RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6081
         (226 letters)



>d1g8wa_ b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also arcelin
           {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
          Length = 233

 Score = 25.4 bits (55), Expect = 4.9
 Identities = 7/34 (20%), Positives = 13/34 (38%)

Query: 39  IPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPED 72
           + FD+           ++ +D+N I    T   D
Sbjct: 121 VEFDTLYNKDWDPTERHIGIDVNSIRSIKTTRWD 154


>d1l4sa_ d.204.1.1 (A:) Ribosome binding protein Y (YfiA homologue)
           {Escherichia coli [TaxId: 562]}
          Length = 112

 Score = 24.1 bits (52), Expect = 9.8
 Identities = 7/25 (28%), Positives = 13/25 (52%)

Query: 77  KDEDEMMVAIFECIDRLFRIVRPRK 101
              ++M  AI E I++L R +   +
Sbjct: 64  GKHEDMYTAINELINKLERQLNKLQ 88


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.135    0.414 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 873,422
Number of extensions: 41071
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 5
Length of query: 226
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 144
Effective length of database: 1,281,736
Effective search space: 184569984
Effective search space used: 184569984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.0 bits)