Your job contains 1 sequence.
>psy6081
MESTQEGSSVKSTPGRQDSKPYSFASLVSLPQEVNGQKIPFDSSKPNPNGMEFDNLYLDM
NGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQPL
TVYSVLYDRGNYSTWQLMRSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHF
DSNCITPGTPFMACLSACLHYYIHDRLNNDPGWKGIKVILSDANVP
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy6081
(226 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0031868 - symbol:Rat1 species:7227 "Drosophila mel... 391 1.1e-72 2
UNIPROTKB|F1PB11 - symbol:XRN2 "Uncharacterized protein" ... 416 9.9e-66 2
UNIPROTKB|E2RMS9 - symbol:XRN2 "Uncharacterized protein" ... 416 1.0e-65 2
UNIPROTKB|F1SAU5 - symbol:XRN2 "Uncharacterized protein" ... 416 1.0e-65 2
MGI|MGI:894687 - symbol:Xrn2 "5'-3' exoribonuclease 2" sp... 416 1.0e-65 2
RGD|1310218 - symbol:Xrn2 "5'-3' exoribonuclease 2" speci... 416 1.0e-65 2
UNIPROTKB|Q9H0D6 - symbol:XRN2 "5'-3' exoribonuclease 2" ... 415 1.3e-65 2
UNIPROTKB|Q5R4L5 - symbol:XRN2 "5'-3' exoribonuclease 2" ... 415 1.3e-65 2
UNIPROTKB|F1MKX7 - symbol:XRN2 "Uncharacterized protein" ... 416 2.7e-65 2
UNIPROTKB|Q5ZIP4 - symbol:XRN2 "5'-3' exoribonuclease 2" ... 393 1.3e-62 2
ZFIN|ZDB-GENE-040426-2874 - symbol:xrn2 "5'-3' exoribonuc... 405 5.3e-62 2
UNIPROTKB|Q60SG7 - symbol:xrn-2 "5'-3' exoribonuclease 2 ... 370 1.5e-61 2
WB|WBGene00006964 - symbol:xrn-2 species:6239 "Caenorhabd... 363 2.5e-61 2
UNIPROTKB|Q9U299 - symbol:xrn-2 "5'-3' exoribonuclease 2 ... 363 2.5e-61 2
TAIR|locus:2005614 - symbol:XRN3 "5'-3' exoribonuclease 3... 348 2.9e-54 2
TAIR|locus:2020073 - symbol:XRN4 "exoribonuclease 4" spec... 329 1.5e-52 2
UNIPROTKB|B4DZC3 - symbol:XRN2 "5'-3' exoribonuclease 2" ... 292 1.9e-52 2
POMBASE|SPAC26A3.12c - symbol:dhp1 "5'-3' exoribonuclease... 334 1.1e-48 2
SGD|S000005574 - symbol:RAT1 "Nuclear 5' to 3' single-str... 314 1.5e-42 2
CGD|CAL0003816 - symbol:RAT1 species:5476 "Candida albica... 272 1.6e-38 2
UNIPROTKB|Q5AMG5 - symbol:RAT1 "5'-3' exoribonuclease 2" ... 272 1.6e-38 2
DICTYBASE|DDB_G0269922 - symbol:xrn2 "CCHC-type zinc fing... 421 3.3e-38 1
ZFIN|ZDB-GENE-040426-1203 - symbol:xrn1 "5'-3' exoribonuc... 221 9.2e-33 2
UNIPROTKB|E1C8R7 - symbol:XRN1 "Uncharacterized protein" ... 223 1.7e-31 2
ASPGD|ASPL0000014026 - symbol:AN11052 species:162425 "Eme... 225 2.1e-31 2
POMBASE|SPAC17A5.14 - symbol:exo2 "exonuclease II Exo2" s... 233 2.3e-31 2
UNIPROTKB|E1BMZ8 - symbol:E1BMZ8 "Uncharacterized protein... 220 4.0e-30 2
UNIPROTKB|F6XNM6 - symbol:XRN1 "Uncharacterized protein" ... 220 4.9e-30 2
UNIPROTKB|E2R2X2 - symbol:XRN1 "Uncharacterized protein" ... 220 5.1e-30 2
UNIPROTKB|J9PAD8 - symbol:XRN1 "Uncharacterized protein" ... 220 5.1e-30 2
SGD|S000003141 - symbol:XRN1 "Evolutionarily-conserved 5'... 212 7.9e-30 2
UNIPROTKB|Q8IZH2 - symbol:XRN1 "5'-3' exoribonuclease 1" ... 220 8.0e-30 2
MGI|MGI:891964 - symbol:Xrn1 "5'-3' exoribonuclease 1" sp... 220 8.1e-30 2
RGD|1309713 - symbol:Xrn1 "5'-3' exoribonuclease 1" speci... 220 8.2e-30 2
UNIPROTKB|F1SKG4 - symbol:XRN1 "Uncharacterized protein" ... 220 8.2e-30 2
WB|WBGene00012730 - symbol:xrn-1 species:6239 "Caenorhabd... 223 4.0e-28 2
FB|FBgn0020261 - symbol:pcm "pacman" species:7227 "Drosop... 212 1.6e-26 2
DICTYBASE|DDB_G0276137 - symbol:xrn1 "5'-3' exoribonuclea... 196 1.0e-21 2
UNIPROTKB|F8WDA0 - symbol:XRN1 "5'-3' exoribonuclease 1" ... 220 3.6e-18 1
GENEDB_PFALCIPARUM|PF11_0074 - symbol:PF11_0074 "exonucle... 179 1.7e-15 2
UNIPROTKB|Q8IIU0 - symbol:PF11_0074 "Exonuclease, putativ... 179 1.7e-15 2
DICTYBASE|DDB_G0289921 - symbol:DDB_G0289921 species:4468... 90 5.2e-08 3
>FB|FBgn0031868 [details] [associations]
symbol:Rat1 species:7227 "Drosophila melanogaster"
[GO:0004534 "5'-3' exoribonuclease activity" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000738 "DNA
catabolic process, exonucleolytic" evidence=ISS] [GO:0008409 "5'-3'
exonuclease activity" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR004859 InterPro:IPR017151 Pfam:PF03159
PIRSF:PIRSF037239 PROSITE:PS50158 GO:GO:0005634 EMBL:AE014134
GO:GO:0022008 GO:GO:0006355 GO:GO:0046872 GO:GO:0006397
GO:GO:0003676 GO:GO:0008409 GO:GO:0000738 GO:GO:0006353
eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
GeneTree:ENSGT00670000098098 KO:K12619 OMA:RKRMKRD EMBL:BT021334
EMBL:BT056259 RefSeq:NP_609082.1 UniGene:Dm.8576
ProteinModelPortal:Q9VM71 SMR:Q9VM71 MINT:MINT-855535 STRING:Q9VM71
PaxDb:Q9VM71 EnsemblMetazoa:FBtr0079345 EnsemblMetazoa:FBtr0332324
GeneID:33964 KEGG:dme:Dmel_CG10354 UCSC:CG10354-RA CTD:33964
FlyBase:FBgn0031868 InParanoid:Q9VM71 OrthoDB:EOG41VHHV
PhylomeDB:Q9VM71 GenomeRNAi:33964 NextBio:786169 Bgee:Q9VM71
GermOnline:CG10354 Uniprot:Q9VM71
Length = 908
Score = 391 (142.7 bits), Expect = 1.1e-72, Sum P(2) = 1.1e-72
Identities = 73/83 (87%), Positives = 77/83 (92%)
Query: 36 GQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLFR 95
G+ I D + PNPNG+EFDNLYLDMNGIIHPCTHPEDKPAPK+EDEMMVAIFECIDRLF
Sbjct: 32 GRNIYEDPTLPNPNGIEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFECIDRLFG 91
Query: 96 IVRPRKLLYMAIDGVAPRAKMNQ 118
IVRPRKLLYMAIDGVAPRAKMNQ
Sbjct: 92 IVRPRKLLYMAIDGVAPRAKMNQ 114
Score = 382 (139.5 bits), Expect = 1.1e-72, Sum P(2) = 1.1e-72
Identities = 70/88 (79%), Positives = 77/88 (87%)
Query: 139 RSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSAC 198
RSRRFRA+KET EK E+ARIRE+LL+ GC LPPEKEKG HFDSNCITPGTPFM LS C
Sbjct: 116 RSRRFRAAKETTEKRLEIARIREELLSRGCKLPPEKEKGEHFDSNCITPGTPFMDRLSKC 175
Query: 199 LHYYIHDRLNNDPGWKGIKVILSDANVP 226
LHY++HDR NN+P WKGIKVILSDANVP
Sbjct: 176 LHYFVHDRQNNNPAWKGIKVILSDANVP 203
>UNIPROTKB|F1PB11 [details] [associations]
symbol:XRN2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016235 "aggresome" evidence=IEA] [GO:0016070
"RNA metabolic process" evidence=IEA] [GO:0016049 "cell growth"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0000738 "DNA catabolic
process, exonucleolytic" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004534 "5'-3' exoribonuclease activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001878 InterPro:IPR004859 InterPro:IPR017151
Pfam:PF03159 PIRSF:PIRSF037239 SMART:SM00343 GO:GO:0005730
GO:GO:0016049 GO:GO:0008270 GO:GO:0003676 GO:GO:0016070
GO:GO:0000738 InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
GeneTree:ENSGT00670000098098 EMBL:AAEX03013750
Ensembl:ENSCAFT00000008379 Uniprot:F1PB11
Length = 948
Score = 416 (151.5 bits), Expect = 9.9e-66, Sum P(2) = 9.9e-66
Identities = 77/88 (87%), Positives = 82/88 (93%)
Query: 31 PQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECI 90
P+E NG KIP D+SKPNPN +EFDNLYLDMNGIIHPCTHPEDKPAPK+EDEMMVAIFE I
Sbjct: 24 PKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFEYI 83
Query: 91 DRLFRIVRPRKLLYMAIDGVAPRAKMNQ 118
DRLF IVRPR+LLYMAIDGVAPRAKMNQ
Sbjct: 84 DRLFNIVRPRRLLYMAIDGVAPRAKMNQ 111
Score = 291 (107.5 bits), Expect = 9.9e-66, Sum P(2) = 9.9e-66
Identities = 58/88 (65%), Positives = 65/88 (73%)
Query: 139 RSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSAC 198
RSRRFRASKE E E R+RE++LA G LPPE+ K FDSNCITPGT FM L+ C
Sbjct: 113 RSRRFRASKEGMEAAVEKQRVREEILAKGGFLPPEEIK-ERFDSNCITPGTEFMDNLAKC 171
Query: 199 LHYYIHDRLNNDPGWKGIKVILSDANVP 226
L YYI DRLNNDPGWK + VILSDA+ P
Sbjct: 172 LRYYIADRLNNDPGWKNLTVILSDASAP 199
>UNIPROTKB|E2RMS9 [details] [associations]
symbol:XRN2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004534 "5'-3'
exoribonuclease activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001878 InterPro:IPR004859
InterPro:IPR017151 Pfam:PF03159 PIRSF:PIRSF037239 SMART:SM00343
GO:GO:0005634 GO:GO:0008270 GO:GO:0003676 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 GeneTree:ENSGT00670000098098
KO:K12619 CTD:22803 OMA:RKRMKRD EMBL:AAEX03013750
RefSeq:XP_534324.2 Ensembl:ENSCAFT00000008370 GeneID:477133
KEGG:cfa:477133 NextBio:20852667 Uniprot:E2RMS9
Length = 950
Score = 416 (151.5 bits), Expect = 1.0e-65, Sum P(2) = 1.0e-65
Identities = 77/88 (87%), Positives = 82/88 (93%)
Query: 31 PQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECI 90
P+E NG KIP D+SKPNPN +EFDNLYLDMNGIIHPCTHPEDKPAPK+EDEMMVAIFE I
Sbjct: 26 PKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFEYI 85
Query: 91 DRLFRIVRPRKLLYMAIDGVAPRAKMNQ 118
DRLF IVRPR+LLYMAIDGVAPRAKMNQ
Sbjct: 86 DRLFNIVRPRRLLYMAIDGVAPRAKMNQ 113
Score = 291 (107.5 bits), Expect = 1.0e-65, Sum P(2) = 1.0e-65
Identities = 58/88 (65%), Positives = 65/88 (73%)
Query: 139 RSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSAC 198
RSRRFRASKE E E R+RE++LA G LPPE+ K FDSNCITPGT FM L+ C
Sbjct: 115 RSRRFRASKEGMEAAVEKQRVREEILAKGGFLPPEEIK-ERFDSNCITPGTEFMDNLAKC 173
Query: 199 LHYYIHDRLNNDPGWKGIKVILSDANVP 226
L YYI DRLNNDPGWK + VILSDA+ P
Sbjct: 174 LRYYIADRLNNDPGWKNLTVILSDASAP 201
>UNIPROTKB|F1SAU5 [details] [associations]
symbol:XRN2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016235 "aggresome" evidence=IEA] [GO:0016070 "RNA
metabolic process" evidence=IEA] [GO:0016049 "cell growth"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0000738 "DNA catabolic
process, exonucleolytic" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004534 "5'-3' exoribonuclease activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001878 InterPro:IPR004859 InterPro:IPR017151
Pfam:PF03159 PIRSF:PIRSF037239 SMART:SM00343 GO:GO:0005730
GO:GO:0016049 GO:GO:0008270 GO:GO:0003676 GO:GO:0016070
GO:GO:0000738 InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
GeneTree:ENSGT00670000098098 KO:K12619 CTD:22803 OMA:RKRMKRD
EMBL:CU633728 EMBL:CU459108 RefSeq:XP_003134355.2 UniGene:Ssc.7627
Ensembl:ENSSSCT00000007781 GeneID:100517201 KEGG:ssc:100517201
Uniprot:F1SAU5
Length = 950
Score = 416 (151.5 bits), Expect = 1.0e-65, Sum P(2) = 1.0e-65
Identities = 77/88 (87%), Positives = 82/88 (93%)
Query: 31 PQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECI 90
P+E NG KIP D+SKPNPN +EFDNLYLDMNGIIHPCTHPEDKPAPK+EDEMMVAIFE I
Sbjct: 26 PKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFEYI 85
Query: 91 DRLFRIVRPRKLLYMAIDGVAPRAKMNQ 118
DRLF IVRPR+LLYMAIDGVAPRAKMNQ
Sbjct: 86 DRLFNIVRPRRLLYMAIDGVAPRAKMNQ 113
Score = 291 (107.5 bits), Expect = 1.0e-65, Sum P(2) = 1.0e-65
Identities = 58/88 (65%), Positives = 65/88 (73%)
Query: 139 RSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSAC 198
RSRRFRASKE E E R+RE++LA G LPPE+ K FDSNCITPGT FM L+ C
Sbjct: 115 RSRRFRASKEGMEAAVEKQRVREEILAKGGFLPPEEIK-ERFDSNCITPGTEFMDNLAKC 173
Query: 199 LHYYIHDRLNNDPGWKGIKVILSDANVP 226
L YYI DRLNNDPGWK + VILSDA+ P
Sbjct: 174 LRYYIADRLNNDPGWKNLTVILSDASAP 201
>MGI|MGI:894687 [details] [associations]
symbol:Xrn2 "5'-3' exoribonuclease 2" species:10090 "Mus
musculus" [GO:0000738 "DNA catabolic process, exonucleolytic"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0004534 "5'-3'
exoribonuclease activity" evidence=NAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=IC] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0006281 "DNA repair" evidence=NAS]
[GO:0006310 "DNA recombination" evidence=NAS] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006353
"DNA-dependent transcription, termination" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0007017 "microtubule-based process" evidence=TAS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008409 "5'-3' exonuclease
activity" evidence=ISO] [GO:0016049 "cell growth" evidence=IGI]
[GO:0016070 "RNA metabolic process" evidence=IGI] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] Reactome:REACT_93132 InterPro:IPR001878
InterPro:IPR004859 InterPro:IPR017151 Pfam:PF03159
PIRSF:PIRSF037239 PROSITE:PS50158 SMART:SM00343 MGI:MGI:894687
GO:GO:0005730 GO:GO:0006355 GO:GO:0046872 GO:GO:0016049
GO:GO:0008270 GO:GO:0006281 GO:GO:0006397 GO:GO:0007283
GO:GO:0003676 GO:GO:0006310 GO:GO:0016070 GO:GO:0007017
GO:GO:0000738 GO:GO:0006353 eggNOG:COG5049 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 HOGENOM:HOG000205514
GeneTree:ENSGT00670000098098 KO:K12619 CTD:22803 HOVERGEN:HBG036677
OMA:RKRMKRD OrthoDB:EOG4M0F0Z ChiTaRS:XRN2 EMBL:D38517
EMBL:AK004800 EMBL:AK031247 EMBL:AK053643 EMBL:AK133654
EMBL:AK167019 EMBL:AK168037 EMBL:BC004028 EMBL:BC054743
IPI:IPI00120046 IPI:IPI00283057 PIR:I49635 RefSeq:NP_036047.2
UniGene:Mm.3065 ProteinModelPortal:Q9DBR1 SMR:Q9DBR1 IntAct:Q9DBR1
STRING:Q9DBR1 PhosphoSite:Q9DBR1 PaxDb:Q9DBR1 PRIDE:Q9DBR1
Ensembl:ENSMUST00000028921 GeneID:24128 KEGG:mmu:24128
UCSC:uc008msq.1 InParanoid:Q9DBR1 NextBio:304163 Bgee:Q9DBR1
CleanEx:MM_XRN2 Genevestigator:Q9DBR1 GermOnline:ENSMUSG00000027433
Uniprot:Q9DBR1
Length = 951
Score = 416 (151.5 bits), Expect = 1.0e-65, Sum P(2) = 1.0e-65
Identities = 77/88 (87%), Positives = 82/88 (93%)
Query: 31 PQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECI 90
P+E NG KIP D+SKPNPN +EFDNLYLDMNGIIHPCTHPEDKPAPK+EDEMMVAIFE I
Sbjct: 26 PKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFEYI 85
Query: 91 DRLFRIVRPRKLLYMAIDGVAPRAKMNQ 118
DRLF IVRPR+LLYMAIDGVAPRAKMNQ
Sbjct: 86 DRLFNIVRPRRLLYMAIDGVAPRAKMNQ 113
Score = 291 (107.5 bits), Expect = 1.0e-65, Sum P(2) = 1.0e-65
Identities = 58/88 (65%), Positives = 65/88 (73%)
Query: 139 RSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSAC 198
RSRRFRASKE E E R+RE++LA G LPPE+ K FDSNCITPGT FM L+ C
Sbjct: 115 RSRRFRASKEGMEAAVEKQRVREEILAKGGFLPPEEIK-ERFDSNCITPGTEFMDNLAKC 173
Query: 199 LHYYIHDRLNNDPGWKGIKVILSDANVP 226
L YYI DRLNNDPGWK + VILSDA+ P
Sbjct: 174 LRYYIADRLNNDPGWKNLTVILSDASAP 201
>RGD|1310218 [details] [associations]
symbol:Xrn2 "5'-3' exoribonuclease 2" species:10116 "Rattus
norvegicus" [GO:0000738 "DNA catabolic process, exonucleolytic"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004534 "5'-3' exoribonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005730 "nucleolus"
evidence=IEA;ISO] [GO:0007283 "spermatogenesis" evidence=IEA;ISO]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008409 "5'-3'
exonuclease activity" evidence=ISO] [GO:0016049 "cell growth"
evidence=IEA;ISO] [GO:0016070 "RNA metabolic process"
evidence=IEA;ISO] [GO:0016235 "aggresome" evidence=IEA;ISO]
InterPro:IPR001878 InterPro:IPR004859 InterPro:IPR017151
Pfam:PF03159 PIRSF:PIRSF037239 SMART:SM00343 RGD:1310218
GO:GO:0005730 GO:GO:0016049 GO:GO:0008270 GO:GO:0003676
GO:GO:0016070 GO:GO:0000738 EMBL:CH474026 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 GeneTree:ENSGT00670000098098
OMA:RKRMKRD OrthoDB:EOG4M0F0Z IPI:IPI00357938 UniGene:Rn.64021
Ensembl:ENSRNOT00000016351 Uniprot:D4A914
Length = 951
Score = 416 (151.5 bits), Expect = 1.0e-65, Sum P(2) = 1.0e-65
Identities = 77/88 (87%), Positives = 82/88 (93%)
Query: 31 PQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECI 90
P+E NG KIP D+SKPNPN +EFDNLYLDMNGIIHPCTHPEDKPAPK+EDEMMVAIFE I
Sbjct: 26 PKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFEYI 85
Query: 91 DRLFRIVRPRKLLYMAIDGVAPRAKMNQ 118
DRLF IVRPR+LLYMAIDGVAPRAKMNQ
Sbjct: 86 DRLFNIVRPRRLLYMAIDGVAPRAKMNQ 113
Score = 291 (107.5 bits), Expect = 1.0e-65, Sum P(2) = 1.0e-65
Identities = 58/88 (65%), Positives = 65/88 (73%)
Query: 139 RSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSAC 198
RSRRFRASKE E E R+RE++LA G LPPE+ K FDSNCITPGT FM L+ C
Sbjct: 115 RSRRFRASKEGMEAAVEKQRVREEILAKGGFLPPEEIK-ERFDSNCITPGTEFMDNLAKC 173
Query: 199 LHYYIHDRLNNDPGWKGIKVILSDANVP 226
L YYI DRLNNDPGWK + VILSDA+ P
Sbjct: 174 LRYYIADRLNNDPGWKNLTVILSDASAP 201
>UNIPROTKB|Q9H0D6 [details] [associations]
symbol:XRN2 "5'-3' exoribonuclease 2" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006353
"DNA-dependent transcription, termination" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0008409 "5'-3'
exonuclease activity" evidence=IDA] [GO:0000738 "DNA catabolic
process, exonucleolytic" evidence=IDA] [GO:0016070 "RNA metabolic
process" evidence=ISS] [GO:0016049 "cell growth" evidence=ISS]
[GO:0004534 "5'-3' exoribonuclease activity" evidence=TAS]
[GO:0007283 "spermatogenesis" evidence=IEP] [GO:0004518 "nuclease
activity" evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006401 "RNA catabolic process" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0016235 "aggresome" evidence=IDA]
Reactome:REACT_17015 InterPro:IPR001878 InterPro:IPR004859
InterPro:IPR017151 Pfam:PF03159 PIRSF:PIRSF037239 PROSITE:PS50158
SMART:SM00343 GO:GO:0005730 GO:GO:0006355 GO:GO:0046872
GO:GO:0016049 GO:GO:0008270 GO:GO:0006397 GO:GO:0007283
GO:GO:0003676 GO:GO:0006401 GO:GO:0006396 GO:GO:0016235
GO:GO:0000738 GO:GO:0006353 EMBL:AL158013 eggNOG:COG5049
InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534 KO:K12619
CTD:22803 HOVERGEN:HBG036677 OMA:RKRMKRD OrthoDB:EOG4M0F0Z
EMBL:AF064257 EMBL:AF152169 EMBL:AY382900 EMBL:AL136841
EMBL:AL117332 EMBL:AK000084 EMBL:BC006417 IPI:IPI00100151
IPI:IPI00788157 RefSeq:NP_036387.2 UniGene:Hs.255932
ProteinModelPortal:Q9H0D6 SMR:Q9H0D6 IntAct:Q9H0D6
MINT:MINT-3065664 STRING:Q9H0D6 PhosphoSite:Q9H0D6 DMDM:30173484
SWISS-2DPAGE:Q9H0D6 PaxDb:Q9H0D6 PeptideAtlas:Q9H0D6 PRIDE:Q9H0D6
DNASU:22803 Ensembl:ENST00000377191 Ensembl:ENST00000430571
GeneID:22803 KEGG:hsa:22803 UCSC:uc002wsf.1 GeneCards:GC20P021283
HGNC:HGNC:12836 HPA:HPA047118 MIM:608851 neXtProt:NX_Q9H0D6
PharmGKB:PA37427 InParanoid:Q9H0D6 PhylomeDB:Q9H0D6 ChiTaRS:XRN2
GenomeRNAi:22803 NextBio:43160 PMAP-CutDB:Q9H0D6
ArrayExpress:Q9H0D6 Bgee:Q9H0D6 CleanEx:HS_XRN2
Genevestigator:Q9H0D6 GermOnline:ENSG00000088930 Uniprot:Q9H0D6
Length = 950
Score = 415 (151.1 bits), Expect = 1.3e-65, Sum P(2) = 1.3e-65
Identities = 77/88 (87%), Positives = 82/88 (93%)
Query: 31 PQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECI 90
P+E NG KIP D+SKPNPN +EFDNLYLDMNGIIHPCTHPEDKPAPK+EDEMMVAIFE I
Sbjct: 26 PKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFEYI 85
Query: 91 DRLFRIVRPRKLLYMAIDGVAPRAKMNQ 118
DRLF IVRPR+LLYMAIDGVAPRAKMNQ
Sbjct: 86 DRLFSIVRPRRLLYMAIDGVAPRAKMNQ 113
Score = 291 (107.5 bits), Expect = 1.3e-65, Sum P(2) = 1.3e-65
Identities = 58/88 (65%), Positives = 65/88 (73%)
Query: 139 RSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSAC 198
RSRRFRASKE E E R+RE++LA G LPPE+ K FDSNCITPGT FM L+ C
Sbjct: 115 RSRRFRASKEGMEAAVEKQRVREEILAKGGFLPPEEIK-ERFDSNCITPGTEFMDNLAKC 173
Query: 199 LHYYIHDRLNNDPGWKGIKVILSDANVP 226
L YYI DRLNNDPGWK + VILSDA+ P
Sbjct: 174 LRYYIADRLNNDPGWKNLTVILSDASAP 201
>UNIPROTKB|Q5R4L5 [details] [associations]
symbol:XRN2 "5'-3' exoribonuclease 2" species:9601 "Pongo
abelii" [GO:0000738 "DNA catabolic process, exonucleolytic"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0008409
"5'-3' exonuclease activity" evidence=ISS] InterPro:IPR001878
InterPro:IPR004859 InterPro:IPR017151 Pfam:PF03159
PIRSF:PIRSF037239 PROSITE:PS50158 SMART:SM00343 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
GO:GO:0003723 GO:GO:0008409 GO:GO:0000738 GO:GO:0006353
InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534 KO:K12619
CTD:22803 HOVERGEN:HBG036677 EMBL:CR861231 RefSeq:NP_001126942.1
UniGene:Pab.18504 PRIDE:Q5R4L5 GeneID:100173960 KEGG:pon:100173960
InParanoid:Q5R4L5 Uniprot:Q5R4L5
Length = 950
Score = 415 (151.1 bits), Expect = 1.3e-65, Sum P(2) = 1.3e-65
Identities = 77/88 (87%), Positives = 82/88 (93%)
Query: 31 PQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECI 90
P+E NG KIP D+SKPNPN +EFDNLYLDMNGIIHPCTHPEDKPAPK+EDEMMVAIFE I
Sbjct: 26 PKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFEYI 85
Query: 91 DRLFRIVRPRKLLYMAIDGVAPRAKMNQ 118
DRLF IVRPR+LLYMAIDGVAPRAKMNQ
Sbjct: 86 DRLFSIVRPRRLLYMAIDGVAPRAKMNQ 113
Score = 291 (107.5 bits), Expect = 1.3e-65, Sum P(2) = 1.3e-65
Identities = 58/88 (65%), Positives = 65/88 (73%)
Query: 139 RSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSAC 198
RSRRFRASKE E E R+RE++LA G LPPE+ K FDSNCITPGT FM L+ C
Sbjct: 115 RSRRFRASKEGMEAAVEKQRVREEILAKGGFLPPEEIK-ERFDSNCITPGTEFMDNLAKC 173
Query: 199 LHYYIHDRLNNDPGWKGIKVILSDANVP 226
L YYI DRLNNDPGWK + VILSDA+ P
Sbjct: 174 LRYYIADRLNNDPGWKNLTVILSDASAP 201
>UNIPROTKB|F1MKX7 [details] [associations]
symbol:XRN2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016235 "aggresome" evidence=IEA] [GO:0016070 "RNA
metabolic process" evidence=IEA] [GO:0016049 "cell growth"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0000738 "DNA catabolic
process, exonucleolytic" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004534 "5'-3' exoribonuclease activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001878 InterPro:IPR004859 InterPro:IPR017151
Pfam:PF03159 PIRSF:PIRSF037239 SMART:SM00343 GO:GO:0005730
GO:GO:0016049 GO:GO:0008270 GO:GO:0003676 GO:GO:0016070
GO:GO:0000738 InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
GeneTree:ENSGT00670000098098 KO:K12619 CTD:22803 OMA:RKRMKRD
EMBL:DAAA02035814 EMBL:DAAA02035815 IPI:IPI00699133
RefSeq:NP_001179401.1 UniGene:Bt.8587 Ensembl:ENSBTAT00000015019
GeneID:517417 KEGG:bta:517417 NextBio:20872434 Uniprot:F1MKX7
Length = 951
Score = 416 (151.5 bits), Expect = 2.7e-65, Sum P(2) = 2.7e-65
Identities = 77/88 (87%), Positives = 82/88 (93%)
Query: 31 PQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECI 90
P+E NG KIP D+SKPNPN +EFDNLYLDMNGIIHPCTHPEDKPAPK+EDEMMVAIFE I
Sbjct: 26 PKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFEYI 85
Query: 91 DRLFRIVRPRKLLYMAIDGVAPRAKMNQ 118
DRLF IVRPR+LLYMAIDGVAPRAKMNQ
Sbjct: 86 DRLFNIVRPRRLLYMAIDGVAPRAKMNQ 113
Score = 287 (106.1 bits), Expect = 2.7e-65, Sum P(2) = 2.7e-65
Identities = 58/88 (65%), Positives = 65/88 (73%)
Query: 139 RSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSAC 198
RSRRFRASKE E E R+RE++LA G LPPE+ K FDSNCITPGT FM L+ C
Sbjct: 115 RSRRFRASKEGMEAEIEKQRVREEILAKGGYLPPEEIK-ERFDSNCITPGTEFMDNLAKC 173
Query: 199 LHYYIHDRLNNDPGWKGIKVILSDANVP 226
L YYI DRLNNDPGWK + VILSDA+ P
Sbjct: 174 LRYYIADRLNNDPGWKNLTVILSDASAP 201
>UNIPROTKB|Q5ZIP4 [details] [associations]
symbol:XRN2 "5'-3' exoribonuclease 2" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004534 "5'-3' exoribonuclease activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006353
"DNA-dependent transcription, termination" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0016049 "cell
growth" evidence=IEA] [GO:0016235 "aggresome" evidence=IEA]
[GO:0000738 "DNA catabolic process, exonucleolytic" evidence=ISS]
[GO:0005730 "nucleolus" evidence=ISS] [GO:0008409 "5'-3'
exonuclease activity" evidence=ISS] InterPro:IPR001878
InterPro:IPR004859 InterPro:IPR017151 Pfam:PF03159
PIRSF:PIRSF037239 PROSITE:PS50158 SMART:SM00343 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0016049 GO:GO:0008270
GO:GO:0006397 GO:GO:0003676 GO:GO:0008409 GO:GO:0000738
GO:GO:0006353 eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341
GO:GO:0004534 HOGENOM:HOG000205514 GeneTree:ENSGT00670000098098
KO:K12619 EMBL:AJ720740 IPI:IPI00598321 RefSeq:NP_001026204.1
UniGene:Gga.8002 STRING:Q5ZIP4 PRIDE:Q5ZIP4
Ensembl:ENSGALT00000013637 GeneID:421236 KEGG:gga:421236 CTD:22803
HOVERGEN:HBG036677 InParanoid:Q5ZIP4 OMA:RKRMKRD OrthoDB:EOG4M0F0Z
NextBio:20824031 Uniprot:Q5ZIP4
Length = 949
Score = 393 (143.4 bits), Expect = 1.3e-62, Sum P(2) = 1.3e-62
Identities = 73/87 (83%), Positives = 79/87 (90%)
Query: 32 QEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECID 91
+E NG K D+SKPNPN +EFDNLYLDMNGIIHPCTHPEDKPAPK+EDEMMVAIFE ID
Sbjct: 27 KECNGVKASVDTSKPNPNEVEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFEYID 86
Query: 92 RLFRIVRPRKLLYMAIDGVAPRAKMNQ 118
R+F IVRPR+LLYMAIDGVAPRAKMNQ
Sbjct: 87 RIFNIVRPRRLLYMAIDGVAPRAKMNQ 113
Score = 285 (105.4 bits), Expect = 1.3e-62, Sum P(2) = 1.3e-62
Identities = 57/88 (64%), Positives = 66/88 (75%)
Query: 139 RSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSAC 198
RSRRFRASKE E E +IR+++LA G ILPPE+ K FDSNCITPGT FM L+ C
Sbjct: 115 RSRRFRASKEGMEAAEEKQKIRQEILAKGGILPPEEVK-ERFDSNCITPGTEFMDNLAKC 173
Query: 199 LHYYIHDRLNNDPGWKGIKVILSDANVP 226
L YYI DRLN+DPGWK + VILSDA+ P
Sbjct: 174 LRYYIADRLNSDPGWKNLTVILSDASAP 201
>ZFIN|ZDB-GENE-040426-2874 [details] [associations]
symbol:xrn2 "5'-3' exoribonuclease 2" species:7955
"Danio rerio" [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004534 "5'-3' exoribonuclease activity"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001878
InterPro:IPR004859 InterPro:IPR017151 Pfam:PF03159
PIRSF:PIRSF037239 SMART:SM00343 ZFIN:ZDB-GENE-040426-2874
GO:GO:0005634 GO:GO:0008270 GO:GO:0003676 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 HOGENOM:HOG000205514
GeneTree:ENSGT00670000098098 KO:K12619 CTD:22803 HOVERGEN:HBG036677
OMA:RKRMKRD OrthoDB:EOG4M0F0Z EMBL:BX005124 EMBL:CT573061
IPI:IPI00835014 RefSeq:NP_001001944.2 UniGene:Dr.10637
Ensembl:ENSDART00000100246 GeneID:321940 KEGG:dre:321940
NextBio:20807592 Uniprot:A5WVY7
Length = 952
Score = 405 (147.6 bits), Expect = 5.3e-62, Sum P(2) = 5.3e-62
Identities = 75/87 (86%), Positives = 81/87 (93%)
Query: 32 QEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECID 91
+E NG KIP D+SKPNPN +EFDNLYLDMNGIIHPCTHPEDKPAPK+EDEMMVAIFE ID
Sbjct: 27 KEYNGVKIPVDTSKPNPNEVEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFEYID 86
Query: 92 RLFRIVRPRKLLYMAIDGVAPRAKMNQ 118
RLF IVRPR++LYMAIDGVAPRAKMNQ
Sbjct: 87 RLFNIVRPRRVLYMAIDGVAPRAKMNQ 113
Score = 267 (99.0 bits), Expect = 5.3e-62, Sum P(2) = 5.3e-62
Identities = 53/88 (60%), Positives = 63/88 (71%)
Query: 139 RSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSAC 198
RSRRFRASKE E E ++RE+++ G LPPE+ K FDSNCITPGT FM L+ C
Sbjct: 115 RSRRFRASKEGVELAEEKQKMREEVIERGGYLPPEEIK-ERFDSNCITPGTEFMDNLAKC 173
Query: 199 LHYYIHDRLNNDPGWKGIKVILSDANVP 226
L YY+ DRL NDPGW+ I V LSDA+VP
Sbjct: 174 LRYYVADRLTNDPGWRNITVFLSDASVP 201
>UNIPROTKB|Q60SG7 [details] [associations]
symbol:xrn-2 "5'-3' exoribonuclease 2 homolog" species:6238
"Caenorhabditis briggsae" [GO:0000738 "DNA catabolic process,
exonucleolytic" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0008409 "5'-3' exonuclease activity" evidence=ISS]
InterPro:IPR001878 InterPro:IPR004859 InterPro:IPR017151
Pfam:PF03159 PIRSF:PIRSF037239 PROSITE:PS50158 SMART:SM00343
GO:GO:0005730 GO:GO:0006355 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 GO:GO:0003676 EMBL:HE600928 GO:GO:0008409
GO:GO:0000738 GO:GO:0006353 eggNOG:COG5049 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 STRING:Q60SG7 PRIDE:Q60SG7
EnsemblMetazoa:CBG20900 WormBase:CBG20900 HOGENOM:HOG000205514
Uniprot:Q60SG7
Length = 976
Score = 370 (135.3 bits), Expect = 1.5e-61, Sum P(2) = 1.5e-61
Identities = 66/85 (77%), Positives = 76/85 (89%)
Query: 34 VNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRL 93
V+G+++P D ++PNPN EFDNLYLDMNGIIHPCTHPED+PAPK+EDEM IFE IDR+
Sbjct: 29 VDGRRVPVDCTQPNPNFQEFDNLYLDMNGIIHPCTHPEDRPAPKNEDEMFALIFEYIDRI 88
Query: 94 FRIVRPRKLLYMAIDGVAPRAKMNQ 118
F IVRPR+LLYMAIDGVAPRAKMNQ
Sbjct: 89 FSIVRPRRLLYMAIDGVAPRAKMNQ 113
Score = 299 (110.3 bits), Expect = 1.5e-61, Sum P(2) = 1.5e-61
Identities = 57/90 (63%), Positives = 69/90 (76%)
Query: 139 RSRRFRASKETAEKIAEVARIREKLLADGCILPPEK--EKGSHFDSNCITPGTPFMACLS 196
RSRRFRASKE AEK A + R +L+A+G +P +K E+ +HFDSNCITPGTPFMA L+
Sbjct: 115 RSRRFRASKEMAEKAASIEEQRRRLIAEGIAVPQKKKDEEEAHFDSNCITPGTPFMARLA 174
Query: 197 ACLHYYIHDRLNNDPGWKGIKVILSDANVP 226
L YYIHDR+ NDP W I++ILSDANVP
Sbjct: 175 DALRYYIHDRVTNDPAWANIEIILSDANVP 204
Score = 48 (22.0 bits), Expect = 3.7e-35, Sum P(2) = 3.7e-35
Identities = 30/110 (27%), Positives = 47/110 (42%)
Query: 121 TVYSVLYDRGNYSTWQLMRSRRF--RASKETA--EKIAEVARIREKLLADGCILPPEKEK 176
+VY L D Y + +R F R K A +++AE ++ + + D +L K
Sbjct: 691 SVYPTLTDEEKYRNTR-GPNRIFIGRNHKSFAFFQQVAE-SKSNDLVDLDPSLLNGVSGK 748
Query: 177 GSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDPGWKGIKVILSDANVP 226
S +DS PG PF + +S H+ + P GI V+ D P
Sbjct: 749 IS-YDSTATAPGLPFPSPVS-------HEECQDLPTNCGICVLYEDPEYP 790
>WB|WBGene00006964 [details] [associations]
symbol:xrn-2 species:6239 "Caenorhabditis elegans"
[GO:0004534 "5'-3' exoribonuclease activity" evidence=IEA;IMP;IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040028 "regulation of vulval
development" evidence=IGI] [GO:0010587 "miRNA catabolic process"
evidence=IGI;IMP;IDA] [GO:0060965 "negative regulation of gene
silencing by miRNA" evidence=IMP] [GO:0040034 "regulation of
development, heterochronic" evidence=IGI] InterPro:IPR001878
InterPro:IPR004859 InterPro:IPR017151 Pfam:PF03159
PIRSF:PIRSF037239 PROSITE:PS50158 SMART:SM00343 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0005730 GO:GO:0002119
GO:GO:0006355 GO:GO:0046872 GO:GO:0018996 GO:GO:0008270
GO:GO:0006397 GO:GO:0040011 GO:GO:0000003 GO:GO:0003676
EMBL:AL110490 GO:GO:0040034 GO:GO:0040028 GO:GO:0000738
GO:GO:0060965 GO:GO:0006353 GO:GO:0010587 eggNOG:COG5049
InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
HOGENOM:HOG000205514 PIR:T27005 RefSeq:NP_496958.2
ProteinModelPortal:Q9U299 SMR:Q9U299 DIP:DIP-24636N IntAct:Q9U299
MINT:MINT-1111930 STRING:Q9U299 PaxDb:Q9U299 PRIDE:Q9U299
EnsemblMetazoa:Y48B6A.3.1 EnsemblMetazoa:Y48B6A.3.2 GeneID:175071
KEGG:cel:CELE_Y48B6A.3 UCSC:Y48B6A.3 CTD:175071 WormBase:Y48B6A.3
GeneTree:ENSGT00670000098098 InParanoid:Q9U299 KO:K12619
OMA:TNDANET NextBio:886632 Uniprot:Q9U299
Length = 975
Score = 363 (132.8 bits), Expect = 2.5e-61, Sum P(2) = 2.5e-61
Identities = 64/87 (73%), Positives = 76/87 (87%)
Query: 32 QEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECID 91
++ +G ++P D ++PNPN EFDNLYLDMNGIIHPCTHPED+PAPK+EDEM IFE ID
Sbjct: 27 RDQDGNRVPVDCTQPNPNFQEFDNLYLDMNGIIHPCTHPEDRPAPKNEDEMFALIFEYID 86
Query: 92 RLFRIVRPRKLLYMAIDGVAPRAKMNQ 118
R++ IVRPR+LLYMAIDGVAPRAKMNQ
Sbjct: 87 RIYSIVRPRRLLYMAIDGVAPRAKMNQ 113
Score = 304 (112.1 bits), Expect = 2.5e-61, Sum P(2) = 2.5e-61
Identities = 56/88 (63%), Positives = 69/88 (78%)
Query: 139 RSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSAC 198
RSRRFRASKE AEK A + R +L+A+G +PP+K++ +HFDSNCITPGTPFMA L+
Sbjct: 115 RSRRFRASKEMAEKEASIEEQRNRLMAEGIAVPPKKKEEAHFDSNCITPGTPFMARLADA 174
Query: 199 LHYYIHDRLNNDPGWKGIKVILSDANVP 226
L YYIHDR+ ND W I++ILSDANVP
Sbjct: 175 LRYYIHDRVTNDASWANIEIILSDANVP 202
Score = 48 (22.0 bits), Expect = 2.1e-34, Sum P(2) = 2.1e-34
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 180 FDSNCITPGTPFMACLSACLHYYIHDRLNNDPGWKGIKVILSDANVP 226
+DS PG PF++ ++ HD + P GI V+ D P
Sbjct: 750 YDSTATAPGLPFVSPVN-------HDECQDLPTNCGICVLYEDPEYP 789
>UNIPROTKB|Q9U299 [details] [associations]
symbol:xrn-2 "5'-3' exoribonuclease 2 homolog" species:6239
"Caenorhabditis elegans" [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0000738
"DNA catabolic process, exonucleolytic" evidence=ISS]
InterPro:IPR001878 InterPro:IPR004859 InterPro:IPR017151
Pfam:PF03159 PIRSF:PIRSF037239 PROSITE:PS50158 SMART:SM00343
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0005730
GO:GO:0002119 GO:GO:0006355 GO:GO:0046872 GO:GO:0018996
GO:GO:0008270 GO:GO:0006397 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:AL110490 GO:GO:0040034 GO:GO:0040028
GO:GO:0000738 GO:GO:0060965 GO:GO:0006353 GO:GO:0010587
eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
HOGENOM:HOG000205514 PIR:T27005 RefSeq:NP_496958.2
ProteinModelPortal:Q9U299 SMR:Q9U299 DIP:DIP-24636N IntAct:Q9U299
MINT:MINT-1111930 STRING:Q9U299 PaxDb:Q9U299 PRIDE:Q9U299
EnsemblMetazoa:Y48B6A.3.1 EnsemblMetazoa:Y48B6A.3.2 GeneID:175071
KEGG:cel:CELE_Y48B6A.3 UCSC:Y48B6A.3 CTD:175071 WormBase:Y48B6A.3
GeneTree:ENSGT00670000098098 InParanoid:Q9U299 KO:K12619
OMA:TNDANET NextBio:886632 Uniprot:Q9U299
Length = 975
Score = 363 (132.8 bits), Expect = 2.5e-61, Sum P(2) = 2.5e-61
Identities = 64/87 (73%), Positives = 76/87 (87%)
Query: 32 QEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECID 91
++ +G ++P D ++PNPN EFDNLYLDMNGIIHPCTHPED+PAPK+EDEM IFE ID
Sbjct: 27 RDQDGNRVPVDCTQPNPNFQEFDNLYLDMNGIIHPCTHPEDRPAPKNEDEMFALIFEYID 86
Query: 92 RLFRIVRPRKLLYMAIDGVAPRAKMNQ 118
R++ IVRPR+LLYMAIDGVAPRAKMNQ
Sbjct: 87 RIYSIVRPRRLLYMAIDGVAPRAKMNQ 113
Score = 304 (112.1 bits), Expect = 2.5e-61, Sum P(2) = 2.5e-61
Identities = 56/88 (63%), Positives = 69/88 (78%)
Query: 139 RSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSAC 198
RSRRFRASKE AEK A + R +L+A+G +PP+K++ +HFDSNCITPGTPFMA L+
Sbjct: 115 RSRRFRASKEMAEKEASIEEQRNRLMAEGIAVPPKKKEEAHFDSNCITPGTPFMARLADA 174
Query: 199 LHYYIHDRLNNDPGWKGIKVILSDANVP 226
L YYIHDR+ ND W I++ILSDANVP
Sbjct: 175 LRYYIHDRVTNDASWANIEIILSDANVP 202
Score = 48 (22.0 bits), Expect = 2.1e-34, Sum P(2) = 2.1e-34
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 180 FDSNCITPGTPFMACLSACLHYYIHDRLNNDPGWKGIKVILSDANVP 226
+DS PG PF++ ++ HD + P GI V+ D P
Sbjct: 750 YDSTATAPGLPFVSPVN-------HDECQDLPTNCGICVLYEDPEYP 789
>TAIR|locus:2005614 [details] [associations]
symbol:XRN3 "5'-3' exoribonuclease 3" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0004534 "5'-3' exoribonuclease activity" evidence=IEA;IGI;ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0010587 "miRNA
catabolic process" evidence=IMP] [GO:0006310 "DNA recombination"
evidence=RCA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0007062 "sister chromatid cohesion" evidence=RCA] [GO:0007126
"meiosis" evidence=RCA] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA] [GO:0009887 "organ morphogenesis"
evidence=RCA] [GO:0009888 "tissue development" evidence=RCA]
[GO:0010332 "response to gamma radiation" evidence=RCA] [GO:0010638
"positive regulation of organelle organization" evidence=RCA]
[GO:0016558 "protein import into peroxisome matrix" evidence=RCA]
[GO:0031048 "chromatin silencing by small RNA" evidence=RCA]
[GO:0032204 "regulation of telomere maintenance" evidence=RCA]
[GO:0033044 "regulation of chromosome organization" evidence=RCA]
[GO:0042138 "meiotic DNA double-strand break formation"
evidence=RCA] [GO:0043247 "telomere maintenance in response to DNA
damage" evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] InterPro:IPR001878 InterPro:IPR004859
InterPro:IPR017151 Pfam:PF00098 Pfam:PF03159 PIRSF:PIRSF037239
PROSITE:PS50158 SMART:SM00343 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AC006434
GO:GO:0010587 eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341
GO:GO:0004534 HOGENOM:HOG000205514 KO:K12619 EMBL:AF286719
EMBL:AY136383 EMBL:BT000175 IPI:IPI00542756 IPI:IPI00903453
PIR:D96786 RefSeq:NP_565114.1 UniGene:At.23685
ProteinModelPortal:Q9FQ03 SMR:Q9FQ03 STRING:Q9FQ03 PaxDb:Q9FQ03
PRIDE:Q9FQ03 EnsemblPlants:AT1G75660.1 GeneID:843900
KEGG:ath:AT1G75660 TAIR:At1g75660 InParanoid:Q9FQ03 OMA:ILREVVY
PhylomeDB:Q9FQ03 Genevestigator:Q9FQ03 Uniprot:Q9FQ03
Length = 1020
Score = 348 (127.6 bits), Expect = 2.9e-54, Sum P(2) = 2.9e-54
Identities = 63/88 (71%), Positives = 74/88 (84%)
Query: 31 PQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECI 90
P E+ G KIP D+SKPNPN +E+DNLYLDMNGIIHPC HPED+P+P +E+ +F+ I
Sbjct: 26 PVEIEGIKIPVDTSKPNPNNLEYDNLYLDMNGIIHPCFHPEDRPSPTTFEEVFQCMFDYI 85
Query: 91 DRLFRIVRPRKLLYMAIDGVAPRAKMNQ 118
DRLF +VRPRKLLYMAIDGVAPRAKMNQ
Sbjct: 86 DRLFVMVRPRKLLYMAIDGVAPRAKMNQ 113
Score = 253 (94.1 bits), Expect = 2.9e-54, Sum P(2) = 2.9e-54
Identities = 52/88 (59%), Positives = 62/88 (70%)
Query: 139 RSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSAC 198
RSRRFR++K+ ++ AE R+RE+ +G LPP K FDSN ITPGT FM LS
Sbjct: 115 RSRRFRSAKDASDAAAEEERLREEFEREGRRLPP-KVDSQVFDSNVITPGTEFMGVLSIA 173
Query: 199 LHYYIHDRLNNDPGWKGIKVILSDANVP 226
L YY+H RLN+D GWK IKVILSDANVP
Sbjct: 174 LQYYVHLRLNHDVGWKNIKVILSDANVP 201
>TAIR|locus:2020073 [details] [associations]
symbol:XRN4 "exoribonuclease 4" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA;ISS]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0004534 "5'-3'
exoribonuclease activity" evidence=IEA;IGI;IMP] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA;IDA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] [GO:0009630 "gravitropism" evidence=RCA;IMP]
[GO:0009723 "response to ethylene stimulus" evidence=IMP]
[GO:0009873 "ethylene mediated signaling pathway" evidence=IGI;IMP]
[GO:0009961 "response to 1-aminocyclopropane-1-carboxylic acid"
evidence=IMP] [GO:0009826 "unidimensional cell growth"
evidence=IMP] [GO:0000291 "nuclear-transcribed mRNA catabolic
process, exonucleolytic" evidence=IMP] [GO:0031087
"deadenylation-independent decapping of nuclear-transcribed mRNA"
evidence=IMP] [GO:0040029 "regulation of gene expression,
epigenetic" evidence=IMP] [GO:0010587 "miRNA catabolic process"
evidence=IMP] [GO:0005829 "cytosol" evidence=IDA] [GO:0000003
"reproduction" evidence=RCA] [GO:0000956 "nuclear-transcribed mRNA
catabolic process" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0006325 "chromatin organization" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006487
"protein N-linked glycosylation" evidence=RCA] [GO:0007131
"reciprocal meiotic recombination" evidence=RCA] [GO:0007155 "cell
adhesion" evidence=RCA] [GO:0007267 "cell-cell signaling"
evidence=RCA] [GO:0008284 "positive regulation of cell
proliferation" evidence=RCA] [GO:0009616 "virus induced gene
silencing" evidence=RCA] [GO:0010014 "meristem initiation"
evidence=RCA] [GO:0010090 "trichome morphogenesis" evidence=RCA]
[GO:0010267 "production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0010413 "glucuronoxylan metabolic process"
evidence=RCA] [GO:0010638 "positive regulation of organelle
organization" evidence=RCA] [GO:0016049 "cell growth" evidence=RCA]
[GO:0033044 "regulation of chromosome organization" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] [GO:0043687 "post-translational protein
modification" evidence=RCA] [GO:0045010 "actin nucleation"
evidence=RCA] [GO:0045492 "xylan biosynthetic process"
evidence=RCA] [GO:0045595 "regulation of cell differentiation"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0048589 "developmental growth"
evidence=RCA] InterPro:IPR001878 InterPro:IPR004859
InterPro:IPR017151 Pfam:PF00098 Pfam:PF03159 PIRSF:PIRSF037239
PROSITE:PS50158 SMART:SM00343 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0009873
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 GO:GO:0003676
EMBL:AC005287 GO:GO:0009826 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0040029 GO:GO:0031087 GO:GO:0000291 GO:GO:0010587
eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
HOGENOM:HOG000205514 KO:K12619 EMBL:AF286718 EMBL:AY064012
EMBL:AY091411 IPI:IPI00520526 PIR:G96586 RefSeq:NP_175851.1
UniGene:At.16935 ProteinModelPortal:Q9FQ04 SMR:Q9FQ04 STRING:Q9FQ04
PaxDb:Q9FQ04 PRIDE:Q9FQ04 EnsemblPlants:AT1G54490.1 GeneID:841891
KEGG:ath:AT1G54490 TAIR:At1g54490 InParanoid:Q9FQ04 OMA:SWEWYFP
PhylomeDB:Q9FQ04 ProtClustDB:CLSN2682416 Genevestigator:Q9FQ04
Uniprot:Q9FQ04
Length = 947
Score = 329 (120.9 bits), Expect = 1.5e-52, Sum P(2) = 1.5e-52
Identities = 64/103 (62%), Positives = 76/103 (73%)
Query: 18 DSKPYSFASLVSL-PQEVN-GQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPA 75
D P S + +V P + G IP D ++PNPNG EFDNLYLDMNGIIHPC HPE KPA
Sbjct: 12 DRYPKSISDVVEEEPTDGGRGDLIPVDITRPNPNGFEFDNLYLDMNGIIHPCFHPEGKPA 71
Query: 76 PKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQ 118
P D++ ++FE ID LF +VRPRK+LY+AIDGVAPRAKMNQ
Sbjct: 72 PATYDDVFKSMFEYIDHLFTLVRPRKILYLAIDGVAPRAKMNQ 114
Score = 255 (94.8 bits), Expect = 1.5e-52, Sum P(2) = 1.5e-52
Identities = 53/88 (60%), Positives = 63/88 (71%)
Query: 139 RSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSAC 198
RSRRFRA+K+ AE AE R+R+ +G IL KEK DSN ITPGTPFMA LS
Sbjct: 116 RSRRFRAAKDAAEAEAEEERLRKDFEMEGQILSA-KEKAETCDSNVITPGTPFMAILSVA 174
Query: 199 LHYYIHDRLNNDPGWKGIKVILSDANVP 226
L YYI RLN++PGW+ +KVILSD+NVP
Sbjct: 175 LQYYIQSRLNHNPGWRYVKVILSDSNVP 202
>UNIPROTKB|B4DZC3 [details] [associations]
symbol:XRN2 "5'-3' exoribonuclease 2" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004534 "5'-3' exoribonuclease activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0016049 "cell growth"
evidence=IEA] [GO:0016070 "RNA metabolic process" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0016235 "aggresome" evidence=IDA]
InterPro:IPR001878 InterPro:IPR004859 InterPro:IPR017151
Pfam:PF03159 PIRSF:PIRSF037239 SMART:SM00343 GO:GO:0005730
GO:GO:0016049 GO:GO:0008270 GO:GO:0003676 GO:GO:0016235
GO:GO:0016070 EMBL:AL158013 InterPro:IPR027073 PANTHER:PTHR12341
GO:GO:0004534 HOVERGEN:HBG036677 EMBL:AL117332 UniGene:Hs.255932
HGNC:HGNC:12836 ChiTaRS:XRN2 EMBL:AK302846 IPI:IPI01012839
SMR:B4DZC3 STRING:B4DZC3 Ensembl:ENST00000539513 Uniprot:B4DZC3
Length = 896
Score = 292 (107.8 bits), Expect = 1.9e-52, Sum P(2) = 1.9e-52
Identities = 55/59 (93%), Positives = 57/59 (96%)
Query: 60 MNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQ 118
MNGIIHPCTHPEDKPAPK+EDEMMVAIFE IDRLF IVRPR+LLYMAIDGVAPRAKMNQ
Sbjct: 1 MNGIIHPCTHPEDKPAPKNEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAKMNQ 59
Score = 291 (107.5 bits), Expect = 1.9e-52, Sum P(2) = 1.9e-52
Identities = 58/88 (65%), Positives = 65/88 (73%)
Query: 139 RSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSAC 198
RSRRFRASKE E E R+RE++LA G LPPE+ K FDSNCITPGT FM L+ C
Sbjct: 61 RSRRFRASKEGMEAAVEKQRVREEILAKGGFLPPEEIK-ERFDSNCITPGTEFMDNLAKC 119
Query: 199 LHYYIHDRLNNDPGWKGIKVILSDANVP 226
L YYI DRLNNDPGWK + VILSDA+ P
Sbjct: 120 LRYYIADRLNNDPGWKNLTVILSDASAP 147
>POMBASE|SPAC26A3.12c [details] [associations]
symbol:dhp1 "5'-3' exoribonuclease Dhp1" species:4896
"Schizosaccharomyces pombe" [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0004534 "5'-3' exoribonuclease
activity" evidence=IGI] [GO:0005634 "nucleus" evidence=ISO;IGI;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006995 "cellular response to nitrogen starvation"
evidence=IMP] [GO:0030846 "termination of RNA polymerase II
transcription, poly(A)-coupled" evidence=ISO] [GO:0070317 "negative
regulation of G0 to G1 transition" evidence=IMP] InterPro:IPR004859
InterPro:IPR017151 Pfam:PF03159 PIRSF:PIRSF037239
PomBase:SPAC26A3.12c GO:GO:0005634 EMBL:CU329670 GO:GO:0070317
GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0006397 GO:GO:0003676
GO:GO:0000070 GO:GO:0006995 GO:GO:0006364 PDB:3FQD PDBsum:3FQD
GO:GO:0030846 eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341
GO:GO:0004534 HOGENOM:HOG000205514 KO:K12619 EMBL:D17752 PIR:S43891
RefSeq:NP_594155.1 DIP:DIP-59743N STRING:P40848
EnsemblFungi:SPAC26A3.12c.1 GeneID:2542674 KEGG:spo:SPAC26A3.12c
OMA:INSEPAL OrthoDB:EOG43NBMS NextBio:20803722 Uniprot:P40848
Length = 991
Score = 334 (122.6 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 62/94 (65%), Positives = 77/94 (81%)
Query: 27 LVSLPQEV--NGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMV 84
++ P E +G +I D S PNPNG+E DNLYLDMNGI+HPC+HPED+PAP+ EDEMMV
Sbjct: 21 VIEAPTEKLPDGTEIEPDLSLPNPNGVECDNLYLDMNGIVHPCSHPEDRPAPETEDEMMV 80
Query: 85 AIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQ 118
A+FE DR+ +VRPR+LL++AIDGVAPRAKMNQ
Sbjct: 81 AVFEYTDRILAMVRPRQLLFIAIDGVAPRAKMNQ 114
Score = 214 (80.4 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 43/88 (48%), Positives = 57/88 (64%)
Query: 139 RSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSAC 198
RSRRFR+S+E A K E+ E+ G + K +DSNCITPGTPFM L+
Sbjct: 116 RSRRFRSSREAALKEEELQAFIEEAKQQGIPIDENATKKKSWDSNCITPGTPFMDTLAKS 175
Query: 199 LHYYIHDRLNNDPGWKGIKVILSDANVP 226
L YYI ++LN+DP W+ ++ ILSDA+VP
Sbjct: 176 LRYYIINKLNSDPCWRNVRFILSDASVP 203
>SGD|S000005574 [details] [associations]
symbol:RAT1 "Nuclear 5' to 3' single-stranded RNA
exonuclease" species:4932 "Saccharomyces cerevisiae" [GO:0006364
"rRNA processing" evidence=IEA;IMP] [GO:0030846 "termination of RNA
polymerase II transcription, poly(A)-coupled" evidence=IMP]
[GO:0030847 "termination of RNA polymerase II transcription,
exosome-dependent" evidence=IGI;IMP] [GO:0006396 "RNA processing"
evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0004534
"5'-3' exoribonuclease activity" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0090305 "nucleic acid
phosphodiester bond hydrolysis" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0071028 "nuclear mRNA surveillance"
evidence=IGI;IMP] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006353 "DNA-dependent transcription, termination"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=IEA] InterPro:IPR004859
InterPro:IPR017151 Pfam:PF03159 PIRSF:PIRSF037239 SGD:S000005574
GO:GO:0005739 GO:GO:0005634 EMBL:BK006948 GO:GO:0006355
GO:GO:0006397 GO:GO:0003676 GO:GO:0006364 GO:GO:0030846
GO:GO:0071028 GO:GO:0030847 EMBL:L06011 eggNOG:COG5049
InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
HOGENOM:HOG000205514 GeneTree:ENSGT00670000098098 KO:K12619
OrthoDB:EOG43NBMS EMBL:M95626 EMBL:Z11746 EMBL:S61567 EMBL:Z74956
PIR:S20126 RefSeq:NP_014691.1 ProteinModelPortal:Q02792 SMR:Q02792
DIP:DIP-6692N IntAct:Q02792 MINT:MINT-639904 STRING:Q02792
PaxDb:Q02792 PeptideAtlas:Q02792 EnsemblFungi:YOR048C GeneID:854213
KEGG:sce:YOR048C OMA:NMVRPRK NextBio:976071 Genevestigator:Q02792
GermOnline:YOR048C Uniprot:Q02792
Length = 1006
Score = 314 (115.6 bits), Expect = 1.5e-42, Sum P(2) = 1.5e-42
Identities = 57/88 (64%), Positives = 71/88 (80%)
Query: 31 PQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECI 90
PQ V+G +P D S NPNG E DNLYLDMNGI+HPC+HPE+KP P+ EDEM++A+FE
Sbjct: 26 PQIVDGVILPLDYSASNPNG-ELDNLYLDMNGIVHPCSHPENKPPPETEDEMLLAVFEYT 84
Query: 91 DRLFRIVRPRKLLYMAIDGVAPRAKMNQ 118
+R+ + RPRK+L MA+DGVAPRAKMNQ
Sbjct: 85 NRVLNMARPRKVLVMAVDGVAPRAKMNQ 112
Score = 176 (67.0 bits), Expect = 1.5e-42, Sum P(2) = 1.5e-42
Identities = 40/91 (43%), Positives = 56/91 (61%)
Query: 139 RSRRFRASKETA---EKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACL 195
R+RRFR++++ E E+ R RE++ G I+ +DSN ITPGTPFM L
Sbjct: 114 RARRFRSARDAQIENEAREEIMRQREEV---GEIIDDAVRNKKTWDSNAITPGTPFMDKL 170
Query: 196 SACLHYYIHDRLNNDPGWKGIKVILSDANVP 226
+A L Y+ +L DPGWK ++VI+SDA VP
Sbjct: 171 AAALRYWTAFKLATDPGWKNLQVIISDATVP 201
>CGD|CAL0003816 [details] [associations]
symbol:RAT1 species:5476 "Candida albicans" [GO:0004534
"5'-3' exoribonuclease activity" evidence=IGI] [GO:0008017
"microtubule binding" evidence=IGI] [GO:0000150 "recombinase
activity" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0030846 "termination
of RNA polymerase II transcription, poly(A)-coupled" evidence=IEA]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0030847 "termination of RNA
polymerase II transcription, exosome-dependent" evidence=IEA]
InterPro:IPR004859 InterPro:IPR017151 Pfam:PF03159
PIRSF:PIRSF037239 CGD:CAL0003816 GO:GO:0005634 GO:GO:0006355
GO:GO:0006397 GO:GO:0003676 GO:GO:0008017 EMBL:AACQ01000005
EMBL:AACQ01000006 GO:GO:0006364 GO:GO:0006353 GO:GO:0000150
eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
KO:K12619 RefSeq:XP_722750.1 RefSeq:XP_722895.1 STRING:Q5AMG5
GeneID:3635468 GeneID:3635686 KEGG:cal:CaO19.12150
KEGG:cal:CaO19.4681 Uniprot:Q5AMG5
Length = 968
Score = 272 (100.8 bits), Expect = 1.6e-38, Sum P(2) = 1.6e-38
Identities = 52/86 (60%), Positives = 63/86 (73%)
Query: 33 EVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDR 92
E+ G K PNPNG E DNLYLDMNGI+HPC+HPE K P+ EDEM + IF+ DR
Sbjct: 28 EIGGAKY----ENPNPNG-EIDNLYLDMNGIVHPCSHPEHKKPPETEDEMFLDIFKYTDR 82
Query: 93 LFRIVRPRKLLYMAIDGVAPRAKMNQ 118
+ + RPRK+L +A+DGVAPRAKMNQ
Sbjct: 83 VLMMARPRKVLMIAVDGVAPRAKMNQ 108
Score = 180 (68.4 bits), Expect = 1.6e-38, Sum P(2) = 1.6e-38
Identities = 39/89 (43%), Positives = 57/89 (64%)
Query: 139 RSRRFRASKETAEKIAEVA-RIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSA 197
R+RRFRA+K+ K ++ ++E+ L I K K +DSN ITPGTPFM L+
Sbjct: 110 RARRFRAAKDAELKAKQLEIEVQERELRGEIINDAIKGK-KQWDSNAITPGTPFMDRLAE 168
Query: 198 CLHYYIHDRLNNDPGWKGIKVILSDANVP 226
L Y++ +L++DPGW ++VI+SDA VP
Sbjct: 169 ALRYWVAYKLSSDPGWANLQVIISDATVP 197
>UNIPROTKB|Q5AMG5 [details] [associations]
symbol:RAT1 "5'-3' exoribonuclease 2" species:237561
"Candida albicans SC5314" [GO:0000150 "recombinase activity"
evidence=IGI] [GO:0004534 "5'-3' exoribonuclease activity"
evidence=IGI] [GO:0006310 "DNA recombination" evidence=IGI]
[GO:0008017 "microtubule binding" evidence=IGI] InterPro:IPR004859
InterPro:IPR017151 Pfam:PF03159 PIRSF:PIRSF037239 CGD:CAL0003816
GO:GO:0005634 GO:GO:0006355 GO:GO:0006397 GO:GO:0003676
GO:GO:0008017 EMBL:AACQ01000005 EMBL:AACQ01000006 GO:GO:0006364
GO:GO:0006353 GO:GO:0000150 eggNOG:COG5049 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 KO:K12619 RefSeq:XP_722750.1
RefSeq:XP_722895.1 STRING:Q5AMG5 GeneID:3635468 GeneID:3635686
KEGG:cal:CaO19.12150 KEGG:cal:CaO19.4681 Uniprot:Q5AMG5
Length = 968
Score = 272 (100.8 bits), Expect = 1.6e-38, Sum P(2) = 1.6e-38
Identities = 52/86 (60%), Positives = 63/86 (73%)
Query: 33 EVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDR 92
E+ G K PNPNG E DNLYLDMNGI+HPC+HPE K P+ EDEM + IF+ DR
Sbjct: 28 EIGGAKY----ENPNPNG-EIDNLYLDMNGIVHPCSHPEHKKPPETEDEMFLDIFKYTDR 82
Query: 93 LFRIVRPRKLLYMAIDGVAPRAKMNQ 118
+ + RPRK+L +A+DGVAPRAKMNQ
Sbjct: 83 VLMMARPRKVLMIAVDGVAPRAKMNQ 108
Score = 180 (68.4 bits), Expect = 1.6e-38, Sum P(2) = 1.6e-38
Identities = 39/89 (43%), Positives = 57/89 (64%)
Query: 139 RSRRFRASKETAEKIAEVA-RIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSA 197
R+RRFRA+K+ K ++ ++E+ L I K K +DSN ITPGTPFM L+
Sbjct: 110 RARRFRAAKDAELKAKQLEIEVQERELRGEIINDAIKGK-KQWDSNAITPGTPFMDRLAE 168
Query: 198 CLHYYIHDRLNNDPGWKGIKVILSDANVP 226
L Y++ +L++DPGW ++VI+SDA VP
Sbjct: 169 ALRYWVAYKLSSDPGWANLQVIISDATVP 197
>DICTYBASE|DDB_G0269922 [details] [associations]
symbol:xrn2 "CCHC-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0004534
"5'-3' exoribonuclease activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001878 InterPro:IPR004859
InterPro:IPR017151 Pfam:PF03159 PIRSF:PIRSF037239 PROSITE:PS50158
SMART:SM00343 dictyBase:DDB_G0269922 GO:GO:0005634
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0008270
GO:GO:0003676 Gene3D:4.10.60.10 eggNOG:COG5049 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 KO:K12619 RefSeq:XP_646407.1
STRING:Q55CS4 EnsemblProtists:DDB0237528 GeneID:8617364
KEGG:ddi:DDB_G0269922 InParanoid:Q55CS4 Uniprot:Q55CS4
Length = 1190
Score = 421 (153.3 bits), Expect = 3.3e-38, P = 3.3e-38
Identities = 91/199 (45%), Positives = 122/199 (61%)
Query: 31 PQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECI 90
P+E +G + D + PNPNG E+DNLYLDMNGIIHPC HPE P PK ++M+ +I+E +
Sbjct: 24 PREADGGRSVVDFTTPNPNG-EYDNLYLDMNGIIHPCAHPEKGPKPKSIEDMIQSIYEYL 82
Query: 91 DRLFRIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETA 150
D LF I+RPRKL+YMA+DGVAPRAKMNQ T ++ R KE A
Sbjct: 83 DLLFAIIRPRKLIYMAVDGVAPRAKMNQQRT-----------RRFRAALDSRLDKDKEAA 131
Query: 151 ---EKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRL 207
E+I + +++ EK+ FDSNCITPGT FM ++ L Y+ ++L
Sbjct: 132 LWRERIYDGLATQQEYEQ----YMEEKKNKFKFDSNCITPGTLFMDRVAESLRTYVAEKL 187
Query: 208 NNDPGWKGIKVILSDANVP 226
DP WK +K+I+SDA+VP
Sbjct: 188 TTDPAWKDVKIIISDASVP 206
>ZFIN|ZDB-GENE-040426-1203 [details] [associations]
symbol:xrn1 "5'-3' exoribonuclease 1" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR004859
InterPro:IPR016494 Pfam:PF03159 PIRSF:PIRSF006743
ZFIN:ZDB-GENE-040426-1203 GO:GO:0003676 GO:GO:0005622 GO:GO:0008409
CTD:54464 KO:K12618 InterPro:IPR027073 PANTHER:PTHR12341
GeneTree:ENSGT00670000098080 EMBL:CU929319 IPI:IPI00498230
RefSeq:NP_957327.2 UniGene:Dr.69803 Ensembl:ENSDART00000125413
GeneID:394008 KEGG:dre:394008 NextBio:20814974 ArrayExpress:F1Q4U5
Bgee:F1Q4U5 Uniprot:F1Q4U5
Length = 1697
Score = 221 (82.9 bits), Expect = 9.2e-33, Sum P(2) = 9.2e-33
Identities = 41/69 (59%), Positives = 53/69 (76%)
Query: 52 EFDNLYLDMNGIIHPCTHPEDKPAPK--DEDEMMVAIFECIDRLFRIVRPRKLLYMAIDG 109
EFDNLYLDMNGIIH C+HP D+ E+++ IF ++ LFRI++PRK+ +MA+DG
Sbjct: 28 EFDNLYLDMNGIIHQCSHPNDEDVHFRISEEKIFADIFHYLEVLFRIIKPRKVFFMAVDG 87
Query: 110 VAPRAKMNQ 118
VAPRAKMNQ
Sbjct: 88 VAPRAKMNQ 96
Score = 183 (69.5 bits), Expect = 9.2e-33, Sum P(2) = 9.2e-33
Identities = 41/88 (46%), Positives = 53/88 (60%)
Query: 139 RSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSAC 198
R RRFR++KE EKI +K L G +LP E + FDSNCITPGT FMA L
Sbjct: 98 RGRRFRSAKEAEEKI-------KKALEKGEVLPTE----ARFDSNCITPGTDFMARLQEQ 146
Query: 199 LHYYIHDRLNNDPGWKGIKVILSDANVP 226
L Y++H++L+ D W+G+ V LS P
Sbjct: 147 LKYFVHNKLSTDKTWQGVNVYLSGHETP 174
>UNIPROTKB|E1C8R7 [details] [associations]
symbol:XRN1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0005794 "Golgi
apparatus" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0016075 "rRNA catabolic process" evidence=IEA]
[GO:0045111 "intermediate filament cytoskeleton" evidence=IEA]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA] [GO:0071044
"histone mRNA catabolic process" evidence=IEA] InterPro:IPR004859
InterPro:IPR016494 Pfam:PF03159 PIRSF:PIRSF006743 GO:GO:0005886
GO:GO:0005794 GO:GO:0003676 GO:GO:0045111 GO:GO:0016075
GO:GO:0071044 GO:GO:0008409 GO:GO:0071028 CTD:54464 KO:K12618
OMA:CKQRKSN InterPro:IPR027073 PANTHER:PTHR12341
GeneTree:ENSGT00670000098080 EMBL:AADN02024099 IPI:IPI00596046
RefSeq:XP_422596.3 UniGene:Gga.23111 Ensembl:ENSGALT00000004266
GeneID:424778 KEGG:gga:424778 Uniprot:E1C8R7
Length = 1736
Score = 223 (83.6 bits), Expect = 1.7e-31, Sum P(2) = 1.7e-31
Identities = 42/69 (60%), Positives = 52/69 (75%)
Query: 52 EFDNLYLDMNGIIHPCTHPEDKPAPK--DEDEMMVAIFECIDRLFRIVRPRKLLYMAIDG 109
EFDNLYLDMNGIIH C+HP D ED++ IF ++ LFRI++PRK+ +MA+DG
Sbjct: 28 EFDNLYLDMNGIIHQCSHPNDDDVHFRISEDKIFADIFHYLEVLFRIIKPRKVFFMAVDG 87
Query: 110 VAPRAKMNQ 118
VAPRAKMNQ
Sbjct: 88 VAPRAKMNQ 96
Score = 169 (64.5 bits), Expect = 1.7e-31, Sum P(2) = 1.7e-31
Identities = 40/88 (45%), Positives = 52/88 (59%)
Query: 139 RSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSAC 198
R RRFR++KE +KI +K L G ILP E + FDSNCITPGT FMA L
Sbjct: 98 RGRRFRSAKEAEDKI-------KKALEKGEILPTE----ARFDSNCITPGTEFMARLHEH 146
Query: 199 LHYYIHDRLNNDPGWKGIKVILSDANVP 226
L Y+++ +++ D W+GI V LS P
Sbjct: 147 LKYFVNMKISTDKSWQGITVYLSGHETP 174
Score = 45 (20.9 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 159 IREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHY 201
++E L DG L E SH + +PG C A L Y
Sbjct: 1404 LKEILKIDGSDLETRNEAKSHVNDVPASPGR--QDCHGAALQY 1444
>ASPGD|ASPL0000014026 [details] [associations]
symbol:AN11052 species:162425 "Emericella nidulans"
[GO:0000287 "magnesium ion binding" evidence=IEA] [GO:0004534
"5'-3' exoribonuclease activity" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR004859 InterPro:IPR016494 Pfam:PF03159
PIRSF:PIRSF006743 GO:GO:0003676 GO:GO:0005622 EMBL:BN001302
GO:GO:0008409 OMA:CKQRKSN InterPro:IPR027073 PANTHER:PTHR12341
EnsemblFungi:CADANIAT00004228 Uniprot:C8V746
Length = 1398
Score = 225 (84.3 bits), Expect = 2.1e-31, Sum P(2) = 2.1e-31
Identities = 43/69 (62%), Positives = 54/69 (78%)
Query: 52 EFDNLYLDMNGIIHPCTHPE-DKPAPK-DEDEMMVAIFECIDRLFRIVRPRKLLYMAIDG 109
EFDNLYLDMNGIIH CTH + D P + ED+M +AIF I+ L+ ++P+KL +MA+DG
Sbjct: 28 EFDNLYLDMNGIIHNCTHKDSDSPTFRMTEDKMFIAIFNYIEHLYGKIKPKKLFFMAVDG 87
Query: 110 VAPRAKMNQ 118
VAPRAKMNQ
Sbjct: 88 VAPRAKMNQ 96
Score = 164 (62.8 bits), Expect = 2.1e-31, Sum P(2) = 2.1e-31
Identities = 38/88 (43%), Positives = 54/88 (61%)
Query: 139 RSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSAC 198
R+RRFR + + AE A+ EK +A G +P E FDSNCITPGT FMA L+
Sbjct: 98 RARRFRTALD-----AEQAK--EKAIAQGIEMPKEDP----FDSNCITPGTEFMAKLTEQ 146
Query: 199 LHYYIHDRLNNDPGWKGIKVILSDANVP 226
L Y+I +++ D W+G++++LS VP
Sbjct: 147 LKYFISKKISEDKDWQGVEIVLSGHEVP 174
>POMBASE|SPAC17A5.14 [details] [associations]
symbol:exo2 "exonuclease II Exo2" species:4896
"Schizosaccharomyces pombe" [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=IDA] [GO:0000741
"karyogamy" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004534 "5'-3' exoribonuclease activity" evidence=IDA]
[GO:0004540 "ribonuclease activity" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0005874 "microtubule" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=ISO] [GO:0006402 "mRNA catabolic process"
evidence=ISO] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0004523 "ribonuclease H activity" evidence=IDA]
InterPro:IPR004859 InterPro:IPR016494 Pfam:PF03159
PIRSF:PIRSF006743 PomBase:SPAC17A5.14 GO:GO:0005829 GO:GO:0048471
EMBL:CU329670 GO:GO:0000184 GenomeReviews:CU329670_GR GO:GO:0000287
GO:GO:0003723 GO:GO:0000932 GO:GO:0006402 GO:GO:0005874
GO:GO:0006364 GO:GO:0000741 eggNOG:COG5049 KO:K12618 OMA:CKQRKSN
InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534 EMBL:L35232
PIR:S78457 RefSeq:NP_593482.1 STRING:P40383
EnsemblFungi:SPAC17A5.14.1 GeneID:2542204 KEGG:spo:SPAC17A5.14
HOGENOM:HOG000160331 OrthoDB:EOG4PP1R0 NextBio:20803274
Uniprot:P40383
Length = 1328
Score = 233 (87.1 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
Identities = 44/69 (63%), Positives = 53/69 (76%)
Query: 52 EFDNLYLDMNGIIHPCTHPEDKPA--PKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDG 109
EFDNLYLDMNGI+H CTH D + P E+EM +AIF I+ LF ++P+KLLYMA+DG
Sbjct: 28 EFDNLYLDMNGILHNCTHKNDDHSSPPLPEEEMYIAIFNYIEHLFEKIKPKKLLYMAVDG 87
Query: 110 VAPRAKMNQ 118
APRAKMNQ
Sbjct: 88 CAPRAKMNQ 96
Score = 155 (59.6 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
Identities = 38/88 (43%), Positives = 53/88 (60%)
Query: 139 RSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSAC 198
RSRRFR +K+ A AR++ + +G P E+ FDSNCITPGT FM +S
Sbjct: 98 RSRRFRTAKD-----AHDARLKAE--RNGEDFPEEQ-----FDSNCITPGTTFMERVSRQ 145
Query: 199 LHYYIHDRLNNDPGWKGIKVILSDANVP 226
L+Y+IH ++ ND W+ I+VI S + P
Sbjct: 146 LYYFIHKKVTNDSQWQNIEVIFSGHDCP 173
>UNIPROTKB|E1BMZ8 [details] [associations]
symbol:E1BMZ8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071044 "histone mRNA catabolic process" evidence=IEA]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0005886 "plasma
membrane" evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA]
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR004859
InterPro:IPR016494 Pfam:PF03159 PIRSF:PIRSF006743 GO:GO:0005886
GO:GO:0005794 GO:GO:0003676 GO:GO:0045111 GO:GO:0016075
GO:GO:0071044 GO:GO:0008409 GO:GO:0071028 OMA:CKQRKSN
InterPro:IPR027073 PANTHER:PTHR12341 GeneTree:ENSGT00670000098080
EMBL:DAAA02002875 EMBL:DAAA02002876 EMBL:DAAA02002877
IPI:IPI00689341 Ensembl:ENSBTAT00000015318 Uniprot:E1BMZ8
Length = 1723
Score = 220 (82.5 bits), Expect = 4.0e-30, Sum P(2) = 4.0e-30
Identities = 41/69 (59%), Positives = 52/69 (75%)
Query: 52 EFDNLYLDMNGIIHPCTHPEDKPAPK--DEDEMMVAIFECIDRLFRIVRPRKLLYMAIDG 109
EFDNLYLDMNGIIH C+HP D +D++ IF ++ LFRI++PRK+ +MA+DG
Sbjct: 28 EFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDG 87
Query: 110 VAPRAKMNQ 118
VAPRAKMNQ
Sbjct: 88 VAPRAKMNQ 96
Score = 159 (61.0 bits), Expect = 4.0e-30, Sum P(2) = 4.0e-30
Identities = 36/88 (40%), Positives = 50/88 (56%)
Query: 139 RSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSAC 198
R RRFR++KE EKI +K + G LP E + FDSNCITPGT FMA L
Sbjct: 98 RGRRFRSAKEAEEKI-------KKAIEKGETLPAE----ARFDSNCITPGTEFMARLHEH 146
Query: 199 LHYYIHDRLNNDPGWKGIKVILSDANVP 226
L Y+++ +++ D W+G+ + S P
Sbjct: 147 LKYFVNMKISTDKSWQGVTIYFSGHETP 174
>UNIPROTKB|F6XNM6 [details] [associations]
symbol:XRN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IEA]
InterPro:IPR004859 InterPro:IPR016494 Pfam:PF03159
PIRSF:PIRSF006743 GO:GO:0003676 GO:GO:0005622 GO:GO:0008409
InterPro:IPR027073 PANTHER:PTHR12341 GeneTree:ENSGT00670000098080
EMBL:AAEX03013647 Ensembl:ENSCAFT00000012512 Uniprot:F6XNM6
Length = 1702
Score = 220 (82.5 bits), Expect = 4.9e-30, Sum P(2) = 4.9e-30
Identities = 41/69 (59%), Positives = 52/69 (75%)
Query: 52 EFDNLYLDMNGIIHPCTHPEDKPAPK--DEDEMMVAIFECIDRLFRIVRPRKLLYMAIDG 109
EFDNLYLDMNGIIH C+HP D +D++ IF ++ LFRI++PRK+ +MA+DG
Sbjct: 28 EFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDG 87
Query: 110 VAPRAKMNQ 118
VAPRAKMNQ
Sbjct: 88 VAPRAKMNQ 96
Score = 158 (60.7 bits), Expect = 4.9e-30, Sum P(2) = 4.9e-30
Identities = 36/88 (40%), Positives = 50/88 (56%)
Query: 139 RSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSAC 198
R RRFR++KE +KI +K L G LP E + FDSNCITPGT FMA L
Sbjct: 98 RGRRFRSAKEAEDKI-------KKALEKGETLPTE----ARFDSNCITPGTEFMARLHEH 146
Query: 199 LHYYIHDRLNNDPGWKGIKVILSDANVP 226
L Y+++ +++ D W+G+ + S P
Sbjct: 147 LKYFVNMKISTDKSWQGVTIYFSGHETP 174
>UNIPROTKB|E2R2X2 [details] [associations]
symbol:XRN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IEA]
InterPro:IPR004859 InterPro:IPR016494 Pfam:PF03159
PIRSF:PIRSF006743 GO:GO:0003676 GO:GO:0005622 GO:GO:0008409
InterPro:IPR027073 PANTHER:PTHR12341 Ensembl:ENSCAFT00000012512
Uniprot:E2R2X2
Length = 1729
Score = 220 (82.5 bits), Expect = 5.1e-30, Sum P(2) = 5.1e-30
Identities = 41/69 (59%), Positives = 52/69 (75%)
Query: 52 EFDNLYLDMNGIIHPCTHPEDKPAPK--DEDEMMVAIFECIDRLFRIVRPRKLLYMAIDG 109
EFDNLYLDMNGIIH C+HP D +D++ IF ++ LFRI++PRK+ +MA+DG
Sbjct: 28 EFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDG 87
Query: 110 VAPRAKMNQ 118
VAPRAKMNQ
Sbjct: 88 VAPRAKMNQ 96
Score = 158 (60.7 bits), Expect = 5.1e-30, Sum P(2) = 5.1e-30
Identities = 36/88 (40%), Positives = 50/88 (56%)
Query: 139 RSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSAC 198
R RRFR++KE +KI +K L G LP E + FDSNCITPGT FMA L
Sbjct: 98 RGRRFRSAKEAEDKI-------KKALEKGETLPTE----ARFDSNCITPGTEFMARLHEH 146
Query: 199 LHYYIHDRLNNDPGWKGIKVILSDANVP 226
L Y+++ +++ D W+G+ + S P
Sbjct: 147 LKYFVNMKISTDKSWQGVTIYFSGHETP 174
>UNIPROTKB|J9PAD8 [details] [associations]
symbol:XRN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IEA]
InterPro:IPR004859 InterPro:IPR016494 Pfam:PF03159
PIRSF:PIRSF006743 GO:GO:0003676 GO:GO:0005622 GO:GO:0008409
OMA:CKQRKSN InterPro:IPR027073 PANTHER:PTHR12341
GeneTree:ENSGT00670000098080 EMBL:AAEX03013647
Ensembl:ENSCAFT00000047807 Uniprot:J9PAD8
Length = 1730
Score = 220 (82.5 bits), Expect = 5.1e-30, Sum P(2) = 5.1e-30
Identities = 41/69 (59%), Positives = 52/69 (75%)
Query: 52 EFDNLYLDMNGIIHPCTHPEDKPAPK--DEDEMMVAIFECIDRLFRIVRPRKLLYMAIDG 109
EFDNLYLDMNGIIH C+HP D +D++ IF ++ LFRI++PRK+ +MA+DG
Sbjct: 28 EFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDG 87
Query: 110 VAPRAKMNQ 118
VAPRAKMNQ
Sbjct: 88 VAPRAKMNQ 96
Score = 158 (60.7 bits), Expect = 5.1e-30, Sum P(2) = 5.1e-30
Identities = 36/88 (40%), Positives = 50/88 (56%)
Query: 139 RSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSAC 198
R RRFR++KE +KI +K L G LP E + FDSNCITPGT FMA L
Sbjct: 98 RGRRFRSAKEAEDKI-------KKALEKGETLPTE----ARFDSNCITPGTEFMARLHEH 146
Query: 199 LHYYIHDRLNNDPGWKGIKVILSDANVP 226
L Y+++ +++ D W+G+ + S P
Sbjct: 147 LKYFVNMKISTDKSWQGVTIYFSGHETP 174
>SGD|S000003141 [details] [associations]
symbol:XRN1 "Evolutionarily-conserved 5'-3' exonuclease
component of cytoplasmic p" species:4932 "Saccharomyces cerevisiae"
[GO:0070651 "nonfunctional rRNA decay" evidence=IMP] [GO:0004534
"5'-3' exoribonuclease activity" evidence=IMP;IDA] [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IEA;IMP;IDA] [GO:0008409 "5'-3' exonuclease
activity" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0090305 "nucleic acid
phosphodiester bond hydrolysis" evidence=IEA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IEA;TAS]
[GO:0006364 "rRNA processing" evidence=IEA;TAS] [GO:0004536
"deoxyribonuclease activity" evidence=TAS] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005874 "microtubule" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0007089 "traversing start control point
of mitotic cell cycle" evidence=IMP] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000741 "karyogamy" evidence=IEA]
InterPro:IPR004859 InterPro:IPR016494 Pfam:PF03159
PIRSF:PIRSF006743 SGD:S000003141 GO:GO:0005829 GO:GO:0048471
GO:GO:0000184 EMBL:BK006941 GO:GO:0003723 GO:GO:0000932
GO:GO:0000956 GO:GO:0005874 GO:GO:0004536 GO:GO:0006364
GO:GO:0007089 GO:GO:0000741 EMBL:X84705 GO:GO:0070651
Reactome:REACT_83470 eggNOG:COG5049 KO:K12618 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 HOGENOM:HOG000160331
OrthoDB:EOG4PP1R0 EMBL:M90097 EMBL:X54717 EMBL:M58367 EMBL:M36725
EMBL:X61181 EMBL:Z72695 PIR:S13743 RefSeq:NP_011342.1
ProteinModelPortal:P22147 SMR:P22147 DIP:DIP-656N IntAct:P22147
MINT:MINT-414332 STRING:P22147 PaxDb:P22147 PeptideAtlas:P22147
EnsemblFungi:YGL173C GeneID:852702 KEGG:sce:YGL173C CYGD:YGL173c
GeneTree:ENSGT00670000098080 OMA:NIFAYIE Reactome:REACT_78815
NextBio:972050 Genevestigator:P22147 GermOnline:YGL173C
Uniprot:P22147
Length = 1528
Score = 212 (79.7 bits), Expect = 7.9e-30, Sum P(2) = 7.9e-30
Identities = 41/69 (59%), Positives = 49/69 (71%)
Query: 52 EFDNLYLDMNGIIHPCTHPEDKPAPK--DEDEMMVAIFECIDRLFRIVRPRKLLYMAIDG 109
EFDNLYLDMN I+H CTH D K E+E+ I ID LF+ ++P+K+ YMAIDG
Sbjct: 28 EFDNLYLDMNSILHNCTHGNDDDVTKRLTEEEVFAKICTYIDHLFQTIKPKKIFYMAIDG 87
Query: 110 VAPRAKMNQ 118
VAPRAKMNQ
Sbjct: 88 VAPRAKMNQ 96
Score = 163 (62.4 bits), Expect = 7.9e-30, Sum P(2) = 7.9e-30
Identities = 38/88 (43%), Positives = 54/88 (61%)
Query: 139 RSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSAC 198
R+RRFR + + AEK + K + +G +P KG FDSN ITPGT FMA L+
Sbjct: 98 RARRFRTAMD-AEKALK------KAIENGDEIP----KGEPFDSNSITPGTEFMAKLTKN 146
Query: 199 LHYYIHDRLNNDPGWKGIKVILSDANVP 226
L Y+IHD+++ND W+ +++I S VP
Sbjct: 147 LQYFIHDKISNDSKWREVQIIFSGHEVP 174
>UNIPROTKB|Q8IZH2 [details] [associations]
symbol:XRN1 "5'-3' exoribonuclease 1" species:9606 "Homo
sapiens" [GO:0008409 "5'-3' exonuclease activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0071044 "histone mRNA catabolic process"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016075 "rRNA catabolic process" evidence=IMP] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IMP]
[GO:0071028 "nuclear mRNA surveillance" evidence=IMP] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0045111 "intermediate filament cytoskeleton" evidence=IDA]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR004859
InterPro:IPR016494 Pfam:PF03159 PIRSF:PIRSF006743 GO:GO:0005829
GO:GO:0005886 GO:GO:0005794 GO:GO:0010467 GO:GO:0003677
GO:GO:0003723 GO:GO:0045111 GO:GO:0090305 GO:GO:0016075
GO:GO:0071044 GO:GO:0008409 GO:GO:0043928 GO:GO:0071028
ChiTaRS:XRN1 EMBL:AY137776 EMBL:AL133623 EMBL:BX640905
EMBL:CR627396 EMBL:CR749518 EMBL:BC039314 EMBL:BC048104
EMBL:AK096177 IPI:IPI00328115 IPI:IPI00657645 IPI:IPI00657805
PIR:T43461 RefSeq:NP_001036069.1 RefSeq:NP_061874.3
UniGene:Hs.435103 ProteinModelPortal:Q8IZH2 SMR:Q8IZH2
IntAct:Q8IZH2 STRING:Q8IZH2 PhosphoSite:Q8IZH2 DMDM:74714582
PaxDb:Q8IZH2 PRIDE:Q8IZH2 DNASU:54464 Ensembl:ENST00000264951
Ensembl:ENST00000392981 Ensembl:ENST00000463916 GeneID:54464
KEGG:hsa:54464 UCSC:uc003eus.3 UCSC:uc003euu.3 UCSC:uc003euw.3
CTD:54464 GeneCards:GC03M142025 HGNC:HGNC:30654 HPA:HPA035005
HPA:HPA035006 MIM:607994 neXtProt:NX_Q8IZH2 PharmGKB:PA134878471
eggNOG:COG5049 HOVERGEN:HBG094164 InParanoid:Q8IZH2 KO:K12618
OMA:CKQRKSN OrthoDB:EOG49S65H PhylomeDB:Q8IZH2 GenomeRNAi:54464
NextBio:56731 ArrayExpress:Q8IZH2 Bgee:Q8IZH2 CleanEx:HS_XRN1
Genevestigator:Q8IZH2 GermOnline:ENSG00000114127 InterPro:IPR027073
PANTHER:PTHR12341 Uniprot:Q8IZH2
Length = 1706
Score = 220 (82.5 bits), Expect = 8.0e-30, Sum P(2) = 8.0e-30
Identities = 41/69 (59%), Positives = 52/69 (75%)
Query: 52 EFDNLYLDMNGIIHPCTHPEDKPAPK--DEDEMMVAIFECIDRLFRIVRPRKLLYMAIDG 109
EFDNLYLDMNGIIH C+HP D +D++ IF ++ LFRI++PRK+ +MA+DG
Sbjct: 28 EFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDG 87
Query: 110 VAPRAKMNQ 118
VAPRAKMNQ
Sbjct: 88 VAPRAKMNQ 96
Score = 156 (60.0 bits), Expect = 8.0e-30, Sum P(2) = 8.0e-30
Identities = 35/88 (39%), Positives = 50/88 (56%)
Query: 139 RSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSAC 198
R RRFR++KE +KI +K + G LP E + FDSNCITPGT FMA L
Sbjct: 98 RGRRFRSAKEAEDKI-------KKAIEKGETLPTE----ARFDSNCITPGTEFMARLHEH 146
Query: 199 LHYYIHDRLNNDPGWKGIKVILSDANVP 226
L Y+++ +++ D W+G+ + S P
Sbjct: 147 LKYFVNMKISTDKSWQGVTIYFSGHETP 174
>MGI|MGI:891964 [details] [associations]
symbol:Xrn1 "5'-3' exoribonuclease 1" species:10090 "Mus
musculus" [GO:0000723 "telomere maintenance" evidence=NAS]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0004534 "5'-3'
exoribonuclease activity" evidence=TAS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006396
"RNA processing" evidence=TAS] [GO:0007126 "meiosis" evidence=NAS]
[GO:0007569 "cell aging" evidence=NAS] [GO:0008409 "5'-3'
exonuclease activity" evidence=IEA] [GO:0016075 "rRNA catabolic
process" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0071028 "nuclear mRNA surveillance" evidence=ISO]
[GO:0071044 "histone mRNA catabolic process" evidence=ISO]
InterPro:IPR004859 InterPro:IPR016494 Pfam:PF03159
PIRSF:PIRSF006743 MGI:MGI:891964 GO:GO:0007126 GO:GO:0003677
GO:GO:0003723 GO:GO:0006396 GO:GO:0000932 GO:GO:0000723
GO:GO:0071044 GO:GO:0007569 CTD:54464 eggNOG:COG5049
HOVERGEN:HBG094164 KO:K12618 OrthoDB:EOG49S65H InterPro:IPR027073
PANTHER:PTHR12341 EMBL:D88026 EMBL:X91617 EMBL:AK142311
EMBL:AK162848 EMBL:AK169840 IPI:IPI00129132 IPI:IPI00668938
IPI:IPI00677614 PIR:T30174 PIR:T30175 PIR:T30244 RefSeq:NP_036046.2
UniGene:Mm.291179 ProteinModelPortal:P97789 SMR:P97789
STRING:P97789 PhosphoSite:P97789 PaxDb:P97789 PRIDE:P97789
GeneID:24127 KEGG:mmu:24127 UCSC:uc009rbw.1 UCSC:uc009rbx.1
HOGENOM:HOG000154879 InParanoid:P97789 NextBio:304159
CleanEx:MM_XRN1 Genevestigator:P97789 GermOnline:ENSMUSG00000032410
GO:GO:0004534 Uniprot:P97789
Length = 1719
Score = 220 (82.5 bits), Expect = 8.1e-30, Sum P(2) = 8.1e-30
Identities = 41/69 (59%), Positives = 52/69 (75%)
Query: 52 EFDNLYLDMNGIIHPCTHPEDKPAPK--DEDEMMVAIFECIDRLFRIVRPRKLLYMAIDG 109
EFDNLYLDMNGIIH C+HP D +D++ IF ++ LFRI++PRK+ +MA+DG
Sbjct: 28 EFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDG 87
Query: 110 VAPRAKMNQ 118
VAPRAKMNQ
Sbjct: 88 VAPRAKMNQ 96
Score = 156 (60.0 bits), Expect = 8.1e-30, Sum P(2) = 8.1e-30
Identities = 35/88 (39%), Positives = 50/88 (56%)
Query: 139 RSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSAC 198
R RRFR++KE +KI +K + G LP E + FDSNCITPGT FMA L
Sbjct: 98 RGRRFRSAKEAEDKI-------KKAIEKGETLPTE----ARFDSNCITPGTEFMARLHEH 146
Query: 199 LHYYIHDRLNNDPGWKGIKVILSDANVP 226
L Y+++ +++ D W+G+ + S P
Sbjct: 147 LKYFVNMKISTDKSWQGVTIYFSGHETP 174
>RGD|1309713 [details] [associations]
symbol:Xrn1 "5'-3' exoribonuclease 1" species:10116 "Rattus
norvegicus" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA;ISO] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005794
"Golgi apparatus" evidence=IEA;ISO] [GO:0005886 "plasma membrane"
evidence=IEA;ISO] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0016075 "rRNA catabolic process"
evidence=IEA;ISO] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA;ISO] [GO:0071028 "nuclear mRNA surveillance"
evidence=IEA;ISO] [GO:0071044 "histone mRNA catabolic process"
evidence=IEA;ISO] InterPro:IPR004859 InterPro:IPR016494
Pfam:PF03159 PIRSF:PIRSF006743 RGD:1309713 GO:GO:0005886
GO:GO:0005794 GO:GO:0003676 GO:GO:0045111 GO:GO:0016075
GO:GO:0071044 GO:GO:0008409 GO:GO:0071028 OrthoDB:EOG49S65H
InterPro:IPR027073 PANTHER:PTHR12341 GeneTree:ENSGT00670000098080
IPI:IPI00373532 Ensembl:ENSRNOT00000014481 UCSC:RGD:1309713
Uniprot:D4ABN8
Length = 1723
Score = 220 (82.5 bits), Expect = 8.2e-30, Sum P(2) = 8.2e-30
Identities = 41/69 (59%), Positives = 52/69 (75%)
Query: 52 EFDNLYLDMNGIIHPCTHPEDKPAPK--DEDEMMVAIFECIDRLFRIVRPRKLLYMAIDG 109
EFDNLYLDMNGIIH C+HP D +D++ IF ++ LFRI++PRK+ +MA+DG
Sbjct: 28 EFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDG 87
Query: 110 VAPRAKMNQ 118
VAPRAKMNQ
Sbjct: 88 VAPRAKMNQ 96
Score = 156 (60.0 bits), Expect = 8.2e-30, Sum P(2) = 8.2e-30
Identities = 35/88 (39%), Positives = 50/88 (56%)
Query: 139 RSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSAC 198
R RRFR++KE +KI +K + G LP E + FDSNCITPGT FMA L
Sbjct: 98 RGRRFRSAKEAEDKI-------KKAIEKGETLPTE----ARFDSNCITPGTEFMARLHEH 146
Query: 199 LHYYIHDRLNNDPGWKGIKVILSDANVP 226
L Y+++ +++ D W+G+ + S P
Sbjct: 147 LKYFVNMKISTDKSWQGVTIYFSGHETP 174
>UNIPROTKB|F1SKG4 [details] [associations]
symbol:XRN1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071044 "histone mRNA catabolic process" evidence=IEA]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0005886 "plasma
membrane" evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA]
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR004859
InterPro:IPR016494 Pfam:PF03159 PIRSF:PIRSF006743 GO:GO:0005886
GO:GO:0005794 GO:GO:0003676 GO:GO:0045111 GO:GO:0016075
GO:GO:0071044 GO:GO:0008409 GO:GO:0071028 OMA:CKQRKSN
InterPro:IPR027073 PANTHER:PTHR12341 GeneTree:ENSGT00670000098080
EMBL:CU914452 EMBL:CU467674 Ensembl:ENSSSCT00000012784
ArrayExpress:F1SKG4 Uniprot:F1SKG4
Length = 1725
Score = 220 (82.5 bits), Expect = 8.2e-30, Sum P(2) = 8.2e-30
Identities = 41/69 (59%), Positives = 52/69 (75%)
Query: 52 EFDNLYLDMNGIIHPCTHPEDKPAPK--DEDEMMVAIFECIDRLFRIVRPRKLLYMAIDG 109
EFDNLYLDMNGIIH C+HP D +D++ IF ++ LFRI++PRK+ +MA+DG
Sbjct: 28 EFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDG 87
Query: 110 VAPRAKMNQ 118
VAPRAKMNQ
Sbjct: 88 VAPRAKMNQ 96
Score = 156 (60.0 bits), Expect = 8.2e-30, Sum P(2) = 8.2e-30
Identities = 35/88 (39%), Positives = 50/88 (56%)
Query: 139 RSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSAC 198
R RRFR++KE +KI +K + G LP E + FDSNCITPGT FMA L
Sbjct: 98 RGRRFRSAKEAEDKI-------KKAIEKGETLPTE----ARFDSNCITPGTEFMARLHEH 146
Query: 199 LHYYIHDRLNNDPGWKGIKVILSDANVP 226
L Y+++ +++ D W+G+ + S P
Sbjct: 147 LKYFVNMKISTDKSWQGVTIYFSGHETP 174
>WB|WBGene00012730 [details] [associations]
symbol:xrn-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0016246
"RNA interference" evidence=IMP] InterPro:IPR004859
InterPro:IPR016494 Pfam:PF03159 PIRSF:PIRSF006743 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0016246 GO:GO:0003676
GO:GO:0005622 GO:GO:0008409 EMBL:AL032634 eggNOG:COG5049 KO:K12618
InterPro:IPR027073 PANTHER:PTHR12341 GeneTree:ENSGT00670000098080
OMA:NIFAYIE RefSeq:NP_496945.3 UniGene:Cel.6888
ProteinModelPortal:Q9BHK7 SMR:Q9BHK7 STRING:Q9BHK7 PaxDb:Q9BHK7
EnsemblMetazoa:Y39G8C.1 GeneID:175059 KEGG:cel:CELE_Y39G8C.1
UCSC:Y39G8C.1 CTD:175059 WormBase:Y39G8C.1 HOGENOM:HOG000021950
InParanoid:Q9BHK7 NextBio:886590 Uniprot:Q9BHK7
Length = 1591
Score = 223 (83.6 bits), Expect = 4.0e-28, Sum P(2) = 4.0e-28
Identities = 42/69 (60%), Positives = 52/69 (75%)
Query: 52 EFDNLYLDMNGIIHPCTHPEDKPAPK--DEDEMMVAIFECIDRLFRIVRPRKLLYMAIDG 109
EFDNLYLDMNGIIH C+HP D EDE+ V IF I+ L+ ++RP+K+ +MA+DG
Sbjct: 28 EFDNLYLDMNGIIHNCSHPNDDDVTFRITEDEIFVNIFAYIENLYNLIRPQKVFFMAVDG 87
Query: 110 VAPRAKMNQ 118
VAPRAKMNQ
Sbjct: 88 VAPRAKMNQ 96
Score = 136 (52.9 bits), Expect = 4.0e-28, Sum P(2) = 4.0e-28
Identities = 36/88 (40%), Positives = 49/88 (55%)
Query: 139 RSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSAC 198
R+RRF +++ ++A K L +G I+P E + FDSNCITPGT FM L
Sbjct: 98 RARRFMSARTAHTQLA-------KALENGEIMPSE----ARFDSNCITPGTYFMTRLHQK 146
Query: 199 LHYYIHDRLNNDPGWKGIKVILSDANVP 226
L +I + D W+G K+ILS NVP
Sbjct: 147 LDDWIKTKSATDSRWQGRKIILSGHNVP 174
>FB|FBgn0020261 [details] [associations]
symbol:pcm "pacman" species:7227 "Drosophila melanogaster"
[GO:0004534 "5'-3' exoribonuclease activity" evidence=ISS;IDA]
[GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0007369
"gastrulation" evidence=NAS] [GO:0006401 "RNA catabolic process"
evidence=NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0034428 "nuclear-transcribed mRNA
catabolic process, exonucleolytic, 5'-3'" evidence=IMP] [GO:0042060
"wound healing" evidence=IMP] [GO:0007476 "imaginal disc-derived
wing morphogenesis" evidence=IMP] [GO:0046529 "imaginal disc
fusion, thorax closure" evidence=IMP] [GO:0007391 "dorsal closure"
evidence=IMP] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0010603 "regulation of cytoplasmic mRNA processing body
assembly" evidence=IMP] InterPro:IPR004859 InterPro:IPR016494
Pfam:PF03159 PIRSF:PIRSF006743 GO:GO:0016246 GO:GO:0000184
GO:GO:0007391 EMBL:AE014298 GO:GO:0007283 GO:GO:0003676
GO:GO:0042060 GO:GO:0000932 GO:GO:0007476 GO:GO:0008409
GO:GO:0046529 KO:K12618 InterPro:IPR027073 PANTHER:PTHR12341
GeneTree:ENSGT00670000098080 RefSeq:NP_001162796.1 UniGene:Dm.7395
PDB:2LYD PDB:2Y35 PDBsum:2LYD PDBsum:2Y35
EnsemblMetazoa:FBtr0302082 GeneID:32935 KEGG:dme:Dmel_CG3291
CTD:32935 FlyBase:FBgn0020261 OMA:FVPIQAY PhylomeDB:E1JJR3
GenomeRNAi:32935 NextBio:781106 Bgee:E1JJR3 GO:GO:0034428
GO:GO:0010603 Uniprot:E1JJR3
Length = 1613
Score = 212 (79.7 bits), Expect = 1.6e-26, Sum P(2) = 1.6e-26
Identities = 36/69 (52%), Positives = 54/69 (78%)
Query: 52 EFDNLYLDMNGIIHPCTHPEDKPAP--KDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDG 109
EFDNLYLDMNGI+H C+HP+D +E+++ IF +D+LF +++P++L ++++DG
Sbjct: 28 EFDNLYLDMNGIVHNCSHPDDNNIHFHLEEEQIFQEIFNYVDKLFYLIKPQRLFFLSVDG 87
Query: 110 VAPRAKMNQ 118
VAPRAKMNQ
Sbjct: 88 VAPRAKMNQ 96
Score = 132 (51.5 bits), Expect = 1.6e-26, Sum P(2) = 1.6e-26
Identities = 35/88 (39%), Positives = 49/88 (55%)
Query: 139 RSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSAC 198
RSRRFR ++E ++ A+ A+ R +L E E+ FDSNCITPGT FM L
Sbjct: 98 RSRRFRTAREAEQQEAKAAQ-RGELR--------EHER---FDSNCITPGTEFMVRLQEG 145
Query: 199 LHYYIHDRLNNDPGWKGIKVILSDANVP 226
L ++ +++ DP W+ VILS P
Sbjct: 146 LRAFLKTKISTDPLWQRCTVILSGQEAP 173
>DICTYBASE|DDB_G0276137 [details] [associations]
symbol:xrn1 "5'-3' exoribonuclease" species:44689
"Dictyostelium discoideum" [GO:0005622 "intracellular"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR004859 Pfam:PF03159
dictyBase:DDB_G0276137 EMBL:AAFI02000014 GenomeReviews:CM000151_GR
GO:GO:0003676 GO:GO:0005622 GO:GO:0004527 eggNOG:COG5049 KO:K12618
InterPro:IPR027073 PANTHER:PTHR12341 RefSeq:XP_643245.1
ProteinModelPortal:Q75JF5 STRING:Q75JF5 EnsemblProtists:DDB0237529
GeneID:8620288 KEGG:ddi:DDB_G0276137 InParanoid:Q75JF5 OMA:GMPYGAM
Uniprot:Q75JF5
Length = 1749
Score = 196 (74.1 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 43/83 (51%), Positives = 55/83 (66%)
Query: 37 QKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHP-EDKPAPKDEDEMMVAIFECIDRLFR 95
QKI DS+ P E+DNLYLDMNGIIH C+ + E+E++ + +DRLF
Sbjct: 19 QKI-LDSNPP-----EYDNLYLDMNGIIHACSQEFANSLIEFSEEELIRQVCNYVDRLFH 72
Query: 96 IVRPRKLLYMAIDGVAPRAKMNQ 118
+RP KL YMAIDGVAPR+K+NQ
Sbjct: 73 TIRPTKLFYMAIDGVAPRSKINQ 95
Score = 103 (41.3 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 158 RIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDPGWKGIK 217
++++KL+++G +P F+ ITPGT FM LS + +YI +++ D W+ ++
Sbjct: 109 KLKQKLISEGKPVPEVI-----FNRTAITPGTQFMYNLSESIQFYIKKKISEDLSWREVR 163
Query: 218 VILSDANVP 226
VI S P
Sbjct: 164 VIFSGPENP 172
>UNIPROTKB|F8WDA0 [details] [associations]
symbol:XRN1 "5'-3' exoribonuclease 1" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR004859 Pfam:PF03159
GO:GO:0003676 GO:GO:0005622 GO:GO:0004527 ChiTaRS:XRN1
HGNC:HGNC:30654 InterPro:IPR027073 PANTHER:PTHR12341 EMBL:AC023508
EMBL:AC109992 IPI:IPI00792899 ProteinModelPortal:F8WDA0 SMR:F8WDA0
Ensembl:ENST00000486211 ArrayExpress:F8WDA0 Bgee:F8WDA0
Uniprot:F8WDA0
Length = 107
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 41/69 (59%), Positives = 52/69 (75%)
Query: 52 EFDNLYLDMNGIIHPCTHPEDKPAPK--DEDEMMVAIFECIDRLFRIVRPRKLLYMAIDG 109
EFDNLYLDMNGIIH C+HP D +D++ IF ++ LFRI++PRK+ +MA+DG
Sbjct: 28 EFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDG 87
Query: 110 VAPRAKMNQ 118
VAPRAKMNQ
Sbjct: 88 VAPRAKMNQ 96
>GENEDB_PFALCIPARUM|PF11_0074 [details] [associations]
symbol:PF11_0074 "exonuclease, putative"
species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR004859 InterPro:IPR006141 Pfam:PF03159
PROSITE:PS50817 GO:GO:0003676 GO:GO:0005622 GO:GO:0004527
EMBL:AE014186 GO:GO:0016539 KO:K12618 InterPro:IPR027073
PANTHER:PTHR12341 RefSeq:XP_001347750.2 ProteinModelPortal:Q8IIU0
EnsemblProtists:PF11_0074:mRNA GeneID:810626 KEGG:pfa:PF11_0074
EuPathDB:PlasmoDB:PF3D7_1106300 HOGENOM:HOG000282212 Uniprot:Q8IIU0
Length = 734
Score = 179 (68.1 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 32/73 (43%), Positives = 47/73 (64%)
Query: 47 NPNGMEFDNLYLDMNGIIHPCTHPEDKPAP-KDEDEMMVAIFECIDRLFRIVRPRKLLYM 105
N D Y+DMNG+IH CTH + P DE E+ I + + LF +++P+KL+Y+
Sbjct: 68 NEKQKSVDIFYIDMNGVIHHCTHANKEKLPIYDEHELFSNILQYLKNLFYLIKPKKLIYI 127
Query: 106 AIDGVAPRAKMNQ 118
+DGV+P+AKMNQ
Sbjct: 128 GVDGVSPKAKMNQ 140
Score = 51 (23.0 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 180 FDSNCITPGTPFMACLSACLH 200
F+ NCIT GT FM ++ L+
Sbjct: 162 FNPNCITTGTDFMYKINLSLN 182
>UNIPROTKB|Q8IIU0 [details] [associations]
symbol:PF11_0074 "Exonuclease, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0020011 "apicoplast" evidence=RCA]
InterPro:IPR004859 InterPro:IPR006141 Pfam:PF03159 PROSITE:PS50817
GO:GO:0003676 GO:GO:0005622 GO:GO:0004527 EMBL:AE014186
GO:GO:0016539 KO:K12618 InterPro:IPR027073 PANTHER:PTHR12341
RefSeq:XP_001347750.2 ProteinModelPortal:Q8IIU0
EnsemblProtists:PF11_0074:mRNA GeneID:810626 KEGG:pfa:PF11_0074
EuPathDB:PlasmoDB:PF3D7_1106300 HOGENOM:HOG000282212 Uniprot:Q8IIU0
Length = 734
Score = 179 (68.1 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 32/73 (43%), Positives = 47/73 (64%)
Query: 47 NPNGMEFDNLYLDMNGIIHPCTHPEDKPAP-KDEDEMMVAIFECIDRLFRIVRPRKLLYM 105
N D Y+DMNG+IH CTH + P DE E+ I + + LF +++P+KL+Y+
Sbjct: 68 NEKQKSVDIFYIDMNGVIHHCTHANKEKLPIYDEHELFSNILQYLKNLFYLIKPKKLIYI 127
Query: 106 AIDGVAPRAKMNQ 118
+DGV+P+AKMNQ
Sbjct: 128 GVDGVSPKAKMNQ 140
Score = 51 (23.0 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 180 FDSNCITPGTPFMACLSACLH 200
F+ NCIT GT FM ++ L+
Sbjct: 162 FNPNCITTGTDFMYKINLSLN 182
>DICTYBASE|DDB_G0289921 [details] [associations]
symbol:DDB_G0289921 species:44689 "Dictyostelium
discoideum" [GO:0005622 "intracellular" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004859
InterPro:IPR012677 Pfam:PF00076 Pfam:PF03159 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0289921 Pfam:PF06201 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622 EMBL:AAFI02000149
GO:GO:0004527 InterPro:IPR008979 SUPFAM:SSF49785
Gene3D:2.60.120.470 InterPro:IPR010400 PROSITE:PS51532
eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341 KO:K12619
RefSeq:XP_635977.1 ProteinModelPortal:Q54GU2
EnsemblProtists:DDB0188640 GeneID:8627392 KEGG:ddi:DDB_G0289921
InParanoid:Q54GU2 OMA:MDADLIF Uniprot:Q54GU2
Length = 1235
Score = 90 (36.7 bits), Expect = 5.2e-08, Sum P(3) = 5.2e-08
Identities = 27/88 (30%), Positives = 47/88 (53%)
Query: 139 RSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSAC 198
R RRF++SKET + I + + + K + I+ ++ FDSN I+P T F+ +
Sbjct: 127 RKRRFKSSKETVDVIIKQLKSKSKPITRDSII---EQFSLIFDSNSISPATEFIEKVDDW 183
Query: 199 LHYYIHDRLNNDPGWKGIKVILSDANVP 226
+ Y +L+ + + +ILSD+ VP
Sbjct: 184 IKDYCK-QLSLKR--QNLSIILSDSTVP 208
Score = 80 (33.2 bits), Expect = 5.2e-08, Sum P(3) = 5.2e-08
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 79 EDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAK 115
++++ IF +D++ V P LLY+ +DGV PRAK
Sbjct: 86 DEKLKERIFYRLDQMVNNVNPSSLLYIGVDGVPPRAK 122
Score = 72 (30.4 bits), Expect = 5.2e-08, Sum P(3) = 5.2e-08
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 47 NPNG-MEFDNLYLDMNGIIHPCTHPEDKP 74
N NG ++F+NLY+DMNG++H + P
Sbjct: 21 NLNGEIKFNNLYIDMNGVVHNAIKLDHSP 49
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.135 0.414 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 226 226 0.00078 113 3 11 22 0.41 33
32 0.41 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 42
No. of states in DFA: 612 (65 KB)
Total size of DFA: 188 KB (2107 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.62u 0.08s 20.70t Elapsed: 00:00:03
Total cpu time: 20.63u 0.08s 20.71t Elapsed: 00:00:03
Start: Thu Aug 15 11:36:29 2013 End: Thu Aug 15 11:36:32 2013