Query psy6081
Match_columns 226
No_of_seqs 147 out of 418
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 17:10:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6081.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6081hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fqd_A Protein DHP1, 5'-3' exo 100.0 3E-68 1E-72 532.7 13.5 191 17-226 14-206 (899)
2 3pie_A 5'->3' exoribonuclease 100.0 1.4E-55 4.6E-60 450.7 15.2 145 52-226 28-174 (1155)
3 2y35_A LD22664P; hydrolase-DNA 100.0 1E-53 3.5E-58 438.0 10.7 145 51-226 27-173 (1140)
4 1b43_A Protein (FEN-1); nuclea 85.7 0.5 1.7E-05 42.1 3.3 61 55-119 23-91 (340)
5 1rxw_A Flap structure-specific 73.0 3.4 0.00012 36.7 4.4 58 55-117 23-89 (336)
6 1exn_A 5'-exonuclease, 5'-nucl 71.1 4.9 0.00017 35.8 5.0 51 55-112 21-71 (290)
7 2izo_A FEN1, flap structure-sp 68.9 4.3 0.00015 36.3 4.1 59 55-117 20-86 (346)
8 1a76_A Flap endonuclease-1 pro 61.3 4.6 0.00016 35.6 2.8 60 55-119 23-91 (326)
9 3ik5_A Protein NEF; protein-pr 54.8 5.6 0.00019 32.7 2.0 20 11-30 66-85 (143)
10 2kfe_A Meucin-24; alpha-helix, 53.3 10 0.00035 22.9 2.5 21 188-209 3-23 (26)
11 3ory_A Flap endonuclease 1; hy 49.6 24 0.00082 32.0 5.6 60 55-119 37-105 (363)
12 3h7i_A Ribonuclease H, RNAse H 39.9 23 0.00079 32.0 3.8 56 54-110 14-73 (305)
13 3q8k_A Flap endonuclease 1; he 37.6 13 0.00046 33.3 1.9 58 55-117 29-94 (341)
14 3rea_A Protein NEF; HIV-1 NEF, 37.0 13 0.00043 31.2 1.5 19 12-30 87-105 (166)
15 1ul1_X Flap endonuclease-1; pr 32.6 22 0.00075 32.2 2.5 59 55-117 29-94 (379)
16 4ann_A ESSB; membrane protein, 28.6 69 0.0024 27.3 4.8 43 51-93 105-150 (215)
17 4ano_A ESSB; membrane protein, 24.7 81 0.0028 26.8 4.5 42 51-92 110-154 (219)
18 4rxn_A Rubredoxin; electron tr 21.8 25 0.00086 24.1 0.6 12 182-193 21-32 (54)
No 1
>3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex, exonuclease, hydrolase, mRNA proces nuclease, nucleus, rRNA processing, transcription; 2.20A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3e-68 Score=532.73 Aligned_cols=191 Identities=54% Similarity=0.936 Sum_probs=178.1
Q ss_pred CCCCCccccccccc-cccc-CCccccCCCCCCCCCCCccCeEEEecccccccccCCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy6081 17 QDSKPYSFASLVSL-PQEV-NGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLF 94 (226)
Q Consensus 17 ~~~~p~~~~~~~~~-p~~~-~g~~~p~d~~~pn~n~~~~DnLYLDmNgIIH~c~h~~~~~~~~~e~e~~~~If~yID~Lv 94 (226)
++|||+++++++|+ |+++ +|..+|+|.++|||||.+|||||||||||||+|+|+++.+.+.||++||.+||+|||+||
T Consensus 14 s~rYP~i~~~~~e~~~~~~~~g~~~p~d~~~pnpng~e~DnLYlDmNgIIH~c~h~~~~~~~~te~e~~~~If~yid~l~ 93 (899)
T 3fqd_A 14 SRKFAKVITPVIEAPTEKLPDGTEIEPDLSLPNPNGVECDNLYLDMNGIVHPCSHPEDRPAPETEDEMMVAVFEYTDRIL 93 (899)
T ss_dssp HHHCGGGEEECCCCCCEECTTSCEECCCTTSCCTTSSCEEEEEEETHHHHHHHHSCSSSCCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHCCccchhhcccccccccCCccccccccCCCCCCcccceEEEecchhhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 46999999999996 7777 899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccceEEEEEeCCCCccccccccccccccccCCCchhhhhhhhhhhhhcHHHHHHHHHHHHHHHHHHhcCCCCCCCc
Q psy6081 95 RIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAEKIAEVARIREKLLADGCILPPEK 174 (226)
Q Consensus 95 ~iVrPrKllylAiDGVAPrAKmnQQ~~~~~~~~~~~~~~~~~~~RsRRfrsake~~e~~~~~~~~~~~l~~~g~~lp~~~ 174 (226)
.+|||||+||||||||||||||||| |+||||++++++++.++.+++++++.++|...+.+.
T Consensus 94 ~~vrPrklly~AiDGVAPrAKmnQQ-------------------RsRRfrsa~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 154 (899)
T 3fqd_A 94 AMVRPRQLLFIAIDGVAPRAKMNQQ-------------------RSRRFRSSREAALKEEELQAFIEEAKQQGIPIDENA 154 (899)
T ss_dssp HHHCEEEEEEEECCCCCCHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCHHH
T ss_pred HHcCcceeEEEeecCCCCchHHHHH-------------------HHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCcccc
Confidence 9999999999999999999999999 999999999998887777788888888894333222
Q ss_pred ccCCCCCCCccCCCChhHHHHHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCC
Q psy6081 175 EKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDPGWKGIKVILSDANVP 226 (226)
Q Consensus 175 ~~~~~fDsN~ITPGT~FM~~L~~~L~~yI~~kl~~dp~W~~i~VI~Sds~VP 226 (226)
..+..||||||||||+||.+|+.+|+|||++||++||+|++++|||||++||
T Consensus 155 ~~~~~fDsN~ITPGT~FM~~L~~~L~~~i~~kl~~dp~W~~~~VIlSd~~vP 206 (899)
T 3fqd_A 155 TKKKSWDSNCITPGTPFMDTLAKSLRYYIINKLNSDPCWRNVRFILSDASVP 206 (899)
T ss_dssp HSCCCCCGGGSSTTSHHHHHHHHHHHHHHHHHHTSCGGGTTCEEEEECTTSC
T ss_pred ccccCCCcCccCCccHHHHHHHHHHHHHHHHHhhcCcccccceEEEeCCCCC
Confidence 3568899999999999999999999999999999999999999999999998
No 2
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=100.00 E-value=1.4e-55 Score=450.74 Aligned_cols=145 Identities=52% Similarity=0.929 Sum_probs=133.5
Q ss_pred ccCeEEEecccccccccCCCCCC--CCCCHHHHHHHHHHHHHHHHhhhcccceEEEEEeCCCCccccccccccccccccC
Q psy6081 52 EFDNLYLDMNGIIHPCTHPEDKP--APKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDR 129 (226)
Q Consensus 52 ~~DnLYLDmNgIIH~c~h~~~~~--~~~~e~e~~~~If~yID~Lv~iVrPrKllylAiDGVAPrAKmnQQ~~~~~~~~~~ 129 (226)
+|||||||||||||+|+|+++.+ .+.+|++||.+||+|||+||++|||||+|||||||||||||||||
T Consensus 28 e~DnLYlDmNgIIH~c~h~~~~~~~~~~te~e~~~~if~yid~l~~~vrPrkllyiAiDGVAPrAKmnqQ---------- 97 (1155)
T 3pie_A 28 EFDNLYLDMNSILHNCTHGDGSEVNSRLSEEEVYSKIFSYIDHLFHTIKPKQTFYMAIDGVAPRAKMNQQ---------- 97 (1155)
T ss_pred cCCeEEEecccceeeeecCCCCccccCCCHHHHHHHHHHHHHHHHHhcCcceEEEEEecCCCChhHHHHH----------
Confidence 89999999999999999999876 689999999999999999999999999999999999999999999
Q ss_pred CCchhhhhhhhhhhhhcHHHHHHHHHHHHHHHHHHhcCCCCCCCcccCCCCCCCccCCCChhHHHHHHHHHHHHHHHhcC
Q psy6081 130 GNYSTWQLMRSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNN 209 (226)
Q Consensus 130 ~~~~~~~~~RsRRfrsake~~e~~~~~~~~~~~l~~~g~~lp~~~~~~~~fDsN~ITPGT~FM~~L~~~L~~yI~~kl~~ 209 (226)
|+||||++++++++ .++..+.|..+|. +..||||||||||+||.+|+.+|+|||++|+++
T Consensus 98 ---------R~RRfrsa~~~~~~-------~~~~~~~g~~~~~----~~~fdsn~ITPGT~FM~~L~~~L~~~i~~k~~~ 157 (1155)
T 3pie_A 98 ---------RARRFRTAMDAEKA-------LQKAIENGDELPK----GEPFDSNAITPGTEFMAKLTENLKYFIHDKITN 157 (1155)
T ss_pred ---------HHHHHHhhhhhhHH-------HHHHHhcCCcCCc----ccccccccccCCcHHHHHHHHHHHHHHHHHhhC
Confidence 99999999986432 2234567877663 478999999999999999999999999999999
Q ss_pred CCCCCCcEEEEcCCCCC
Q psy6081 210 DPGWKGIKVILSDANVP 226 (226)
Q Consensus 210 dp~W~~i~VI~Sds~VP 226 (226)
||.|++++|||||++||
T Consensus 158 d~~w~~~~vi~S~~~vP 174 (1155)
T 3pie_A 158 DTRWQNVKVIFSGHEVP 174 (1155)
T ss_pred CcCccccEEEEeCCCCC
Confidence 99999999999999998
No 3
>2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease 5'-3', R interference; 3.20A {Drosophila melanogaster}
Probab=100.00 E-value=1e-53 Score=438.00 Aligned_cols=145 Identities=46% Similarity=0.895 Sum_probs=123.7
Q ss_pred CccCeEEEecccccccccCCCCCCC--CCCHHHHHHHHHHHHHHHHhhhcccceEEEEEeCCCCcccccccccccccccc
Q psy6081 51 MEFDNLYLDMNGIIHPCTHPEDKPA--PKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYD 128 (226)
Q Consensus 51 ~~~DnLYLDmNgIIH~c~h~~~~~~--~~~e~e~~~~If~yID~Lv~iVrPrKllylAiDGVAPrAKmnQQ~~~~~~~~~ 128 (226)
++|||||||||||||+|+|+++.+. +.+|++||++||+|||+||++|||||+|||||||||||||||||
T Consensus 27 ~e~DnLYlDmNgIIH~c~h~~~~~~~~~~~e~e~~~~if~yid~l~~~vrPrkll~iAiDGvAPrAKmnqQ--------- 97 (1140)
T 2y35_A 27 PEFDNLYLDMNGIVHNCSHPDDNNIHFHLEEEQIFQEIFNYVDKLFYLIKPQRLFFLSVDGVAPRAKMNQQ--------- 97 (1140)
T ss_dssp CCCSEEEEEHHHHHHHHHCC------CCCCHHHHHHHHHHHHHHHHHHHCCSSEEEEECCCSCCHHHHHHH---------
T ss_pred CcCCeEEEecchhhhhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHheeccceeEEEEecCCCchhHHHHH---------
Confidence 3899999999999999999987654 47999999999999999999999999999999999999999999
Q ss_pred CCCchhhhhhhhhhhhhcHHHHHHHHHHHHHHHHHHhcCCCCCCCcccCCCCCCCccCCCChhHHHHHHHHHHHHHHHhc
Q psy6081 129 RGNYSTWQLMRSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLN 208 (226)
Q Consensus 129 ~~~~~~~~~~RsRRfrsake~~e~~~~~~~~~~~l~~~g~~lp~~~~~~~~fDsN~ITPGT~FM~~L~~~L~~yI~~kl~ 208 (226)
|+||||+++++++.. ++..+.|... ....||||||||||+||.+|+.+|++||++|++
T Consensus 98 ----------R~RRfrsa~~~~~~~-------~~~~~~g~~~-----~~~~fdsn~ITPGT~FM~~l~~~L~~~i~~k~~ 155 (1140)
T 2y35_A 98 ----------RSRRFRTAREAEQQE-------AKAAQRGELR-----EHERFDSNCITPGTEFMVRLQEGLRAFLKTKIS 155 (1140)
T ss_dssp ----------HHHHHHHHHHHHHHH-------HHHHHC------------CCCSGGGSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHhhhhhhhhhhH-------HHHhhcCCcc-----ccccCCccccCCCcHHHHHHHHHHHHHHHHHhc
Confidence 999999999875322 2233455432 347899999999999999999999999999999
Q ss_pred CCCCCCCcEEEEcCCCCC
Q psy6081 209 NDPGWKGIKVILSDANVP 226 (226)
Q Consensus 209 ~dp~W~~i~VI~Sds~VP 226 (226)
+||.|++++|||||++||
T Consensus 156 ~d~~w~~~~Vi~S~~~vP 173 (1140)
T 2y35_A 156 TDPLWQRCTVILSGQEAP 173 (1140)
T ss_dssp HCGGGSSSEEEEECSSSC
T ss_pred cCccccceEEEEeCCCCC
Confidence 999999999999999998
No 4
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=85.69 E-value=0.5 Score=42.13 Aligned_cols=61 Identities=16% Similarity=0.150 Sum_probs=35.5
Q ss_pred eEEEecccccccccCCC----CCCC----CCCHHHHHHHHHHHHHHHHhhhcccceEEEEEeCCCCccccccc
Q psy6081 55 NLYLDMNGIIHPCTHPE----DKPA----PKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQP 119 (226)
Q Consensus 55 nLYLDmNgIIH~c~h~~----~~~~----~~~e~e~~~~If~yID~Lv~iVrPrKllylAiDGVAPrAKmnQQ 119 (226)
-|-||.++.||.+.|.- ..+. -.... -+..+|..+-+|+. .|-+ +++++||.+|..|....
T Consensus 23 ~l~ID~~~~l~r~~~a~~~~~~~~l~~~~G~~t~-~l~g~~~~l~~ll~--~~i~-pv~VFDG~~~~~K~~~~ 91 (340)
T 1b43_A 23 KIAIDALNAIYQFLSTIRQKDGTPLMDSKGRITS-HLSGLFYRTINLME--AGIK-PVYVFDGEPPEFKKKEL 91 (340)
T ss_dssp EEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCH-HHHHHHHHHHHHHH--TTCE-EEEEECCSCCCCSSCSS
T ss_pred EEEEEhHHHHHHHHHHhccccCCccccccCCchH-HHHHHHHHHHHHHh--CCCE-EEEEecCCCchhhhhhH
Confidence 68899999999875521 1111 01111 22233434444443 5555 56789999998876655
No 5
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=72.97 E-value=3.4 Score=36.68 Aligned_cols=58 Identities=16% Similarity=0.232 Sum_probs=33.3
Q ss_pred eEEEecccccccccCCCC----CCC----CCCHHHHHHHHHHHHHHHHh-hhcccceEEEEEeCCCCccccc
Q psy6081 55 NLYLDMNGIIHPCTHPED----KPA----PKDEDEMMVAIFECIDRLFR-IVRPRKLLYMAIDGVAPRAKMN 117 (226)
Q Consensus 55 nLYLDmNgIIH~c~h~~~----~~~----~~~e~e~~~~If~yID~Lv~-iVrPrKllylAiDGVAPrAKmn 117 (226)
-|-||.++++|-+.|.-. .+. -.... .+..++..+-+|+. -++| ++++||..|..|-.
T Consensus 23 ~l~IDg~~~l~r~~~a~~~~~~~~l~~~~G~~t~-a~~g~~~~l~~ll~~~i~P----v~vFDg~~~~~R~~ 89 (336)
T 1rxw_A 23 KIAVDAFNTLYQFISIIRQPDGTPLKDSQGRITS-HLSGILYRVSNMVEVGIRP----VFVFDGEPPEFKKA 89 (336)
T ss_dssp EEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCH-HHHHHHHHHHHHHHHTCEE----EEEECCSCCGGGHH
T ss_pred EEEEEhHHHHHHHHHhhccccCCcccccCCCccH-HHHHHHHHHHHHHHCCCEE----EEEEcCCCCccccc
Confidence 688999999999776310 010 01111 22233333334443 3467 89999999866643
No 6
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=71.07 E-value=4.9 Score=35.76 Aligned_cols=51 Identities=16% Similarity=0.145 Sum_probs=37.8
Q ss_pred eEEEecccccccccCCCCCCCCCCHHHHHHHHHHHHHHHHhhhcccceEEEEEeCCCC
Q psy6081 55 NLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAP 112 (226)
Q Consensus 55 nLYLDmNgIIH~c~h~~~~~~~~~e~e~~~~If~yID~Lv~iVrPrKllylAiDGVAP 112 (226)
-|-||.++++|-+.|..+. .| ....++..|-+|+...+|..+ .+|+||..|
T Consensus 21 lllIDg~~llyRa~~~~~G-~p-----av~Gf~~~l~~ll~~~~p~~~-vvvFD~~~~ 71 (290)
T 1exn_A 21 LMIVDGTNLGFRFKHNNSK-KP-----FASSYVSTIQSLAKSYSARTT-IVLGDKGKS 71 (290)
T ss_dssp EEEEEHHHHHHHHHHHCSS-SC-----CHHHHHHHHHHHHHHTTEEEE-EEECCBSCC
T ss_pred EEEEECcHHHHHHHhCCCC-ch-----HHHHHHHHHHHHHHHcCCCeE-EEEEcCCCc
Confidence 5789999999999873222 12 455677788888888889876 479998755
No 7
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=68.95 E-value=4.3 Score=36.28 Aligned_cols=59 Identities=15% Similarity=0.189 Sum_probs=30.6
Q ss_pred eEEEecccccccccCCCCC----CCC---CCHHHHHHHHHHHHHHHHhh-hcccceEEEEEeCCCCccccc
Q psy6081 55 NLYLDMNGIIHPCTHPEDK----PAP---KDEDEMMVAIFECIDRLFRI-VRPRKLLYMAIDGVAPRAKMN 117 (226)
Q Consensus 55 nLYLDmNgIIH~c~h~~~~----~~~---~~e~e~~~~If~yID~Lv~i-VrPrKllylAiDGVAPrAKmn 117 (226)
-|-||.++.+|-+.|.-.. +.. -..-..+..+|..+-+|+.. ++| ++++||..|..|-.
T Consensus 20 ~l~IDg~~~l~r~~~a~~~~~g~~l~~~~G~~t~al~g~~~~~~~ll~~~i~P----v~vFDG~~~~~r~~ 86 (346)
T 2izo_A 20 RVSIDGYNALYQFLAAIRQPDGTPLMDSQGRVTSHLSGLFYRTINILEEGVIP----IYVFDGKPPEQKSE 86 (346)
T ss_dssp EEEEEHHHHHHHHHHSCCCC---CCBCSSSCBCHHHHHHHHHHHHHHHHTEEE----EEEECC--------
T ss_pred EEEEEhHHHHHHHHHhccccccccccccCCCccHHHHHHHHHHHHHHHCCCcE----EEEECCCCcchhhh
Confidence 5789999999987653210 100 00112344555555566665 788 68999998865543
No 8
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=61.29 E-value=4.6 Score=35.64 Aligned_cols=60 Identities=15% Similarity=0.144 Sum_probs=34.6
Q ss_pred eEEEecccccccccCCC----CCCC----CCCHHHHHHHHHHHHHHH-HhhhcccceEEEEEeCCCCccccccc
Q psy6081 55 NLYLDMNGIIHPCTHPE----DKPA----PKDEDEMMVAIFECIDRL-FRIVRPRKLLYMAIDGVAPRAKMNQP 119 (226)
Q Consensus 55 nLYLDmNgIIH~c~h~~----~~~~----~~~e~e~~~~If~yID~L-v~iVrPrKllylAiDGVAPrAKmnQQ 119 (226)
-|-||.++.+|-+.|.- ..+. -..... +..++..+-+| ..-++| ++++||..|..|-...
T Consensus 23 ~l~IDg~~~l~r~~~a~~~~~~~~l~~~~G~~t~~-l~g~~~~l~~ll~~~i~P----v~vFDG~~~~~k~~~~ 91 (326)
T 1a76_A 23 KVAIDGMNALYQFLTSIRLRDGSPLRNRKGEITSA-YNGVFYKTIHLLENDITP----IWVFDGEPPKLKEKTR 91 (326)
T ss_dssp EEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCHH-HHHHHHHHHHHHHTTCEE----EEEECCCSSCCCCSSC
T ss_pred EEEEEhHHHHHHHHHhhccccccccccccCCccHH-HHHHHHHHHHHHHCCCeE----EEEEeCcCcccchhhH
Confidence 78999999999876521 1111 011122 22333333333 455677 7899999997665543
No 9
>3ik5_A Protein NEF; protein-protein complex, cell membrane, lipoprotein, membran myristate; 2.05A {Simian immunodeficiency virus} SCOP: d.102.1.0 PDB: 3ioz_A
Probab=54.80 E-value=5.6 Score=32.66 Aligned_cols=20 Identities=30% Similarity=0.282 Sum_probs=16.9
Q ss_pred cCCCCCCCCCCccccccccc
Q psy6081 11 KSTPGRQDSKPYSFASLVSL 30 (226)
Q Consensus 11 ~~~~~~~~~~p~~~~~~~~~ 30 (226)
.-|||---|||++|-.+...
T Consensus 66 nYT~GPG~RyPltFGWcfkL 85 (143)
T 3ik5_A 66 DYTSGPGIRYPKTFGWLWKL 85 (143)
T ss_dssp CBCCCSSSBCBSSTTCCEEE
T ss_pred eeCCCCCccccccCceeEEE
Confidence 35889999999999998764
No 10
>2kfe_A Meucin-24; alpha-helix, antimicrobial protein; NMR {Synthetic}
Probab=53.29 E-value=10 Score=22.85 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=17.4
Q ss_pred CChhHHHHHHHHHHHHHHHhcC
Q psy6081 188 GTPFMACLSACLHYYIHDRLNN 209 (226)
Q Consensus 188 GT~FM~~L~~~L~~yI~~kl~~ 209 (226)
|++||.+|..-|.. +.+||.+
T Consensus 3 gkei~~kiK~kl~~-akdK~k~ 23 (26)
T 2kfe_A 3 GREFMSNLKEKLSG-VKEKMKN 23 (26)
T ss_dssp THHHHHHHHHHHHH-HHHHTTT
T ss_pred hhHHHHHHHHHHHH-HHHHHHc
Confidence 89999999998876 6677765
No 11
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=49.64 E-value=24 Score=32.01 Aligned_cols=60 Identities=13% Similarity=0.194 Sum_probs=32.6
Q ss_pred eEEEecccccccccCCC----CCCC----CCCHHHHHHHHHHHHHHHHh-hhcccceEEEEEeCCCCccccccc
Q psy6081 55 NLYLDMNGIIHPCTHPE----DKPA----PKDEDEMMVAIFECIDRLFR-IVRPRKLLYMAIDGVAPRAKMNQP 119 (226)
Q Consensus 55 nLYLDmNgIIH~c~h~~----~~~~----~~~e~e~~~~If~yID~Lv~-iVrPrKllylAiDGVAPrAKmnQQ 119 (226)
-|-||.++.||-+.+.- ..+. -.....+ ..+|..+-+++. -++| ++++||.+|..|-..-
T Consensus 37 ~l~IDg~~~l~r~~~~~~~~~g~~l~~~~G~~T~al-~gf~~r~~~ll~~~i~P----v~VFDg~~p~~K~~~~ 105 (363)
T 3ory_A 37 IIVIDGYNALYQFLAAIRQPDGTPLMDNNGRITSHL-SGLFYRTINIVEAGIKP----VYVFDGKPPELKAREI 105 (363)
T ss_dssp EEEEEHHHHHHHHHHHCBCTTSCBCBCTTSCBCHHH-HHHHHHHHHHHHTTCEE----EEEECSSCGGGCHHHH
T ss_pred EEEEehHHHHHHHHHhhhccCCCccCCCCCCCccHH-HHHHHHHHHHHHcCCCc----EEEEcCCCccchHHHH
Confidence 46789999999854321 1111 0111222 233333333333 4777 4779999987665443
No 12
>3h7i_A Ribonuclease H, RNAse H; BPT4 RNAse H, 5'-3' exonuclease, hydrolase, endonuclease; 1.50A {Enterobacteria phage T4} PDB: 2ihn_A 3h8w_A 3h8j_A 1tfr_A 3h8s_A
Probab=39.93 E-value=23 Score=32.04 Aligned_cols=56 Identities=13% Similarity=0.067 Sum_probs=40.8
Q ss_pred CeEEEecccccccccCCCCCC-CCCCHHHHHHHHHHHHHHHHhh---hcccceEEEEEeCC
Q psy6081 54 DNLYLDMNGIIHPCTHPEDKP-APKDEDEMMVAIFECIDRLFRI---VRPRKLLYMAIDGV 110 (226)
Q Consensus 54 DnLYLDmNgIIH~c~h~~~~~-~~~~e~e~~~~If~yID~Lv~i---VrPrKllylAiDGV 110 (226)
.-|.||+|+|++-.+-+.-.+ .-.....++.-++..|-+|+.. .+|..+ .+|+|+-
T Consensus 14 ~llLIDgssl~~ra~~~~f~~~~g~~tnav~ggf~~~L~~ll~~~k~~~P~~i-avaFD~~ 73 (305)
T 3h7i_A 14 GICLIDFSQIALSTALVNFPDKEKINLSMVRHLILNSIKFNVKKAKTLGYTKI-VLCIDNA 73 (305)
T ss_dssp CEEEEEHHHHHHHHHHHHSCSSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCEE-EEECCCC
T ss_pred CEEEEeccHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhhhccCCCEE-EEEecCC
Confidence 568999999999854332222 1245666666688999999988 899885 6999964
No 13
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=37.63 E-value=13 Score=33.32 Aligned_cols=58 Identities=17% Similarity=0.281 Sum_probs=30.8
Q ss_pred eEEEecccccccccCCCC---CCC----CCCHHHHHHHHHHHHHHHHh-hhcccceEEEEEeCCCCccccc
Q psy6081 55 NLYLDMNGIIHPCTHPED---KPA----PKDEDEMMVAIFECIDRLFR-IVRPRKLLYMAIDGVAPRAKMN 117 (226)
Q Consensus 55 nLYLDmNgIIH~c~h~~~---~~~----~~~e~e~~~~If~yID~Lv~-iVrPrKllylAiDGVAPrAKmn 117 (226)
-+-||.++.||-+.|.-. .+. -.... -+..+|..+-+|+. -++| +| ++||.+|..|-.
T Consensus 29 ~l~IDgs~~lyr~~~a~~~~~~~l~~~~G~~T~-al~g~~~~~~~ll~~~i~P---~~-VFDg~~~~~r~~ 94 (341)
T 3q8k_A 29 KVAIDASMSIYQFLIAVRQGGDVLQNEEGETTS-HLMGMFYRTIRMMENGIKP---VY-VFDGKPPQLKSG 94 (341)
T ss_dssp EEEEEHHHHHHHHHHHCEETTEECBCTTSCBCH-HHHHHHHHHHHHHTTTCEE---EE-EECCCCCGGGHH
T ss_pred EEEEecHHHHHHHHHccccccCCCCCCCCCCch-HHHHHHHHHHHHHHCCCCc---eE-EEeCCCcccchh
Confidence 467899999988766321 000 01111 22233333333444 3455 44 799999876643
No 14
>3rea_A Protein NEF; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 2.00A {Hiv-1 M} SCOP: d.102.1.1 PDB: 3rbb_A 3reb_A 1efn_B 1avv_A 1avz_A 2nef_A
Probab=36.96 E-value=13 Score=31.23 Aligned_cols=19 Identities=32% Similarity=0.401 Sum_probs=16.5
Q ss_pred CCCCCCCCCCccccccccc
Q psy6081 12 STPGRQDSKPYSFASLVSL 30 (226)
Q Consensus 12 ~~~~~~~~~p~~~~~~~~~ 30 (226)
-|||---|||++|-.+...
T Consensus 87 YTpGPG~RyPltFGWcfKL 105 (166)
T 3rea_A 87 YTPGPGIRYPLTFGWCFKL 105 (166)
T ss_dssp BCCSSSCBCBSSTTCCEEE
T ss_pred cCCCCCcccccccceeeEe
Confidence 5889999999999998764
No 15
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=32.61 E-value=22 Score=32.16 Aligned_cols=59 Identities=19% Similarity=0.310 Sum_probs=32.1
Q ss_pred eEEEecccccccccCCCCCC-CCC-CH-H---HHHHHHHHHHHHHHhh-hcccceEEEEEeCCCCccccc
Q psy6081 55 NLYLDMNGIIHPCTHPEDKP-APK-DE-D---EMMVAIFECIDRLFRI-VRPRKLLYMAIDGVAPRAKMN 117 (226)
Q Consensus 55 nLYLDmNgIIH~c~h~~~~~-~~~-~e-~---e~~~~If~yID~Lv~i-VrPrKllylAiDGVAPrAKmn 117 (226)
-|-||.+++||-+.|.-... .+. +. . .-+..+|..+-+|+.. ++| +| ++||..|..|-.
T Consensus 29 ~l~IDg~~~lyr~~~a~~~~~~~l~~~~G~~t~~l~g~~~~~~~ll~~~i~P---~~-VFDG~~~~~K~~ 94 (379)
T 1ul1_X 29 KVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMENGIKP---VY-VFDGKPPQLKSG 94 (379)
T ss_dssp CEEEEHHHHHHHHHSCC-------------CCHHHHHHHHHHHHHHHTTCCE---EE-EECCSCCSCCCC
T ss_pred EEEEEchHHHHHHHHhCCCcccccCcCCCCCchHHHHHHHHHHHHHHCCCCe---EE-EEeCCCcccccc
Confidence 57899999999987742100 001 10 0 1123344444445554 555 44 899998865543
No 16
>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}
Probab=28.55 E-value=69 Score=27.26 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=29.0
Q ss_pred CccCeEEEecccccccc---cCCCCCCCCCCHHHHHHHHHHHHHHH
Q psy6081 51 MEFDNLYLDMNGIIHPC---THPEDKPAPKDEDEMMVAIFECIDRL 93 (226)
Q Consensus 51 ~~~DnLYLDmNgIIH~c---~h~~~~~~~~~e~e~~~~If~yID~L 93 (226)
+..||||+|-||..+-. ....-.|-..++++++...-..|=.+
T Consensus 105 L~P~NL~f~~~~~p~i~~RGik~~l~P~~~~ee~fL~qyKAliial 150 (215)
T 4ann_A 105 LAPDELFFTRDGLPIAKTRGLQNVVDPLPVSEAEFLTRYKALVICA 150 (215)
T ss_dssp CSGGGEEECTTSCEEESCCEETTTBSCCCCCHHHHHHHHHHHHHHH
T ss_pred EecceEEEcCCCCEEEEEccCccCCCCCCCCHHHHHHHHHHHHHHH
Confidence 57899999999975433 33334455678998887666554433
No 17
>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}
Probab=24.72 E-value=81 Score=26.84 Aligned_cols=42 Identities=10% Similarity=0.004 Sum_probs=28.9
Q ss_pred CccCeEEEecccccccccC---CCCCCCCCCHHHHHHHHHHHHHH
Q psy6081 51 MEFDNLYLDMNGIIHPCTH---PEDKPAPKDEDEMMVAIFECIDR 92 (226)
Q Consensus 51 ~~~DnLYLDmNgIIH~c~h---~~~~~~~~~e~e~~~~If~yID~ 92 (226)
+..||||+|-||..+-... ....|-..++++++...-..|=.
T Consensus 110 l~P~NL~f~~~~~p~i~hRGi~~~lpP~e~~ee~fl~qyKali~a 154 (219)
T 4ano_A 110 VCPENLMFNRALEPFFLHVGVKESLPPDEWDDERLLREVKATVLA 154 (219)
T ss_dssp CCGGGEEECTTCCEEESCCEETTTBSSCSCCHHHHHHHHHHHHHH
T ss_pred EeCceEEEeCCCcEEEEEcCCcccCCCCCCCHHHHHHHHHHHHHH
Confidence 5789999999997664433 23345668899888766555433
No 18
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=21.79 E-value=25 Score=24.07 Aligned_cols=12 Identities=33% Similarity=0.711 Sum_probs=9.7
Q ss_pred CCccCCCChhHH
Q psy6081 182 SNCITPGTPFMA 193 (226)
Q Consensus 182 sN~ITPGT~FM~ 193 (226)
.+.|.|||.|-+
T Consensus 21 ~~gi~pGt~fe~ 32 (54)
T 4rxn_A 21 DDGVNPGTDFKD 32 (54)
T ss_dssp GGTBCTTCCGGG
T ss_pred ccCcCCCCChhH
Confidence 468999999953
Done!