Query psy6082
Match_columns 275
No_of_seqs 341 out of 1195
Neff 9.5
Searched_HMMs 46136
Date Fri Aug 16 17:11:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6082.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6082hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0058|consensus 100.0 1.7E-28 3.7E-33 223.2 28.4 234 24-270 184-417 (716)
2 PF00664 ABC_membrane: ABC tra 100.0 9.6E-28 2.1E-32 202.3 29.7 227 34-273 47-274 (275)
3 COG2274 SunT ABC-type bacterio 100.0 7.2E-26 1.6E-30 212.3 29.0 236 22-271 188-423 (709)
4 KOG0057|consensus 99.9 1.1E-24 2.3E-29 192.6 24.3 250 12-273 58-307 (591)
5 TIGR01846 type_I_sec_HlyB type 99.9 1.2E-23 2.5E-28 200.9 29.1 229 29-271 180-408 (694)
6 TIGR02868 CydC thiol reductant 99.9 2.1E-23 4.5E-28 193.7 28.6 221 37-270 62-283 (529)
7 TIGR01193 bacteriocin_ABC ABC- 99.9 2.5E-23 5.4E-28 199.2 29.9 226 31-270 199-424 (708)
8 TIGR02857 CydD thiol reductant 99.9 3.4E-23 7.3E-28 192.2 29.4 228 30-270 46-273 (529)
9 PRK10789 putative multidrug tr 99.9 4.9E-23 1.1E-27 192.5 30.2 227 34-272 42-268 (569)
10 TIGR00958 3a01208 Conjugate Tr 99.9 3.5E-23 7.7E-28 197.7 29.8 225 33-270 206-430 (711)
11 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 4.4E-23 9.6E-28 196.8 29.9 230 28-271 176-405 (686)
12 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 4.7E-23 1E-27 197.4 29.8 229 30-272 196-424 (710)
13 TIGR01192 chvA glucan exporter 99.9 6.7E-23 1.5E-27 191.9 29.5 221 38-271 66-286 (585)
14 PRK11160 cysteine/glutathione 99.9 5.3E-23 1.2E-27 192.3 28.7 219 34-266 66-285 (574)
15 TIGR02203 MsbA_lipidA lipid A 99.9 7.6E-23 1.6E-27 191.6 29.8 230 31-273 57-286 (571)
16 TIGR03375 type_I_sec_LssB type 99.9 5.5E-23 1.2E-27 196.4 28.5 228 30-272 189-416 (694)
17 PRK11174 cysteine/glutathione 99.9 1.4E-22 3E-27 190.4 28.5 215 32-260 67-281 (588)
18 PRK11176 lipid transporter ATP 99.9 2.5E-22 5.4E-27 188.5 29.9 221 34-267 71-291 (582)
19 TIGR02204 MsbA_rel ABC transpo 99.9 3.5E-21 7.5E-26 180.6 30.5 221 34-267 64-284 (576)
20 KOG0055|consensus 99.9 2.6E-21 5.6E-26 186.0 28.7 219 30-262 709-929 (1228)
21 PTZ00265 multidrug resistance 99.9 2.8E-21 6E-26 195.3 29.3 219 32-263 101-327 (1466)
22 PRK13657 cyclic beta-1,2-gluca 99.9 7.2E-21 1.6E-25 178.7 29.4 216 39-267 67-282 (588)
23 TIGR01194 cyc_pep_trnsptr cycl 99.9 9.8E-21 2.1E-25 176.4 28.2 217 39-272 64-282 (555)
24 PRK10790 putative multidrug tr 99.9 1.9E-20 4.1E-25 176.1 29.5 227 32-272 69-296 (592)
25 PTZ00265 multidrug resistance 99.9 3E-20 6.6E-25 187.9 30.0 217 32-264 870-1106(1466)
26 COG1132 MdlB ABC-type multidru 99.9 7.5E-20 1.6E-24 171.2 30.1 224 36-272 60-283 (567)
27 TIGR01842 type_I_sec_PrtD type 99.9 4.8E-20 1E-24 171.6 28.4 221 30-269 48-269 (544)
28 COG5265 ATM1 ABC-type transpor 99.9 4.5E-21 9.8E-26 164.9 18.4 216 48-275 2-217 (497)
29 COG4988 CydD ABC-type transpor 99.9 9.7E-19 2.1E-23 156.9 29.3 222 26-260 38-260 (559)
30 KOG0056|consensus 99.9 2.9E-21 6.3E-26 168.7 10.2 218 41-271 272-489 (790)
31 TIGR00954 3a01203 Peroxysomal 99.8 5.4E-19 1.2E-23 167.3 24.5 222 27-262 138-367 (659)
32 KOG0055|consensus 99.8 8.7E-19 1.9E-23 168.7 24.4 219 28-259 71-289 (1228)
33 TIGR00957 MRP_assoc_pro multi 99.8 2.4E-18 5.1E-23 175.6 28.2 222 33-270 1010-1232(1522)
34 PTZ00243 ABC transporter; Prov 99.8 1E-17 2.3E-22 170.8 27.8 213 42-267 1012-1226(1560)
35 PRK10522 multidrug transporter 99.8 8.2E-17 1.8E-21 150.0 28.4 177 42-233 62-241 (547)
36 KOG0054|consensus 99.8 8.5E-17 1.8E-21 158.2 24.4 219 27-259 857-1075(1381)
37 COG4987 CydC ABC-type transpor 99.8 1.8E-15 3.8E-20 134.4 28.7 213 31-256 61-274 (573)
38 TIGR01271 CFTR_protein cystic 99.8 4.8E-16 1E-20 158.5 28.6 185 40-237 937-1121(1490)
39 PLN03130 ABC transporter C fam 99.7 9.5E-16 2.1E-20 156.9 27.6 174 32-218 957-1130(1622)
40 PLN03232 ABC transporter C fam 99.7 4.4E-15 9.5E-20 151.7 28.1 212 36-266 349-563 (1495)
41 PLN03232 ABC transporter C fam 99.7 3E-15 6.5E-20 152.9 26.0 178 30-220 952-1129(1495)
42 PTZ00243 ABC transporter; Prov 99.7 8.2E-15 1.8E-19 149.8 28.8 223 24-262 281-505 (1560)
43 PLN03130 ABC transporter C fam 99.7 8.8E-15 1.9E-19 149.9 28.3 196 52-263 365-560 (1622)
44 TIGR01271 CFTR_protein cystic 99.7 5.9E-14 1.3E-18 143.4 29.0 216 27-259 121-336 (1490)
45 TIGR00957 MRP_assoc_pro multi 99.7 9E-14 1.9E-18 142.4 28.4 215 29-259 359-575 (1522)
46 COG4618 ArpD ABC-type protease 99.6 1.1E-13 2.3E-18 122.4 18.7 220 28-264 63-282 (580)
47 KOG0054|consensus 99.6 8.8E-13 1.9E-17 130.4 26.6 245 13-272 227-475 (1381)
48 COG4615 PvdE ABC-type sideroph 99.5 1.3E-11 2.7E-16 106.4 21.5 184 45-242 65-250 (546)
49 PF06472 ABC_membrane_2: ABC t 99.2 4.2E-08 9E-13 84.0 26.6 202 33-248 71-278 (281)
50 COG4178 ABC-type uncharacteriz 99.2 4.4E-08 9.6E-13 90.2 25.6 232 41-273 99-342 (604)
51 PRK11098 microcin B17 transpor 99.0 5.9E-07 1.3E-11 79.9 26.2 201 36-264 146-359 (409)
52 PRK12369 putative transporter; 99.0 7E-07 1.5E-11 77.6 25.4 225 34-272 69-297 (326)
53 PF13748 ABC_membrane_3: ABC t 98.5 9.8E-05 2.1E-09 60.2 21.6 167 33-234 50-216 (237)
54 PF05992 SbmA_BacA: SbmA/BacA- 98.2 0.003 6.4E-08 53.9 24.2 207 43-264 71-277 (315)
55 KOG0060|consensus 98.0 0.00025 5.4E-09 64.8 13.6 197 43-253 137-338 (659)
56 PF00664 ABC_membrane: ABC tra 97.3 0.066 1.4E-06 44.3 21.9 187 29-233 46-237 (275)
57 PRK10733 hflB ATP-dependent me 96.8 5.2E-05 1.1E-09 72.2 -5.0 115 144-258 7-126 (644)
58 KOG0064|consensus 96.8 0.4 8.7E-06 44.2 19.2 183 42-234 171-357 (728)
59 TIGR00954 3a01203 Peroxysomal 96.4 1 2.2E-05 43.5 22.9 138 31-185 138-279 (659)
60 TIGR00958 3a01208 Conjugate Tr 96.3 1.1 2.5E-05 43.6 22.4 159 25-201 202-364 (711)
61 TIGR02857 CydD thiol reductant 96.2 1.1 2.4E-05 42.0 22.4 65 23-87 43-111 (529)
62 TIGR03375 type_I_sec_LssB type 95.6 2.3 5.1E-05 41.3 22.8 187 23-228 186-376 (694)
63 COG1133 SbmA ABC-type long-cha 95.4 1.5 3.3E-05 37.4 21.9 230 19-264 125-355 (405)
64 TIGR02868 CydC thiol reductant 95.1 2.9 6.3E-05 39.1 22.3 53 34-86 63-119 (529)
65 PRK11176 lipid transporter ATP 95.1 3.2 6.9E-05 39.4 23.2 154 32-203 73-230 (582)
66 TIGR01842 type_I_sec_PrtD type 95.0 3.1 6.8E-05 39.1 23.4 51 22-72 44-94 (544)
67 TIGR01846 type_I_sec_HlyB type 94.9 4.1 9E-05 39.6 23.0 188 23-229 178-370 (694)
68 PRK13657 cyclic beta-1,2-gluca 94.7 4.1 8.9E-05 38.7 23.5 47 40-86 72-122 (588)
69 TIGR01192 chvA glucan exporter 94.6 4.3 9.4E-05 38.6 23.0 13 45-57 77-89 (585)
70 PRK11160 cysteine/glutathione 94.5 4.4 9.6E-05 38.4 21.9 55 32-86 68-126 (574)
71 PF06472 ABC_membrane_2: ABC t 94.4 3 6.4E-05 35.7 21.9 217 9-241 49-274 (281)
72 PRK11174 cysteine/glutathione 93.9 6.1 0.00013 37.5 24.7 65 23-87 62-130 (588)
73 TIGR01193 bacteriocin_ABC ABC- 93.6 7.7 0.00017 37.8 26.0 174 26-218 198-376 (708)
74 TIGR03797 NHPM_micro_ABC2 NHPM 93.5 7.9 0.00017 37.6 25.1 189 23-230 175-368 (686)
75 PRK10789 putative multidrug tr 93.3 7.5 0.00016 36.8 22.4 60 28-87 40-103 (569)
76 TIGR03796 NHPM_micro_ABC1 NHPM 93.0 9.6 0.00021 37.2 26.4 189 24-231 194-387 (710)
77 TIGR02203 MsbA_lipidA lipid A 92.9 8.7 0.00019 36.3 26.0 189 24-230 54-247 (571)
78 TIGR02204 MsbA_rel ABC transpo 91.5 13 0.00028 35.2 22.5 150 32-199 66-219 (576)
79 PRK10522 multidrug transporter 89.9 18 0.00038 34.2 23.3 48 40-87 64-115 (547)
80 COG2274 SunT ABC-type bacterio 88.5 26 0.00057 34.3 24.0 202 17-238 187-394 (709)
81 TIGR01194 cyc_pep_trnsptr cycl 83.3 41 0.0009 31.8 23.8 50 38-87 67-120 (555)
82 COG4988 CydD ABC-type transpor 75.7 73 0.0016 30.1 24.6 30 42-71 50-79 (559)
83 COG1132 MdlB ABC-type multidru 73.2 85 0.0018 29.7 23.0 61 22-82 50-114 (567)
84 PRK11677 hypothetical protein; 70.9 43 0.00092 25.2 9.7 45 141-185 3-51 (134)
85 KOG0058|consensus 67.4 1.3E+02 0.0028 29.4 22.7 51 20-70 184-234 (716)
86 COG3105 Uncharacterized protei 66.1 52 0.0011 24.5 9.9 75 140-216 7-81 (138)
87 PRK10790 putative multidrug tr 64.6 1.3E+02 0.0029 28.6 24.6 53 30-82 71-127 (592)
88 PF12273 RCR: Chitin synthesis 61.7 10 0.00022 28.3 3.2 26 141-166 2-27 (130)
89 PF03954 Lectin_N: Hepatic lec 57.5 77 0.0017 23.9 7.0 60 140-199 32-91 (138)
90 COG3887 Predicted signaling pr 57.5 89 0.0019 29.7 8.9 80 137-217 29-111 (655)
91 PF04246 RseC_MucC: Positive r 52.5 75 0.0016 23.7 6.7 72 81-166 51-122 (135)
92 PF01956 DUF106: Integral memb 52.5 1.1E+02 0.0024 23.8 11.0 18 203-220 68-85 (168)
93 PF13314 DUF4083: Domain of un 43.5 69 0.0015 20.2 4.1 6 161-166 26-31 (58)
94 PHA03231 glycoprotein BALF4; P 43.1 75 0.0016 31.6 6.4 66 93-172 669-734 (829)
95 PRK04125 murein hydrolase regu 37.7 1.8E+02 0.004 22.1 7.1 52 103-167 67-118 (141)
96 PRK06531 yajC preprotein trans 35.8 58 0.0013 23.7 3.5 15 162-176 20-34 (113)
97 PF14584 DUF4446: Protein of u 35.3 2.1E+02 0.0045 22.0 8.6 22 155-176 15-36 (151)
98 PF13829 DUF4191: Domain of un 34.7 2.3E+02 0.0049 23.5 7.1 49 140-189 51-99 (224)
99 PRK09609 hypothetical protein; 34.6 3.1E+02 0.0068 23.9 15.8 83 138-222 77-159 (312)
100 COG3086 RseC Positive regulato 32.3 2.3E+02 0.005 21.7 7.4 71 81-167 58-130 (150)
101 PF06305 DUF1049: Protein of u 30.4 1.5E+02 0.0032 18.8 6.8 14 141-154 18-31 (68)
102 PF04145 Ctr: Ctr copper trans 30.4 79 0.0017 23.6 3.7 20 104-123 104-123 (144)
103 PF14316 DUF4381: Domain of un 30.1 1.8E+02 0.004 21.9 5.7 7 141-147 23-29 (146)
104 PRK01821 hypothetical protein; 29.2 2.3E+02 0.0049 21.3 5.9 53 103-168 69-121 (133)
105 PRK05886 yajC preprotein trans 28.5 1.7E+02 0.0037 21.2 4.9 12 162-173 22-33 (109)
106 COG4477 EzrA Negative regulato 28.2 3.1E+02 0.0067 25.9 7.5 58 155-212 16-74 (570)
107 PRK09458 pspB phage shock prot 28.1 1.4E+02 0.0031 20.0 4.0 14 142-155 9-22 (75)
108 KOG3386|consensus 27.2 3E+02 0.0064 21.3 9.4 40 102-155 96-135 (155)
109 PRK02654 putative inner membra 26.3 4.7E+02 0.01 23.3 11.7 13 242-254 107-119 (375)
110 COG5415 Predicted integral mem 26.0 3.7E+02 0.0079 22.0 15.0 68 139-206 67-135 (251)
111 PRK05759 F0F1 ATP synthase sub 25.4 3E+02 0.0065 20.8 7.1 25 140-164 4-28 (156)
112 PF13748 ABC_membrane_3: ABC t 25.4 4E+02 0.0087 22.2 20.3 99 22-123 23-129 (237)
113 PRK04778 septation ring format 24.2 5E+02 0.011 24.8 8.6 36 177-212 40-75 (569)
114 PF02355 SecD_SecF: Protein ex 23.3 3.9E+02 0.0084 21.3 10.0 20 137-156 50-69 (189)
115 COG1380 Putative effector of m 23.2 3.2E+02 0.007 20.4 7.2 55 104-171 66-120 (128)
116 PF04120 Iron_permease: Low af 23.1 3.3E+02 0.0072 20.4 11.4 18 197-214 94-111 (132)
117 COG1862 YajC Preprotein transl 21.8 2.1E+02 0.0045 20.2 4.2 17 161-177 26-42 (97)
118 COG1033 Predicted exporters of 21.2 3.6E+02 0.0079 26.7 7.0 16 137-152 242-257 (727)
119 PF06160 EzrA: Septation ring 21.1 5.6E+02 0.012 24.4 8.3 40 175-214 34-73 (560)
120 PF14584 DUF4446: Protein of u 20.0 4.1E+02 0.009 20.4 6.8 47 148-194 12-59 (151)
No 1
>KOG0058|consensus
Probab=99.97 E-value=1.7e-28 Score=223.23 Aligned_cols=234 Identities=14% Similarity=0.105 Sum_probs=222.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHH
Q psy6082 24 IASATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLS 103 (275)
Q Consensus 24 ~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~ 103 (275)
.....-.+..+.++.+++++++..+.++....++++..++|.++|+++++++.+|||++++||+++|++.|+..+.+.+.
T Consensus 184 ~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs 263 (716)
T KOG0058|consen 184 ADALKRACTILLGLFLIGALANAIRGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVS 263 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHH
Confidence 44444455666666777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q psy6082 104 AMVFNIVPTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKA 183 (275)
Q Consensus 104 ~~~~~~i~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (275)
..+...+++.+..++.+++| ++.||.++++.++.+|+...+...++++.++..++.+++.++.++..
T Consensus 264 ~nls~~lR~~~~~~g~~~~M-------------~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~va 330 (716)
T KOG0058|consen 264 QNLSDGLRNLVQGFGGLGFM-------------FSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVA 330 (716)
T ss_pred HHHHHHHHHHHHHHHhHHHH-------------hhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHhhcchHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHH
Q psy6082 184 IDSLINYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQLLDCLLTWQKQ 263 (275)
Q Consensus 184 ~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~ltiG~~~~~ 263 (275)
.|.+.++++||+|+.|+.|.+||.+..++..+...|.......+....++...+..+.++++|++++..|.||.|++.+|
T Consensus 331 eE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sF 410 (716)
T KOG0058|consen 331 EEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSF 410 (716)
T ss_pred HHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhh
Q psy6082 264 NFIRCTL 270 (275)
Q Consensus 264 ~~~~~~~ 270 (275)
-.|+..+
T Consensus 411 llY~~~~ 417 (716)
T KOG0058|consen 411 LLYQVQL 417 (716)
T ss_pred HHHHHHH
Confidence 9888765
No 2
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.97 E-value=9.6e-28 Score=202.28 Aligned_cols=227 Identities=18% Similarity=0.193 Sum_probs=210.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHHHHHHHHHHHH
Q psy6082 34 YGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTI 113 (275)
Q Consensus 34 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~i~~~ 113 (275)
++++.++...+.....+...+...+...++|+++++|+++.|.++|+++++|++.+|+++|++.+++.+...+..++..+
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~ 126 (275)
T PF00664_consen 47 LIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLFEKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSI 126 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccccccccccccc
Confidence 33333444556666667788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcchHHH
Q psy6082 114 FELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETV 193 (275)
Q Consensus 114 ~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~i 193 (275)
..+++.++++ +..+|+++++.+++.++..++.....++.++..++.+++.++..+.+.|.++|+++|
T Consensus 127 ~~~i~~~~~~-------------~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I 193 (275)
T PF00664_consen 127 ISIIFSLILL-------------FFISWKLALILLIILPLLFLISFIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTI 193 (275)
T ss_dssp HHHHHHHHHH-------------HHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred chhhhhhhcc-------------cccccccccccchhhhhhHhhhhhhccccccccccccccccccccccccchhhhHHH
Confidence 9999989999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhh-hhcccchhhHHHHHHHHHhhhcc
Q psy6082 194 KYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFE-PHQLLDCLLTWQKQNFIRCTLTW 272 (275)
Q Consensus 194 k~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~-v~~g~ltiG~~~~~~~~~~~~~~ 272 (275)
|+||.|+++.+++++..++..+...+............+.+..+..++++++|+++ +.+|.+|+|++..+..+...+.+
T Consensus 194 k~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~ 273 (275)
T PF00664_consen 194 KAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSIVLILIFGAYLSVINGQISIGTLVAFLSLSSQLIN 273 (275)
T ss_dssp HHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999 99999999999999888887776
Q ss_pred c
Q psy6082 273 A 273 (275)
Q Consensus 273 ~ 273 (275)
|
T Consensus 274 p 274 (275)
T PF00664_consen 274 P 274 (275)
T ss_dssp H
T ss_pred h
Confidence 5
No 3
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.95 E-value=7.2e-26 Score=212.34 Aligned_cols=236 Identities=17% Similarity=0.189 Sum_probs=225.0
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHH
Q psy6082 22 ALIASATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFV 101 (275)
Q Consensus 22 ~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~ 101 (275)
.....+..+.+++++..++..++..++.+...++++++..++..++|+|++++|+.||+++++||+++|+ +|.++++++
T Consensus 188 ~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~-~el~~Ir~f 266 (709)
T COG2274 188 ASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRV-RELEQIREF 266 (709)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHH-HHHHHHHHH
Confidence 3444566777788888888899999999999999999999999999999999999999999999999999 779999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy6082 102 LSAMVFNIVPTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGN 181 (275)
Q Consensus 102 ~~~~~~~~i~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (275)
+.......+.+++..++.+++| ++++|++++++++.++++..+.....+..++..++..+..++.++
T Consensus 267 lt~~~l~~iiD~~~~~i~l~vm-------------~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s 333 (709)
T COG2274 267 LTGSILTLIIDLLFALIFLAVM-------------FLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQS 333 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhHHH
Q psy6082 182 KAIDSLINYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQLLDCLLTWQ 261 (275)
Q Consensus 182 ~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~ltiG~~~ 261 (275)
.+.|.+.|++++|..+.|++...+|++...+..+...+..+.....+.+..++..+..++++++|+++|.+|.+|+|++.
T Consensus 334 ~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~Li 413 (709)
T COG2274 334 FLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLV 413 (709)
T ss_pred HHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhc
Q psy6082 262 KQNFIRCTLT 271 (275)
Q Consensus 262 ~~~~~~~~~~ 271 (275)
++|.+..+.+
T Consensus 414 Af~~l~~~f~ 423 (709)
T COG2274 414 AFNMLAGYFI 423 (709)
T ss_pred HHHHHHHHHH
Confidence 9998876653
No 4
>KOG0057|consensus
Probab=99.94 E-value=1.1e-24 Score=192.64 Aligned_cols=250 Identities=52% Similarity=0.772 Sum_probs=231.6
Q ss_pred hhhhhcccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHh
Q psy6082 12 ALLELTNATDALIASATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKII 91 (275)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i 91 (275)
|.++..++.++.+......+.+|+++++.+.+++.++...+.++.+++.++.-+++|++++++++++|.+.++|++.+.+
T Consensus 58 d~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~i 137 (591)
T KOG0057|consen 58 DGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRII 137 (591)
T ss_pred hhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHH
Confidence 33443333336677778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6082 92 DRGSRGINFVLSAMVFNIVPTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVN 171 (275)
Q Consensus 92 ~~d~~~i~~~~~~~~~~~i~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~ 171 (275)
++....+.+++...+.++++.++.+......+ .+.+++.++++.++....|..++....++..+.+++
T Consensus 138 dRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l------------~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~ 205 (591)
T KOG0057|consen 138 DRGSRAISFVLSAMVFNIIPTLFEIALVSGIL------------YYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKA 205 (591)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHH
Confidence 99999999999999999999999988888777 377788999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHhhcchHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy6082 172 MNKAENEAGNKAIDSLINYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPH 251 (275)
Q Consensus 172 ~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~ 251 (275)
++++.++..+.+.|.+.|+++||+||.|++|.++|++..+++.+...+.....+..+..+..+.......++..|..-+.
T Consensus 206 ~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~ 285 (591)
T KOG0057|consen 206 MNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIA 285 (591)
T ss_pred HHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHHhhhccc
Q psy6082 252 QLLDCLLTWQKQNFIRCTLTWA 273 (275)
Q Consensus 252 ~g~ltiG~~~~~~~~~~~~~~~ 273 (275)
+|.||+|++...|-+.+-|+=+
T Consensus 286 ~~~mtvgdlv~~n~l~~qL~~~ 307 (591)
T KOG0057|consen 286 AGKMTVGDLVMVNSLLFQLSLP 307 (591)
T ss_pred hccccccchhhHHHHHHHHHhH
Confidence 9999999998888777766543
No 5
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.93 E-value=1.2e-23 Score=200.94 Aligned_cols=229 Identities=15% Similarity=0.171 Sum_probs=209.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHHHHHHH
Q psy6082 29 SIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFN 108 (275)
Q Consensus 29 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~ 108 (275)
.++++++++.++..++.+++.+...+.+.++..++|.++|+|++++|+++|+++++|++++|+ +|++.+++++......
T Consensus 180 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~ 258 (694)
T TIGR01846 180 VLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALT 258 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHH
Confidence 344455556666788999999999999999999999999999999999999999999999999 6999999999888888
Q ss_pred HHHHHHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhc
Q psy6082 109 IVPTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLI 188 (275)
Q Consensus 109 ~i~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~ 188 (275)
.+.+++..++.++++ ++++|+++++++++.+++.++.....++.++..++..++.++..+.+.|.++
T Consensus 259 ~~~~~~~~~~~~~~l-------------~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~ 325 (694)
T TIGR01846 259 VVLDLLFVVVFLAVM-------------FFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVT 325 (694)
T ss_pred HHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 887777777778888 8999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHHHHHh
Q psy6082 189 NYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQLLDCLLTWQKQNFIRC 268 (275)
Q Consensus 189 ~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~ltiG~~~~~~~~~~ 268 (275)
|+++||++|.|+.+.++|++..++..+...+..+.......+..++..+..++++++|++++.+|.+|+|++.++..+..
T Consensus 326 g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~ 405 (694)
T TIGR01846 326 GIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAG 405 (694)
T ss_pred hHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988877655
Q ss_pred hhc
Q psy6082 269 TLT 271 (275)
Q Consensus 269 ~~~ 271 (275)
.+.
T Consensus 406 ~~~ 408 (694)
T TIGR01846 406 RVT 408 (694)
T ss_pred HHH
Confidence 443
No 6
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.93 E-value=2.1e-23 Score=193.68 Aligned_cols=221 Identities=12% Similarity=0.010 Sum_probs=198.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHHHHHHHHHHHHHHH
Q psy6082 37 ARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFEL 116 (275)
Q Consensus 37 ~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~i~~~~~~ 116 (275)
+.++..++.++..+...+...++..++|.++|+|++++|+++|++.++|++++|+++|++.+++.+...+..++..++.+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~ 141 (529)
T TIGR02868 62 FGIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVG 141 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556788899999999999999999999999999999999999999999999999999999999998888899999988
Q ss_pred HHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHhhcchHHHHh
Q psy6082 117 ALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQW-RTQFRVNMNKAENEAGNKAIDSLINYETVKY 195 (275)
Q Consensus 117 i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~ 195 (275)
++.++++ ++++|.+++++++..+++.++...+.++ .++..++.++..++..+.+.|.++|+++||+
T Consensus 142 ~~~~~~l-------------~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~ 208 (529)
T TIGR02868 142 SAAVAAI-------------ALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVA 208 (529)
T ss_pred HHHHHHH-------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 8888999 9999999999988877776666555544 4666777788899999999999999999999
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHHHHHhhh
Q psy6082 196 FNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQLLDCLLTWQKQNFIRCTL 270 (275)
Q Consensus 196 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~ltiG~~~~~~~~~~~~ 270 (275)
||.|+.+.+++++..+++.+...+..+..........++..+..++++++|++++.+|.+|+|++..+..+...+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~ 283 (529)
T TIGR02868 209 YGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAA 283 (529)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999988877665443
No 7
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.93 E-value=2.5e-23 Score=199.17 Aligned_cols=226 Identities=15% Similarity=0.162 Sum_probs=207.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHHHHHHHHH
Q psy6082 31 ILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIV 110 (275)
Q Consensus 31 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~i 110 (275)
.++++++.++..++.+++.++..+.+.++..++|.++|+|++++|+++|+++++|++++|++ |.+.+++.+.......+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~ 277 (708)
T TIGR01193 199 SIGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLF 277 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHH
Confidence 34445555667888999999999999999999999999999999999999999999999997 89999999988888888
Q ss_pred HHHHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcch
Q psy6082 111 PTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINY 190 (275)
Q Consensus 111 ~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i 190 (275)
.+++..++.++++ ++++|+++++++++.+++.++...+.++.++..++..+..++..+.+.|.++|+
T Consensus 278 ~~~~~~~~~~~~l-------------~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi 344 (708)
T TIGR01193 278 LDMWILVIVGLFL-------------VRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGI 344 (708)
T ss_pred HHHHHHHHHHHHH-------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 8888888888888 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHHHHHhhh
Q psy6082 191 ETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQLLDCLLTWQKQNFIRCTL 270 (275)
Q Consensus 191 ~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~ltiG~~~~~~~~~~~~ 270 (275)
++||++|.|+.+.++|++..+++.+...+..........+..++..+..++++++|++++.+|.+|+|++.++..+...+
T Consensus 345 ~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~ 424 (708)
T TIGR01193 345 ETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYF 424 (708)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988888888888888999999999999999999999998877665443
No 8
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.93 E-value=3.4e-23 Score=192.23 Aligned_cols=228 Identities=12% Similarity=0.066 Sum_probs=204.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHHHHHHHH
Q psy6082 30 IILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNI 109 (275)
Q Consensus 30 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~ 109 (275)
+++.++++.++..++.+++.+...+.+.+...++|.++|+|+++.|+++|++.++|++++|+++|++.+++.+...+..+
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~ 125 (529)
T TIGR02857 46 ALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQL 125 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33444555566788899999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcc
Q psy6082 110 VPTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLIN 189 (275)
Q Consensus 110 i~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~ 189 (275)
+..++.+++.++++ +.++|.+++++++..|+..++.....++.++..++.++..++..+.+.|.++|
T Consensus 126 ~~~~~~~~~~~~~l-------------~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g 192 (529)
T TIGR02857 126 VLAVIIPLAILAAV-------------FPADWISGLILLLTAPLIPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRG 192 (529)
T ss_pred HHHHHHHHHHHHHH-------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88888888888888 89999999999988888888888888889888999999999999999999999
Q ss_pred hHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHHHHHhh
Q psy6082 190 YETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQLLDCLLTWQKQNFIRCT 269 (275)
Q Consensus 190 i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~ltiG~~~~~~~~~~~ 269 (275)
+++||+|+.|+.+.++|++..+++.+...+..+.......+..++..+..+++..++++.+.+|.+|+|++..+..+...
T Consensus 193 ~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~ 272 (529)
T TIGR02857 193 LPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPE 272 (529)
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988888888888888888877788888888999999998777655444
Q ss_pred h
Q psy6082 270 L 270 (275)
Q Consensus 270 ~ 270 (275)
+
T Consensus 273 ~ 273 (529)
T TIGR02857 273 F 273 (529)
T ss_pred H
Confidence 3
No 9
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.93 E-value=4.9e-23 Score=192.46 Aligned_cols=227 Identities=11% Similarity=0.061 Sum_probs=200.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHHHHHHHHHHHH
Q psy6082 34 YGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTI 113 (275)
Q Consensus 34 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~i~~~ 113 (275)
++++.++..++.++.++...+.+.+...++|.++|+|++++|+++|+++++|++++|+++|++.++..+...+..++..+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~ 121 (569)
T PRK10789 42 MVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSL 121 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33444556778889999999999999999999999999999999999999999999999999999987777777777776
Q ss_pred HHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcchHHH
Q psy6082 114 FELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETV 193 (275)
Q Consensus 114 ~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~i 193 (275)
+..++.++++ ++.++|.++++++++.|+..++...+.++.++..++.++..+++.+.+.|.++|++++
T Consensus 122 ~~~~~~~~~~------------~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~i 189 (569)
T PRK10789 122 VMGCAVLIVM------------STQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMI 189 (569)
T ss_pred HHHHHHHHHH------------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHH
Confidence 6655555554 1478999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHHHHHhhhcc
Q psy6082 194 KYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQLLDCLLTWQKQNFIRCTLTW 272 (275)
Q Consensus 194 k~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~ltiG~~~~~~~~~~~~~~ 272 (275)
|++|.|+.+.++|++..++..+...+..+..............+..++++++|++++.+|.+|+|++.++..+...+..
T Consensus 190 k~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~ 268 (569)
T PRK10789 190 KAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIW 268 (569)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998888888888888888889999999999999999999888776665544
No 10
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.93 E-value=3.5e-23 Score=197.73 Aligned_cols=225 Identities=18% Similarity=0.153 Sum_probs=206.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHHHHHHHHHHH
Q psy6082 33 GYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPT 112 (275)
Q Consensus 33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~i~~ 112 (275)
.++++.++..++.+++.+.......++..++|.++|++++++|+++|++.++|++.+|+++|++.+++.+...+..++..
T Consensus 206 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~ 285 (711)
T TIGR00958 206 FMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRN 285 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555677888899999999999999999999999999999999999999999999999999999999999989999
Q ss_pred HHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcchHH
Q psy6082 113 IFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYET 192 (275)
Q Consensus 113 ~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ 192 (275)
++.+++.++++ +.++|+++++.++..++..++...+.++.++..++.++..++..+.+.|.++|+++
T Consensus 286 ~~~~i~~~~~l-------------~~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ 352 (711)
T TIGR00958 286 LVMLLGLLGFM-------------LWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRT 352 (711)
T ss_pred HHHHHHHHHHH-------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHHHHHhhh
Q psy6082 193 VKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQLLDCLLTWQKQNFIRCTL 270 (275)
Q Consensus 193 ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~ltiG~~~~~~~~~~~~ 270 (275)
||+|+.|+++.++|++..++..+...+.............++..+..++++.+|++++.+|.+|+|++.++..+...+
T Consensus 353 Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l 430 (711)
T TIGR00958 353 VRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQL 430 (711)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999998888888888888888888889999999999999999999998877665544
No 11
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.93 E-value=4.4e-23 Score=196.80 Aligned_cols=230 Identities=13% Similarity=0.092 Sum_probs=210.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHHHHHH
Q psy6082 28 TSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVF 107 (275)
Q Consensus 28 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~ 107 (275)
..++++++++.++..++.+++.+...+.+.++..++|.++|+|++++|+++|+++++|++++|++ |.+.+++.+.....
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~ 254 (686)
T TIGR03797 176 VQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTL 254 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHH
Confidence 34455555666667889999999999999999999999999999999999999999999999996 79999999988888
Q ss_pred HHHHHHHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhh
Q psy6082 108 NIVPTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSL 187 (275)
Q Consensus 108 ~~i~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l 187 (275)
..+.+.+..++.++++ +.++|+++++.+++.++..++.....++.++..++..+..++..+.+.|.+
T Consensus 255 ~~~~~~~~~~~~~~~l-------------~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l 321 (686)
T TIGR03797 255 TTLLSGIFALLNLGLM-------------FYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLI 321 (686)
T ss_pred HHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888 999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHHHHH
Q psy6082 188 INYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQLLDCLLTWQKQNFIR 267 (275)
Q Consensus 188 ~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~ltiG~~~~~~~~~ 267 (275)
+|++++|++|.|+++.++|++..++..+...+..........+...+..+..++++++|++++.+|.+|+|++.++..+.
T Consensus 322 ~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~ 401 (686)
T TIGR03797 322 NGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAF 401 (686)
T ss_pred ccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998887765
Q ss_pred hhhc
Q psy6082 268 CTLT 271 (275)
Q Consensus 268 ~~~~ 271 (275)
..+.
T Consensus 402 ~~~~ 405 (686)
T TIGR03797 402 GSFS 405 (686)
T ss_pred HHHH
Confidence 5544
No 12
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.93 E-value=4.7e-23 Score=197.37 Aligned_cols=229 Identities=13% Similarity=0.133 Sum_probs=211.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHHHHHHHH
Q psy6082 30 IILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNI 109 (275)
Q Consensus 30 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~ 109 (275)
++++++++.++..++.+++.++..+.+.++..+++.++|+|++++|+++|+++++|++++|+++| +.+++++...+...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~ 274 (710)
T TIGR03796 196 LLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATT 274 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHH
Confidence 44455556666788999999999999999999999999999999999999999999999999888 78999998888889
Q ss_pred HHHHHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcc
Q psy6082 110 VPTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLIN 189 (275)
Q Consensus 110 i~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~ 189 (275)
+.+++.+++.++++ +.++|+++++.++..++..++...+.++.++..++..+..++..+.+.|.++|
T Consensus 275 ~~~~~~~~~~~~~l-------------~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~ 341 (710)
T TIGR03796 275 ALDAVMLVFYALLM-------------LLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQS 341 (710)
T ss_pred HHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHHHHHhh
Q psy6082 190 YETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQLLDCLLTWQKQNFIRCT 269 (275)
Q Consensus 190 i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~ltiG~~~~~~~~~~~ 269 (275)
+++||++|.|+.+.++|++..++..+...+..........+...+..+..++++++|++++.+|.+|+|++.++..+...
T Consensus 342 i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~ 421 (710)
T TIGR03796 342 IETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSS 421 (710)
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887776655
Q ss_pred hcc
Q psy6082 270 LTW 272 (275)
Q Consensus 270 ~~~ 272 (275)
+..
T Consensus 422 ~~~ 424 (710)
T TIGR03796 422 FLE 424 (710)
T ss_pred HHH
Confidence 443
No 13
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.93 E-value=6.7e-23 Score=191.93 Aligned_cols=221 Identities=11% Similarity=0.017 Sum_probs=198.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHHHHHHHHHHHHHHHH
Q psy6082 38 RICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELA 117 (275)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~i~~~~~~i 117 (275)
.++..+..++..+...+...++..++|.++|+|++++|+++|+++++|++++|+++|++.+++.+...+...+..++.++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~ 145 (585)
T TIGR01192 66 GVFNTIAYVLVAREADRLAHGRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALF 145 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666677777777777888888889999999999999999999999999999999999999888888888888888
Q ss_pred HHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcchHHHHhhh
Q psy6082 118 LISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFN 197 (275)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~ 197 (275)
+.++++ +.++|.++++++++.|++.++...+.++.++..++..+..++..+.+.|.++|+++||++|
T Consensus 146 ~~~~~l-------------~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~ 212 (585)
T TIGR01192 146 LLIPTA-------------FAMDWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYN 212 (585)
T ss_pred HHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhc
Confidence 888888 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHHHHHhhhc
Q psy6082 198 NEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQLLDCLLTWQKQNFIRCTLT 271 (275)
Q Consensus 198 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~ltiG~~~~~~~~~~~~~ 271 (275)
.|+.+.+++++..+++.+...+..+.......+...+..+..++++++|++++.+|.+|+|++.++..+...+.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~ 286 (585)
T TIGR01192 213 RIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLI 286 (585)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888888888888888888899999999999999999999988776655443
No 14
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.93 E-value=5.3e-23 Score=192.30 Aligned_cols=219 Identities=11% Similarity=-0.018 Sum_probs=198.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHHHHHHHHHHHH
Q psy6082 34 YGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTI 113 (275)
Q Consensus 34 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~i~~~ 113 (275)
+.++.++..++.++.++..++.+.++..++|.++|+|++++|+++|++.++|++++|+++|++.+++++...+..++..+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~ 145 (574)
T PRK11160 66 VRGAAIGRTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAAL 145 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43445566888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcchHH
Q psy6082 114 FELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTA-YTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYET 192 (275)
Q Consensus 114 ~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ 192 (275)
+.+++.++++ ++++|+++++++++.|+..+ +...+.++.++..++.+++.+++.+.+.|.++|+++
T Consensus 146 ~~~~~~~~~l-------------~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ 212 (574)
T PRK11160 146 VVILVLTIGL-------------SFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAE 212 (574)
T ss_pred HHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHH
Confidence 9999999999 99999999998877776654 456677888888899999999999999999999999
Q ss_pred HHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHHHH
Q psy6082 193 VKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQLLDCLLTWQKQNFI 266 (275)
Q Consensus 193 ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~ltiG~~~~~~~~ 266 (275)
+|+||.|+++.+++++..+++.+...+..+.......+..++..+..++++++|+++ .+|.+|+|++.++..+
T Consensus 213 ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~ 285 (574)
T PRK11160 213 LTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVF 285 (574)
T ss_pred HHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHH
Confidence 999999999999999999999999999999999999999999888888999999998 4899999998776543
No 15
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.93 E-value=7.6e-23 Score=191.64 Aligned_cols=230 Identities=15% Similarity=0.166 Sum_probs=214.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHHHHHHHHH
Q psy6082 31 ILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIV 110 (275)
Q Consensus 31 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~i 110 (275)
+++++++.++..++.+++.+...+.+.++..++|+.+++++.+.|.+++++.++|++.+|+++|++.+++.+...+..++
T Consensus 57 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i 136 (571)
T TIGR02203 57 PLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLV 136 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556666888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcch
Q psy6082 111 PTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINY 190 (275)
Q Consensus 111 ~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i 190 (275)
.+++.+++.++++ ++++|+++++++++.++..++.....++.++..++..+..++..+.+.|.++|+
T Consensus 137 ~~~~~~~~~~~~l-------------~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~ 203 (571)
T TIGR02203 137 RETLTVIGLFIVL-------------LYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGY 203 (571)
T ss_pred HHHHHHHHHHHHH-------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHHHHHhhh
Q psy6082 191 ETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQLLDCLLTWQKQNFIRCTL 270 (275)
Q Consensus 191 ~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~ltiG~~~~~~~~~~~~ 270 (275)
+++|.++.|+++.+++++..++..+...+..+.......+..++..+..++++++|++++.+|.+|+|++.++..+...+
T Consensus 204 ~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~ 283 (571)
T TIGR02203 204 RVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIAL 283 (571)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888766655
Q ss_pred ccc
Q psy6082 271 TWA 273 (275)
Q Consensus 271 ~~~ 273 (275)
.+|
T Consensus 284 ~~p 286 (571)
T TIGR02203 284 IRP 286 (571)
T ss_pred HHH
Confidence 544
No 16
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.92 E-value=5.5e-23 Score=196.40 Aligned_cols=228 Identities=11% Similarity=0.089 Sum_probs=208.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHHHHHHHH
Q psy6082 30 IILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNI 109 (275)
Q Consensus 30 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~ 109 (275)
++++++++.++..++.+++.++..+.+.++..++|.++|+|++++|+++ +++++|++++|+ +|++.+++.+.......
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~ 266 (694)
T TIGR03375 189 LAIGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTA 266 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHH
Confidence 3344445556678899999999999999999999999999999999998 788999999999 79999999998888888
Q ss_pred HHHHHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcc
Q psy6082 110 VPTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLIN 189 (275)
Q Consensus 110 i~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~ 189 (275)
+.+++.+++.++++ ++++|+++++.++..++++++...+.++.++..++..+..++..+.+.|.++|
T Consensus 267 ~~~~~~~~~~~~~l-------------~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g 333 (694)
T TIGR03375 267 LIDLPFALLFLLVI-------------AIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSG 333 (694)
T ss_pred HHHHHHHHHHHHHH-------------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888888888888 89999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHHHHHhh
Q psy6082 190 YETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQLLDCLLTWQKQNFIRCT 269 (275)
Q Consensus 190 i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~ltiG~~~~~~~~~~~ 269 (275)
+++||.++.|+.+.++|++..++..+...+..+.......+...+..+..++++++|++++.+|.+|+|++.++..+...
T Consensus 334 i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~ 413 (694)
T TIGR03375 334 LETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGR 413 (694)
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888777655
Q ss_pred hcc
Q psy6082 270 LTW 272 (275)
Q Consensus 270 ~~~ 272 (275)
+..
T Consensus 414 ~~~ 416 (694)
T TIGR03375 414 ALA 416 (694)
T ss_pred HHH
Confidence 543
No 17
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.92 E-value=1.4e-22 Score=190.38 Aligned_cols=215 Identities=12% Similarity=0.077 Sum_probs=193.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHHHHHHHHHH
Q psy6082 32 LGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVP 111 (275)
Q Consensus 32 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~i~ 111 (275)
.+++++.++..++.+++.+...+.+.++..++|.++|+|++++|+++|+++++|++++|+++|++.+++.+...+..++.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~ 146 (588)
T PRK11174 67 ILLILLFVLRALLAWLRERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMAL 146 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34445556678888999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred HHHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcchH
Q psy6082 112 TIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYE 191 (275)
Q Consensus 112 ~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~ 191 (275)
.++.+++.++++ ++++|+++++++++.|+..++...+.++.++..++.++..++..+.+.|.++|++
T Consensus 147 ~~~~~~~~~~~l-------------~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~ 213 (588)
T PRK11174 147 AVLVPLLILIAV-------------FPINWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLE 213 (588)
T ss_pred HHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 999888888888 9999999999999999988888899999999999999999999999999999999
Q ss_pred HHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhHH
Q psy6082 192 TVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQLLDCLLTW 260 (275)
Q Consensus 192 ~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~ltiG~~ 260 (275)
+||+|+.|+.+.+++++..+++.+...+..+.......+..++..+..+++++++++.+. |.+|+|++
T Consensus 214 ~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~t~G~l 281 (588)
T PRK11174 214 TLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSSAVLEFFASISIALVAVYFGFSYL-GELNFGHY 281 (588)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccc
Confidence 999999999999999999999999999988888878887777777766666666666554 88999975
No 18
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.92 E-value=2.5e-22 Score=188.50 Aligned_cols=221 Identities=15% Similarity=0.118 Sum_probs=204.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHHHHHHHHHHHH
Q psy6082 34 YGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTI 113 (275)
Q Consensus 34 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~i~~~ 113 (275)
++++.++..++.+++.+...+.+.+...++|.++++++.+.|+++|++.++|++++|+++|++.+++.+...+..++..+
T Consensus 71 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~ 150 (582)
T PRK11176 71 VIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREG 150 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345556788888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcchHHH
Q psy6082 114 FELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETV 193 (275)
Q Consensus 114 ~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~i 193 (275)
+.+++.++++ ++++|+++++++++.++..++.....++.++..++..+..++..+.+.|.++|++++
T Consensus 151 ~~~~~~~~~l-------------~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i 217 (582)
T PRK11176 151 ASIIGLFIMM-------------FYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEV 217 (582)
T ss_pred HHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 9999999999 899999999999998988888889999999999999999999999999999999999
Q ss_pred HhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHHHHH
Q psy6082 194 KYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQLLDCLLTWQKQNFIR 267 (275)
Q Consensus 194 k~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~ltiG~~~~~~~~~ 267 (275)
|.+|.|+.+.++|++..+++.+...+..+.......+..++..+..++++++|++.+.+|.+|+|++..+..+.
T Consensus 218 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~ 291 (582)
T PRK11176 218 LIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSM 291 (582)
T ss_pred HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999986555443
No 19
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.90 E-value=3.5e-21 Score=180.61 Aligned_cols=221 Identities=15% Similarity=0.100 Sum_probs=200.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHHHHHHHHHHHH
Q psy6082 34 YGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTI 113 (275)
Q Consensus 34 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~i~~~ 113 (275)
++++.++..++.+.+.+...+++.++..++|.++++|+++.|.++|++.++|++.+|+++|++.+++.+...+..++..+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~ 143 (576)
T TIGR02204 64 LLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNA 143 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445677788999999999999999999999999999999999999999999999999999999988888889999
Q ss_pred HHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcchHHH
Q psy6082 114 FELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETV 193 (275)
Q Consensus 114 ~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~i 193 (275)
+.+++.++++ +.++|++++++++..++..++...+.++.++..++..+..++..+.+.|.++|+++|
T Consensus 144 ~~~~~~~~~~-------------~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~i 210 (576)
T TIGR02204 144 LMCIGGLIMM-------------FITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTV 210 (576)
T ss_pred HHHHHHHHHH-------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 9998888888 999999999999988888888888999999999999999999999999999999999
Q ss_pred HhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHHHHH
Q psy6082 194 KYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQLLDCLLTWQKQNFIR 267 (275)
Q Consensus 194 k~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~ltiG~~~~~~~~~ 267 (275)
|.++.|+.+.+++++..++..+...+..........+...+..+..++++++|++.+.+|.+|+|++..+..+.
T Consensus 211 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~ 284 (576)
T TIGR02204 211 QAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYA 284 (576)
T ss_pred HHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 99999999999999999999999988888888888888777778888889999999999999999987665443
No 20
>KOG0055|consensus
Probab=99.90 E-value=2.6e-21 Score=185.95 Aligned_cols=219 Identities=15% Similarity=0.095 Sum_probs=209.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhh--cCCchhhhHhhcccchHHHHHHHHHH
Q psy6082 30 IILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLN--RQTGALSKIIDRGSRGINFVLSAMVF 107 (275)
Q Consensus 30 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~--~~~g~l~~~i~~d~~~i~~~~~~~~~ 107 (275)
+.+.+.++.+...+.++++.+++...++++..++|.+.|++++++|.+|||+ ++ |.+.+|+.+|...++..+...+.
T Consensus 709 ~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~ 787 (1228)
T KOG0055|consen 709 WALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLS 787 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHH
Confidence 5666777777889999999999999999999999999999999999999984 45 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhh
Q psy6082 108 NIVPTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSL 187 (275)
Q Consensus 108 ~~i~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l 187 (275)
.++.++..++..+++. +.++|+++++++...|+..+......+.......+..++.++.+....|.+
T Consensus 788 ~vv~~~~~~~~~iiia-------------f~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai 854 (1228)
T KOG0055|consen 788 LVVQNIAAVIIGIIIA-------------FIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAV 854 (1228)
T ss_pred HHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhHHHH
Q psy6082 188 INYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQLLDCLLTWQK 262 (275)
Q Consensus 188 ~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~ltiG~~~~ 262 (275)
.|++||++++.|+++.+.|++..++..+...|...+.+....+.+.+..+..++.+++|++++.+|.++..++.+
T Consensus 855 ~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~ 929 (1228)
T KOG0055|consen 855 SNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFR 929 (1228)
T ss_pred HhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998643
No 21
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.90 E-value=2.8e-21 Score=195.32 Aligned_cols=219 Identities=10% Similarity=-0.060 Sum_probs=201.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHHHHHHHHHH
Q psy6082 32 LGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVP 111 (275)
Q Consensus 32 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~i~ 111 (275)
+.++++.++..++.+++.++...+++++..++|.++|++++++|.+||++.++|++.+++++|++.++..+...+..++.
T Consensus 101 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~ 180 (1466)
T PTZ00265 101 FSLVLIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFT 180 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556667888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcchH
Q psy6082 112 TIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYE 191 (275)
Q Consensus 112 ~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~ 191 (275)
.++.+++.++++ +.++|+++++++++.|+++++...+.++.++..++..+..++..+.+.|.++|++
T Consensus 181 ~~~~~i~~~i~~-------------~~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~ 247 (1466)
T PTZ00265 181 YASAFLGLYIWS-------------LFKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIR 247 (1466)
T ss_pred HHHHHHHHHHHH-------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH
Confidence 999999999999 9999999999999999999999999999988888888889999999999999999
Q ss_pred HHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhcc--------cchhhHHHHH
Q psy6082 192 TVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQL--------LDCLLTWQKQ 263 (275)
Q Consensus 192 ~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g--------~ltiG~~~~~ 263 (275)
+||+|+.|+.+.++|++..+++.+...+.....+....+..++..+..++++++|++++.+| .+++|++.++
T Consensus 248 tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~ 327 (1466)
T PTZ00265 248 TVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISI 327 (1466)
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHH
Confidence 99999999999999999999999999999999999888989998999999999999999986 4677765543
No 22
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.90 E-value=7.2e-21 Score=178.72 Aligned_cols=216 Identities=14% Similarity=0.072 Sum_probs=193.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHHHHHHHHHHHHHHHHH
Q psy6082 39 ICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELAL 118 (275)
Q Consensus 39 i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~i~~~~~~i~ 118 (275)
++..+..++..+...+...+...++++++|+|+.++|++++++.++|++++|+++|++.+.+.+...+...+..++..++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~ 146 (588)
T PRK13657 67 LFNIIAGVLVARHADRLAHRRRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVV 146 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345556666666777777777888899999999999999999999999999999999998888888888888888877
Q ss_pred HHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcchHHHHhhhc
Q psy6082 119 ISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNN 198 (275)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~ 198 (275)
.++++ +.++|+++++++++.+++.++...+.++.++..++..+..++..+.+.|.++|++++|.+|.
T Consensus 147 ~~~~~-------------~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~ 213 (588)
T PRK13657 147 LLPLA-------------LFMNWRLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNR 213 (588)
T ss_pred HHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccc
Confidence 78888 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHHHHH
Q psy6082 199 EKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQLLDCLLTWQKQNFIR 267 (275)
Q Consensus 199 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~ltiG~~~~~~~~~ 267 (275)
++.+.+++++..++..+...+..........+..++..+..++++++|++++.+|.+|+|++..+..+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~ 282 (588)
T PRK13657 214 IEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFA 282 (588)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHH
Confidence 999999999999999999999999988888888888889999999999999999999999987665443
No 23
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.89 E-value=9.8e-21 Score=176.44 Aligned_cols=217 Identities=10% Similarity=-0.054 Sum_probs=181.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHHHHHHHHHHHHHHHHH
Q psy6082 39 ICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELAL 118 (275)
Q Consensus 39 i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~i~~~~~~i~ 118 (275)
++..++.++..+..+..+.++..++|.++|+|++++|+++|++.++|++++|+++|++.+++.+.. ...++..++.+++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~ 142 (555)
T TIGR01194 64 LLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFF 142 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 344677888999999999999999999999999999999999999999999999999999998864 6678888888888
Q ss_pred HHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcchHHHHhhhc
Q psy6082 119 ISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNN 198 (275)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~ 198 (275)
.++++ ++++|.+++++++..|+..++.....++.++..++.++..+++.+.+.|.+.|++++|.++.
T Consensus 143 ~~~~l-------------~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~ 209 (555)
T TIGR01194 143 CIAYL-------------AYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGI 209 (555)
T ss_pred HHHHH-------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHH
Confidence 88888 99999999999888888888888888888888888899999999999999999999999999
Q ss_pred h--HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHHHHHhhhcc
Q psy6082 199 E--KFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQLLDCLLTWQKQNFIRCTLTW 272 (275)
Q Consensus 199 e--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~ltiG~~~~~~~~~~~~~~ 272 (275)
+ ..+.+++++..+++.+...+..........+...+..+...+.+++|++. |.+|+|++.++..+...+..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~ 282 (555)
T TIGR01194 210 RRLSFAHGAIQESANNIADLHIIEILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKG 282 (555)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHH
Confidence 5 46678899999998888887766665555555555444444445555543 79999998887776665544
No 24
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.89 E-value=1.9e-20 Score=176.09 Aligned_cols=227 Identities=11% Similarity=0.053 Sum_probs=192.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHHHHHHHHHH
Q psy6082 32 LGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVP 111 (275)
Q Consensus 32 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~i~ 111 (275)
++++++.++..++.+.+.+.....+.+...++|.++|+++.+.|+++|++.++|++++|+++|++.+++.+......++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~ 148 (592)
T PRK10790 69 AAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLR 148 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555667888999999999999999999999999999999999999999999999999999999999999998999
Q ss_pred HHHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcchH
Q psy6082 112 TIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYE 191 (275)
Q Consensus 112 ~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~ 191 (275)
.++.+++.++++ ++++|+++++.+++.|+..+......++.++..++.++..++..+.+.|.++|++
T Consensus 149 ~~~~~~~~~~~~-------------~~~~~~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~ 215 (592)
T PRK10790 149 SAALIGAMLVAM-------------FSLDWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMS 215 (592)
T ss_pred HHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChH
Confidence 998888888888 8999999999888888877777778888888888888899999999999999999
Q ss_pred HHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHHHHHhhh
Q psy6082 192 TVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATL-NFGQSAIGKLMLTLVLNLQSFEPHQLLDCLLTWQKQNFIRCTL 270 (275)
Q Consensus 192 ~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~g~~~v~~g~ltiG~~~~~~~~~~~~ 270 (275)
++|.||.|+.+.+++++..++..+...+..+..... ..+..++..+..+++++++++ +..|.+++|++..+..+...+
T Consensus 216 ~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~ 294 (592)
T PRK10790 216 VIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRL 294 (592)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHH
Confidence 999999999999999999999888888777766543 444555555444444444554 689999999998877665554
Q ss_pred cc
Q psy6082 271 TW 272 (275)
Q Consensus 271 ~~ 272 (275)
..
T Consensus 295 ~~ 296 (592)
T PRK10790 295 NE 296 (592)
T ss_pred HH
Confidence 43
No 25
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.88 E-value=3e-20 Score=187.86 Aligned_cols=217 Identities=10% Similarity=0.032 Sum_probs=183.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhh--cCCchhhhHhhcccchHHHHHHHHHHHH
Q psy6082 32 LGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLN--RQTGALSKIIDRGSRGINFVLSAMVFNI 109 (275)
Q Consensus 32 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~--~~~g~l~~~i~~d~~~i~~~~~~~~~~~ 109 (275)
+.++++.++..++.+++.++..+.++++..++|.++|++++++|++||++ +++|++.+|+++|++.++..+...+..+
T Consensus 870 l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~ 949 (1466)
T PTZ00265 870 LYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIF 949 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455667888999999999999999999999999999999999986 8899999999999999999999889889
Q ss_pred HHHHHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------------
Q psy6082 110 VPTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFR-VN----------------- 171 (275)
Q Consensus 110 i~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~-~~----------------- 171 (275)
+..++.+++.++++ ++++|.++++++++.+ ++...+.++.+... ++
T Consensus 950 ~~~i~~~i~~~~~~-------------~~~~~~l~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1013 (1466)
T PTZ00265 950 THFIVLFLVSMVMS-------------FYFCPIVAAVLTGTYF---IFMRVFAIRARLTANKDVEKKEINQPGTVFAYNS 1013 (1466)
T ss_pred HHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhccccccccchhh
Confidence 99999998888888 9999998887654433 33333333322211 11
Q ss_pred HHHHHHhhhhHHHHhhcchHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy6082 172 MNKAENEAGNKAIDSLINYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPH 251 (275)
Q Consensus 172 ~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~ 251 (275)
..+..++....+.|.+.|+++||+|+.|+++.++|++..++..+...+.....+....+.+.+..+..++++++|++++.
T Consensus 1014 ~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~ 1093 (1466)
T PTZ00265 1014 DDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIR 1093 (1466)
T ss_pred hHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23345677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHH
Q psy6082 252 QLLDCLLTWQKQN 264 (275)
Q Consensus 252 ~g~ltiG~~~~~~ 264 (275)
+|.+|+|++.++.
T Consensus 1094 ~g~it~g~l~~~~ 1106 (1466)
T PTZ00265 1094 RGTILVDDFMKSL 1106 (1466)
T ss_pred cCCCCHHHHHHHH
Confidence 9999999987754
No 26
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.88 E-value=7.5e-20 Score=171.16 Aligned_cols=224 Identities=16% Similarity=0.174 Sum_probs=204.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHHHHHHHHHHHHHH
Q psy6082 36 IARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFE 115 (275)
Q Consensus 36 ~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~i~~~~~ 115 (275)
++.++..++.+...+.....+.+...++|++++++++++|+++|++.++|++++|+++|++.++..+......+...++.
T Consensus 60 ~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~ 139 (567)
T COG1132 60 LLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILL 139 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHH
Confidence 33335577778888888888899999999999999999999999999999999999999999999998886656667888
Q ss_pred HHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcchHHHHh
Q psy6082 116 LALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKY 195 (275)
Q Consensus 116 ~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~ 195 (275)
+++.++++ +..+|.+++++++..|+..+....+.++.++..++.++..+++.+.+.|.++|++++|+
T Consensus 140 ~~~~~~~~-------------~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~ 206 (567)
T COG1132 140 LIGSLVLL-------------FSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKA 206 (567)
T ss_pred HHHHHHHH-------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 88888888 99999999999999999999999999888999999999999999999999999999999
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHHHHHhhhcc
Q psy6082 196 FNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQLLDCLLTWQKQNFIRCTLTW 272 (275)
Q Consensus 196 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~ltiG~~~~~~~~~~~~~~ 272 (275)
|+.++.+.+++++..++..+...+.........++...+..+...+++++|++.+..|.+++|++..+..+...+..
T Consensus 207 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 283 (567)
T COG1132 207 FGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLT 283 (567)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998887766655543
No 27
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.88 E-value=4.8e-20 Score=171.62 Aligned_cols=221 Identities=13% Similarity=0.035 Sum_probs=187.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHHH-HHHH
Q psy6082 30 IILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSA-MVFN 108 (275)
Q Consensus 30 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~-~~~~ 108 (275)
++++++++.++..++.+++.+...+.+.++..++|.++|+|++++|+. ..++..+++.+|++.+++.+.. ....
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~ 122 (544)
T TIGR01842 48 LTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFA 122 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHHH
Confidence 334455555666888999999999999999999999999999999983 3466788899999999998876 4444
Q ss_pred HHHHHHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhc
Q psy6082 109 IVPTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLI 188 (275)
Q Consensus 109 ~i~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~ 188 (275)
++..++.+ +.++++ +.++|++++++++..++..++.....++.++..++.++..++..+.+.|.++
T Consensus 123 ~~~~~~~~-~~~~~l-------------~~~~~~l~li~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~ 188 (544)
T TIGR01842 123 FFDAPWMP-IYLLVC-------------FLLHPWIGILALGGAVVLVGLALLNNRATKKPLKEATEASIRANNLADSALR 188 (544)
T ss_pred HHHHHHHH-HHHHHH-------------HHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 44444444 445677 8999999999888888887777777888888888999999999999999999
Q ss_pred chHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHHHHHh
Q psy6082 189 NYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQLLDCLLTWQKQNFIRC 268 (275)
Q Consensus 189 ~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~ltiG~~~~~~~~~~ 268 (275)
|++++|.||.|+.+.++|++..+++.+...+..+.......+...+..+..++++++|++++.+|.+|+|++..+..+..
T Consensus 189 g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~ 268 (544)
T TIGR01842 189 NAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVG 268 (544)
T ss_pred cHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988888888888888889999999999999999999877765544
Q ss_pred h
Q psy6082 269 T 269 (275)
Q Consensus 269 ~ 269 (275)
.
T Consensus 269 ~ 269 (544)
T TIGR01842 269 R 269 (544)
T ss_pred H
Confidence 3
No 28
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=4.5e-21 Score=164.90 Aligned_cols=216 Identities=41% Similarity=0.651 Sum_probs=207.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy6082 48 RNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELALISSILSYKC 127 (275)
Q Consensus 48 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~i~~~~~~i~~~~~l~~~~ 127 (275)
+..++..+++...+.+.-+.|.|++++++.|+.++.+|.+...+.++.+.++......+.+.++.++.+....+++
T Consensus 2 r~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~---- 77 (497)
T COG5265 2 RDRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVIL---- 77 (497)
T ss_pred chHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHH----
Confidence 3556788899999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred cccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcchHHHHhhhchHHHHHHHH
Q psy6082 128 GTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADRYE 207 (275)
Q Consensus 128 ~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~ 207 (275)
+..++|+++++.++++.+|.+++.....|....+++.+++.++.+++..|++-|.+++|.||.|+++..+|+
T Consensus 78 --------~~~~~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~ 149 (497)
T COG5265 78 --------WRVYGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYD 149 (497)
T ss_pred --------HhhcccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcC
Confidence 488999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHHHHHhhhccccC
Q psy6082 208 GVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQLLDCLLTWQKQNFIRCTLTWAEN 275 (275)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~ltiG~~~~~~~~~~~~~~~~~ 275 (275)
+..+.|+++..|......+.+..+..+.......++..+...+.+|.+|+|++.-.|-+..+++-|.|
T Consensus 150 ~~~~~Y~~a~~k~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Pln 217 (497)
T COG5265 150 HALETYEKAAIKVHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLN 217 (497)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999998876
No 29
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=9.7e-19 Score=156.88 Aligned_cols=222 Identities=13% Similarity=0.071 Sum_probs=208.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHHHH
Q psy6082 26 SATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAM 105 (275)
Q Consensus 26 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~ 105 (275)
.+...+++++++.++..++.+.+.....+.+.++..++|+++++|+.++++.+-.+.++|+..+.+.+.+++++..+...
T Consensus 38 ~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ry 117 (559)
T COG4988 38 SLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARY 117 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 34455566666667779999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q psy6082 106 VFNIVPTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAID 185 (275)
Q Consensus 106 ~~~~i~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 185 (275)
++++....+..+..++.+ +++||.-+++++++.|+..++...++.+.++..+++.++..++++.+.|
T Consensus 118 LPq~~~~~ivp~~i~i~v-------------~~~~w~aalIllit~PlIPlfMilvg~~a~~~s~~~~~~~~~ls~~FLD 184 (559)
T COG4988 118 LPQMFLSAIVPLLILIAI-------------FFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLD 184 (559)
T ss_pred HHHHHHHHHHHHHHHHHH-------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred hhcchHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhc-ccchhhHH
Q psy6082 186 SLINYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQ-LLDCLLTW 260 (275)
Q Consensus 186 ~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~-g~ltiG~~ 260 (275)
.++|+.|+|.||+.+...+++.+..+++++..++..+..-....+.+++..++..++..+.++.... |.+|+...
T Consensus 185 ~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~ 260 (559)
T COG4988 185 RLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAG 260 (559)
T ss_pred HhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999888888888 88888764
No 30
>KOG0056|consensus
Probab=99.85 E-value=2.9e-21 Score=168.71 Aligned_cols=218 Identities=33% Similarity=0.494 Sum_probs=204.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHHHHHHHHHHHHHHHHHHH
Q psy6082 41 SSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELALIS 120 (275)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~i~~~~~~i~~~ 120 (275)
+++++.++.+++..+.+...+++..++|+|++++++.||-++.+|+.+..++++.+.+. +....++++.+.+.-+.+++
T Consensus 272 sG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~ 350 (790)
T KOG0056|consen 272 SGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAM 350 (790)
T ss_pred ccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhh
Confidence 46788899999999999999999999999999999999999999999999999999888 88888999999999998888
Q ss_pred HHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcchHHHHhhhchH
Q psy6082 121 SILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEK 200 (275)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~ 200 (275)
++. +..+||+++++++++..++...+..+..|..+.+++++.+.++......|++-|.++||.||+|+
T Consensus 351 vYF------------~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~ 418 (790)
T KOG0056|consen 351 VYF------------FIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAED 418 (790)
T ss_pred hhh------------hhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchh
Confidence 888 58899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHHHHHhhhc
Q psy6082 201 FEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQLLDCLLTWQKQNFIRCTLT 271 (275)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~ltiG~~~~~~~~~~~~~ 271 (275)
+|.+||.++..+|.+.+.|........+..++.+..++...-..+.+|+|..+.+|+|+|..+.-|.--|-
T Consensus 419 yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy 489 (790)
T KOG0056|consen 419 YEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLY 489 (790)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999987766554443
No 31
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.84 E-value=5.4e-19 Score=167.34 Aligned_cols=222 Identities=10% Similarity=0.004 Sum_probs=193.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHHHHH
Q psy6082 27 ATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMV 106 (275)
Q Consensus 27 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~ 106 (275)
++.+++.++++.++..+..++..++......++.++++++.+++....+..+|++ ++|++.+|+++|++.+.+.+...+
T Consensus 138 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~ 216 (659)
T TIGR00954 138 LFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELY 216 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHH
Confidence 4444555666667778888889999999999999999999999988889999987 899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccccccccceee-echhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q psy6082 107 FNIVPTIFELALISSILSYKCGTLISSILSYK-CGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAID 185 (275)
Q Consensus 107 ~~~i~~~~~~i~~~~~l~~~~~~~~~~~~~~~-~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 185 (275)
..++..++.+++.++.+ +. .+|.+++++++..|+..++.+.+.++..+..++.++..+++.+...|
T Consensus 217 ~~l~~~~~~ii~~~~~L-------------~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e 283 (659)
T TIGR00954 217 SNLTKPILDVILYSFKL-------------LTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSR 283 (659)
T ss_pred HHHHHHHHHHHHHHHHH-------------HHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888 65 99999999999999999999999999999999999999999999999
Q ss_pred hhcchHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HHHHHHHHhh-hhhhc----ccchhh
Q psy6082 186 SLINYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKL--MLTLVLNLQS-FEPHQ----LLDCLL 258 (275)
Q Consensus 186 ~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~g~-~~v~~----g~ltiG 258 (275)
.++|+++||.|+.|+.+.+++++..++..+...+..+.......+..++... ..++.++.|. +...+ |.+|+|
T Consensus 284 ~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g 363 (659)
T TIGR00954 284 LIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEE 363 (659)
T ss_pred HHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHH
Confidence 9999999999999999999999999999999999999999999998888753 3333333444 23222 789999
Q ss_pred HHHH
Q psy6082 259 TWQK 262 (275)
Q Consensus 259 ~~~~ 262 (275)
+..+
T Consensus 364 ~~~~ 367 (659)
T TIGR00954 364 ELMQ 367 (659)
T ss_pred HHHH
Confidence 8655
No 32
>KOG0055|consensus
Probab=99.84 E-value=8.7e-19 Score=168.74 Aligned_cols=219 Identities=14% Similarity=0.048 Sum_probs=205.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHHHHHH
Q psy6082 28 TSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVF 107 (275)
Q Consensus 28 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~ 107 (275)
.-..+.+..+.+...+..+++..++...+.|...++|++.++.++++|..|||.+.+|++..++++|++.+++.+..-+.
T Consensus 71 ~~~~l~~~~lg~~~~~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg 150 (1228)
T KOG0055|consen 71 SKVALYFVYLGVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVG 150 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHH
Confidence 33444455555556777799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhh
Q psy6082 108 NIVPTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSL 187 (275)
Q Consensus 108 ~~i~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l 187 (275)
.++..+..++..+++. ++.+|+++++.+.+.|+..+....+.+.+.+..++.+++.++..+.+.|.+
T Consensus 151 ~~i~~~~~fi~g~ii~-------------F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i 217 (1228)
T KOG0055|consen 151 NFIQLLATFIAGFVIG-------------FYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVI 217 (1228)
T ss_pred HHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhH
Q psy6082 188 INYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQLLDCLLT 259 (275)
Q Consensus 188 ~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~ltiG~ 259 (275)
.++++|.+|+.|+.+.+||++.++...+...+.....+.......++......+.+|+|+.++.+|..+.|+
T Consensus 218 ~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~ 289 (1228)
T KOG0055|consen 218 SSIRTVYAFNGEKKEIERYSKALENALKFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGD 289 (1228)
T ss_pred hhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCce
Confidence 999999999999999999999999999999999999999999999999999999999999999998888876
No 33
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.83 E-value=2.4e-18 Score=175.59 Aligned_cols=222 Identities=8% Similarity=0.017 Sum_probs=184.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHHHHHHHHHHH
Q psy6082 33 GYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPT 112 (275)
Q Consensus 33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~i~~ 112 (275)
.|+++.++..++.++..++....+.+...++|+++++++++.|+.||++.++|++++|+++|++.+++.+...+..++..
T Consensus 1010 iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~ 1089 (1522)
T TIGR00957 1010 VYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGS 1089 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556677777888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcchHH
Q psy6082 113 IFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYET 192 (275)
Q Consensus 113 ~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ 192 (275)
++.+++.++++ +..+|.++++++++.+++.++...+.+..++..+...+..+++.+.+.|.++|+++
T Consensus 1090 ~~~~i~~li~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~t 1156 (1522)
T TIGR00957 1090 LFNVIGALIVI-------------LLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSV 1156 (1522)
T ss_pred HHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHH
Confidence 99988888888 78888888877777777777778787888888888888999999999999999999
Q ss_pred HHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhh-cccchhhHHHHHHHHHhhh
Q psy6082 193 VKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPH-QLLDCLLTWQKQNFIRCTL 270 (275)
Q Consensus 193 ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~-~g~ltiG~~~~~~~~~~~~ 270 (275)
||+||.|+++.+++.+..+...+..........+.....+++..+ ++++.+++.+. +|.++.|++..+..+...+
T Consensus 1157 Iraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~ 1232 (1522)
T TIGR00957 1157 IRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNC---IVLFAALFAVISRHSLSAGLVGLSVSYSLQV 1232 (1522)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988888877777777777666665443 33444555554 6889999876555554443
No 34
>PTZ00243 ABC transporter; Provisional
Probab=99.81 E-value=1e-17 Score=170.77 Aligned_cols=213 Identities=9% Similarity=0.039 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6082 42 SGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELALISS 121 (275)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~i~~~~~~i~~~~ 121 (275)
.++..++.+.......+...++|+++++++++.|+.||+++++|++++|+++|++.+++.+...+..++..++.+++.++
T Consensus 1012 ~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li 1091 (1560)
T PTZ00243 1012 TFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSIL 1091 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555566667788999999999999999999999999999999999999999999989889999999888888
Q ss_pred HhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcchHHHHhhhchHH
Q psy6082 122 ILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKF 201 (275)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~ 201 (275)
++ +..+|.+.++++.+..++..+...+.+..++..+......+++.+.+.|.++|+++||+||.|+.
T Consensus 1092 ~~-------------~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~ 1158 (1560)
T PTZ00243 1092 VT-------------SASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHL 1158 (1560)
T ss_pred HH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHH
Confidence 88 78888766665555556666677777888888888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhh--hcccchhhHHHHHHHHH
Q psy6082 202 EADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEP--HQLLDCLLTWQKQNFIR 267 (275)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v--~~g~ltiG~~~~~~~~~ 267 (275)
+.+++.+..++..+...+......+.....+++..+..+++.+++.+.. ..+.+++|....+..+.
T Consensus 1159 ~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a 1226 (1560)
T PTZ00243 1159 VMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMA 1226 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 9999999999999999888888888888888777776665555555443 34557888765554443
No 35
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.80 E-value=8.2e-17 Score=150.04 Aligned_cols=177 Identities=9% Similarity=0.061 Sum_probs=151.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6082 42 SGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELALISS 121 (275)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~i~~~~~~i~~~~ 121 (275)
.++.++.++.....+.++..++|.++|+|++++|+++|+++++|++++|+++|++.+...+. .+..++..++.+++.++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~ 140 (547)
T PRK10522 62 MAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAA 140 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 34567888888999999999999999999999999999999999999999999999998765 46678888888888888
Q ss_pred HhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcchHHHHhhhch--
Q psy6082 122 ILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNE-- 199 (275)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e-- 199 (275)
++ ++++|.++++++++.|+..++.....++.++..++.++..+++.+.+.|.++|+++++ ++.+
T Consensus 141 ~l-------------~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~ 206 (547)
T PRK10522 141 YL-------------AWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERA 206 (547)
T ss_pred HH-------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHH
Confidence 89 9999999999999999988888999999999999999999999999999999999996 4433
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy6082 200 -KFEADRYEGVLKKYEQAALKTSTSLATLNFGQSA 233 (275)
Q Consensus 200 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (275)
+.+.+++++..++..+...+.............+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (547)
T PRK10522 207 EYVFENEYEPDAQEYRHHIIRADTFHLSAVNWSNI 241 (547)
T ss_pred HHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4567888888888888777766655544444333
No 36
>KOG0054|consensus
Probab=99.77 E-value=8.5e-17 Score=158.24 Aligned_cols=219 Identities=12% Similarity=0.126 Sum_probs=200.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHHHHH
Q psy6082 27 ATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMV 106 (275)
Q Consensus 27 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~ 106 (275)
....+..|.++.+...++..++.+.....+.+..+++++++++++++.|+.||+..++|.++||+++|.+.++..+...+
T Consensus 857 ~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~ 936 (1381)
T KOG0054|consen 857 TSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTL 936 (1381)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHH
Confidence 34556677777777888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Q psy6082 107 FNIVPTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDS 186 (275)
Q Consensus 107 ~~~i~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 186 (275)
..++...+.+++.++++ ....|++.+.++.+.+++..+..++.+..++..+-....++...+++.|+
T Consensus 937 ~~~~~~~~~~l~~~~vi-------------~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Et 1003 (1381)
T KOG0054|consen 937 EFFLQSLLNVLGILVVI-------------SYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSET 1003 (1381)
T ss_pred HHHHHHHHHHHHHHHHh-------------hHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHH
Confidence 99999999999999999 89999999999999999999999999999999999999999999999999
Q ss_pred hcchHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhH
Q psy6082 187 LINYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQLLDCLLT 259 (275)
Q Consensus 187 l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~ltiG~ 259 (275)
++|..+||+|+.|+++.+++.+..+...+...-....+.+.....++++.+....+..+.......+ .+.|.
T Consensus 1004 l~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~-~~~g~ 1075 (1381)
T KOG0054|consen 1004 LQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSGL-ISPGL 1075 (1381)
T ss_pred hcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-CCcch
Confidence 9999999999999999999999999999999999999999999999998888777766666655544 44454
No 37
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.8e-15 Score=134.43 Aligned_cols=213 Identities=12% Similarity=0.045 Sum_probs=190.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHHHHHHHHH
Q psy6082 31 ILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIV 110 (275)
Q Consensus 31 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~i 110 (275)
.++.=.+.+...+..|..+...+....++..++|.++|+|+...+..-..+.++||+++|+..|++.+++.+...+.+.+
T Consensus 61 ~a~VR~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~ 140 (573)
T COG4987 61 SAGVRGLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAV 140 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHH
Confidence 34444556667999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccccccceeeechhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcc
Q psy6082 111 PTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSC-VGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLIN 189 (275)
Q Consensus 111 ~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~ 189 (275)
..++..++..+.+ .++||.+++.+... ....++++..+.+.-++..++..+..+.+.+.+.|.+.|
T Consensus 141 ~a~~~~~~~~i~L-------------~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G 207 (573)
T COG4987 141 VALVLIAVVTIGL-------------SFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQG 207 (573)
T ss_pred HHHHHHHHHHHHH-------------HHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhh
Confidence 9888888888888 88999988877665 444555677777888889999999999999999999999
Q ss_pred hHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccch
Q psy6082 190 YETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQLLDC 256 (275)
Q Consensus 190 i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt 256 (275)
..+.+.||+++.+.+.+++..+.+.+.+.|......+......++..+..+..+.+.+..+-.|..+
T Consensus 208 ~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~ 274 (573)
T COG4987 208 QAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALA 274 (573)
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcc
Confidence 9999999999999999999999999999999999999999999999999887777777777777766
No 38
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.76 E-value=4.8e-16 Score=158.50 Aligned_cols=185 Identities=10% Similarity=0.072 Sum_probs=157.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHHHHHHHHHHHHHHHHHH
Q psy6082 40 CSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELALI 119 (275)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~i~~~~~~i~~ 119 (275)
+..++.+++.++....+.+...+++.++++++++.|+.||++.++|++++|+++|++.+++.+...+..++..++.+++.
T Consensus 937 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~ 1016 (1490)
T TIGR01271 937 SVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGA 1016 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888888999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcchHHHHhhhch
Q psy6082 120 SSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNE 199 (275)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e 199 (275)
++++ ++.+|+++++++++.+++..+...+.+..++..+......+.+.+.+.|.++|+.+||+||.+
T Consensus 1017 l~~i-------------~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~ 1083 (1490)
T TIGR01271 1017 IFVV-------------SVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQ 1083 (1490)
T ss_pred HHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCc
Confidence 8888 888998877666666666666667777777778888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy6082 200 KFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKL 237 (275)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (275)
+.+.+++.+..++..+..........+......++..+
T Consensus 1084 ~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~i~~~ 1121 (1490)
T TIGR01271 1084 SYFETLFHKALNLHTANWFLYLSTLRWFQMRIDIIFVF 1121 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887766666666555655555554433
No 39
>PLN03130 ABC transporter C family member; Provisional
Probab=99.75 E-value=9.5e-16 Score=156.87 Aligned_cols=174 Identities=9% Similarity=0.042 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHHHHHHHHHH
Q psy6082 32 LGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVP 111 (275)
Q Consensus 32 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~i~ 111 (275)
+.++++.++..++.+++.++....+.+...++|.+++++++++|+.||+++++|++++|+++|++.++..+...+..++.
T Consensus 957 ~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~ 1036 (1622)
T PLN03130 957 LIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLG 1036 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677888888999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcchH
Q psy6082 112 TIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYE 191 (275)
Q Consensus 112 ~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~ 191 (275)
.++.+++.++++ ...+|...++++.+.+++..+...+.+..++..+......++..+.+.|+++|++
T Consensus 1037 ~~~~~i~~~i~i-------------~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~ 1103 (1622)
T PLN03130 1037 QIFQLLSTFVLI-------------GIVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLS 1103 (1622)
T ss_pred HHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHH
Confidence 888888888877 6667754444433333333444455566666666667788899999999999999
Q ss_pred HHHhhhchHHHHHHHHHHHHHHHHHHH
Q psy6082 192 TVKYFNNEKFEADRYEGVLKKYEQAAL 218 (275)
Q Consensus 192 ~ik~~~~e~~~~~~~~~~~~~~~~~~~ 218 (275)
+||+|+.++++.+++++..+...+...
T Consensus 1104 tIraf~~~~~f~~~~~~~~~~~~~~~~ 1130 (1622)
T PLN03130 1104 TIRAYKAYDRMAEINGRSMDNNIRFTL 1130 (1622)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988766666555555444433
No 40
>PLN03232 ABC transporter C family member; Provisional
Probab=99.72 E-value=4.4e-15 Score=151.71 Aligned_cols=212 Identities=11% Similarity=0.043 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHHHHHHHHHHHHHH
Q psy6082 36 IARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFE 115 (275)
Q Consensus 36 ~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~i~~~~~ 115 (275)
+..++..++.....+...+.+.++...++..+|+|.+++|..++++.++|++++++++|++.+++.. ..+..++..++.
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ 427 (1495)
T PLN03232 349 FGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIA-EQLHGLWSAPFR 427 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3334444444333444468888999999999999999999999999999999999999999999986 456666666666
Q ss_pred HHHHHHHhcccccccccccceeeechhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcchHH
Q psy6082 116 LALISSILSYKCGTLISSILSYKCGSEFSLLAVSC---VGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYET 192 (275)
Q Consensus 116 ~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ 192 (275)
++++++++ + +.+++..++. .++...+...+.++.++..++..+..++..+.+.|.++|+++
T Consensus 428 ii~~~~~l-------------~---~~lg~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~ 491 (1495)
T PLN03232 428 IIVSMVLL-------------Y---QQLGVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDT 491 (1495)
T ss_pred HHHHHHHH-------------H---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555555 2 2233332222 223333456677888999999999999999999999999999
Q ss_pred HHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHHHH
Q psy6082 193 VKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQLLDCLLTWQKQNFI 266 (275)
Q Consensus 193 ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~ltiG~~~~~~~~ 266 (275)
||.++.|+.+.+++++..++..+...+..........+..... ..+.++.+|++.+.+|.+|+|+...+..+
T Consensus 492 IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~fg~~~v~~~~lt~g~vf~~l~l 563 (1495)
T PLN03232 492 VKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIP--VVVTLVSFGVFVLLGGDLTPARAFTSLSL 563 (1495)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 9999999999999999888888877777766655444333222 22334678999999999999997665433
No 41
>PLN03232 ABC transporter C family member; Provisional
Probab=99.71 E-value=3e-15 Score=152.88 Aligned_cols=178 Identities=8% Similarity=0.056 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHHHHHHHH
Q psy6082 30 IILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNI 109 (275)
Q Consensus 30 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~ 109 (275)
.+..|+++.++..++.+++.+.....+.+...++|+++++++++.|+.||+++++|++++|+++|++.+++.+...+..+
T Consensus 952 ~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~ 1031 (1495)
T PLN03232 952 YIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMF 1031 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHH
Confidence 34556666666778888889999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcc
Q psy6082 110 VPTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLIN 189 (275)
Q Consensus 110 i~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~ 189 (275)
+..++.+++.++++ ...+|...++++.+.+++......+.+..++..+......+++.+.+.|.++|
T Consensus 1032 ~~~~~~~i~~~i~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G 1098 (1495)
T PLN03232 1032 MNQLWQLLSTFALI-------------GTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNG 1098 (1495)
T ss_pred HHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcC
Confidence 88888887777777 56665444333333333333333444555667777788889999999999999
Q ss_pred hHHHHhhhchHHHHHHHHHHHHHHHHHHHHH
Q psy6082 190 YETVKYFNNEKFEADRYEGVLKKYEQAALKT 220 (275)
Q Consensus 190 i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 220 (275)
+++||+||.++++.+++++..+...+.....
T Consensus 1099 ~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~ 1129 (1495)
T PLN03232 1099 LSSIRAYKAYDRMAKINGKSMDNNIRFTLAN 1129 (1495)
T ss_pred hHHHhcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999877776666655555544433
No 42
>PTZ00243 ABC transporter; Provisional
Probab=99.71 E-value=8.2e-15 Score=149.82 Aligned_cols=223 Identities=11% Similarity=0.032 Sum_probs=184.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHh--hcCCchhhhHhhcccchHHHH
Q psy6082 24 IASATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHL--NRQTGALSKIIDRGSRGINFV 101 (275)
Q Consensus 24 ~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~g~l~~~i~~d~~~i~~~ 101 (275)
+.....++++++++.++..++.....+...+.+.++...+...+|+|+++++..... +.++|++++.++.|++.+.++
T Consensus 281 ~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~ 360 (1560)
T PTZ00243 281 WGRGLGLVLTLFLTQLIQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSF 360 (1560)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHH
Confidence 333455566677777778888888888999999999999999999999999988876 568999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy6082 102 LSAMVFNIVPTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGN 181 (275)
Q Consensus 102 ~~~~~~~~i~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (275)
+.. +..++..++.++++++++ +..-.+.+++.++++++...+...+.++..+..++..+..++..+
T Consensus 361 ~~~-~~~l~~~Pl~li~~~~lL-------------~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~ 426 (1560)
T PTZ00243 361 MQY-CMYLWSSPMVLLLSILLL-------------SRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVK 426 (1560)
T ss_pred HHH-HHHHHHHHHHHHHHHHHH-------------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 854 556888888888888888 666666788888888888889999999999999999999999999
Q ss_pred HHHHhhcchHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhHHH
Q psy6082 182 KAIDSLINYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQLLDCLLTWQ 261 (275)
Q Consensus 182 ~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~ltiG~~~ 261 (275)
.+.|.++|++.||.++.|+.+.+++++..++..+...+..........+......+..++ .+++|.+..|.+|.|...
T Consensus 427 ~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~~~~~~~~~~p~l~~~~--~f~~y~~~g~~Lt~~~vf 504 (1560)
T PTZ00243 427 ATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVATSFVNNATPTLMIAV--VFTVYYLLGHELTPEVVF 504 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhCCCCCHHHHH
Confidence 999999999999999999999999999888777777776666666555555444444333 456788889999999864
Q ss_pred H
Q psy6082 262 K 262 (275)
Q Consensus 262 ~ 262 (275)
.
T Consensus 505 t 505 (1560)
T PTZ00243 505 P 505 (1560)
T ss_pred H
Confidence 3
No 43
>PLN03130 ABC transporter C family member; Provisional
Probab=99.71 E-value=8.8e-15 Score=149.88 Aligned_cols=196 Identities=13% Similarity=0.036 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q psy6082 52 FASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELALISSILSYKCGTLI 131 (275)
Q Consensus 52 ~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~i~~~~~~i~~~~~l~~~~~~~~ 131 (275)
..+++.++...++..+|+|.+++|...+++.++|++++++++|++.+++.+ ..+..++..++.++++++++
T Consensus 365 ~~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~-~~l~~l~~~pl~ii~~~~lL-------- 435 (1622)
T PLN03130 365 VMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQIC-QQLHTLWSAPFRIIIAMVLL-------- 435 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH--------
Confidence 457888899999999999999999999999999999999999999999987 44666777777776666665
Q ss_pred cccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcchHHHHhhhchHHHHHHHHHHHH
Q psy6082 132 SSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADRYEGVLK 211 (275)
Q Consensus 132 ~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~ 211 (275)
+..-...+++.++++++...+...+.++.++..++..+..++..+.+.|.++|+++||.|+.|+.+.+++++..+
T Consensus 436 -----~~~lg~~~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~ 510 (1622)
T PLN03130 436 -----YQQLGVASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRD 510 (1622)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 331112222222333445555667778888888899999999999999999999999999999999999988887
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHH
Q psy6082 212 KYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQLLDCLLTWQKQ 263 (275)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~ltiG~~~~~ 263 (275)
+..+...+..........+...... .+.++.+|++.+.+|.+|+|+...+
T Consensus 511 ~e~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~fg~~~~~~g~Lt~g~vf~~ 560 (1622)
T PLN03130 511 DELSWFRKAQLLSAFNSFILNSIPV--LVTVVSFGVFTLLGGDLTPARAFTS 560 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 7666666655555444433332221 3456678899999999999986544
No 44
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.67 E-value=5.9e-14 Score=143.36 Aligned_cols=216 Identities=10% Similarity=0.014 Sum_probs=172.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHHHHH
Q psy6082 27 ATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMV 106 (275)
Q Consensus 27 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~ 106 (275)
...++++++++.++..++.....+.....+.++...+...+|+|+++++...+++.++|++++++++|++.+...+...
T Consensus 121 ~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~- 199 (1490)
T TIGR01271 121 AYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALA- 199 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHH-
Confidence 3445556666666677777777888888999999999999999999999999999999999999999999999977544
Q ss_pred HHHHHHHHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Q psy6082 107 FNIVPTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDS 186 (275)
Q Consensus 107 ~~~i~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 186 (275)
..++..++.++++++++ +...++.+++.++++++++.+...+.++..+..++..+..++..+.+.|.
T Consensus 200 ~~~~~~pi~i~~~~~lL-------------~~~~G~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~ 266 (1490)
T TIGR01271 200 HFVWIAPLQVILLMGLI-------------WELLEVNGFCGLGFLILLALFQACLGQKMMPYRDKRAGKISERLAITSEI 266 (1490)
T ss_pred HHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666677777777777 66666778888888888888999999999999999999999999999999
Q ss_pred hcchHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhH
Q psy6082 187 LINYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQLLDCLLT 259 (275)
Q Consensus 187 l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~ltiG~ 259 (275)
++|+++||.++.|+.+.+++++..++..+...+..........+...... .+.++.+++|.+.++ +++|+
T Consensus 267 l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~--~~~~~~f~~y~~~~~-~~~~~ 336 (1490)
T TIGR01271 267 IENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGF--FVVFLSVVPYALIKG-IILRR 336 (1490)
T ss_pred HhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhCC-CcHHH
Confidence 99999999999999999999888888777777777665444444333332 234444556666555 45665
No 45
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.66 E-value=9e-14 Score=142.41 Aligned_cols=215 Identities=9% Similarity=0.009 Sum_probs=156.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHHHHHHH
Q psy6082 29 SIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFN 108 (275)
Q Consensus 29 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~ 108 (275)
.++++++++.++..++.....+...+.+.++...++..+|+|++++|...+++.++|+++++++.|++.+.... ..+..
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~-~~~~~ 437 (1522)
T TIGR00957 359 FYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLA-TYINM 437 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHH-HHHHH
Confidence 33444445555556666666677888999999999999999999999999999999999999999999998855 45666
Q ss_pred HHHHHHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhc
Q psy6082 109 IVPTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLI 188 (275)
Q Consensus 109 ~i~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~ 188 (275)
++..++.++++++++ +..-.+.+++.+++.++++.+...+.++.++..++..+..++..+.+.|.++
T Consensus 438 ~~~~~~~i~~~~~ll-------------~~~~g~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~ 504 (1522)
T TIGR00957 438 IWSAPLQVILALYFL-------------WLNLGPSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILN 504 (1522)
T ss_pred HHHHHHHHHHHHHHH-------------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666665555 3322233445555566677777788889999999999999999999999999
Q ss_pred chHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhc--ccchhhH
Q psy6082 189 NYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQ--LLDCLLT 259 (275)
Q Consensus 189 ~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~--g~ltiG~ 259 (275)
|+++||.++.|+.+.+++++..++..+...+................ ..+.++.++.+.+.. +.++.|.
T Consensus 505 ~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~f~~~~~~~~~~~l~~~~ 575 (1522)
T TIGR00957 505 GIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTP--FLVALITFAVYVTVDENNILDAEK 575 (1522)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCCCcCHHH
Confidence 99999999999999999998888777666555555443332211111 112223345566653 4566665
No 46
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.60 E-value=1.1e-13 Score=122.36 Aligned_cols=220 Identities=14% Similarity=0.048 Sum_probs=189.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHHHHHH
Q psy6082 28 TSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVF 107 (275)
Q Consensus 28 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~ 107 (275)
..+.+....+.++..++.+++.....+++.++..++..++|....+.+.. .+..|+=.+-+ +|.+++++++...-.
T Consensus 63 v~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~---~~~~g~~~Q~L-rDL~qvR~Fltg~g~ 138 (580)
T COG4618 63 VMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLL---RRGSGDGLQPL-RDLDQVRQFLTGTGL 138 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHh---hcCCCccccch-hhHHHHHHHHcCCCc
Confidence 33344444455566899999999999999999999999999998766553 45566555555 999999999987655
Q ss_pred HHHHHHHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhh
Q psy6082 108 NIVPTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSL 187 (275)
Q Consensus 108 ~~i~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l 187 (275)
..+.+.--+-+++.++ |.++|+++++.+++..+.+.+...-.+..++..++..+...+.+.......
T Consensus 139 ~A~fDaPW~P~yl~v~-------------fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~ 205 (580)
T COG4618 139 TAFFDAPWMPLYLAVI-------------FLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATL 205 (580)
T ss_pred chhcCCchHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHh
Confidence 5555555555677777 899999999999999999888888888888889999999999999999999
Q ss_pred cchHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHH
Q psy6082 188 INYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQLLDCLLTWQKQN 264 (275)
Q Consensus 188 ~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~ltiG~~~~~~ 264 (275)
.|.++|++.|..+...++|.+...++.+.+.+..-....+..+...+-......++.+|+|++.+|++|.|.+.+..
T Consensus 206 RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~S 282 (580)
T COG4618 206 RNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGS 282 (580)
T ss_pred hhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876544
No 47
>KOG0054|consensus
Probab=99.59 E-value=8.8e-13 Score=130.36 Aligned_cols=245 Identities=12% Similarity=0.046 Sum_probs=197.5
Q ss_pred hhhhcccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhh
Q psy6082 13 LLELTNATDALIASATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIID 92 (275)
Q Consensus 13 ~l~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~ 92 (275)
++...+++....+....+++++++..++..++.--..+...+++.++...+-..+|+|.++++...-.+.+.|+++|.++
T Consensus 227 li~~~~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms 306 (1381)
T KOG0054|consen 227 LILFFSEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMS 306 (1381)
T ss_pred HHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhh
Confidence 34444555556666777788888888888888888888899999999999999999999999998888899999999999
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6082 93 RGSRGINFVLSAMVFNIVPTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNM 172 (275)
Q Consensus 93 ~d~~~i~~~~~~~~~~~i~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~ 172 (275)
.|++.+.+... .+..+....+.+++++.++ +-.++|. +++.+++.++++.+.....++.++.+++.
T Consensus 307 ~D~~ri~~~~~-~~h~~w~~Plqi~~~l~lL------------y~~LG~s-a~~G~~~~il~~p~n~~~a~~~~~~q~~~ 372 (1381)
T KOG0054|consen 307 VDAQRLSDAAC-FLHLLWSAPLQIILALYLL------------YGLLGPS-ALAGVAVMVLLIPLNSFLAKKIAKFQKRL 372 (1381)
T ss_pred hhHHHHHHHHH-HHHHHHHHHHHHHHHHHHH------------HHHhChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999774 4666888888888888888 2333443 66666677788888999999999999999
Q ss_pred HHHHHhhhhHHHHhhcchHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy6082 173 NKAENEAGNKAIDSLINYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQ 252 (275)
Q Consensus 173 ~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~ 252 (275)
.+..++....++|.++||++||.|++|+.+.++.++..++..+.-.|.....+...........+..++.+..-.+ ...
T Consensus 373 m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~~~tF~~~v~-~~~ 451 (1381)
T KOG0054|consen 373 MKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLVSVVTFVVFVL-LLG 451 (1381)
T ss_pred hhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccC
Confidence 9999999999999999999999999999999999998888888888888888777777766666666555554443 445
Q ss_pred ccchhh----HHHHHHHHHhhhcc
Q psy6082 253 LLDCLL----TWQKQNFIRCTLTW 272 (275)
Q Consensus 253 g~ltiG----~~~~~~~~~~~~~~ 272 (275)
+.+|.. ....+|.++.++.+
T Consensus 452 ~~lt~~~aF~slalfniLr~pl~~ 475 (1381)
T KOG0054|consen 452 NLLTASTAFTSLALFNILRFPLFM 475 (1381)
T ss_pred ccccHhHHHHHHHHHHHHHHHHHH
Confidence 555552 24667777777765
No 48
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.49 E-value=1.3e-11 Score=106.42 Aligned_cols=184 Identities=11% Similarity=0.038 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6082 45 NELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELALISSILS 124 (275)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~i~~~~~~i~~~~~l~ 124 (275)
+.+.....+.+++....++|+++.+|++..|+..+++.+++.++.++++|++.+. +-...++.+.+.++..+++.+++
T Consensus 65 s~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~IS-f~~s~lp~~~qa~il~l~s~aYL- 142 (546)
T COG4615 65 SLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNIS-FAFSRLPELVQAIILTLGSAAYL- 142 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhccccccee-ehHhhhHHHHHHHHHHHHHHHHH-
Confidence 3555666778899999999999999999999999999999999999999999999 44456777899999999999999
Q ss_pred ccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcchHHHHhhhch--HHH
Q psy6082 125 YKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNE--KFE 202 (275)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e--~~~ 202 (275)
.+.||++.++.++++.+..+.......+..+..+..++.++++.+..+..++|.|+.+..... ...
T Consensus 143 ------------ayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h 210 (546)
T COG4615 143 ------------AYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVH 210 (546)
T ss_pred ------------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987543 334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy6082 203 ADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLV 242 (275)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (275)
.+++.+..+.+++..............+.+++......++
T Consensus 211 ~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlv 250 (546)
T COG4615 211 NNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLV 250 (546)
T ss_pred hhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555333333333233344444444444444
No 49
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=99.21 E-value=4.2e-08 Score=83.99 Aligned_cols=202 Identities=13% Similarity=0.069 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHh-hc---CCchhhhHhhcccchHHHHHHHHHHH
Q psy6082 33 GYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHL-NR---QTGALSKIIDRGSRGINFVLSAMVFN 108 (275)
Q Consensus 33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~-~~---~~g~l~~~i~~d~~~i~~~~~~~~~~ 108 (275)
.++++.+...++.....++...++.+....+-+.+.++.++-. .||+ +. ...+-=+|+++|++...+........
T Consensus 71 ~~~~l~~~~~~l~~~~~yl~~~L~l~wR~~Lt~~~~~~yl~~~-~yY~l~~~~~~idNpDQRIteDi~~f~~~~~~l~~~ 149 (281)
T PF06472_consen 71 LFLLLAIASALLNSILKYLRQRLALRWREWLTRHLHDRYLSNR-TYYRLNNLDGRIDNPDQRITEDIRKFTESSLSLFLG 149 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-hhHhhhccccccccHhhHHHHHHHHHHHHHHHHHHH
Confidence 3334444446666777777777888888888888888877766 5655 22 23456679999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccccccccceeeechhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhh
Q psy6082 109 IVPTIFELALISSILSYKCGTLISSILSYKCGSEFSL-LAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSL 187 (275)
Q Consensus 109 ~i~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~l-i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l 187 (275)
++..++.++.....+ ...++..+. ++++..++...+...+++...+...+.++.+++.-.......
T Consensus 150 ~~~~~~~l~~f~~~L-------------~~~~g~~~~~~~~~y~~~~t~~~~~ig~~l~~l~~~~q~~Ea~fR~~l~r~r 216 (281)
T PF06472_consen 150 LLKPILDLISFSVIL-------------WSISGWLGPWAALIYAILGTLITHWIGPPLGRLNAEQQRLEADFRYALVRLR 216 (281)
T ss_pred HHHHHHHHHHHHHHH-------------HhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchHHHHHHHHH
Confidence 999999998888888 777777776 777778888899999999999999999999999999999999
Q ss_pred cchHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHhhh
Q psy6082 188 INYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAI-GKLMLTLVLNLQSF 248 (275)
Q Consensus 188 ~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~g~~ 248 (275)
+|-++|-.++.|+.|.++.++..++..+...+....+...+...... ..+..++...+.+.
T Consensus 217 ~naE~IA~~~Ge~~E~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~p 278 (281)
T PF06472_consen 217 ENAESIAFYRGESRERRRLDRRFDALIDNWRRLIRRRLRLGFFTNFYVKYLSSILPYLVVAP 278 (281)
T ss_pred HhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998888888887 66666666655543
No 50
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.16 E-value=4.4e-08 Score=90.17 Aligned_cols=232 Identities=13% Similarity=0.075 Sum_probs=182.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCc------hhhhHhhcccchHHHHHHHHHHHHHHHHH
Q psy6082 41 SSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTG------ALSKIIDRGSRGINFVLSAMVFNIVPTIF 114 (275)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g------~l~~~i~~d~~~i~~~~~~~~~~~i~~~~ 114 (275)
.-.+...+.++...+..+...-+.+.+.++-+... .+|.-...| .-=+|+.+|+....+........++.+++
T Consensus 99 ~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~-~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~i 177 (604)
T COG4178 99 LVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPR-RYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVI 177 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34455667888888888888888888888888877 555444443 23478999999888888888888888888
Q ss_pred HHHHHHHHhccccccccc--ccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcchHH
Q psy6082 115 ELALISSILSYKCGTLIS--SILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYET 192 (275)
Q Consensus 115 ~~i~~~~~l~~~~~~~~~--~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ 192 (275)
+++...+++-.-.|.+-- .+..+.+...+...+++.++...++..+++|...+.+.+..+.++++-..+...-++.+.
T Consensus 178 slisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~ 257 (604)
T COG4178 178 SLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEA 257 (604)
T ss_pred HHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHH
Confidence 887777776111111000 001134555666666777777888888999999999999999999999999999999999
Q ss_pred HHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhHHHH----HHHHHh
Q psy6082 193 VKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQLLDCLLTWQK----QNFIRC 268 (275)
Q Consensus 193 ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~ltiG~~~~----~~~~~~ 268 (275)
|-.++.|+.|.++.++......+...+...........+...+.+..++.+..++-....|.++.|++++ ++-..-
T Consensus 258 IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmqa~~aF~~v~s 337 (604)
T COG4178 258 IALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQAVGAFGQVHS 337 (604)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999744 444455
Q ss_pred hhccc
Q psy6082 269 TLTWA 273 (275)
Q Consensus 269 ~~~~~ 273 (275)
.++|-
T Consensus 338 slswf 342 (604)
T COG4178 338 SLSWF 342 (604)
T ss_pred HHHHH
Confidence 55553
No 51
>PRK11098 microcin B17 transporter; Reviewed
Probab=99.03 E-value=5.9e-07 Score=79.85 Aligned_cols=201 Identities=8% Similarity=-0.005 Sum_probs=146.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHHHHHHHHHHHHHH
Q psy6082 36 IARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFE 115 (275)
Q Consensus 36 ~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~i~~~~~ 115 (275)
.+.++...+..+..++..+...+...-+-+...++-++.+ +...--+|+.+|++...+........++.++++
T Consensus 146 ~i~~~~v~l~v~~~~~~~~l~irWR~wLT~~yl~~Wl~~r-------~ienPDQRIqEDi~~F~~~tl~L~~~li~si~t 218 (409)
T PRK11098 146 GIALIAVVISVLNNFFVSHYVFRWRTAMNEYYMAHWQKLR-------HIEGAAQRVQEDTMRFASTLENLGVSFINAIMT 218 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334555566666666677766666666666655443 112246899999999998888888889999998
Q ss_pred HHHHHHHhcccccccccccceeeechh-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q psy6082 116 LALISSILSYKCGTLISSILSYKCGSE-------------FSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNK 182 (275)
Q Consensus 116 ~i~~~~~l~~~~~~~~~~~~~~~~~~~-------------l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (275)
++..+.++ ..+|.. +..++++..++...+....++++.+.+-+.++.+++.-..
T Consensus 219 LisF~~IL-------------W~LS~~l~~~~i~G~ipg~Lv~~aiiyai~GT~it~~vG~~L~~Lnf~qqr~EAdFR~~ 285 (409)
T PRK11098 219 LIAFLPVL-------------VTLSAHVPELPIVGHIPYGLVIAAIVWSLFGTGLLAVVGIKLPGLEFKNQRVEAAYRKE 285 (409)
T ss_pred HHHHHHHH-------------HHhccccccccccCCCchHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHH
Confidence 88888887 444433 4556666677788888889999998888888888887655
Q ss_pred HHHhhcchHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhHHHH
Q psy6082 183 AIDSLINYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQLLDCLLTWQK 262 (275)
Q Consensus 183 ~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~ltiG~~~~ 262 (275)
+.-.=+|- |+.|.++.++..++..+...+........+........+..++...+.+-....|++|+|.+++
T Consensus 286 LVrvrena--------E~~E~~~L~~~F~~V~~N~~rl~~~~~~l~~f~~~y~~~~~i~P~iv~aP~y~aG~ItlG~l~Q 357 (409)
T PRK11098 286 LVYGEDDA--------DRATPPTVRELFSNVRKNYFRLYFHYMYFNIARILYLQVDNVFGLFLLFPSIVAGTITLGLMTQ 357 (409)
T ss_pred HhHhhhhh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHHHH
Confidence 44333333 3556677777777888888877777777788888888888888888889999999999999866
Q ss_pred HH
Q psy6082 263 QN 264 (275)
Q Consensus 263 ~~ 264 (275)
..
T Consensus 358 ~~ 359 (409)
T PRK11098 358 IT 359 (409)
T ss_pred HH
Confidence 54
No 52
>PRK12369 putative transporter; Reviewed
Probab=99.00 E-value=7e-07 Score=77.61 Aligned_cols=225 Identities=8% Similarity=-0.021 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHHHHHHHHHHHH
Q psy6082 34 YGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTI 113 (275)
Q Consensus 34 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~i~~~ 113 (275)
+.++.+....+.....++..++..+...-+-+++.++-+..+- . .-.-=+|+.+|++...+........++.++
T Consensus 69 f~~~~~~~v~~~v~~~~~~~~l~i~WR~wLT~~~l~~wl~~~~-~-----iDNPDQRI~EDi~~f~~~tl~l~~~~i~s~ 142 (326)
T PRK12369 69 FLAIAMPYVLIATVVDYFASHYAFRWREAMTFSYLKFWRNKRD-N-----IEGSSQRIQEDTYRFAKIMESLGLSFLRAI 142 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-C-----CCCccHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334455556677777777777777777777777766331 1 112237999999999998888888999999
Q ss_pred HHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcchHHH
Q psy6082 114 FELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETV 193 (275)
Q Consensus 114 ~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~i 193 (275)
++++....++-...|++--... -.+...+...+++..++...++...++++.+..-+.++.+++.-..+.-.=++-+.
T Consensus 143 ~~l~sF~~iLW~lS~~l~~~~~-g~ipg~lv~~aiiyai~gt~it~~iGr~L~~ln~~qq~~EAdFR~~Lvrvre~ae~- 220 (326)
T PRK12369 143 MTLIAFIPILWGLSDGVSLPFL-KDIPGSLVWIALLISLGGLVISWFVGIKLPGLEYNNQKVEAAFRKELVYAEDDKKN- 220 (326)
T ss_pred HHHHHHHHHHHHhCCCceeeec-CCCcchHHHHHHHHHHHHHHHHHHHcCcCchhhHHHHHHHHHHHHHHHhhccchhh-
Confidence 9888877777111111100000 01223444555666777778888899998888888888887776443332111111
Q ss_pred HhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHH----HHHhh
Q psy6082 194 KYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQLLDCLLTWQKQN----FIRCT 269 (275)
Q Consensus 194 k~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~ltiG~~~~~~----~~~~~ 269 (275)
+ .|.++.++..++..+...+........+........+..++...+.+.....|.+++|++++.. -.+-.
T Consensus 221 --~----~E~~~l~~~f~~v~~n~~~~~~~~~~l~~~~~~y~~~~~i~p~li~aP~y~sg~i~lG~l~Q~~~AF~~v~~a 294 (326)
T PRK12369 221 --Y----AKPETLIELFTGLRFNYFRLFLHYGYFNIWLISFSQMMVIVPYLIMAPGLFAGVITLGVLMQISNAFSQVRSS 294 (326)
T ss_pred --h----hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHH
Confidence 1 4446777777777777777777777777777778888888888888999999999999986544 34444
Q ss_pred hcc
Q psy6082 270 LTW 272 (275)
Q Consensus 270 ~~~ 272 (275)
++|
T Consensus 295 ls~ 297 (326)
T PRK12369 295 FSV 297 (326)
T ss_pred HHH
Confidence 444
No 53
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=98.52 E-value=9.8e-05 Score=60.25 Aligned_cols=167 Identities=8% Similarity=0.038 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHHHHHHHHHHH
Q psy6082 33 GYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPT 112 (275)
Q Consensus 33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~i~~ 112 (275)
.|+++.++..+....++...+++-.++..++...+..+-. .++.+++.+..|+ .-+++..+++...++.++.+
T Consensus 50 ~~~~~~l~~~~igaaRR~~DTRvf~rIy~~la~~vi~~qr------~~~~~~S~i~ARv-~lsRE~VdFfE~~lP~lits 122 (237)
T PF13748_consen 50 MYAALVLLMWAIGAARRIYDTRVFSRIYAELAVPVILSQR------QQGLSVSTIAARV-ALSREFVDFFEQHLPTLITS 122 (237)
T ss_pred HHHHHHHHHHHHhhhhHHHhhHHHHHHHHHHhHHHHHHHH------HhCCChhHHHHHH-HHHHHHHHHHHHHhHHHHHH
Confidence 3344444445566677777777777777777776555432 3567888999999 44888889999999999999
Q ss_pred HHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcchHH
Q psy6082 113 IFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYET 192 (275)
Q Consensus 113 ~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ 192 (275)
+++++++.+++ +.++++.++..++...+...+...+.++..+.+.+.++..++-.+.+..
T Consensus 123 ~vsivga~vmL-------------l~~e~~~g~~~l~~l~~~~~i~~~f~~~~~~L~~~LNnrlE~eV~~i~~------- 182 (237)
T PF13748_consen 123 VVSIVGAAVML-------------LVFEFWLGLACLLILALFLLILPRFARRNYRLYRRLNNRLEKEVDIIER------- 182 (237)
T ss_pred HHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHhhc-------
Confidence 99999999999 9999999999999988888888888888877777766555433322221
Q ss_pred HHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy6082 193 VKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAI 234 (275)
Q Consensus 193 ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (275)
.......+..+...+-..+.....+.......+.
T Consensus 183 --------~~~~~l~rHy~~L~~lrI~lSD~EA~~y~~i~i~ 216 (237)
T PF13748_consen 183 --------RKPASLRRHYRRLSRLRIRLSDREALGYLLIGIV 216 (237)
T ss_pred --------CChHHHHHHHHHHHhhhhhhchHHHHHHHHHHHH
Confidence 1223344445555555555555555555544443
No 54
>PF05992 SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009248 The Rhizobium meliloti (Sinorhizobium meliloti) bacA gene encodes a function that is essential for bacterial differentiation into bacteroids within plant cells in the symbiosis between R. meliloti and alfalfa. An Escherichia coli homologue of BacA, SbmA, is implicated in the uptake of microcins and bleomycin. This family is likely to be a subfamily of the ABC transporter family.; GO: 0005215 transporter activity, 0006810 transport, 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=98.19 E-value=0.003 Score=53.92 Aligned_cols=207 Identities=9% Similarity=-0.016 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6082 43 GFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELALISSI 122 (275)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~i~~~~~~i~~~~~ 122 (275)
++..+..+.......|....+-+..+++=.+. ++.---.+|+..|+......+......++.++.+++..+.+
T Consensus 71 ~~~v~~~ff~shyiFrWR~Am~~yY~~~W~~~-------r~IEGASQRIQEDtmrfa~i~E~Lgv~~i~simtliaFlPi 143 (315)
T PF05992_consen 71 VLAVLNSFFVSHYIFRWRTAMNEYYMSHWPKL-------RHIEGASQRIQEDTMRFAKIMEDLGVSFIRSIMTLIAFLPI 143 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-------ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555665555555555543332 23334478999999999999988888899888888777666
Q ss_pred hcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcchHHHHhhhchHHH
Q psy6082 123 LSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFE 202 (275)
Q Consensus 123 l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~ 202 (275)
+-...+|.-.--.+--+.-.+...+++......++....+.|+....-+.++.++..-+ |.+-|=+. .-....+.
T Consensus 144 L~~lS~~V~~lp~~g~i~~~Lv~~ai~~s~~gt~~l~~vGikLPgLe~~nQkvEAAyRK---eLV~gED~-~~ra~~~t- 218 (315)
T PF05992_consen 144 LWELSSHVSELPFFGEIPHSLVWAAIIWSLFGTILLAFVGIKLPGLEFNNQKVEAAYRK---ELVYGEDD-ANRAQPPT- 218 (315)
T ss_pred HHHHhccCCcCcccCCCchHHHHHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHHH---HHHhcCcc-cccCCchh-
Confidence 62212221100011122233444455556666777777788877777666666666653 22222222 11122222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHH
Q psy6082 203 ADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQLLDCLLTWQKQN 264 (275)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~ltiG~~~~~~ 264 (275)
.++...+.++...+........+........+..+....+.+--+..|.+|+|.++++.
T Consensus 219 ---l~eLF~~Vr~Ny~rly~hy~yfni~~~~y~q~~~i~~~i~l~Psi~ag~iTLG~~~Qi~ 277 (315)
T PF05992_consen 219 ---LRELFSNVRRNYFRLYFHYMYFNIARISYLQFDVIFPYIILIPSIVAGAITLGVLQQIS 277 (315)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 44445555555555555555556666666666777777778888899999999987653
No 55
>KOG0060|consensus
Probab=97.95 E-value=0.00025 Score=64.83 Aligned_cols=197 Identities=13% Similarity=0.064 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchh----hhHhhcccchHHHHHHHHHHHHHHHHHHHHH
Q psy6082 43 GFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGAL----SKIIDRGSRGINFVLSAMVFNIVPTIFELAL 118 (275)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l----~~~i~~d~~~i~~~~~~~~~~~i~~~~~~i~ 118 (275)
.++.+..+...-+..+...++-+-++++.++- ..||.=.+.++. =+|+++|++.....+.+...+++..++.++.
T Consensus 137 ~~~a~~ky~~~~L~Lr~R~~ltk~lh~~Y~k~-~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~~a~~di~~ 215 (659)
T KOG0060|consen 137 LLNALLKFTTNELYLRFRKNLTKYLHRLYFKG-FTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLLKAPFDLVY 215 (659)
T ss_pred HHHHHHHHHHhhhHhHHHHHHHHHHHHHHhcc-ceEEEecccccccCChHHHHhHHHHHHHHHHHHHHHhhhccceeeeh
Confidence 33444444455555555555555555554432 233322222221 2678888888888887777777777777666
Q ss_pred HHHHhcccccccccccceeee-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcchHHHHhhh
Q psy6082 119 ISSILSYKCGTLISSILSYKC-GSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFN 197 (275)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~-~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~ 197 (275)
...-+ +.. +|+--..++.-+.+..++.+.+.+.+.+...+..+.+++.--.-.+...|-++|--|+
T Consensus 216 Y~~~l-------------~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfRy~h~rlr~NaE~iAFY~ 282 (659)
T KOG0060|consen 216 YTFRL-------------FESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFRYKHSRLRVNAEEIAFYR 282 (659)
T ss_pred hhhHH-------------hhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchhhheeeeeecchhhhhhc
Confidence 65555 333 3443333444455567777888888888888888999999888889999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q psy6082 198 NEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQL 253 (275)
Q Consensus 198 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g 253 (275)
.++.|..+..+..+...+...+.....-+...+.+.+..+..++...+-+.-+..|
T Consensus 283 g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~ 338 (659)
T KOG0060|consen 283 GGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSG 338 (659)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecc
Confidence 99999999999999999999999999999999998888777776666555554444
No 56
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=97.34 E-value=0.066 Score=44.29 Aligned_cols=187 Identities=12% Similarity=0.050 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CChhhHhhcCCchhhhHhhcccchHHHHHHH
Q psy6082 29 SIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHN----LDLAFHLNRQTGALSKIIDRGSRGINFVLSA 104 (275)
Q Consensus 29 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~----~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~ 104 (275)
.+++...+.........+.......+...++..++.+++.+.-.+ .+.+...++=+.|.-+ +.+ .+...+..
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~l~~~i~~d~~~-i~~---~~~~~~~~ 121 (275)
T PF00664_consen 46 LLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLFEKLLRLPYSYFDKNSSGELLSRITNDIEQ-IEN---FLSSSLFQ 121 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHS-HHHHHHHHHHHHHH-HHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccc-ccc---cccccccc
Confidence 333333344444444445556666666666666666666555444 6776666554434322 211 22333334
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q psy6082 105 MVFNIVPTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAI 184 (275)
Q Consensus 105 ~~~~~i~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (275)
.+..++..+..++....+- ........+...+..++.....+...+..++..++..+ ..+......
T Consensus 122 ~~~~~~~~i~~~~~~~~~~-------------~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l 187 (275)
T PF00664_consen 122 IISSIISIIFSLILLFFIS-------------WKLALILLIILPLLFLISFIFSKKIRKLSKKYQEANSE-LNSFLSESL 187 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHT-------------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred cccccchhhhhhhcccccc-------------cccccccchhhhhhHhhhhhhccccccccccccccccc-cccccccch
Confidence 4444444444333333333 44444444444455555555555555555555555444 334444555
Q ss_pred HhhcchHHHHhhhchHHHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy6082 185 DSLINYETVKYFNNEKFEADR-YEGVLKKYEQAALKTSTSLATLNFGQSA 233 (275)
Q Consensus 185 e~l~~i~~ik~~~~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (275)
+.+.-+|.-..-+.+....++ .++..+...+..............+...
T Consensus 188 ~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (275)
T PF00664_consen 188 SGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYL 237 (275)
T ss_dssp HTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666655433333 3334444444444444444444444444
No 57
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.82 E-value=5.2e-05 Score=72.21 Aligned_cols=115 Identities=8% Similarity=-0.070 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcchHHHHhhhchHHHHHHH-----HHHHHHHHHHHH
Q psy6082 144 SLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADRY-----EGVLKKYEQAAL 218 (275)
Q Consensus 144 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~-----~~~~~~~~~~~~ 218 (275)
++++++.++++++......+..++.............+.+.|.+.++.+||..+.|+.....| .+...+..+...
T Consensus 7 ~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ev~~~~~tIK~~~~e~~~~~~~~~~~~~~l~~~l~~~~v 86 (644)
T PRK10733 7 LWLVIAVVLMSVFQSFGPSESNGRKVDYSTFLQEVNQDQVREARINGREINVTKKDSNRYTTYIPVNDPKLLDNLLTKNV 86 (644)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHcCCeEEEEEeCCEEEEEEcCCceEEEeCCCCCHHHHHHHHHcCC
Confidence 333444444443333333333334444444555667788999999999999999987766666 566666666666
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhh
Q psy6082 219 KTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQLLDCLL 258 (275)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~ltiG 258 (275)
+..........+...+......+++++|++++..|.++.|
T Consensus 87 ~~~~~~~~~~~~~~~i~~~~~~~il~ig~~~v~~g~mt~G 126 (644)
T PRK10733 87 KVVGEPPEEPSLLASIFISWFPMLLLIGVWIFFMRQMQGG 126 (644)
T ss_pred eEEecCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 6666666666666666777788888999999999999998
No 58
>KOG0064|consensus
Probab=96.77 E-value=0.4 Score=44.24 Aligned_cols=183 Identities=9% Similarity=0.019 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcC-Cch---hhhHhhcccchHHHHHHHHHHHHHHHHHHHH
Q psy6082 42 SGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQ-TGA---LSKIIDRGSRGINFVLSAMVFNIVPTIFELA 117 (275)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~-~g~---l~~~i~~d~~~i~~~~~~~~~~~i~~~~~~i 117 (275)
...+..-+++..+++.....++-+..++..+... .||.-.+ -|. .=+++++|+....+...+...++...++-++
T Consensus 171 tFvNS~Iryle~klaLafrtrL~~h~y~~Y~snq-TyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~ 249 (728)
T KOG0064|consen 171 SFVNSAIRYLESKLALAFRTRLTRHAYDMYLSNQ-TFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLI 249 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-ceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 3344444555566666666667777777666554 4543211 121 2245778888877777777777777777666
Q ss_pred HHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcchHHHHhhh
Q psy6082 118 LISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFN 197 (275)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~ 197 (275)
+....+-..++. ...++.. +..+.+.+...+.+.++++..+...+.....+.+...=+..++|-++|-.|+
T Consensus 250 l~s~~L~~s~~s-------~g~~~~~--~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~ 320 (728)
T KOG0064|consen 250 LISFTLLDSATS-------VGAAGIT--LAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYG 320 (728)
T ss_pred HHHHHHHhhhcc-------ccccchh--hhhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhc
Confidence 666655222222 1111111 2222333344566667777777777777778888888889999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy6082 198 NEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAI 234 (275)
Q Consensus 198 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (275)
..+.|.++.++..+...+......+...+...+-+++
T Consensus 321 GhkvE~~ql~~sy~~L~~qm~li~k~r~~YiMleqF~ 357 (728)
T KOG0064|consen 321 GHKVELTQVDESYNRLVEQMNLIFKVRLWYIMLEQFV 357 (728)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888877776666666665555543
No 59
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=96.40 E-value=1 Score=43.53 Aligned_cols=138 Identities=9% Similarity=-0.055 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCch----hhhHhhcccchHHHHHHHHH
Q psy6082 31 ILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGA----LSKIIDRGSRGINFVLSAMV 106 (275)
Q Consensus 31 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~----l~~~i~~d~~~i~~~~~~~~ 106 (275)
++.++++.+...+++.+..++......+ +|+++.+++.+..+..+...+... .-+..++-.++++.+- ...
T Consensus 138 l~~~~l~~~~~~~~~~~~~~~~~~~~~~----~r~~l~~~l~~~~~~~~~~~~~~~~d~~~g~~~srlt~Dv~~i~-~~~ 212 (659)
T TIGR00954 138 LFKWFLIAPPASFINSAIKYLLKELKLR----FRVRLTRYLYSKYLSGFTFYKVSNLDSRIQNPDQLLTQDVEKFC-DSV 212 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhCCCceEEeccCCCCCCCccccHHHHHHHHH-HHH
Confidence 3444445555566666666665555554 455555554444444444333322 3333333344444433 333
Q ss_pred HHHHHHHHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q psy6082 107 FNIVPTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAID 185 (275)
Q Consensus 107 ~~~i~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 185 (275)
...+..++..++.++.. .......+.....+++.++..+.....+...+...+..+...+..+.+..
T Consensus 213 ~~~~~~l~~~~~~ii~~------------~~~L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 279 (659)
T TIGR00954 213 VELYSNLTKPILDVILY------------SFKLLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRY 279 (659)
T ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHH
Confidence 34444444444443332 02233234455555555666666666666666555555555554444443
No 60
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=96.34 E-value=1.1 Score=43.55 Aligned_cols=159 Identities=8% Similarity=0.014 Sum_probs=73.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhCChhhHhhcCCchhhhHhhcccchHHH
Q psy6082 25 ASATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLH----LHNLDLAFHLNRQTGALSKIIDRGSRGINF 100 (275)
Q Consensus 25 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~----ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~ 100 (275)
.....+++..++..++..+-.+...+...+...++..++-+++++. ..+.+.....++=+.|+. .+.+ .+..
T Consensus 202 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~-~i~~---~~~~ 277 (711)
T TIGR00958 202 SAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQ-TMSR---SLSL 277 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHH-HHHH---HHHH
Confidence 3334444444445555566666667777777777777777777654 344555555544333332 2211 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy6082 101 VLSAMVFNIVPTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAG 180 (275)
Q Consensus 101 ~~~~~~~~~i~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (275)
.+...+..++..+..++..+.+- ........+...+...+.........+..++..+...+..+. .
T Consensus 278 ~~~~~l~~~~~~i~~~~~l~~~s-------------~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 343 (711)
T TIGR00958 278 NVNVLLRNLVMLLGLLGFMLWLS-------------PRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQV-A 343 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 23233333333332222222222 222233233333333344445555544444444444443333 3
Q ss_pred hHHHHhhcchHHHHhhhchHH
Q psy6082 181 NKAIDSLINYETVKYFNNEKF 201 (275)
Q Consensus 181 ~~~~e~l~~i~~ik~~~~e~~ 201 (275)
....+.+..++.-..-..+..
T Consensus 344 ~e~l~g~~~Ik~~~~e~~~~~ 364 (711)
T TIGR00958 344 EEALSGMRTVRSFAAEEGEAS 364 (711)
T ss_pred HHHHcChHHHHHhcccHHHHH
Confidence 444566666766666655433
No 61
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=96.20 E-value=1.1 Score=41.96 Aligned_cols=65 Identities=9% Similarity=-0.034 Sum_probs=41.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhCChhhHhhcCCchh
Q psy6082 23 LIASATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLH----LHNLDLAFHLNRQTGAL 87 (275)
Q Consensus 23 ~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~----ll~~~~~~~~~~~~g~l 87 (275)
.......+++.+++..++..+-.+.......+...++..++-+++.+. ..+.+.....++-..|+
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di 111 (529)
T TIGR02857 43 LLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVAALGPGWLQGRPSGELATLALEGV 111 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCChHHHHHHHHhhH
Confidence 344444455555555666777778888888888888888887777653 34455555554433333
No 62
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=95.65 E-value=2.3 Score=41.27 Aligned_cols=187 Identities=5% Similarity=-0.112 Sum_probs=85.4
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCChhhHhhcCCchhhhHhhcccchHH
Q psy6082 23 LIASATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHL---HNLDLAFHLNRQTGALSKIIDRGSRGIN 99 (275)
Q Consensus 23 ~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l---l~~~~~~~~~~~~g~l~~~i~~d~~~i~ 99 (275)
.+.....+++.+++..++..+-+++......++..++..++-+++++.= .+.+.....++ ..+ .+.+.+ .+.
T Consensus 186 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~G~~~~r-~~d-~~~i~~---~~~ 260 (694)
T TIGR03375 186 LWVLAIGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGLRMEARPASVGSFANQ-LRE-FESVRD---FFT 260 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhHHHHH-HHH-HHHHHH---HHh
Confidence 3444444444455555666777788888888888888888888877532 23343443332 122 223322 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy6082 100 FVLSAMVFNIVPTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEA 179 (275)
Q Consensus 100 ~~~~~~~~~~i~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (275)
......+..++..++.++..+.+- ........+.+.+..++.........+..++..+...+..+..
T Consensus 261 ~~~~~~~~~~~~~~~~~~~l~~~~-------------~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (694)
T TIGR03375 261 SATLTALIDLPFALLFLLVIAIIG-------------GPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVL 327 (694)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222223333333332222222222 2222222233333344444555555555555554444444444
Q ss_pred hhHHHHhhcchHHHHhhhch-HHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy6082 180 GNKAIDSLINYETVKYFNNE-KFEADRYEGVLKKYEQAALKTSTSLATLN 228 (275)
Q Consensus 180 ~~~~~e~l~~i~~ik~~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (275)
. ...+.+..++.-..-..+ +...+.+++..+...+.............
T Consensus 328 ~-e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (694)
T TIGR03375 328 V-ESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQ 376 (694)
T ss_pred H-HHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 344556666655444433 33334444444444444444443333333
No 63
>COG1133 SbmA ABC-type long-chain fatty acid transport system, fused permease and ATPase components [Lipid metabolism]
Probab=95.37 E-value=1.5 Score=37.40 Aligned_cols=230 Identities=8% Similarity=-0.052 Sum_probs=112.4
Q ss_pred cchhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchH
Q psy6082 19 ATDALIASATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGI 98 (275)
Q Consensus 19 ~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i 98 (275)
++.-..+-....++.+..+.+.......+..++......|....+..-..++=.+ .++...-.+|+..|.-+.
T Consensus 125 ~~~~t~~~fY~~~~vF~~IA~~~v~i~vln~ffvShyiFrWRtAMn~~ym~~W~k-------lrhIEGasQRvQEDTmrF 197 (405)
T COG1133 125 PPKVTAGQFYSLVGVFLGIALIAVVISVLNNFFVSHYIFRWRTAMNEYYMANWQK-------LRHIEGASQRVQEDTMRF 197 (405)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHhhhh-------hccccchHHHHHHHHHHH
Confidence 3333344444555556556666666667777777777777655555555444322 223334568899998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccc-ceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6082 99 NFVLSAMVFNIVPTIFELALISSILSYKCGTLISSI-LSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAEN 177 (275)
Q Consensus 99 ~~~~~~~~~~~i~~~~~~i~~~~~l~~~~~~~~~~~-~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (275)
...+.+.-..++.++.+++..+-++-+-..|. |-. ..-.++-.+....++............+-|+-...-+.++.++
T Consensus 198 SstlE~LGvsfi~siMTLiaFlPvL~~ls~~V-s~Lpiig~ip~~Lv~aAi~wslfGtv~la~vGIKLPGLef~NQrvEA 276 (405)
T COG1133 198 SSTLENLGVSFINAIMTLIAFLPVLFTLSAHV-SELPIIGHIPHALVWAAIVWSLFGTVLLAVVGIKLPGLEFRNQRVEA 276 (405)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc-ccCcccccCchHHHHHHHHHHHhchHHHHhhhccCCCcccccHHHHH
Confidence 88887777778888887777666661100000 000 0011122233333444444444444444443333222222222
Q ss_pred hhhhHHHHhhcchHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchh
Q psy6082 178 EAGNKAIDSLINYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQLLDCL 257 (275)
Q Consensus 178 ~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lti 257 (275)
..- .|.+-|=+. +-...-....+-|.+..+.+.+....+...+-..-...+ .-.+..+.+-+--+..|++|+
T Consensus 277 AyR---KELVYgEDh-~drA~p~T~~ELf~nvr~NYfRLyfHY~YFNiari~ylQ----~dnif~llil~PsivAgkitl 348 (405)
T COG1133 277 AYR---KELVYGEDH-ADRATPPTVRELFSNVRKNYFRLYFHYMYFNIARILYLQ----VDNIFGLLILFPSIVAGKITL 348 (405)
T ss_pred HHH---hhhhccCCc-hhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhHHHhchhhH
Confidence 221 122211111 111122223344445555555555444444333222222 222333344445567899999
Q ss_pred hHHHHHH
Q psy6082 258 LTWQKQN 264 (275)
Q Consensus 258 G~~~~~~ 264 (275)
|-+++++
T Consensus 349 G~~~QI~ 355 (405)
T COG1133 349 GLMTQIT 355 (405)
T ss_pred HHHHHHH
Confidence 9987765
No 64
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.11 E-value=2.9 Score=39.12 Aligned_cols=53 Identities=6% Similarity=-0.191 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhCChhhHhhcCCch
Q psy6082 34 YGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLH----LHNLDLAFHLNRQTGA 86 (275)
Q Consensus 34 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~----ll~~~~~~~~~~~~g~ 86 (275)
.++..++..+..+.......+...++..++-+++.+. ..+.+.....++-+.|
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d 119 (529)
T TIGR02868 63 GIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGAD 119 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhh
Confidence 3334455566667777777777777777777777653 3445555555443333
No 65
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=95.09 E-value=3.2 Score=39.39 Aligned_cols=154 Identities=9% Similarity=-0.085 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhCChhhHhhcCCchhhhHhhcccchHHHHHHHHHH
Q psy6082 32 LGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFL----HLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVF 107 (275)
Q Consensus 32 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~----~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~ 107 (275)
+..++..++..+-.++...........+..++-+++++ .+.+.+.....++-..|+ ..+.+ .....+...+.
T Consensus 73 ~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~-~~i~~---~~~~~~~~~~~ 148 (582)
T PRK11176 73 GLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDS-EQVAS---SSSGALITVVR 148 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHH-HHHHH---HHHHHHHHHHH
Confidence 34444445555655667777777777777777777664 555666666655544343 23322 22223333333
Q ss_pred HHHHHHHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhh
Q psy6082 108 NIVPTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSL 187 (275)
Q Consensus 108 ~~i~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l 187 (275)
.++..++.+++.+.+- ....+...+.+.+..++.........+..++.. +.............+.+
T Consensus 149 ~~~~~~~~~~~l~~~~-------------~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~l~g~ 214 (582)
T PRK11176 149 EGASIIGLFIMMFYYS-------------WQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQ-NTMGQVTTSAEQMLKGH 214 (582)
T ss_pred HHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCH
Confidence 3333333333322222 222333333333333444445555544444443 33444444444555556
Q ss_pred cchHHHHhhhchHHHH
Q psy6082 188 INYETVKYFNNEKFEA 203 (275)
Q Consensus 188 ~~i~~ik~~~~e~~~~ 203 (275)
.-++.-.....+....
T Consensus 215 ~~ik~~~~~~~~~~~~ 230 (582)
T PRK11176 215 KEVLIFGGQEVETKRF 230 (582)
T ss_pred HHHHHhCcCHHHHHHH
Confidence 6666666655543333
No 66
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=95.04 E-value=3.1 Score=39.12 Aligned_cols=51 Identities=8% Similarity=-0.112 Sum_probs=36.0
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6082 22 ALIASATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLH 72 (275)
Q Consensus 22 ~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll 72 (275)
........+++.+++..++..+..+.......+...++..++-+++++.-.
T Consensus 44 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~ 94 (544)
T TIGR01842 44 TLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFSATL 94 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 344444555555666666777778888888888888888888888876533
No 67
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=94.86 E-value=4.1 Score=39.59 Aligned_cols=188 Identities=6% Similarity=-0.102 Sum_probs=88.1
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhCChhhHhhcCCchhhhHhhcccchH
Q psy6082 23 LIASATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFL----HLHNLDLAFHLNRQTGALSKIIDRGSRGI 98 (275)
Q Consensus 23 ~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~----~ll~~~~~~~~~~~~g~l~~~i~~d~~~i 98 (275)
.......+++..++-.++..+-.++......++..++..++-.++.+ .+.+.+...+.++= .++ ..+.+ .+
T Consensus 178 l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~-~~i~~---~~ 252 (694)
T TIGR01846 178 LSVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-REL-EQIRN---FL 252 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhH-HHHHH---HH
Confidence 33334444444444455566666777777777777777777777664 34455555555442 333 33322 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6082 99 NFVLSAMVFNIVPTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENE 178 (275)
Q Consensus 99 ~~~~~~~~~~~i~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (275)
.......+...+..++.+++.+.+- ........+.+++...+.........+..++..++..+..+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~l~~~~-------------~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (694)
T TIGR01846 253 TGSALTVVLDLLFVVVFLAVMFFYS-------------PTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSF 319 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233333333333333332222222 333333333444444445555555555555555544444433
Q ss_pred hhhHHHHhhcchHHHHhhhch-HHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy6082 179 AGNKAIDSLINYETVKYFNNE-KFEADRYEGVLKKYEQAALKTSTSLATLNF 229 (275)
Q Consensus 179 ~~~~~~e~l~~i~~ik~~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (275)
. ....+.+..++.-..-..+ ++..+..++..+...+..............
T Consensus 320 ~-~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (694)
T TIGR01846 320 L-VESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIEL 370 (694)
T ss_pred H-HHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3444456666655554443 223333444444444444433333333333
No 68
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=94.68 E-value=4.1 Score=38.73 Aligned_cols=47 Identities=2% Similarity=-0.111 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhCChhhHhhcCCch
Q psy6082 40 CSSGFNELRNAVFASVAQRSIRKIAKNVFL----HLHNLDLAFHLNRQTGA 86 (275)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~----~ll~~~~~~~~~~~~g~ 86 (275)
...+.......+.+....+...++-+++++ .+.+.+.....++-..+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d 122 (588)
T PRK13657 72 AGVLVARHADRLAHRRRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRG 122 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHH
Confidence 344444555555566555444454444443 34455555554443333
No 69
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=94.60 E-value=4.3 Score=38.61 Aligned_cols=13 Identities=0% Similarity=-0.135 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q psy6082 45 NELRNAVFASVAQ 57 (275)
Q Consensus 45 ~~~~~~~~~~~~~ 57 (275)
......+...+..
T Consensus 77 ~~~~~~~~~~~~~ 89 (585)
T TIGR01192 77 AREADRLAHGRRA 89 (585)
T ss_pred HHHHHHHHHHHHH
Confidence 3333334444443
No 70
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.53 E-value=4.4 Score=38.43 Aligned_cols=55 Identities=11% Similarity=-0.147 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhCChhhHhhcCCch
Q psy6082 32 LGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFL----HLHNLDLAFHLNRQTGA 86 (275)
Q Consensus 32 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~----~ll~~~~~~~~~~~~g~ 86 (275)
++.++-.++..+-.+.......+...++..++-+++.+ ...+.+.....++-+.|
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~D 126 (574)
T PRK11160 68 GAAIGRTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVAD 126 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHH
Confidence 33334444556666777777777777777777777665 34445555555543344
No 71
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=94.35 E-value=3 Score=35.70 Aligned_cols=217 Identities=11% Similarity=0.053 Sum_probs=118.9
Q ss_pred cchhhhhhc--ccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhCChhhHhh
Q psy6082 9 SDGALLELT--NATDALIASATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNV-----FLHLHNLDLAFHLN 81 (275)
Q Consensus 9 ~~~~~l~~~--~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l-----~~~ll~~~~~~~~~ 81 (275)
..++..+.- .+.+..+..+...++..+....+.....++...+..+...++..++.++. |-++...+- --+
T Consensus 49 ~~g~~~~aL~~~d~~~f~~~l~~~~~l~~~~~~l~~~~~yl~~~L~l~wR~~Lt~~~~~~yl~~~~yY~l~~~~~--~id 126 (281)
T PF06472_consen 49 WNGDFYNALQQKDLQAFWRLLLLFLLLAIASALLNSILKYLRQRLALRWREWLTRHLHDRYLSNRTYYRLNNLDG--RID 126 (281)
T ss_pred HhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHhhhcccc--ccc
Confidence 344555553 34455566666666666777777888889999999888888888888887 555554443 122
Q ss_pred cCCchhhhHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccceeeech-hHHHHHHHHHHHHHHHHHH
Q psy6082 82 RQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELALISSILSYKCGTLISSILSYKCGS-EFSLLAVSCVGIYTAYTLS 160 (275)
Q Consensus 82 ~~~g~l~~~i~~d~~~i~~~~~~~~~~~i~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~-~l~li~l~~~~~~~~~~~~ 160 (275)
++-..+..-+.+=++...+.+...+..++..+. ....+.-++ -...+ ...+..++...+...+...
T Consensus 127 NpDQRIteDi~~f~~~~~~l~~~~~~~~~~l~~-f~~~L~~~~------------g~~~~~~~~~y~~~~t~~~~~ig~~ 193 (281)
T PF06472_consen 127 NPDQRITEDIRKFTESSLSLFLGLLKPILDLIS-FSVILWSIS------------GWLGPWAALIYAILGTLITHWIGPP 193 (281)
T ss_pred cHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcC------------CchHHHHHHHHHHHHHHHHHHHhhh
Confidence 333344444444445555555555554444333 333344441 34444 4444444556666667777
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhhcchHHHHhhhchHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy6082 161 ITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEA-DRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLML 239 (275)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (275)
+.+...+..+.+.+-.... ..+.|.-+.|---+.-+.|+... ++|++..+...+...+.............-+..+..
T Consensus 194 l~~l~~~~q~~Ea~fR~~l-~r~r~naE~IA~~~Ge~~E~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 272 (281)
T PF06472_consen 194 LGRLNAEQQRLEADFRYAL-VRLRENAESIAFYRGESRERRRLDRRFDALIDNWRRLIRRRLRLGFFTNFYVKYLSSILP 272 (281)
T ss_pred hHHHHHHHHHhhchHHHHH-HHHHHhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766555555544443333 34555555666677777775555 445554444444444444443333344244444443
Q ss_pred HH
Q psy6082 240 TL 241 (275)
Q Consensus 240 ~~ 241 (275)
.+
T Consensus 273 ~~ 274 (281)
T PF06472_consen 273 YL 274 (281)
T ss_pred HH
Confidence 33
No 72
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=93.86 E-value=6.1 Score=37.52 Aligned_cols=65 Identities=6% Similarity=-0.024 Sum_probs=40.3
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhCChhhHhhcCCchh
Q psy6082 23 LIASATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFL----HLHNLDLAFHLNRQTGAL 87 (275)
Q Consensus 23 ~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~----~ll~~~~~~~~~~~~g~l 87 (275)
.......+++.+++..++..+..+.......+...++..++-+++.+ ...+.+.....++-+.|+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv 130 (588)
T PRK11174 62 LLPPFILLILLFVLRALLAWLRERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQV 130 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhH
Confidence 33334444455555556667777777777777777777777777764 345566666665544444
No 73
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=93.60 E-value=7.7 Score=37.83 Aligned_cols=174 Identities=10% Similarity=-0.014 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhCChhhHhhcCCchhhhHhhcccchHHHH
Q psy6082 26 SATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFL----HLHNLDLAFHLNRQTGALSKIIDRGSRGINFV 101 (275)
Q Consensus 26 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~----~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~ 101 (275)
....+++.+++-.++..+-.++......++..++..++-.++.+ .+.+.+.....++=+ +.. .+.+ .....
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~-~i~~---~~~~~ 272 (708)
T TIGR01193 198 ISIGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DAS-SIID---ALAST 272 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHH-HHHH---HHHHH
Confidence 33334444444444555555666666666666666666665553 445566666655433 432 2212 22222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy6082 102 LSAMVFNIVPTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGN 181 (275)
Q Consensus 102 ~~~~~~~~i~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (275)
....+...+..++.++..+.+- ....+...+.+.+...+.........+..++..+...+..+...
T Consensus 273 ~~~~~~~~~~~~~~~~~l~~~~-------------~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 338 (708)
T TIGR01193 273 ILSLFLDMWILVIVGLFLVRQN-------------MLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSII- 338 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 2233333333333322222222 22223333333333444444555555555555555444444443
Q ss_pred HHHHhhcchHHHHhhhch-HHHHHHHHHHHHHHHHHHH
Q psy6082 182 KAIDSLINYETVKYFNNE-KFEADRYEGVLKKYEQAAL 218 (275)
Q Consensus 182 ~~~e~l~~i~~ik~~~~e-~~~~~~~~~~~~~~~~~~~ 218 (275)
-..+.+..++.-..-..+ +...+.+++..+...+...
T Consensus 339 e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 376 (708)
T TIGR01193 339 EDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQK 376 (708)
T ss_pred HHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333446666666555444 3333444444444444333
No 74
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=93.47 E-value=7.9 Score=37.58 Aligned_cols=189 Identities=10% Similarity=-0.061 Sum_probs=86.8
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhCChhhHhhcCCchhhhHhhcccchH
Q psy6082 23 LIASATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLH----LHNLDLAFHLNRQTGALSKIIDRGSRGI 98 (275)
Q Consensus 23 ~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~----ll~~~~~~~~~~~~g~l~~~i~~d~~~i 98 (275)
.+.....+++.+++-.++..+-.++......++..++..++-+++.+. ..+.+.....++-. + ...+.+ .+
T Consensus 175 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~-~~~i~~---~~ 249 (686)
T TIGR03797 175 LVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-G-ISQIRR---IL 249 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-H-HHHHHH---HH
Confidence 333444444444444555566667777777777777777777776643 44555555554422 3 233322 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6082 99 NFVLSAMVFNIVPTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENE 178 (275)
Q Consensus 99 ~~~~~~~~~~~i~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (275)
.......+...+..++.++..+.+- ....+...++..+..++..+......+..++..+...+.. .
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~l~~~~-------------~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 315 (686)
T TIGR03797 250 SGSTLTTLLSGIFALLNLGLMFYYS-------------WKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKIS-G 315 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 2222233333333333332222222 2233333333333344444555555555555444444433 3
Q ss_pred hhhHHHHhhcchHHHHhhhchH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy6082 179 AGNKAIDSLINYETVKYFNNEK-FEADRYEGVLKKYEQAALKTSTSLATLNFG 230 (275)
Q Consensus 179 ~~~~~~e~l~~i~~ik~~~~e~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (275)
...-..+.+.-+|.-..-+... ...+.+++..+...+..............+
T Consensus 316 ~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 368 (686)
T TIGR03797 316 LTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVL 368 (686)
T ss_pred HHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555544432 233444444444444444444444433333
No 75
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=93.32 E-value=7.5 Score=36.84 Aligned_cols=60 Identities=8% Similarity=-0.038 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhCChhhHhhcCCchh
Q psy6082 28 TSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFL----HLHNLDLAFHLNRQTGAL 87 (275)
Q Consensus 28 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~----~ll~~~~~~~~~~~~g~l 87 (275)
..+++.+++..++..+.++.......+...++..++-+++.+ ...+.+.....++=+.|+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv 103 (569)
T PRK10789 40 GTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDV 103 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhH
Confidence 334444444555556666666666667776666666666664 344566666655544444
No 76
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=92.98 E-value=9.6 Score=37.16 Aligned_cols=189 Identities=8% Similarity=-0.114 Sum_probs=88.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhCChhhHhhcCCchhhhHhhcccchHH
Q psy6082 24 IASATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFL----HLHNLDLAFHLNRQTGALSKIIDRGSRGIN 99 (275)
Q Consensus 24 ~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~----~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~ 99 (275)
+.....+++..++-.++..+-.++......++..++..++-+++++ ...+.+.....++-..+ ..+.+ .+.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~--~~i~~---~~~ 268 (710)
T TIGR03796 194 RPLLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN--DQVAE---FLS 268 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH--HHHHH---HHH
Confidence 3334444444444455566666777777777777777777777664 34455555555443333 22322 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy6082 100 FVLSAMVFNIVPTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEA 179 (275)
Q Consensus 100 ~~~~~~~~~~i~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (275)
..+...+..++..++.+++.+.+- ..+.+...+.+.+...+.........+..++..+...+..+..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~l~~~~-------------~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (710)
T TIGR03796 269 GQLATTALDAVMLVFYALLMLLYD-------------PVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVA 335 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333443444333333322222 2233333333333444444555555555555554444444444
Q ss_pred hhHHHHhhcchHHHHhhhch-HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy6082 180 GNKAIDSLINYETVKYFNNE-KFEADRYEGVLKKYEQAALKTSTSLATLNFGQ 231 (275)
Q Consensus 180 ~~~~~e~l~~i~~ik~~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (275)
.+ ..+.+..++.-..-+.. +...+.+.+..+...+..............+.
T Consensus 336 ~e-~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 387 (710)
T TIGR03796 336 IS-GLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLT 387 (710)
T ss_pred HH-HHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 33445555555554443 22333344444444444444444444333333
No 77
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=92.85 E-value=8.7 Score=36.30 Aligned_cols=189 Identities=8% Similarity=-0.061 Sum_probs=87.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhCChhhHhhcCCchhhhHhhcccchHH
Q psy6082 24 IASATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFL----HLHNLDLAFHLNRQTGALSKIIDRGSRGIN 99 (275)
Q Consensus 24 ~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~----~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~ 99 (275)
.+....+++.+++..++..+-+++.......+..++..++-+++++ .+.+.+.....++-++|+-+. .+ ...
T Consensus 54 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i-~~---~~~ 129 (571)
T TIGR02203 54 WWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQV-AS---AAT 129 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHH-HH---HHH
Confidence 3334344455555555666666777777777777777777777763 455666666665533343222 11 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy6082 100 FVLSAMVFNIVPTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEA 179 (275)
Q Consensus 100 ~~~~~~~~~~i~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (275)
..+...+..++..++.++....+- ......+.+...+...+.........+..++..+. .......
T Consensus 130 ~~~~~~i~~~~~~~~~~~~l~~~~-------------~~l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 195 (571)
T TIGR02203 130 DAFIVLVRETLTVIGLFIVLLYYS-------------WQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNS-MGQVTTV 195 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 222233333333222222222221 22223333333333444445555554444444444 3333333
Q ss_pred hhHHHHhhcchHHHHhhhchHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy6082 180 GNKAIDSLINYETVKYFNNEKFEAD-RYEGVLKKYEQAALKTSTSLATLNFG 230 (275)
Q Consensus 180 ~~~~~e~l~~i~~ik~~~~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (275)
.....+.+..++.-...+......+ ..++..+...+..............+
T Consensus 196 ~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (571)
T TIGR02203 196 AEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLI 247 (571)
T ss_pred HHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666555433333 33333333444444344334333333
No 78
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=91.50 E-value=13 Score=35.24 Aligned_cols=150 Identities=11% Similarity=-0.009 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhCChhhHhhcCCchhhhHhhcccchHHHHHHHHHH
Q psy6082 32 LGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLH----LHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVF 107 (275)
Q Consensus 32 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~----ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~ 107 (275)
+.+++..+...+-.++......++..++..++-+++.+. ..+.+.....++-.-| +..+.+. ....+...+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d-~~~i~~~---~~~~~~~~~~ 141 (576)
T TIGR02204 66 VVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTD-TTLLQSV---IGSSLSMALR 141 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHH-HHHHHHH---HHHHHHHHHH
Confidence 333333444455556777777777777777777777643 3334444443331112 2222221 1222223233
Q ss_pred HHHHHHHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhh
Q psy6082 108 NIVPTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSL 187 (275)
Q Consensus 108 ~~i~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l 187 (275)
.++..+..++..+.+- ....+.+.+...+...+..+......+..++..+...+. ........+.+
T Consensus 142 ~~~~~~~~~~~~~~~~-------------~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~ 207 (576)
T TIGR02204 142 NALMCIGGLIMMFITS-------------PKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADA-GSYAGETLGAI 207 (576)
T ss_pred HHHHHHHHHHHHHHHh-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCc
Confidence 3333333322222222 233333333333333344445555555555555444444 33334445555
Q ss_pred cchHHHHhhhch
Q psy6082 188 INYETVKYFNNE 199 (275)
Q Consensus 188 ~~i~~ik~~~~e 199 (275)
.-++.-..-..+
T Consensus 208 ~~ik~~~~~~~~ 219 (576)
T TIGR02204 208 RTVQAFGHEDAE 219 (576)
T ss_pred HHHHHhccCHHH
Confidence 555555554443
No 79
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=89.89 E-value=18 Score=34.15 Aligned_cols=48 Identities=15% Similarity=0.068 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhCChhhHhhcCCchh
Q psy6082 40 CSSGFNELRNAVFASVAQRSIRKIAKNVFL----HLHNLDLAFHLNRQTGAL 87 (275)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~----~ll~~~~~~~~~~~~g~l 87 (275)
+..+..++......++..++..++-+++.+ ...+.+.....++-+.|+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv 115 (547)
T PRK10522 64 VTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDV 115 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhH
Confidence 445566666666676777777666666664 234444444444333333
No 80
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=88.47 E-value=26 Score=34.25 Aligned_cols=202 Identities=6% Similarity=-0.059 Sum_probs=113.8
Q ss_pred cccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhCChhhHhh-cCCchhhhHh
Q psy6082 17 TNATDALIASATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLH----LHNLDLAFHLN-RQTGALSKII 91 (275)
Q Consensus 17 ~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~----ll~~~~~~~~~-~~~g~l~~~i 91 (275)
.++.+.++.....+++..+.-.++..+=.++-.....+....+..++-+++++. .-+.+...+-. .+..+-+
T Consensus 187 ~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~el~~I--- 263 (709)
T COG2274 187 DASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVRELEQI--- 263 (709)
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHHHHHHH---
Confidence 344444555444444444444455555556677777777777766666666553 22234443332 2221111
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6082 92 DRGSRGINFVLSAMVFNIVPTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVN 171 (275)
Q Consensus 92 ~~d~~~i~~~~~~~~~~~i~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~ 171 (275)
-+-+.......+.+++..++.+++...+- ...-+.....+.+.+.+..+....+.++.++..++
T Consensus 264 ---r~flt~~~l~~iiD~~~~~i~l~vm~~ys-------------~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~ 327 (709)
T COG2274 264 ---REFLTGSILTLIIDLLFALIFLAVMFLYS-------------WKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEE 327 (709)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333334445555555555555544544 44444444444445555556666666666666666
Q ss_pred HHHHHHhhhhHHHHhhcchHHHHhhhc-hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy6082 172 MNKAENEAGNKAIDSLINYETVKYFNN-EKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLM 238 (275)
Q Consensus 172 ~~~~~~~~~~~~~e~l~~i~~ik~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (275)
..+..+-+. -....+..+|+....+. .....+++.+..+...+...-..........++.+...+.
T Consensus 328 ~a~~~s~lv-E~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~i 394 (709)
T COG2274 328 SAEQQSFLV-ETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLI 394 (709)
T ss_pred HHHHhhHHH-HHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555554 55667888888888874 5666777777777777777666666666666655554433
No 81
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=83.33 E-value=41 Score=31.76 Aligned_cols=50 Identities=4% Similarity=-0.052 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhCChhhHhhcCCchh
Q psy6082 38 RICSSGFNELRNAVFASVAQRSIRKIAKNVFL----HLHNLDLAFHLNRQTGAL 87 (275)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~----~ll~~~~~~~~~~~~g~l 87 (275)
.++..+..+.......++..++..++-+++.+ ...+.+.....++-+.|+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv 120 (555)
T TIGR01194 67 LLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDI 120 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhH
Confidence 34445566666666677777777666666664 344455555555544543
No 82
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=75.66 E-value=73 Score=30.09 Aligned_cols=30 Identities=7% Similarity=-0.005 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6082 42 SGFNELRNAVFASVAQRSIRKIAKNVFLHL 71 (275)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l 71 (275)
.+...+..+...+.+.+...++|..+=+++
T Consensus 50 ~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~ 79 (559)
T COG4988 50 LVLRAFLAWLRERLGYRAAAKVRASLRQLV 79 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555555555555444444
No 83
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=73.17 E-value=85 Score=29.69 Aligned_cols=61 Identities=8% Similarity=0.029 Sum_probs=34.3
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhCChhhHhhc
Q psy6082 22 ALIASATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVF----LHLHNLDLAFHLNR 82 (275)
Q Consensus 22 ~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~----~~ll~~~~~~~~~~ 82 (275)
........+++.+.+..+......+...+.......++..++..++. +...+.+....-++
T Consensus 50 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~ 114 (567)
T COG1132 50 ELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISR 114 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhCcCCcchHHHH
Confidence 33444444555555666666666666666666666666666666554 34455554444443
No 84
>PRK11677 hypothetical protein; Provisional
Probab=70.86 E-value=43 Score=25.24 Aligned_cols=45 Identities=13% Similarity=0.175 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHhhhhHHHH
Q psy6082 141 SEFSLLAVSCVGIYTAYTLSITQ-W---RTQFRVNMNKAENEAGNKAID 185 (275)
Q Consensus 141 ~~l~li~l~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~e 185 (275)
|.++++.+++.+++.++..++.. . .++..++..++..++..+=.|
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~~~~~~q~~le~eLe~~k~ele~Ykqe 51 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAELEEYRQE 51 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666555544444444332 2 233334444444444444333
No 85
>KOG0058|consensus
Probab=67.39 E-value=1.3e+02 Score=29.41 Aligned_cols=51 Identities=16% Similarity=0.104 Sum_probs=36.2
Q ss_pred chhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6082 20 TDALIASATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLH 70 (275)
Q Consensus 20 ~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ 70 (275)
.+..-.....+.+++++-.++.++-.++-++...++..++..++-+.+.++
T Consensus 184 ~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~~lF~sil~Q 234 (716)
T KOG0058|consen 184 ADALKRACTILLGLFLIGALANAIRGGLLQYAGERVVARLRTDLFRSLLRQ 234 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555556666666666666677777778888888888888888777665
No 86
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.12 E-value=52 Score=24.46 Aligned_cols=75 Identities=15% Similarity=0.069 Sum_probs=32.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcchHHHHhhhchHHHHHHHHHHHHHHHHH
Q psy6082 140 GSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADRYEGVLKKYEQA 216 (275)
Q Consensus 140 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~ 216 (275)
-|..+++.+++.+++..+..++.+..-+...+.....++.-..+-+. --+.++-|+......+...+...+.++.
T Consensus 7 ~W~~a~igLvvGi~IG~li~Rlt~~~~k~q~~~q~ELe~~K~~ld~~--rqel~~HFa~sAeLlktl~~dYqklyqH 81 (138)
T COG3105 7 TWEYALIGLVVGIIIGALIARLTNRKLKQQQKLQYELEKVKAQLDEY--RQELVKHFARSAELLKTLAQDYQKLYQH 81 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcchhhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666555555555554433322222222222221111111 1234556665555555444444444433
No 87
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=64.58 E-value=1.3e+02 Score=28.56 Aligned_cols=53 Identities=11% Similarity=-0.033 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhCChhhHhhc
Q psy6082 30 IILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFL----HLHNLDLAFHLNR 82 (275)
Q Consensus 30 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~----~ll~~~~~~~~~~ 82 (275)
+++..++..++..+-.++......+...++..++-.++.+ ...+.+.....++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~ 127 (592)
T PRK10790 71 YVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISR 127 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHH
Confidence 3333333344455555666666666666666666655553 3445555555544
No 88
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=61.75 E-value=10 Score=28.29 Aligned_cols=26 Identities=4% Similarity=0.015 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6082 141 SEFSLLAVSCVGIYTAYTLSITQWRT 166 (275)
Q Consensus 141 ~~l~li~l~~~~~~~~~~~~~~~~~~ 166 (275)
|.+.+++++++++++++.....++.+
T Consensus 2 W~l~~iii~~i~l~~~~~~~~~rRR~ 27 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCHNRRRR 27 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555555444444443
No 89
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=57.50 E-value=77 Score=23.91 Aligned_cols=60 Identities=12% Similarity=0.138 Sum_probs=42.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcchHHHHhhhch
Q psy6082 140 GSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNE 199 (275)
Q Consensus 140 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e 199 (275)
.|.+.++.+...++..++...++....+..++...-.+..+++...+...++.+.+-|..
T Consensus 32 ~~~l~LlsLgl~~LLLV~IcVigsQ~~qlq~dl~tLretfsNFssst~aEvqaL~S~G~s 91 (138)
T PF03954_consen 32 GPRLLLLSLGLSLLLLVVICVIGSQNSQLQRDLRTLRETFSNFSSSTLAEVQALSSQGGS 91 (138)
T ss_pred cchHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcccc
Confidence 356666667666666666667777777778877777777777777777777766665543
No 90
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=57.46 E-value=89 Score=29.74 Aligned_cols=80 Identities=15% Similarity=0.083 Sum_probs=43.3
Q ss_pred eeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHhhhhHHHHhhcchHH-HHhhhchHHHHHHHHHHHHHH
Q psy6082 137 YKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVN-M-NKAENEAGNKAIDSLINYET-VKYFNNEKFEADRYEGVLKKY 213 (275)
Q Consensus 137 ~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~e~l~~i~~-ik~~~~e~~~~~~~~~~~~~~ 213 (275)
+..+|++..+.++.+.+.+.+..+..+..++.... + ..-..+......+.+.+++. |-.++ |+...+.+.....+.
T Consensus 29 f~~~~~l~~i~~l~~~~~~i~~l~~~~~~~~~~~~~~i~~ls~~~~~~~~~al~nmPiGii~~~-e~~~veW~Npf~~~i 107 (655)
T COG3887 29 FSFNWWLSAIAVLLLVVFLIFLLLAFTLFYQDSDQNYISYLSYQAEKSLEEALTNMPIGIILFN-ETNKVEWVNPFASKI 107 (655)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEEEEc-CCCceEEecHHHHHh
Confidence 78888888887777666666555555444443333 2 22334444455666665543 33344 555555554444444
Q ss_pred HHHH
Q psy6082 214 EQAA 217 (275)
Q Consensus 214 ~~~~ 217 (275)
....
T Consensus 108 f~~~ 111 (655)
T COG3887 108 FNKN 111 (655)
T ss_pred cChh
Confidence 4333
No 91
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=52.55 E-value=75 Score=23.66 Aligned_cols=72 Identities=7% Similarity=-0.146 Sum_probs=34.8
Q ss_pred hcCCchhhhHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHH
Q psy6082 81 NRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLS 160 (275)
Q Consensus 81 ~~~~g~l~~~i~~d~~~i~~~~~~~~~~~i~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~ 160 (275)
+.+.||.+..-..+...+...+... ++|-+..+++..+.- . +...++...+..++...+.+++.++
T Consensus 51 ~~~~GD~V~v~i~~~~~~~aa~l~Y---~lPll~li~g~~l~~------~-----~~~~e~~~~l~~l~~l~~~~~~~~~ 116 (135)
T PF04246_consen 51 GAKVGDRVEVEIPESSLLKAAFLVY---LLPLLALIAGAVLGS------Y-----LGGSELWAILGGLLGLALGFLILRL 116 (135)
T ss_pred CCCCCCEEEEEeccchHHHHHHHHH---HHHHHHHHHHHHHHH------H-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777665555544444433333 333333332222222 0 0122555556666666666666666
Q ss_pred HHHHHH
Q psy6082 161 ITQWRT 166 (275)
Q Consensus 161 ~~~~~~ 166 (275)
+.++.+
T Consensus 117 ~~~~~~ 122 (135)
T PF04246_consen 117 FDRRLK 122 (135)
T ss_pred HHhhhc
Confidence 655543
No 92
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=52.48 E-value=1.1e+02 Score=23.77 Aligned_cols=18 Identities=6% Similarity=0.008 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy6082 203 ADRYEGVLKKYEQAALKT 220 (275)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~ 220 (275)
.+++++..++..+.+...
T Consensus 68 ~~~l~~~~~~~~~~~~~~ 85 (168)
T PF01956_consen 68 PKKLEKRQMELMEKQQEM 85 (168)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344544444444444444
No 93
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=43.53 E-value=69 Score=20.17 Aligned_cols=6 Identities=0% Similarity=-0.185 Sum_probs=2.4
Q ss_pred HHHHHH
Q psy6082 161 ITQWRT 166 (275)
Q Consensus 161 ~~~~~~ 166 (275)
+.|++.
T Consensus 26 ~IRri~ 31 (58)
T PF13314_consen 26 FIRRIL 31 (58)
T ss_pred HHHHHH
Confidence 344433
No 94
>PHA03231 glycoprotein BALF4; Provisional
Probab=43.10 E-value=75 Score=31.56 Aligned_cols=66 Identities=11% Similarity=-0.022 Sum_probs=38.4
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6082 93 RGSRGINFVLSAMVFNIVPTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNM 172 (275)
Q Consensus 93 ~d~~~i~~~~~~~~~~~i~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~ 172 (275)
+|...+...+...+......+.. ++..++- |.-||-=++.++++++..+++..+..++.++...+-
T Consensus 669 ~gLG~vGk~vg~vv~~v~ga~~S-iVsG~~s-------------Fl~NPFGg~~iillvia~vv~v~l~~rr~~~~~~~P 734 (829)
T PHA03231 669 QGLGAVGKAVGNVVSGVAGAVGS-IVSGVIS-------------FLKNPFGGLAIGLLVIAVLVAVFLAYRRVRRLRQNP 734 (829)
T ss_pred hhhhhhchhhhhhhhhHHHHHHH-HHHHHHH-------------HhcCchHHHHHHHHHHHHhhhhhHHHHHHHHHHhCc
Confidence 45666666665555544333333 3334444 788887777666666666666666666666555443
No 95
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=37.67 E-value=1.8e+02 Score=22.09 Aligned_cols=52 Identities=12% Similarity=0.066 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6082 103 SAMVFNIVPTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQ 167 (275)
Q Consensus 103 ~~~~~~~i~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~ 167 (275)
.+...-++|..+.++-..-.+ -...|.+.++.++...+.+..+-...++..+
T Consensus 67 ~~m~LfFVPagVGim~~~~ll-------------~~~~~~Il~~ivvSTllvl~vtg~v~~~l~r 118 (141)
T PRK04125 67 NNIGFLFVPSGISVINSLGVM-------------SQYPVQIIGVIIVATILLLACTGLFSQFILG 118 (141)
T ss_pred HHHHHHHhhhHhHHHHhHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444556666555555555 3444555555555555555555555554443
No 96
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=35.76 E-value=58 Score=23.71 Aligned_cols=15 Identities=0% Similarity=-0.110 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy6082 162 TQWRTQFRVNMNKAE 176 (275)
Q Consensus 162 ~~~~~~~~~~~~~~~ 176 (275)
.|..++..++.++..
T Consensus 20 iRPQkKr~Ke~~em~ 34 (113)
T PRK06531 20 QRQQKKQAQERQNQL 34 (113)
T ss_pred echHHHHHHHHHHHH
Confidence 444444444444433
No 97
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=35.28 E-value=2.1e+02 Score=22.04 Aligned_cols=22 Identities=0% Similarity=-0.047 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy6082 155 TAYTLSITQWRTQFRVNMNKAE 176 (275)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~ 176 (275)
+++......+.++..+++..-.
T Consensus 15 li~~~~~~~kl~kl~r~Y~~lm 36 (151)
T PF14584_consen 15 LILIIILNIKLRKLKRRYDALM 36 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444455555555555443
No 98
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=34.73 E-value=2.3e+02 Score=23.45 Aligned_cols=49 Identities=10% Similarity=-0.016 Sum_probs=24.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcc
Q psy6082 140 GSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLIN 189 (275)
Q Consensus 140 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~ 189 (275)
+|++.+++-+. .-.+.....++++.++..-...+-+--......|.+.+
T Consensus 51 ~~~~~~i~gi~-~g~l~am~vl~rra~ra~Y~qieGqpGAa~avL~~lr~ 99 (224)
T PF13829_consen 51 SWWYWLIIGIL-LGLLAAMIVLSRRAQRAAYAQIEGQPGAAGAVLDNLRR 99 (224)
T ss_pred cHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhhcC
Confidence 44444443333 33344555666766665555444444444455555543
No 99
>PRK09609 hypothetical protein; Provisional
Probab=34.65 E-value=3.1e+02 Score=23.90 Aligned_cols=83 Identities=11% Similarity=-0.031 Sum_probs=44.7
Q ss_pred eechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcchHHHHhhhchHHHHHHHHHHHHHHHHHH
Q psy6082 138 KCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADRYEGVLKKYEQAA 217 (275)
Q Consensus 138 ~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~ 217 (275)
..+|..++...+...++..+...+-+..++.-.+..+. .+..+.. |..+..-.....+.++...+++++....+.+..
T Consensus 77 ~ffPgFTLsa~l~GlI~Glf~~~~fk~~~~~f~~~~~~-~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~ki~~~~~k~ 154 (312)
T PRK09609 77 VYHPYYTLAAMVYGFIPGIVGWFFFKFGKKFFGKESRI-KRYDNKI-FKQKEQYDFALENPNSEKIQKIKQKIILLEKKK 154 (312)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHH-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 44788888887777777777666666655544443222 1222222 222221222333444444777777777766666
Q ss_pred HHHHH
Q psy6082 218 LKTST 222 (275)
Q Consensus 218 ~~~~~ 222 (275)
.+...
T Consensus 155 ~~~~~ 159 (312)
T PRK09609 155 KKLEK 159 (312)
T ss_pred HHHHh
Confidence 66543
No 100
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=32.29 E-value=2.3e+02 Score=21.67 Aligned_cols=71 Identities=11% Similarity=0.000 Sum_probs=41.3
Q ss_pred hcCCchhhhHhhcccchHHHHHHHHHHHHHHHHHHHHHHHH--HhcccccccccccceeeechhHHHHHHHHHHHHHHHH
Q psy6082 81 NRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELALISS--ILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYT 158 (275)
Q Consensus 81 ~~~~g~l~~~i~~d~~~i~~~~~~~~~~~i~~~~~~i~~~~--~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~ 158 (275)
...+|+.+. =+++.-.-.....+..+++-+..++..+. ++ +......++..+....+.+++.
T Consensus 58 pL~~Gq~Ve---iGi~EkslL~sA~LvYi~PL~~l~v~~~La~~L-------------~~~e~~~~~~~~lg~~l~fl~~ 121 (150)
T COG3086 58 PLEPGQKVE---LGIEEKSLLKSALLVYIFPLVGLFLGAILAQYL-------------FFSELIVIFGAFLGLALGFLLA 121 (150)
T ss_pred cCCCCCEEE---EccCcccHHHHHHHHHHHHHHHHHHHHHHHHHH-------------hhhhHHHHHHHHHHHHHHHHHH
Confidence 456666533 34444444445555555555554444333 34 5666666777777777777777
Q ss_pred HHHHHHHHH
Q psy6082 159 LSITQWRTQ 167 (275)
Q Consensus 159 ~~~~~~~~~ 167 (275)
+.+.|+..+
T Consensus 122 r~ysRkl~~ 130 (150)
T COG3086 122 RRYSRKLAK 130 (150)
T ss_pred HHHHHHhhh
Confidence 777776654
No 101
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=30.38 E-value=1.5e+02 Score=18.84 Aligned_cols=14 Identities=14% Similarity=0.050 Sum_probs=5.5
Q ss_pred hhHHHHHHHHHHHH
Q psy6082 141 SEFSLLAVSCVGIY 154 (275)
Q Consensus 141 ~~l~li~l~~~~~~ 154 (275)
.++++++++++.+.
T Consensus 18 ~pl~l~il~~f~~G 31 (68)
T PF06305_consen 18 LPLGLLILIAFLLG 31 (68)
T ss_pred chHHHHHHHHHHHH
Confidence 33444444433333
No 102
>PF04145 Ctr: Ctr copper transporter family; InterPro: IPR007274 The redox active metal copper is an essential cofactor in critical biological processes such as respiration, iron transport, oxidative stress protection, hormone production, and pigmentation. A widely conserved family of high-affinity copper transport proteins (Ctr proteins) mediates copper uptake at the plasma membrane. A series of clustered methionine residues in the hydrophilic extracellular domain, and an MXXXM motif in the second transmembrane domain, are important for copper uptake. These methionines probably coordinate copper during the process of metal transport.; GO: 0005375 copper ion transmembrane transporter activity, 0035434 copper ion transmembrane transport, 0016021 integral to membrane; PDB: 2LS4_A 2LS2_A 2LS3_A.
Probab=30.36 E-value=79 Score=23.58 Aligned_cols=20 Identities=10% Similarity=0.335 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy6082 104 AMVFNIVPTIFELALISSIL 123 (275)
Q Consensus 104 ~~~~~~i~~~~~~i~~~~~l 123 (275)
..+...++..+..+..+++|
T Consensus 104 ~~~l~~~~~~l~Y~LMLvvM 123 (144)
T PF04145_consen 104 RALLHFVQVLLGYLLMLVVM 123 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 44555666677777777777
No 103
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=30.05 E-value=1.8e+02 Score=21.95 Aligned_cols=7 Identities=14% Similarity=-0.287 Sum_probs=2.7
Q ss_pred hhHHHHH
Q psy6082 141 SEFSLLA 147 (275)
Q Consensus 141 ~~l~li~ 147 (275)
|++.+++
T Consensus 23 Wwll~~l 29 (146)
T PF14316_consen 23 WWLLLAL 29 (146)
T ss_pred HHHHHHH
Confidence 4433333
No 104
>PRK01821 hypothetical protein; Provisional
Probab=29.23 E-value=2.3e+02 Score=21.32 Aligned_cols=53 Identities=8% Similarity=-0.073 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6082 103 SAMVFNIVPTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQF 168 (275)
Q Consensus 103 ~~~~~~~i~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~ 168 (275)
.+...-++|..+.++-..-.+ -...+.+.++.++...+....+-+..++..+.
T Consensus 69 ~~m~LfFVPa~VGim~~~~ll-------------~~~~~~il~~ivvST~lvl~vtg~~~~~l~~~ 121 (133)
T PRK01821 69 RYMALLFVPIGVGVMQYYDLL-------------RAQFGPIVVSCIVSTLVVLLVVGWSSHYVHGE 121 (133)
T ss_pred HHHHHHHhhhHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445666666666555555 44455666666666666666666666555443
No 105
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=28.53 E-value=1.7e+02 Score=21.18 Aligned_cols=12 Identities=0% Similarity=-0.136 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q psy6082 162 TQWRTQFRVNMN 173 (275)
Q Consensus 162 ~~~~~~~~~~~~ 173 (275)
.|..++..++..
T Consensus 22 iRPQkKr~K~~~ 33 (109)
T PRK05886 22 SRRQRKAMQATI 33 (109)
T ss_pred ccHHHHHHHHHH
Confidence 334444333333
No 106
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=28.21 E-value=3.1e+02 Score=25.86 Aligned_cols=58 Identities=9% Similarity=0.044 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHhhcchHHHHhhhchHHHHHHHHHHHHH
Q psy6082 155 TAYTLSITQWRTQFRVNMNKAENEA-GNKAIDSLINYETVKYFNNEKFEADRYEGVLKK 212 (275)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~ 212 (275)
+.+..++.|+..+.-.+.-+...++ .-=+.|-+..++-.+.-|..+...+.|++.-.+
T Consensus 16 ~~~g~~lRkk~~~rI~~LEe~K~el~~lPv~dEi~kVK~L~L~GQTe~~Fe~Wrq~W~d 74 (570)
T COG4477 16 YAVGYLLRKKNYQRIDKLEERKNELLNLPVNDEISKVKKLHLTGQTETKFEEWRQKWDD 74 (570)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCccHHHHHHHHHHHHH
Confidence 3344444444444444433333333 334677777777777888776666666554433
No 107
>PRK09458 pspB phage shock protein B; Provisional
Probab=28.07 E-value=1.4e+02 Score=19.97 Aligned_cols=14 Identities=7% Similarity=0.292 Sum_probs=5.8
Q ss_pred hHHHHHHHHHHHHH
Q psy6082 142 EFSLLAVSCVGIYT 155 (275)
Q Consensus 142 ~l~li~l~~~~~~~ 155 (275)
++.+.++.+.|+-+
T Consensus 9 PliiF~ifVaPiWL 22 (75)
T PRK09458 9 PLTIFVLFVAPIWL 22 (75)
T ss_pred hHHHHHHHHHHHHH
Confidence 33444444444433
No 108
>KOG3386|consensus
Probab=27.20 E-value=3e+02 Score=21.31 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHH
Q psy6082 102 LSAMVFNIVPTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYT 155 (275)
Q Consensus 102 ~~~~~~~~i~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~ 155 (275)
+.+.....++..+.-++.+++| .+|.++.+.+++...+..
T Consensus 96 ~~qt~l~~~Q~~~sY~LMLifM--------------tfN~~l~Lavv~Ga~~G~ 135 (155)
T KOG3386|consen 96 LIQTLLYVVQLGFSYLLMLIFM--------------TFNGYLFLAVVLGAGVGY 135 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--------------hhhhHHHHHHHHHHhhhh
Confidence 3455556777777777777777 667776666665554443
No 109
>PRK02654 putative inner membrane protein translocase component YidC; Provisional
Probab=26.27 E-value=4.7e+02 Score=23.30 Aligned_cols=13 Identities=8% Similarity=-0.051 Sum_probs=7.9
Q ss_pred HHHHhhhhhhccc
Q psy6082 242 VLNLQSFEPHQLL 254 (275)
Q Consensus 242 v~~~g~~~v~~g~ 254 (275)
.+++|.|.+.+|.
T Consensus 107 PIF~aLY~~LR~s 119 (375)
T PRK02654 107 PILFALFATLRGS 119 (375)
T ss_pred HHHHHHHHHHHhC
Confidence 4556666666653
No 110
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=26.05 E-value=3.7e+02 Score=21.99 Aligned_cols=68 Identities=6% Similarity=-0.147 Sum_probs=40.4
Q ss_pred echhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhHHHHhhcchHHHHhhhchHHHHHHH
Q psy6082 139 CGSEFSLLAVSCVGIYTAYTLSIT-QWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADRY 206 (275)
Q Consensus 139 ~~~~l~li~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~ 206 (275)
+.|.+.+.++++........++.. +....+..+......++...-.+.+...+.=+.|+..+...++|
T Consensus 67 y~~~~~It~~llgs~slymfrwal~~lye~r~~r~~~~L~kLra~~rk~l~~LK~e~~y~aT~~ii~ky 135 (251)
T COG5415 67 YRPYLVITALLLGSGSLYMFRWALTKLYEFRNNRRLRKLAKLRAIHRKKLEKLKEETHYNATSSIIQKY 135 (251)
T ss_pred cchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHh
Confidence 556555555555433333333332 22333333444455666666677777888888888888888888
No 111
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=25.43 E-value=3e+02 Score=20.80 Aligned_cols=25 Identities=0% Similarity=-0.283 Sum_probs=10.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Q psy6082 140 GSEFSLLAVSCVGIYTAYTLSITQW 164 (275)
Q Consensus 140 ~~~l~li~l~~~~~~~~~~~~~~~~ 164 (275)
++.+.+.++.++++++++.+++.++
T Consensus 4 ~~~~~~~~i~Flil~~il~~~~~~p 28 (156)
T PRK05759 4 NGTLIGQLIAFLILVWFIMKFVWPP 28 (156)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3444444444444444444443333
No 112
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=25.41 E-value=4e+02 Score=22.23 Aligned_cols=99 Identities=10% Similarity=0.074 Sum_probs=51.6
Q ss_pred hhhHhHHHHHHHHHHHHHHHH----HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhc
Q psy6082 22 ALIASATSIILGYGIARICSS----GFNE----LRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDR 93 (275)
Q Consensus 22 ~~~~~~~~l~~~~~~~~i~~~----~~~~----~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~ 93 (275)
.....+..+++++++=.++.. .+.+ +-.+......+....+.-.+++.++ ...-.-+++..|.=.++++.
T Consensus 23 n~l~l~yPl~~G~AIn~ll~g~~~~~~~~~~~~l~~~~igaaRR~~DTRvf~rIy~~l--a~~vi~~qr~~~~~~S~i~A 100 (237)
T PF13748_consen 23 NVLLLLYPLFIGFAINALLNGDVWQALMYAALVLLMWAIGAARRIYDTRVFSRIYAEL--AVPVILSQRQQGLSVSTIAA 100 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHHHHHH--hHHHHHHHHHhCCChhHHHH
Confidence 345556667777776554432 1112 2222223333334444444444444 22233467888888888888
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6082 94 GSRGINFVLSAMVFNIVPTIFELALISSIL 123 (275)
Q Consensus 94 d~~~i~~~~~~~~~~~i~~~~~~i~~~~~l 123 (275)
-++.-+++. +++-.-+|.+++.++.++-.
T Consensus 101 Rv~lsRE~V-dFfE~~lP~lits~vsivga 129 (237)
T PF13748_consen 101 RVALSREFV-DFFEQHLPTLITSVVSIVGA 129 (237)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHHHHH
Confidence 775555544 45555566665555544443
No 113
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=24.15 E-value=5e+02 Score=24.77 Aligned_cols=36 Identities=6% Similarity=0.032 Sum_probs=21.6
Q ss_pred HhhhhHHHHhhcchHHHHhhhchHHHHHHHHHHHHH
Q psy6082 177 NEAGNKAIDSLINYETVKYFNNEKFEADRYEGVLKK 212 (275)
Q Consensus 177 ~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~ 212 (275)
+-...-+.|-+.-++.++.-|......++|++..++
T Consensus 40 ~l~~~pv~~el~kvk~l~l~Ges~~~f~~w~~~~~~ 75 (569)
T PRK04778 40 ELENLPVNDELEKVKKLNLTGQSEEKFEEWRQKWDE 75 (569)
T ss_pred HHhcCCHHHHHHHHhcCCCCcccHHHHHHHHHHHHH
Confidence 333444666666777777766666666666555544
No 114
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=23.28 E-value=3.9e+02 Score=21.31 Aligned_cols=20 Identities=15% Similarity=0.072 Sum_probs=11.8
Q ss_pred eeechhHHHHHHHHHHHHHH
Q psy6082 137 YKCGSEFSLLAVSCVGIYTA 156 (275)
Q Consensus 137 ~~~~~~l~li~l~~~~~~~~ 156 (275)
+.+.|+.++..++..+.-.+
T Consensus 50 ~rf~~~~~~~aii~l~~dv~ 69 (189)
T PF02355_consen 50 LRFRWRFALAAIIALIHDVL 69 (189)
T ss_dssp HHCTHHHHHHHHHHHHHHHH
T ss_pred HHHhcchHHHHHHHHHHHHH
Confidence 56667777666655554333
No 115
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=23.20 E-value=3.2e+02 Score=20.37 Aligned_cols=55 Identities=13% Similarity=0.068 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6082 104 AMVFNIVPTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVN 171 (275)
Q Consensus 104 ~~~~~~i~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~ 171 (275)
+...-++|..+.++-..-.+ ....+++..+.++...+....+-+...+..+..++
T Consensus 66 ~m~llFVPa~VgVm~y~~~l-------------~~~~~~Il~~~iiST~lv~~vtg~~~~~l~~~~~~ 120 (128)
T COG1380 66 NMALLFVPAGVGVMNYFDLL-------------AADGLPILVVIIISTLLVLLVTGWVVQLLIRWQSK 120 (128)
T ss_pred HHHHHHhcchHHHHHHHHHH-------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556555555555555 44445555555555555555665555555544444
No 116
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=23.07 E-value=3.3e+02 Score=20.44 Aligned_cols=18 Identities=6% Similarity=0.047 Sum_probs=7.9
Q ss_pred hchHHHHHHHHHHHHHHH
Q psy6082 197 NNEKFEADRYEGVLKKYE 214 (275)
Q Consensus 197 ~~e~~~~~~~~~~~~~~~ 214 (275)
..++.+.++.++..++..
T Consensus 94 ~l~~~el~~~~~~~~~~~ 111 (132)
T PF04120_consen 94 DLTEEELEEIRKRYERLA 111 (132)
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 117
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=21.77 E-value=2.1e+02 Score=20.22 Aligned_cols=17 Identities=12% Similarity=-0.048 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy6082 161 ITQWRTQFRVNMNKAEN 177 (275)
Q Consensus 161 ~~~~~~~~~~~~~~~~~ 177 (275)
+.|..++..++.++..+
T Consensus 26 i~RPQrKr~K~~~~ml~ 42 (97)
T COG1862 26 IIRPQRKRMKEHQELLN 42 (97)
T ss_pred hcCHHHHHHHHHHHHHH
Confidence 34444444444444433
No 118
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=21.23 E-value=3.6e+02 Score=26.66 Aligned_cols=16 Identities=6% Similarity=-0.018 Sum_probs=6.0
Q ss_pred eeechhHHHHHHHHHH
Q psy6082 137 YKCGSEFSLLAVSCVG 152 (275)
Q Consensus 137 ~~~~~~l~li~l~~~~ 152 (275)
.+++.++........+
T Consensus 242 ~llG~plt~~s~~~~~ 257 (727)
T COG1033 242 GLLGIPLTITTSAVPP 257 (727)
T ss_pred HHhCCCchhHHHHHHH
Confidence 3333333333333333
No 119
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=21.14 E-value=5.6e+02 Score=24.38 Aligned_cols=40 Identities=5% Similarity=0.027 Sum_probs=22.8
Q ss_pred HHHhhhhHHHHhhcchHHHHhhhchHHHHHHHHHHHHHHH
Q psy6082 175 AENEAGNKAIDSLINYETVKYFNNEKFEADRYEGVLKKYE 214 (275)
Q Consensus 175 ~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~ 214 (275)
...-...-+.|-+.-++-++..|......++|++..++..
T Consensus 34 k~~l~~~pv~~el~kvk~l~l~Gqt~~~fe~w~~~w~~i~ 73 (560)
T PF06160_consen 34 KNELMNLPVADELSKVKKLNLTGQTEEKFEEWRQKWDEIV 73 (560)
T ss_pred HHHHHcCCHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 3333444566777777777766666555555555444433
No 120
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=20.03 E-value=4.1e+02 Score=20.40 Aligned_cols=47 Identities=4% Similarity=0.130 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHhhcchHHHH
Q psy6082 148 VSCVGIYTAYTLSITQWRTQFRVNMNKAEN-EAGNKAIDSLINYETVK 194 (275)
Q Consensus 148 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~l~~i~~ik 194 (275)
++.+++..+....+.|..+++..-.+...+ .+-..+.+....++.++
T Consensus 12 iilli~~~~~~~kl~kl~r~Y~~lm~g~~~~~lE~~l~~~~~~~~~~~ 59 (151)
T PF14584_consen 12 IILLILIIILNIKLRKLKRRYDALMRGKDGKNLEDLLNELFDQIDELK 59 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHH
Confidence 334444455555555555555544443333 23333444444444443
Done!