Query psy6081
Match_columns 226
No_of_seqs 147 out of 418
Neff 4.1
Searched_HMMs 13730
Date Fri Aug 16 17:10:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6081.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6081hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ul1x2 c.120.1.2 (X:2-217) Fl 76.5 1.3 9.3E-05 34.5 4.4 62 55-119 29-96 (216)
2 d1rxwa2 c.120.1.2 (A:3-219) Fl 73.5 1.1 8.1E-05 35.4 3.3 62 55-119 21-89 (217)
3 d1b43a2 c.120.1.2 (A:1-219) Fl 68.2 2.1 0.00015 33.8 3.8 62 55-119 22-90 (219)
4 d1tfra2 c.120.1.2 (A:12-180) T 53.9 2.9 0.00021 32.1 2.2 56 56-112 5-64 (169)
5 d1a77a2 c.120.1.2 (A:2-208) Fl 47.6 4.1 0.0003 31.7 2.1 62 55-119 22-90 (207)
6 d1cmwa2 c.120.1.2 (A:10-173) 5 31.2 22 0.0016 26.2 4.0 56 56-113 6-63 (164)
7 d1s24a_ g.41.5.1 (A:) Two-iron 29.1 7.1 0.00052 25.5 0.6 12 182-193 22-33 (56)
8 d1xo1a2 c.120.1.2 (A:19-185) T 28.8 12 0.00087 28.1 2.0 48 56-110 5-52 (167)
9 d2dsxa1 g.41.5.1 (A:1-52) Rubr 28.3 6.7 0.00049 25.3 0.4 12 182-193 21-32 (52)
10 d1iroa_ g.41.5.1 (A:) Rubredox 27.8 7.8 0.00056 25.0 0.6 12 182-193 21-32 (53)
11 d1brfa_ g.41.5.1 (A:) Rubredox 24.5 8.7 0.00064 24.8 0.4 12 182-193 20-31 (53)
12 d1o7ja_ c.88.1.1 (A:) Asparagi 20.2 31 0.0023 28.3 3.2 40 178-226 82-121 (325)
No 1
>d1ul1x2 c.120.1.2 (X:2-217) Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo sapiens) [TaxId: 9606]}
Probab=76.50 E-value=1.3 Score=34.54 Aligned_cols=62 Identities=13% Similarity=0.125 Sum_probs=33.1
Q ss_pred eEEEecccccccccCC---CCCCCC---CCHHHHHHHHHHHHHHHHhhhcccceEEEEEeCCCCccccccc
Q psy6081 55 NLYLDMNGIIHPCTHP---EDKPAP---KDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQP 119 (226)
Q Consensus 55 nLYLDmNgIIH~c~h~---~~~~~~---~~e~e~~~~If~yID~Lv~iVrPrKllylAiDGVAPrAKmnQQ 119 (226)
-|=||.+..+|.+... ...+.. .....-+..+|..+..|.. =.=..++.+||-+|-.|..+.
T Consensus 29 ~vaIDas~~l~~~l~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~---~~I~pifVFDG~~~~~K~~~~ 96 (216)
T d1ul1x2 29 KVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMME---NGIKPVYVFDGKPPQLKSGEL 96 (216)
T ss_dssp CEEEEHHHHHHHHHSCC-------------CCHHHHHHHHHHHHHHH---TTCCEEEEECCSCCSCCCCCC
T ss_pred EEEEEeHHHHHHHHHHhccccchhhccCCCCcHHHHHHHHHHHHHHH---cCCeEEEEEcCCCCccccchh
Confidence 5678999999874322 111000 0111223344444444432 122357889999998888776
No 2
>d1rxwa2 c.120.1.2 (A:3-219) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=73.49 E-value=1.1 Score=35.37 Aligned_cols=62 Identities=13% Similarity=0.187 Sum_probs=37.6
Q ss_pred eEEEeccccccc----ccCCCCCCC---CCCHHHHHHHHHHHHHHHHhhhcccceEEEEEeCCCCccccccc
Q psy6081 55 NLYLDMNGIIHP----CTHPEDKPA---PKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQP 119 (226)
Q Consensus 55 nLYLDmNgIIH~----c~h~~~~~~---~~~e~e~~~~If~yID~Lv~iVrPrKllylAiDGVAPrAKmnQQ 119 (226)
-+=||....+|. |.++.+.+. .......+..++..|..|.+ =.=..++.+||.+|..|....
T Consensus 21 ~vAIDas~wL~k~l~~~~~~~~~~l~~~~~~~~~~l~~~~~ri~~l~~---~~I~pifVFDG~~p~~K~~~~ 89 (217)
T d1rxwa2 21 KIAVDAFNTLYQFISIIRQPDGTPLKDSQGRITSHLSGILYRVSNMVE---VGIRPVFVFDGEPPEFKKAEI 89 (217)
T ss_dssp EEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCHHHHHHHHHHHHHHH---HTCEEEEEECCSCCGGGHHHH
T ss_pred EEEEECHHHHHHHHHHhccccCCchhhccCCccHHHHHHHHHHHHHHH---cCCeEEEEECCCCCcchhhHH
Confidence 356888889986 333322211 11122455566666666643 122357889999999998877
No 3
>d1b43a2 c.120.1.2 (A:1-219) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=68.17 E-value=2.1 Score=33.84 Aligned_cols=62 Identities=15% Similarity=0.156 Sum_probs=35.5
Q ss_pred eEEEecccccccc----cCCCCCCC---CCCHHHHHHHHHHHHHHHHhhhcccceEEEEEeCCCCccccccc
Q psy6081 55 NLYLDMNGIIHPC----THPEDKPA---PKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQP 119 (226)
Q Consensus 55 nLYLDmNgIIH~c----~h~~~~~~---~~~e~e~~~~If~yID~Lv~iVrPrKllylAiDGVAPrAKmnQQ 119 (226)
-+=||....+|.+ ......+. .......+..+|..+..|.+ =.=..++-+||.+|-+|....
T Consensus 22 ~iaIDas~~L~k~l~~~~~~~~~~l~~~~~~~~~~l~~~~~r~~~Ll~---~~I~pVFVFDG~~~~~K~~~~ 90 (219)
T d1b43a2 22 KIAIDALNAIYQFLSTIRQKDGTPLMDSKGRITSHLSGLFYRTINLME---AGIKPVYVFDGEPPEFKKKEL 90 (219)
T ss_dssp EEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCHHHHHHHHHHHHHHH---TTCEEEEEECCSCCCCSSCSS
T ss_pred EEEEEChHHHHHHHHHhcccccchhhhccCCCchHHHHHHHHHHHHHH---cCCeEEEEeCCCCCHHHhhhH
Confidence 3468888888863 22221111 11122344455555554442 223356799999999999887
No 4
>d1tfra2 c.120.1.2 (A:12-180) T4 RNase H {Bacteriophage T4 [TaxId: 10665]}
Probab=53.93 E-value=2.9 Score=32.12 Aligned_cols=56 Identities=13% Similarity=0.094 Sum_probs=35.5
Q ss_pred EEEecccccccccCCCCCC-CCCCHHHHHHHHHHHHHHHHhhhc---ccceEEEEEeCCCC
Q psy6081 56 LYLDMNGIIHPCTHPEDKP-APKDEDEMMVAIFECIDRLFRIVR---PRKLLYMAIDGVAP 112 (226)
Q Consensus 56 LYLDmNgIIH~c~h~~~~~-~~~~e~e~~~~If~yID~Lv~iVr---PrKllylAiDGVAP 112 (226)
|.||.|.|.+-..+.+... ...+..-+..-+++.|..++..++ |.++ ++|.||..+
T Consensus 5 ~liD~s~~~~~~~~~~~~~~~~~~~~~~~h~~lnsi~~~~k~~~~~~p~~v-iv~~D~~~~ 64 (169)
T d1tfra2 5 CLIDFSQIALSTALVNFPDKEKINLSMVRHLILNSIKFNVKKAKTLGYTKI-VLCIDNAKS 64 (169)
T ss_dssp EEEEHHHHHHHHHHHHSCTTSCCCHHHHHHHHHHHHHHHHHHHHHTTEEEE-EEECCCCTT
T ss_pred EEEechHHHHHHHHHhccCCCCCChhHHHHHHHHHHHHHHHHhhhcCCCeE-EEEEeCCCC
Confidence 6789999988876544221 233444333336677776665554 8775 689999865
No 5
>d1a77a2 c.120.1.2 (A:2-208) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=47.57 E-value=4.1 Score=31.71 Aligned_cols=62 Identities=13% Similarity=0.119 Sum_probs=36.2
Q ss_pred eEEEecccccccccC----CCCCCC---CCCHHHHHHHHHHHHHHHHhhhcccceEEEEEeCCCCccccccc
Q psy6081 55 NLYLDMNGIIHPCTH----PEDKPA---PKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQP 119 (226)
Q Consensus 55 nLYLDmNgIIH~c~h----~~~~~~---~~~e~e~~~~If~yID~Lv~iVrPrKllylAiDGVAPrAKmnQQ 119 (226)
-+=||....+|...+ +...+. .......+..+|..+.+|... .=..++-+||.+|..|..+.
T Consensus 22 ~vaIDas~~L~~~l~~~~~~~~~~l~~~~g~~~~~l~~~~~~~~~ll~~---~I~pifVFDG~~~~~K~~~~ 90 (207)
T d1a77a2 22 KVAIDGMNALYQFLTSIRLRDGSPLRNRKGEITSAYNGVFYKTIHLLEN---DITPIWVFDGEPPKLKEKTR 90 (207)
T ss_dssp EEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCHHHHHHHHHHHHHHHT---TCEEEEEECCCTTCCCCSSC
T ss_pred EEEEEChHHHHHHHHHhhcccCchhhhccCCcCHHHHHHHHHHHHHHHc---CCeEEEEECCCCchhhhhhH
Confidence 467898888886422 211110 111223455666666665431 22345689999999998877
No 6
>d1cmwa2 c.120.1.2 (A:10-173) 5' to 3' exonuclease domain of DNA polymerase Taq {Thermus aquaticus [TaxId: 271]}
Probab=31.18 E-value=22 Score=26.17 Aligned_cols=56 Identities=11% Similarity=0.126 Sum_probs=30.9
Q ss_pred EEEecccccccccCCCCCC--CCCCHHHHHHHHHHHHHHHHhhhcccceEEEEEeCCCCc
Q psy6081 56 LYLDMNGIIHPCTHPEDKP--APKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPR 113 (226)
Q Consensus 56 LYLDmNgIIH~c~h~~~~~--~~~~e~e~~~~If~yID~Lv~iVrPrKllylAiDGVAPr 113 (226)
|.||.|.++|-|.|..... .....-..+..+...|..+++. .|.. ++++.|+..+.
T Consensus 6 lLIDg~~l~~R~~~a~~~~~~~~g~~~~~i~gf~~~l~~~~~~-~~~~-~~v~~d~~~~~ 63 (164)
T d1cmwa2 6 LLVDGHHLAYRTFHALKGLTTSRGEPVQAVYGFAKSLLKALKE-DGDA-VIVVFDAKAPS 63 (164)
T ss_dssp EEEETTHHHHHHHTSSTTCBCTTSCBCHHHHHHHHHHHHHHHH-CCSE-EEEECCCSSSC
T ss_pred EEEeChHHHHHHHHcCCcccCCCCCeeHHHHHHHHHHHHHHhc-CCce-EEEEEeccccc
Confidence 6799999999988853211 0011112333444555555544 4544 45777765553
No 7
>d1s24a_ g.41.5.1 (A:) Two-iron rubredoxin {Pseudomonas oleovorans [TaxId: 301]}
Probab=29.13 E-value=7.1 Score=25.53 Aligned_cols=12 Identities=42% Similarity=0.667 Sum_probs=10.0
Q ss_pred CCccCCCChhHH
Q psy6081 182 SNCITPGTPFMA 193 (226)
Q Consensus 182 sN~ITPGT~FM~ 193 (226)
.+.|.|||.|.+
T Consensus 22 ~~gi~pGT~F~~ 33 (56)
T d1s24a_ 22 AEGFTPGTRFED 33 (56)
T ss_dssp TTTCCSCCCGGG
T ss_pred ccCcCCCCChhh
Confidence 467999999974
No 8
>d1xo1a2 c.120.1.2 (A:19-185) T5 5'-exonuclease {Bacteriophage T5 [TaxId: 10726]}
Probab=28.84 E-value=12 Score=28.05 Aligned_cols=48 Identities=17% Similarity=0.167 Sum_probs=29.8
Q ss_pred EEEecccccccccCCCCCCCCCCHHHHHHHHHHHHHHHHhhhcccceEEEEEeCC
Q psy6081 56 LYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGV 110 (226)
Q Consensus 56 LYLDmNgIIH~c~h~~~~~~~~~e~e~~~~If~yID~Lv~iVrPrKllylAiDGV 110 (226)
|-||.|+++|-+.|.... .+ +...++..|..|+...+|.+++ ++.|+.
T Consensus 5 lliDg~~l~~R~~~~~~~---~~---~~~~f~~~l~~l~~~~~~~~ii-v~~d~~ 52 (167)
T d1xo1a2 5 MIVDGTNLGFRFKHNNSK---KP---FASSYVSTIQSLAKSYSARTTI-VLGDKG 52 (167)
T ss_dssp EEEEHHHHHTTC----------C---CHHHHHHHHHHHHHHTTEEEEE-EECCBS
T ss_pred EEEcChHHHHHHHHcCCC---cC---HHHHHHHHHHHHHHHcCCCEEE-EEEeCC
Confidence 678999999999886421 21 2234556777888888998875 556643
No 9
>d2dsxa1 g.41.5.1 (A:1-52) Rubredoxin {Desulfovibrio gigas [TaxId: 879]}
Probab=28.34 E-value=6.7 Score=25.26 Aligned_cols=12 Identities=42% Similarity=0.675 Sum_probs=9.8
Q ss_pred CCccCCCChhHH
Q psy6081 182 SNCITPGTPFMA 193 (226)
Q Consensus 182 sN~ITPGT~FM~ 193 (226)
.+.|.|||.|.+
T Consensus 21 ~~gi~pGT~F~~ 32 (52)
T d2dsxa1 21 DSGIKPGTKFED 32 (52)
T ss_dssp GGTBCTTCCGGG
T ss_pred ccCCCCCCCHHH
Confidence 367999999975
No 10
>d1iroa_ g.41.5.1 (A:) Rubredoxin {Clostridium pasteurianum [TaxId: 1501]}
Probab=27.84 E-value=7.8 Score=25.02 Aligned_cols=12 Identities=42% Similarity=0.756 Sum_probs=9.9
Q ss_pred CCccCCCChhHH
Q psy6081 182 SNCITPGTPFMA 193 (226)
Q Consensus 182 sN~ITPGT~FM~ 193 (226)
.+.|.|||+|.+
T Consensus 21 ~~gi~pGT~F~~ 32 (53)
T d1iroa_ 21 DNGVNPGTDFKD 32 (53)
T ss_dssp GGTBCTTCCGGG
T ss_pred ccCCCCCCCHHH
Confidence 367999999964
No 11
>d1brfa_ g.41.5.1 (A:) Rubredoxin {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=24.49 E-value=8.7 Score=24.78 Aligned_cols=12 Identities=50% Similarity=0.803 Sum_probs=9.9
Q ss_pred CCccCCCChhHH
Q psy6081 182 SNCITPGTPFMA 193 (226)
Q Consensus 182 sN~ITPGT~FM~ 193 (226)
.+.|.|||.|.+
T Consensus 20 ~~gi~pGT~f~d 31 (53)
T d1brfa_ 20 DNGISPGTKFEE 31 (53)
T ss_dssp GGTBCTTCCGGG
T ss_pred ccCCCCCCCHHH
Confidence 467999999974
No 12
>d1o7ja_ c.88.1.1 (A:) Asparaginase type II {Erwinia chrysanthemi [TaxId: 556]}
Probab=20.17 E-value=31 Score=28.33 Aligned_cols=40 Identities=25% Similarity=0.280 Sum_probs=30.4
Q ss_pred CCCCCCccCCCChhHHHHHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCC
Q psy6081 178 SHFDSNCITPGTPFMACLSACLHYYIHDRLNNDPGWKGIKVILSDANVP 226 (226)
Q Consensus 178 ~~fDsN~ITPGT~FM~~L~~~L~~yI~~kl~~dp~W~~i~VI~Sds~VP 226 (226)
..+|.-.||.||-=|+.-..+|...+ .+ ..-|||.||..|
T Consensus 82 ~~~dgiVv~HGTDTm~~ta~~Ls~~l----~~-----~kPVV~TGs~~p 121 (325)
T d1o7ja_ 82 DDVDGVVITHGTDTVEESAYFLHLTV----KS-----DKPVVFVAAMRP 121 (325)
T ss_dssp TTCCEEEEECCSTTHHHHHHHHHHHC----CC-----CSCEEEECCSSC
T ss_pred cCcceEEEecCcCcHHHHHHHHHHHh----cC-----CCCeEEeccccc
Confidence 34788899999999999998886432 22 235999998876
Done!