RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6082
         (275 letters)



>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 163

 Score = 25.7 bits (56), Expect = 5.2
 Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 19 ATDALIASATSIILGYG-IARICSSGFNEL--RNAVFASVAQRSIRKI 63
          ATD +IA   +++ GYG + + C+        R  +       +++  
Sbjct: 17 ATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAA 64


>d1o1xa_ c.121.1.1 (A:) Putative sugar-phosphate isomerase
           {Thermotoga maritima [TaxId: 2336]}
          Length = 145

 Score = 25.3 bits (55), Expect = 6.9
 Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 11/88 (12%)

Query: 133 SILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEA-----GNKAIDSL 187
            IL    G   S+ A    GI  A  L            + ++ N A       + I + 
Sbjct: 63  GILLCGTGLGMSIAANRYRGIRAALCLFPDM------ARLARSHNNANILVLPGRLIGAE 116

Query: 188 INYETVKYFNNEKFEADRYEGVLKKYEQ 215
           + +  V  F +  F+  R+E  ++K ++
Sbjct: 117 LAFWIVDTFLSTPFDGGRHERRIRKIDE 144


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.134    0.382 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 909,794
Number of extensions: 37758
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 4
Length of query: 275
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 191
Effective length of database: 1,254,276
Effective search space: 239566716
Effective search space used: 239566716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.0 bits)