRPAPKDEEEMMMEVFRYTDRVV 90
Query: 95 RIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAEKIA 154
+VRPRK+L +A+DGVAPRAKMNQ RSRRFR+++E EK
Sbjct: 91 NMVRPRKILMIAVDGVAPRAKMNQ-------------------QRSRRFRSAQEAQEKEQ 131
Query: 155 E----VARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNND 210
+ + ++++ + E FDSN ITPGTPFM L+ L Y+ +LN D
Sbjct: 132 DKQELIKMLKQQNGGNLSTESLETVTKKAFDSNSITPGTPFMDILALSLRYWCQYKLNTD 191
Query: 211 PGWKGIKVILSDANVP 226
PGW +K+I+SDA VP
Sbjct: 192 PGWAKLKIIISDATVP 207
>sp|Q74ZA0|XRN2_ASHGO 5'-3' exoribonuclease 2 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=RAT1 PE=3 SV=4
Length = 945
Score = 192 bits (489), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 96/196 (48%), Positives = 128/196 (65%), Gaps = 20/196 (10%)
Query: 31 PQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECI 90
PQ V+G K+P D S NPNG E DNLYLDMNGI+HPC+HPE+KPAP+ EDEM++A+FE
Sbjct: 26 PQVVDGVKLPIDYSAANPNG-ELDNLYLDMNGIVHPCSHPENKPAPETEDEMLLAVFEYT 84
Query: 91 DRLFRIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETA 150
+R+ + RPRK+L +A+DGVAPRAKMNQ RSRRFR++++
Sbjct: 85 NRVLNMARPRKVLMIAVDGVAPRAKMNQ-------------------QRSRRFRSARDAK 125
Query: 151 EKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNND 210
E AR+ + A G ++ + +D+N ITPGTPFM L+A L Y+ +L D
Sbjct: 126 LANEEKARVLAEREAYGEMIDDAVKAKKSWDTNAITPGTPFMDKLAAALRYWTSFKLATD 185
Query: 211 PGWKGIKVILSDANVP 226
PGWK ++VI+SDA VP
Sbjct: 186 PGWKNLQVIISDATVP 201
>sp|Q2GNZ6|XRN2_CHAGB 5'-3' exoribonuclease 2 OS=Chaetomium globosum (strain ATCC 6205 /
CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=RAT1
PE=3 SV=3
Length = 1039
Score = 192 bits (487), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 101/206 (49%), Positives = 130/206 (63%), Gaps = 42/206 (20%)
Query: 35 NGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLF 94
+G +P D+++PNPNG EFDNLYLDMNGI+HPC+HPED+PAP DE+EMMV +F+ +R+
Sbjct: 31 DGTVVPVDATQPNPNGEEFDNLYLDMNGIVHPCSHPEDRPAPSDEEEMMVEVFKYTERVV 90
Query: 95 RIVRPRKLLYMAI-DGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAEKI 153
+VRPRKLL +A+ DGVAPRAKMNQ RSRRFRA+++ EK
Sbjct: 91 NMVRPRKLLMIAVADGVAPRAKMNQ-------------------QRSRRFRAAQDAKEKE 131
Query: 154 AEVARIREKLLADGCILPPEKEKGS-------------HFDSNCITPGTPFMACLSACLH 200
+ ++ + L +KEKGS FDSN ITPGTPFM L+A L
Sbjct: 132 EDKQQLLKML---------QKEKGSTAKEEPIETVVKKAFDSNSITPGTPFMDILAASLR 182
Query: 201 YYIHDRLNNDPGWKGIKVILSDANVP 226
Y+ +LN DP W +KVI+SDA VP
Sbjct: 183 YWCAYKLNTDPAWAKMKVIISDATVP 208
>sp|P40848|XRN2_SCHPO 5'-3' exoribonuclease 2 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=dhp1 PE=1 SV=1
Length = 991
Score = 191 bits (484), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 103/192 (53%), Positives = 130/192 (67%), Gaps = 19/192 (9%)
Query: 35 NGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLF 94
+G +I D S PNPNG+E DNLYLDMNGI+HPC+HPED+PAP+ EDEMMVA+FE DR+
Sbjct: 31 DGTEIEPDLSLPNPNGVECDNLYLDMNGIVHPCSHPEDRPAPETEDEMMVAVFEYTDRIL 90
Query: 95 RIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAEKIA 154
+VRPR+LL++AIDGVAPRAKMNQ RSRRFR+S+E A K
Sbjct: 91 AMVRPRQLLFIAIDGVAPRAKMNQ-------------------QRSRRFRSSREAALKEE 131
Query: 155 EVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDPGWK 214
E+ E+ G + K +DSNCITPGTPFM L+ L YYI ++LN+DP W+
Sbjct: 132 ELQAFIEEAKQQGIPIDENATKKKSWDSNCITPGTPFMDTLAKSLRYYIINKLNSDPCWR 191
Query: 215 GIKVILSDANVP 226
++ ILSDA+VP
Sbjct: 192 NVRFILSDASVP 203
>sp|P0CL88|XRN2_CRYNJ 5'-3' exoribonuclease 2 OS=Cryptococcus neoformans var. neoformans
serotype D (strain JEC21 / ATCC MYA-565) GN=RAT1 PE=3
SV=1
Length = 1127
Score = 189 bits (479), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 95/187 (50%), Positives = 118/187 (63%), Gaps = 19/187 (10%)
Query: 40 PFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRP 99
P PNPNG E DNLYLDMNGI+HPCTHPE +PAP+ E+EMMV IF+ +R+ + RP
Sbjct: 40 PIRYENPNPNGFEVDNLYLDMNGIVHPCTHPEGRPAPETEEEMMVEIFKYTERVVNMCRP 99
Query: 100 RKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAEKIAEVARI 159
RK+L MAIDGVAPRAKMNQ RSRRFRA++E A+K E
Sbjct: 100 RKVLMMAIDGVAPRAKMNQ-------------------QRSRRFRAAQEAADKEEERREA 140
Query: 160 REKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDPGWKGIKVI 219
+ A G + E +D+N ITPGTPFM LS L Y++ +L DPGWK +K+I
Sbjct: 141 IKLFEAMGHAVSEETANHKSWDTNAITPGTPFMDLLSISLKYWVSHKLTTDPGWKDLKII 200
Query: 220 LSDANVP 226
LSD++VP
Sbjct: 201 LSDSSVP 207
>sp|P0CL89|XRN2_CRYNB 5'-3' exoribonuclease 2 OS=Cryptococcus neoformans var. neoformans
serotype D (strain B-3501A) GN=RAT1 PE=3 SV=1
Length = 1130
Score = 188 bits (478), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 95/187 (50%), Positives = 118/187 (63%), Gaps = 19/187 (10%)
Query: 40 PFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRP 99
P PNPNG E DNLYLDMNGI+HPCTHPE +PAP+ E+EMMV IF+ +R+ + RP
Sbjct: 40 PIRYENPNPNGFEVDNLYLDMNGIVHPCTHPEGRPAPETEEEMMVEIFKYTERVVNMCRP 99
Query: 100 RKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAEKIAEVARI 159
RK+L MAIDGVAPRAKMNQ RSRRFRA++E A+K E
Sbjct: 100 RKVLMMAIDGVAPRAKMNQ-------------------QRSRRFRAAQEAADKEEERREA 140
Query: 160 REKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDPGWKGIKVI 219
+ A G + E +D+N ITPGTPFM LS L Y++ +L DPGWK +K+I
Sbjct: 141 IKLFEAMGHAVSEETANHKSWDTNAITPGTPFMDLLSISLKYWVSHKLTTDPGWKDLKII 200
Query: 220 LSDANVP 226
LSD++VP
Sbjct: 201 LSDSSVP 207
>sp|Q02792|XRN2_YEAST 5'-3' exoribonuclease 2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAT1 PE=1 SV=3
Length = 1006
Score = 187 bits (474), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 98/203 (48%), Positives = 128/203 (63%), Gaps = 26/203 (12%)
Query: 27 LVSLPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAI 86
L PQ V+G +P D S NPNG E DNLYLDMNGI+HPC+HPE+KP P+ EDEM++A+
Sbjct: 22 LEEQPQIVDGVILPLDYSASNPNG-ELDNLYLDMNGIVHPCSHPENKPPPETEDEMLLAV 80
Query: 87 FECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRAS 146
FE +R+ + RPRK+L MA+DGVAPRAKMNQ R+RRFR++
Sbjct: 81 FEYTNRVLNMARPRKVLVMAVDGVAPRAKMNQ-------------------QRARRFRSA 121
Query: 147 KETA---EKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYI 203
++ E E+ R RE++ G I+ +DSN ITPGTPFM L+A L Y+
Sbjct: 122 RDAQIENEAREEIMRQREEV---GEIIDDAVRNKKTWDSNAITPGTPFMDKLAAALRYWT 178
Query: 204 HDRLNNDPGWKGIKVILSDANVP 226
+L DPGWK ++VI+SDA VP
Sbjct: 179 AFKLATDPGWKNLQVIISDATVP 201
>sp|Q4P149|XRN2_USTMA 5'-3' exoribonuclease 2 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=RAT1 PE=3 SV=3
Length = 1233
Score = 186 bits (473), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 102/189 (53%), Positives = 125/189 (66%), Gaps = 20/189 (10%)
Query: 39 IPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVR 98
+P D+S PNPNG EFD LYLDMNGI+HPCTHPE KPAP+ E+EMMV +F +R+ +VR
Sbjct: 39 LPLDTSTPNPNGEEFDCLYLDMNGIVHPCTHPEGKPAPETEEEMMVEVFAYTERVVNMVR 98
Query: 99 PRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAEKIAEVAR 158
PR+LL MAIDGVAPRAKMNQ RSRRFRA+KE EK E
Sbjct: 99 PRRLLMMAIDGVAPRAKMNQ-------------------QRSRRFRAAKEAREKHEEEQA 139
Query: 159 IREKLLADGC-ILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDPGWKGIK 217
+ A G EK+ +DSN ITPGTPFM L+A L Y++ ++N+DPGWK I+
Sbjct: 140 ALAEWKAKGLGATDDEKKSKRAWDSNAITPGTPFMDLLAASLRYWVAQKINSDPGWKDIQ 199
Query: 218 VILSDANVP 226
VI+SDA+VP
Sbjct: 200 VIISDASVP 208
>sp|Q6FKN6|XRN2_CANGA 5'-3' exoribonuclease 2 OS=Candida glabrata (strain ATCC 2001 / CBS
138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RAT1 PE=3
SV=3
Length = 1018
Score = 183 bits (465), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 96/210 (45%), Positives = 133/210 (63%), Gaps = 27/210 (12%)
Query: 21 PYSFASLVSLPQE-VNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDE 79
P + ++ PQ+ V+G +P D + PNPNG E DNLYLDMNGI+HPC+HPE+KP P+ E
Sbjct: 15 PKIISPVLEEPQQLVDGVALPIDYAGPNPNG-ELDNLYLDMNGIVHPCSHPENKPPPETE 73
Query: 80 DEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMR 139
D+M++A+FE +R+ + RPRK+L +A+DGVAPRAKMNQ R
Sbjct: 74 DDMLLAVFEYTNRVLNMARPRKVLVIAVDGVAPRAKMNQ-------------------QR 114
Query: 140 SRRFRASKETA---EKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLS 196
SRRFR++++ E E+ R +E+L G I+ + +DSN ITPGTPFM L+
Sbjct: 115 SRRFRSARDAEIENEAREEIMRQKEQL---GQIIDDSVKNKKTWDSNAITPGTPFMDKLA 171
Query: 197 ACLHYYIHDRLNNDPGWKGIKVILSDANVP 226
L Y+ +L DPGWK ++VI+SDA VP
Sbjct: 172 IALRYWTAFKLATDPGWKNLQVIISDATVP 201
>sp|Q6C961|XRN2_YARLI 5'-3' exoribonuclease 2 OS=Yarrowia lipolytica (strain CLIB 122 / E
150) GN=RAT1 PE=3 SV=3
Length = 1010
Score = 181 bits (458), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 98/212 (46%), Positives = 128/212 (60%), Gaps = 41/212 (19%)
Query: 34 VNGQKIP-FDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDR 92
V+G++IP D S PNPNG E DNLYLDMNGI+HPCTHPE + AP EDEM++A+F+ +R
Sbjct: 29 VDGEEIPGSDYSAPNPNG-ELDNLYLDMNGIVHPCTHPEGEEAPPSEDEMLLAVFKYTER 87
Query: 93 LFRIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAEK 152
+ + RPRK+L MAIDGVAPRAKMNQ R+RRFR++K+ A
Sbjct: 88 VLNVCRPRKVLMMAIDGVAPRAKMNQ-------------------QRARRFRSAKDAA-- 126
Query: 153 IAEVARIREKLLADGCILPPEKEKG------------------SHFDSNCITPGTPFMAC 194
I + + +L A L EKG +DSN ITPGTPFM
Sbjct: 127 IEAESTLESELKAKTIELQSSGEKGKSLETILDEFKQGLVNKPGKWDSNAITPGTPFMEK 186
Query: 195 LSACLHYYIHDRLNNDPGWKGIKVILSDANVP 226
L+A L Y++ +LN +PGW+ +KV++SDA VP
Sbjct: 187 LAAALRYWVGYKLNTEPGWRDLKVVISDATVP 218
>sp|Q6CKX0|XRN2_KLULA 5'-3' exoribonuclease 2 OS=Kluyveromyces lactis (strain ATCC 8585 /
CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=RAT1 PE=3 SV=3
Length = 992
Score = 176 bits (446), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 90/195 (46%), Positives = 122/195 (62%), Gaps = 26/195 (13%)
Query: 35 NGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLF 94
+G ++P D S NPNG E DNLYLDMNGI+HPC+HPE+KP P+ EDEM++A+FE +R+
Sbjct: 30 DGVQLPLDYSSANPNG-ELDNLYLDMNGIVHPCSHPENKPPPETEDEMLLAVFEYTNRVL 88
Query: 95 RIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETA---E 151
+ RPRK+L +A+DGVAPRAKMNQ R+RRFR++++ E
Sbjct: 89 NMARPRKVLMIAVDGVAPRAKMNQ-------------------QRARRFRSARDAKLQNE 129
Query: 152 KIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDP 211
+V R RE G + + +DSN ITPGTPFM L+ L Y+ +L DP
Sbjct: 130 AREQVLREREDY---GETIDENVKSKKTWDSNAITPGTPFMDKLATALRYWTSFKLATDP 186
Query: 212 GWKGIKVILSDANVP 226
GWK +++I+SDA VP
Sbjct: 187 GWKNLQIIISDATVP 201
>sp|Q5AMG5|XRN2_CANAL 5'-3' exoribonuclease 2 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=RAT1 PE=3 SV=3
Length = 968
Score = 169 bits (429), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 90/196 (45%), Positives = 121/196 (61%), Gaps = 26/196 (13%)
Query: 32 QEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECID 91
E+ G K PNPNG E DNLYLDMNGI+HPC+HPE K P+ EDEM + IF+ D
Sbjct: 27 HEIGGAKY----ENPNPNG-EIDNLYLDMNGIVHPCSHPEHKKPPETEDEMFLDIFKYTD 81
Query: 92 RLFRIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAE 151
R+ + RPRK+L +A+DGVAPRAKMNQ R+RRFRA+K+
Sbjct: 82 RVLMMARPRKVLMIAVDGVAPRAKMNQ-------------------QRARRFRAAKDAEL 122
Query: 152 KIAEVA-RIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNND 210
K ++ ++E+ L G I+ + +DSN ITPGTPFM L+ L Y++ +L++D
Sbjct: 123 KAKQLEIEVQERELR-GEIINDAIKGKKQWDSNAITPGTPFMDRLAEALRYWVAYKLSSD 181
Query: 211 PGWKGIKVILSDANVP 226
PGW ++VI+SDA VP
Sbjct: 182 PGWANLQVIISDATVP 197
>sp|Q6BNU7|XRN2_DEBHA 5'-3' exoribonuclease 2 OS=Debaryomyces hansenii (strain ATCC 36239
/ CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=RAT1
PE=3 SV=4
Length = 1003
Score = 166 bits (419), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/184 (48%), Positives = 114/184 (61%), Gaps = 22/184 (11%)
Query: 44 SKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLL 103
S PNPNG E DNLYLDMNGI+HPC+HPE K P+ EDEM + +F+ DR+ + RPRK+L
Sbjct: 36 SDPNPNG-ELDNLYLDMNGIVHPCSHPEHKLPPETEDEMFLDVFKYTDRVLLMARPRKVL 94
Query: 104 YMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAEKIAEVAR-IREK 162
+A+DGVAPRAKMNQ RSRRFR++++ E R IRE+
Sbjct: 95 MIAVDGVAPRAKMNQ-------------------QRSRRFRSAQDAKIAHEEKERQIRER 135
Query: 163 LLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDPGWKGIKVILSD 222
I K K S +DSN ITPGTPFM L+ L Y++ +L DPGW ++VI+SD
Sbjct: 136 ESRGESIDDAIKGKKS-WDSNAITPGTPFMDSLAQALRYWVAYKLATDPGWANLQVIISD 194
Query: 223 ANVP 226
A VP
Sbjct: 195 ATVP 198
>sp|P40383|XRN1_SCHPO 5'-3' exoribonuclease 1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=exo2 PE=1 SV=1
Length = 1328
Score = 147 bits (372), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 106/177 (59%), Gaps = 33/177 (18%)
Query: 52 EFDNLYLDMNGIIHPCTHPEDKPA--PKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDG 109
EFDNLYLDMNGI+H CTH D + P E+EM +AIF I+ LF ++P+KLLYMA+DG
Sbjct: 28 EFDNLYLDMNGILHNCTHKNDDHSSPPLPEEEMYIAIFNYIEHLFEKIKPKKLLYMAVDG 87
Query: 110 VAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAEKIAEVARIREKLLADGCI 169
APRAKMNQ RSRRFR +K+ A AR++ + +G
Sbjct: 88 CAPRAKMNQ-------------------QRSRRFRTAKD-----AHDARLKAE--RNGED 121
Query: 170 LPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDPGWKGIKVILSDANVP 226
P E+ FDSNCITPGT FM +S L+Y+IH ++ ND W+ I+VI S + P
Sbjct: 122 FPEEQ-----FDSNCITPGTTFMERVSRQLYYFIHKKVTNDSQWQNIEVIFSGHDCP 173
>sp|P97789|XRN1_MOUSE 5'-3' exoribonuclease 1 OS=Mus musculus GN=Xrn1 PE=1 SV=1
Length = 1719
Score = 145 bits (365), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 76/177 (42%), Positives = 102/177 (57%), Gaps = 32/177 (18%)
Query: 52 EFDNLYLDMNGIIHPCTHPEDKPAP--KDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDG 109
EFDNLYLDMNGIIH C+HP D +D++ IF ++ LFRI++PRK+ +MA+DG
Sbjct: 28 EFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDG 87
Query: 110 VAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAEKIAEVARIREKLLADGCI 169
VAPRAKMNQ R RRFR++KE +KI +K + G
Sbjct: 88 VAPRAKMNQ-------------------QRGRRFRSAKEAEDKI-------KKAIEKGET 121
Query: 170 LPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDPGWKGIKVILSDANVP 226
LP E + FDSNCITPGT FMA L L Y+++ +++ D W+G+ + S P
Sbjct: 122 LPTE----ARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETP 174
>sp|Q8IZH2|XRN1_HUMAN 5'-3' exoribonuclease 1 OS=Homo sapiens GN=XRN1 PE=1 SV=1
Length = 1706
Score = 144 bits (364), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/177 (42%), Positives = 102/177 (57%), Gaps = 32/177 (18%)
Query: 52 EFDNLYLDMNGIIHPCTHPEDKPAP--KDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDG 109
EFDNLYLDMNGIIH C+HP D +D++ IF ++ LFRI++PRK+ +MA+DG
Sbjct: 28 EFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDG 87
Query: 110 VAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAEKIAEVARIREKLLADGCI 169
VAPRAKMNQ R RRFR++KE +KI +K + G
Sbjct: 88 VAPRAKMNQ-------------------QRGRRFRSAKEAEDKI-------KKAIEKGET 121
Query: 170 LPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDPGWKGIKVILSDANVP 226
LP E + FDSNCITPGT FMA L L Y+++ +++ D W+G+ + S P
Sbjct: 122 LPTE----ARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETP 174
>sp|P22147|XRN1_YEAST 5'-3' exoribonuclease 1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=XRN1 PE=1 SV=1
Length = 1528
Score = 143 bits (361), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 80/197 (40%), Positives = 108/197 (54%), Gaps = 43/197 (21%)
Query: 32 QEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPK--DEDEMMVAIFEC 89
Q + G +IP EFDNLYLDMN I+H CTH D K E+E+ I
Sbjct: 19 QLIEGTQIP-----------EFDNLYLDMNSILHNCTHGNDDDVTKRLTEEEVFAKICTY 67
Query: 90 IDRLFRIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKET 149
ID LF+ ++P+K+ YMAIDGVAPRAKMNQ R+RRFR + +
Sbjct: 68 IDHLFQTIKPKKIFYMAIDGVAPRAKMNQ-------------------QRARRFRTAMDA 108
Query: 150 AEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNN 209
+ + +K + +G +P KG FDSN ITPGT FMA L+ L Y+IHD+++N
Sbjct: 109 EKAL-------KKAIENGDEIP----KGEPFDSNSITPGTEFMAKLTKNLQYFIHDKISN 157
Query: 210 DPGWKGIKVILSDANVP 226
D W+ +++I S VP
Sbjct: 158 DSKWREVQIIFSGHEVP 174
>sp|Q197A1|EX0N_IIV3 Putative exonuclease 059L OS=Invertebrate iridescent virus 3
GN=IIV3-059L PE=3 SV=1
Length = 560
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 71/188 (37%), Gaps = 67/188 (35%)
Query: 56 LYLDMNGIIHPCTHPEDK--------------PAPKDEDEMMVA--IFECIDRLFRIVRP 99
L LD+NGIIH K P K E +++V + ID L +V P
Sbjct: 38 LLLDLNGIIHTSCQKIYKYGSFEPKNLLKKSPPVYKGEKDVLVYEDVLASIDSLVALVEP 97
Query: 100 RKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAEKIAEVARI 159
R+L+ + IDGVAP +K Q R RRF K
Sbjct: 98 RELV-LCIDGVAPVSKQIQ-------------------QRQRRFITHK------------ 125
Query: 160 REKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDPGWKGIKVI 219
DG FDSNCI+PGT F+ L L ++ +L + W + I
Sbjct: 126 -----TDGG-----------FDSNCISPGTEFLFQLGLYLKTHLESKLEKE--WLNVSTI 167
Query: 220 -LSDANVP 226
D+ VP
Sbjct: 168 YFMDSLVP 175
>sp|Q9QSK5|EXON_IIV6 Putative exonuclease 012L OS=Invertebrate iridescent virus 6
GN=IIV6-012L PE=3 SV=1
Length = 624
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 70/177 (39%), Gaps = 47/177 (26%)
Query: 49 NGMEFDNLYLDMNGIIH----------PCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVR 98
N D L +DMNGIIH + P++ K ++ + IDR+ +
Sbjct: 26 NSQCIDVLLIDMNGIIHNSAQEVYGYGSFSFPKENACDK---KVYSLVCRQIDRMVIQFK 82
Query: 99 PRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAEKIAEVAR 158
P++L+ + IDGVAPR+K Q R RRF A+ + + E
Sbjct: 83 PKELI-LCIDGVAPRSKQIQ-------------------QRQRRFLAAHDRKKPGTEFN- 121
Query: 159 IREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDPGWKG 215
K S FDSN I+PGT FM L + IH + P + G
Sbjct: 122 -----------FDCNKGNTSKFDSNSISPGTEFMHNLGRYID--IHIKKKQKPAFTG 165
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,763,145
Number of Sequences: 539616
Number of extensions: 3764640
Number of successful extensions: 7982
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 7886
Number of HSP's gapped (non-prelim): 40
length of query: 226
length of database: 191,569,459
effective HSP length: 113
effective length of query: 113
effective length of database: 130,592,851
effective search space: 14756992163
effective search space used: 14756992163
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)