Query psy6083
Match_columns 74
No_of_seqs 140 out of 1048
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 17:12:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6083.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6083hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d2f_A Heat shock protein homo 99.7 1.6E-17 5.4E-22 116.1 6.8 73 1-73 59-132 (675)
2 1yuw_A Heat shock cognate 71 k 99.7 2E-17 6.9E-22 113.3 7.2 73 1-73 61-133 (554)
3 4b9q_A Chaperone protein DNAK; 99.6 7.7E-16 2.6E-20 106.4 6.5 70 1-74 60-130 (605)
4 3i33_A Heat shock-related 70 k 99.6 1.7E-15 5.9E-20 99.4 7.6 73 1-73 80-152 (404)
5 3qfu_A 78 kDa glucose-regulate 99.6 4.2E-15 1.5E-19 97.0 6.6 73 1-73 75-147 (394)
6 2kho_A Heat shock protein 70; 99.6 3.5E-15 1.2E-19 103.2 5.1 70 1-74 60-130 (605)
7 1dkg_D Molecular chaperone DNA 99.4 4.6E-13 1.6E-17 87.3 6.5 69 1-73 60-129 (383)
8 4gni_A Putative heat shock pro 99.1 2.4E-11 8.1E-16 80.0 2.9 70 2-73 71-144 (409)
9 2v7y_A Chaperone protein DNAK; 98.2 1.1E-06 3.6E-11 59.7 4.6 45 1-73 59-103 (509)
10 1v95_A Nuclear receptor coacti 76.0 4.4 0.00015 23.0 3.8 44 27-70 58-108 (130)
11 2ja9_A Exosome complex exonucl 72.9 2.9 0.0001 24.8 2.7 36 8-44 100-136 (175)
12 2nn6_G Exosome complex exonucl 66.3 3.3 0.00011 26.5 2.0 35 8-44 219-254 (289)
13 4ehu_A Activator of 2-hydroxyi 63.4 7.7 0.00026 23.7 3.3 34 35-72 18-51 (276)
14 2ba0_A Archeal exosome RNA bin 61.5 3.1 0.00011 25.6 1.2 35 8-44 145-180 (229)
15 2je6_I RRP4, exosome complex R 53.1 4.4 0.00015 25.3 0.9 36 8-45 164-200 (251)
16 1hgv_A PH75 inovirus major coa 46.8 4.9 0.00017 18.3 0.3 19 54-72 3-21 (46)
17 2z0s_A Probable exosome comple 46.4 11 0.00039 23.0 2.0 35 8-44 157-192 (235)
18 1g6u_A Domain swapped dimer; d 46.4 6.1 0.00021 18.0 0.6 10 53-62 16-25 (48)
19 4hvc_A Bifunctional glutamate/ 40.9 30 0.001 23.8 3.5 44 26-69 366-414 (519)
20 3qii_A PHD finger protein 20; 40.8 40 0.0014 17.7 3.4 33 27-59 35-68 (85)
21 1nj1_A PROR, proline-tRNA synt 40.6 54 0.0018 22.3 4.7 45 26-70 366-415 (501)
22 1nj8_A Proline-tRNA synthetase 36.9 48 0.0016 22.2 4.0 45 26-70 333-382 (459)
23 3osj_A Phycobilisome LCM core- 35.1 13 0.00046 21.5 0.9 13 8-20 92-104 (147)
24 2hc5_A ORF 99, hypothetical pr 34.7 54 0.0019 18.0 3.4 40 30-70 58-100 (117)
25 2ky4_A Phycobilisome linker po 34.6 14 0.0005 21.4 1.0 13 8-20 84-96 (149)
26 3ikl_A DNA polymerase subunit 34.1 47 0.0016 22.6 3.6 44 26-69 401-449 (459)
27 3ohw_B Phycobilisome LCM core- 33.6 15 0.00053 21.3 1.0 13 8-20 93-105 (148)
28 3nph_B Phycobilisome 32.1 kDa 32.8 13 0.00046 21.5 0.7 13 8-20 81-93 (148)
29 3pru_C Phycobilisome 32.1 kDa 31.9 16 0.00054 21.4 0.9 13 8-20 86-98 (154)
30 2cxi_A Phenylalanyl-tRNA synth 31.0 34 0.0012 22.2 2.4 39 7-47 287-325 (348)
31 3mgb_A TEG12; sulfotransferase 28.0 12 0.00041 24.2 -0.1 32 2-33 207-240 (319)
32 3p8d_A Medulloblastoma antigen 27.7 64 0.0022 16.0 3.4 33 27-59 20-53 (67)
33 2wzo_A Transforming growth fac 27.3 88 0.003 17.5 4.8 39 32-70 58-100 (146)
34 1o8r_A Guanylin; prohormone, G 27.2 45 0.0015 17.8 2.1 14 60-73 66-79 (94)
35 3plu_A Ubiquitin-like modifier 27.1 13 0.00046 19.7 0.0 15 2-16 39-53 (93)
36 3uh0_A Threonyl-tRNA synthetas 25.6 52 0.0018 22.1 2.7 43 26-68 409-457 (460)
37 1g5h_A Mitochondrial DNA polym 25.5 68 0.0023 21.5 3.2 44 26-69 391-439 (454)
38 1w53_A Phosphoserine phosphata 25.0 47 0.0016 17.3 1.9 19 52-70 40-58 (84)
39 1fs1_A SKP2 F-BOX, cyclin A/CD 24.5 13 0.00045 16.8 -0.3 13 55-67 12-24 (53)
40 2ki0_A DS119; beta-alpha-beta, 24.4 39 0.0013 14.3 1.3 13 55-72 13-25 (36)
41 1qf6_A THRRS, threonyl-tRNA sy 23.1 1.4E+02 0.0047 21.0 4.5 43 26-68 586-633 (642)
42 2x5c_A Hypothetical protein OR 23.0 99 0.0034 16.6 4.5 36 32-68 64-101 (131)
43 1hc7_A Prolyl-tRNA synthetase; 22.7 94 0.0032 20.9 3.5 44 26-70 340-388 (477)
44 2kxw_B Sodium channel protein 21.6 56 0.0019 13.3 1.5 11 57-67 5-15 (27)
45 1hyw_A GPW, head-TO-tail joini 21.6 88 0.003 15.5 4.1 21 39-59 20-40 (68)
46 1aqu_A EST, estrogen sulfotran 21.5 19 0.00065 22.4 -0.1 30 2-31 201-230 (297)
47 1s3a_A NADH-ubiquinone oxidore 21.0 1E+02 0.0035 16.1 6.8 42 21-62 45-93 (102)
48 3bfx_A Sulfotransferase 1C2; P 20.5 20 0.0007 22.2 -0.1 27 2-28 200-226 (296)
49 2i3s_B Checkpoint serine/threo 20.4 21 0.00072 15.7 -0.0 12 51-62 17-28 (36)
50 1j99_A Alcohol sulfotransferas 20.2 19 0.00066 22.2 -0.2 31 2-32 198-228 (293)
51 1ls6_A ARYL sulfotransferase; 20.1 20 0.00067 22.2 -0.2 31 2-32 199-229 (295)
No 1
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=99.71 E-value=1.6e-17 Score=116.11 Aligned_cols=73 Identities=34% Similarity=0.586 Sum_probs=68.2
Q ss_pred CCcccchhcchhhcCCCCCChHHHhhcccCCeEEEe-CCCcceEEEEECCeeEEEchhhhHHHHHHHHHHHHhc
Q psy6083 1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETALY 73 (74)
Q Consensus 1 ~np~nti~~~KrliG~~~~d~~v~~~~~~~p~~i~~-~~g~~~~~v~~~~~~~~~speev~a~iL~~lk~~ae~ 73 (74)
+||.||++++|||||+.++|+.++.+.+++||+++. .+|.+.+.+.+.|+.+.|+|+||++++|++|++.|++
T Consensus 59 ~~p~~ti~~~KrllG~~~~d~~v~~~~~~~p~~v~~~~~g~~~~~~~~~g~~~~~speei~a~~L~~lk~~ae~ 132 (675)
T 3d2f_A 59 SNIKNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFIDKVKDTVKQ 132 (675)
T ss_dssp TCGGGEECCHHHHTTCBTTCTTHHHHHTTCCSEEEECTTSBEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred hChHhHHHHHHHHhCCCCCcHHHHHHHhhCCeeEEEcCCCceEEEEEeCCCCceEcHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999987 6899999998888778999999999999999999875
No 2
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Probab=99.71 E-value=2e-17 Score=113.29 Aligned_cols=73 Identities=74% Similarity=1.162 Sum_probs=68.4
Q ss_pred CCcccchhcchhhcCCCCCChHHHhhcccCCeEEEeCCCcceEEEEECCeeEEEchhhhHHHHHHHHHHHHhc
Q psy6083 1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETALY 73 (74)
Q Consensus 1 ~np~nti~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~g~~~~~v~~~~~~~~~speev~a~iL~~lk~~ae~ 73 (74)
+||.||++++|||||++++|+.++..++++||+++..+|.+.+.+.+.+..+.|+|+||++++|++|++.|+.
T Consensus 61 ~~p~~ti~~~KrllG~~~~d~~v~~~~~~~p~~v~~~~g~~~~~v~~~~~~~~~sp~ei~a~~L~~lk~~ae~ 133 (554)
T 1yuw_A 61 MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEA 133 (554)
T ss_dssp TCGGGEECCGGGTTTCCSSCSHHHHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred hChhhehHhhHHhcCCCCCcHHHHHHhhcCCeEEEecCCceEEEEEECCCceEEcHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999877899999999988788999999999999999999875
No 3
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=99.61 E-value=7.7e-16 Score=106.39 Aligned_cols=70 Identities=44% Similarity=0.706 Sum_probs=63.3
Q ss_pred CCcccchhcchhhcCCCCCChHHHhhcccCCeEEEe-CCCcceEEEEECCeeEEEchhhhHHHHHHHHHHHHhcC
Q psy6083 1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETALYQ 74 (74)
Q Consensus 1 ~np~nti~~~KrliG~~~~d~~v~~~~~~~p~~i~~-~~g~~~~~v~~~~~~~~~speev~a~iL~~lk~~ae~~ 74 (74)
+||.||++++|||||+.++||.++...+++||+++. .+|.+.+.+ . .+.++|+||++++|++|++.|+.|
T Consensus 60 ~~p~~ti~~~KrllG~~~~d~~v~~~~~~~p~~~~~~~~g~~~~~~--~--~~~~~p~ei~a~iL~~lk~~ae~~ 130 (605)
T 4b9q_A 60 TNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEV--K--GQKMAPPQISAEVLKKMKKTAEDY 130 (605)
T ss_dssp TCGGGEECCGGGTTTCBTTSHHHHHHHTTCSSEEEECTTSBEEEEE--T--TEEECHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCcEehhhHHhhCCCCCCHHHHHHhhcCCeEEEEcCCCceEEEE--C--CEEECHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999987 788888776 2 468999999999999999999863
No 4
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=99.61 E-value=1.7e-15 Score=99.40 Aligned_cols=73 Identities=74% Similarity=1.141 Sum_probs=68.4
Q ss_pred CCcccchhcchhhcCCCCCChHHHhhcccCCeEEEeCCCcceEEEEECCeeEEEchhhhHHHHHHHHHHHHhc
Q psy6083 1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETALY 73 (74)
Q Consensus 1 ~np~nti~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~g~~~~~v~~~~~~~~~speev~a~iL~~lk~~ae~ 73 (74)
.+|.|+++++||+||+.++|+.++...+.|||.++..+|.+.+.+.+.++.+.++|+||++++|++|++.|+.
T Consensus 80 ~~~~~~~~~~Kr~lg~~~~~~~~~~~~~~~p~~~~~~~g~~~~~v~~~~~~~~~~~~ei~a~~L~~l~~~a~~ 152 (404)
T 3i33_A 80 MNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGETKTFFPEEISSMVLTKMKEIAEA 152 (404)
T ss_dssp TCSTTEECCGGGTTTCCTTSHHHHHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred hChhhhHHHHHHHhCCCCCcHHHHHHHhhCCceEEccCCceEEEEEeCCCceEEcHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999888899999999988778999999999999999999875
No 5
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP, chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae} PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Probab=99.57 E-value=4.2e-15 Score=96.97 Aligned_cols=73 Identities=56% Similarity=0.911 Sum_probs=68.1
Q ss_pred CCcccchhcchhhcCCCCCChHHHhhcccCCeEEEeCCCcceEEEEECCeeEEEchhhhHHHHHHHHHHHHhc
Q psy6083 1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETALY 73 (74)
Q Consensus 1 ~np~nti~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~g~~~~~v~~~~~~~~~speev~a~iL~~lk~~ae~ 73 (74)
.+|.+|++++||+||+.++|+.++...+.+||.++..+|.+.+.+.+.++.+.++|+||++++|++|++.|+.
T Consensus 75 ~~~~~~~~~~k~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~a~~l~~l~~~a~~ 147 (394)
T 3qfu_A 75 ANPQNTIFDIKRLIGLKYNDRSVQKDIKHLPFNVVNKDGKPAVEVSVKGEKKVFTPEEISGMILGKMKQIAED 147 (394)
T ss_dssp GCGGGEECCGGGTTTCCTTCHHHHHHHTTCSSEEEEETTEEEEEEESSSSEEEECHHHHHHHHHHHHHHHHHH
T ss_pred hCcccCHHHHHHHhCCCCCcHHHHHHhhcCCeEEEcCCCceEEEEEeCCCceEEcHHHHHHHHHHHHHHHHHH
Confidence 3799999999999999999999999999999999888899999998887788999999999999999999875
No 6
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=99.55 E-value=3.5e-15 Score=103.15 Aligned_cols=70 Identities=46% Similarity=0.742 Sum_probs=62.4
Q ss_pred CCcccchhcchhhcCCCCCChHHHhhcccCCeEEEe-CCCcceEEEEECCeeEEEchhhhHHHHHHHHHHHHhcC
Q psy6083 1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETALYQ 74 (74)
Q Consensus 1 ~np~nti~~~KrliG~~~~d~~v~~~~~~~p~~i~~-~~g~~~~~v~~~~~~~~~speev~a~iL~~lk~~ae~~ 74 (74)
+||.||++++||+||+.++|+.++...+++||+++. .+|.+.+.+ .| +.|+|+||++++|++|++.|++|
T Consensus 60 ~~p~~t~~~~Kr~iG~~~~d~~v~~~~~~~p~~~~~~~~g~~~i~~--~g--~~~~~~ei~a~~L~~l~~~ae~~ 130 (605)
T 2kho_A 60 TNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEV--KG--QKMAPPQISAEVLKKMKKTAEDY 130 (605)
T ss_dssp TCGGGEEECGGGTTTCBSSSTTHHHHHHHCSSCEEECTTSBEEEEE--TT--EEECHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCEeehhhHhhCCCCCcHHHHHHhhcCCeEEEECCCCceEEEE--CC--EEEcHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999998999999886 788888877 33 68999999999999999998753
No 7
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1
Probab=99.41 E-value=4.6e-13 Score=87.34 Aligned_cols=69 Identities=46% Similarity=0.761 Sum_probs=60.8
Q ss_pred CCcccchhcchhhcCCCCCChHHHhhcccCCeEEEe-CCCcceEEEEECCeeEEEchhhhHHHHHHHHHHHHhc
Q psy6083 1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETALY 73 (74)
Q Consensus 1 ~np~nti~~~KrliG~~~~d~~v~~~~~~~p~~i~~-~~g~~~~~v~~~~~~~~~speev~a~iL~~lk~~ae~ 73 (74)
.||.|+++++||+||+.++|+.++...+.+||+++. .+|.+.+.+ +| +.++|+||++++|++|++.|+.
T Consensus 60 ~~~~~~~~~~k~~lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~--~g--~~~~~~~i~~~~L~~l~~~a~~ 129 (383)
T 1dkg_D 60 TNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEV--KG--QKMAPPQISAEVLKKMKKTAED 129 (383)
T ss_dssp TCGGGEEECGGGTTTCBSCSHHHHHHTTTCSSEEEECSSSBEEEEE--TT--EEECHHHHHHHHHHHHHHHHHH
T ss_pred hCccceeehhHHhhCCCCCcHHHHHHhhcCCeEEEEcCCCcEEEEE--CC--EEEcHHHHHHHHHHHHHHHHHH
Confidence 379999999999999999999999888899999876 678877776 33 5899999999999999998874
No 8
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}
Probab=99.12 E-value=2.4e-11 Score=79.99 Aligned_cols=70 Identities=23% Similarity=0.275 Sum_probs=58.1
Q ss_pred CcccchhcchhhcCCCCCChHHHhhcccCCeEEEeCCCcceEEEEEC----CeeEEEchhhhHHHHHHHHHHHHhc
Q psy6083 2 NPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFK----GERKTFAPEEISSMVLTKMKETALY 73 (74)
Q Consensus 2 np~nti~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~g~~~~~v~~~----~~~~~~speev~a~iL~~lk~~ae~ 73 (74)
||.||++.+||+||+.++++.++.. .+++.+...+|.+.+.+... +..+.++|+||++++|++|++.|+.
T Consensus 71 ~~~~~i~~~K~llg~~~~~~~~~~~--~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~ev~~~~L~~l~~~a~~ 144 (409)
T 4gni_A 71 NPKNTVAYFRDILGQDFKSVDPTHN--HASAHPQEAGDNVVFTIKDKAEEDAEPSTLTVSEIATRYLRRLVGAASE 144 (409)
T ss_dssp CGGGEEESCGGGTTCCGGGCCCGGG--TTSCCCEEETTEEEEEECCSSCSSCCCEEEEHHHHHHHHHHHHHHHHHH
T ss_pred ChHhhHHHHHHHhCCCccchhhhhh--ccccceecCCCcEEEEEecCCCCCCcceEEcHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999998766544 44666666788888888754 3568899999999999999999875
No 9
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}
Probab=98.25 E-value=1.1e-06 Score=59.72 Aligned_cols=45 Identities=38% Similarity=0.705 Sum_probs=35.8
Q ss_pred CCcccchhcchhhcCCCCCChHHHhhcccCCeEEEeCCCcceEEEEECCeeEEEchhhhHHHHHHHHHHHHhc
Q psy6083 1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETALY 73 (74)
Q Consensus 1 ~np~nti~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~g~~~~~v~~~~~~~~~speev~a~iL~~lk~~ae~ 73 (74)
.|| ||++++||+||+.| ++ .+ .| +.++|+||++++|++|++.|+.
T Consensus 59 ~~p-~~~~~~Kr~lg~p~--------------~~---------~~--~g--~~~~~~ei~a~~L~~l~~~ae~ 103 (509)
T 2v7y_A 59 TNP-NTIISIKRHMGTDY--------------KV---------EI--EG--KQYTPQEISAIILQYLKSYAED 103 (509)
T ss_dssp TCS-SEEECGGGTTTSCC--------------CE---------EE--TT--EEECHHHHHHHHHHHHHHHHHH
T ss_pred hCC-CcHHHHHHhcCCCc--------------EE---------EE--CC--EEEcHHHHHHHHHHHHHHHHHH
Confidence 478 99999999999843 21 12 23 4789999999999999999875
No 10
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=75.98 E-value=4.4 Score=22.99 Aligned_cols=44 Identities=14% Similarity=0.204 Sum_probs=31.8
Q ss_pred cccCCeEEEe-----CCCcceEEEEEC--CeeEEEchhhhHHHHHHHHHHH
Q psy6083 27 MKHWPFTVVN-----DCSKPKIQVEFK--GERKTFAPEEISSMVLTKMKET 70 (74)
Q Consensus 27 ~~~~p~~i~~-----~~g~~~~~v~~~--~~~~~~speev~a~iL~~lk~~ 70 (74)
...+||-++- ++|.+.+..... ++...++.+++.+++...+...
T Consensus 58 ~~kvPy~lVVG~kE~e~~sVsVR~r~~~~~e~~~m~lde~i~~l~~~~~~~ 108 (130)
T 1v95_A 58 RGGSPFAIVITQQHQIHRSCTVNIMFGTPQEHRNMPQADAMVLVARNYERY 108 (130)
T ss_dssp HHTCSEEEEECHHHHHHTEEEEEECSSSCCEEEEEEHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEEechHHhcCeeEEEecCCCCCccCccCHHHHHHHHHHHHHHH
Confidence 4679999752 357777765554 4556799999999998777653
No 11
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=72.91 E-value=2.9 Score=24.78 Aligned_cols=36 Identities=17% Similarity=-0.058 Sum_probs=25.0
Q ss_pred hcchhhcCCCCCChHHHhhcccCCeEEEe-CCCcceEE
Q psy6083 8 FDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQ 44 (74)
Q Consensus 8 ~~~KrliG~~~~d~~v~~~~~~~p~~i~~-~~g~~~~~ 44 (74)
.-++|++|+.... .++...+..+|+|.- .||.+|+.
T Consensus 100 ~~v~rl~~~~~~~-~l~~l~~~~~~ei~vG~NG~IWi~ 136 (175)
T 2ja9_A 100 NFARQLLFNNDFP-LLKVLAAHTKFEVAIGLNGKIWVK 136 (175)
T ss_dssp HHHHHHHHCTTCC-HHHHHHTTCCCEEEEETTTEEEEE
T ss_pred HHhhHHhcCCCcc-hHHhhhccCCeEEEEECCcEEEEe
Confidence 4568899854332 455555678999865 89998865
No 12
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=66.31 E-value=3.3 Score=26.54 Aligned_cols=35 Identities=17% Similarity=0.154 Sum_probs=25.4
Q ss_pred hcchhhcCCCCCChHHHhhcccCCeEEEe-CCCcceEE
Q psy6083 8 FDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQ 44 (74)
Q Consensus 8 ~~~KrliG~~~~d~~v~~~~~~~p~~i~~-~~g~~~~~ 44 (74)
.-++|++|+.. ..++...+.++|+|.- .||.+|+.
T Consensus 219 ~lvrrl~~~~~--~~l~~L~~~~~~eI~vG~NG~IWI~ 254 (289)
T 2nn6_G 219 GLIRKLLAPDC--EIIQEVGKLYPLEIVFGMNGRIWVK 254 (289)
T ss_dssp HHHHHHHCTTC--SHHHHTTCSSSCCCEEETTTEEEEC
T ss_pred HHhhhhhcCch--hHHHHhcccCCeEEEEECCcEEEEe
Confidence 45789998754 3455555678999865 89998865
No 13
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Probab=63.41 E-value=7.7 Score=23.67 Aligned_cols=34 Identities=12% Similarity=-0.071 Sum_probs=23.7
Q ss_pred EeCCCcceEEEEECCeeEEEchhhhHHHHHHHHHHHHh
Q psy6083 35 VNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAL 72 (74)
Q Consensus 35 ~~~~g~~~~~v~~~~~~~~~speev~a~iL~~lk~~ae 72 (74)
++++|.+..... .++..|.|+++++|+++++.|.
T Consensus 18 ~d~~~~il~~~~----~~~g~~~e~a~~vl~~~~~~a~ 51 (276)
T 4ehu_A 18 LKNGEDIVASET----ISSGTGTTGPSRVLEKLYGKTG 51 (276)
T ss_dssp EETTTEEEEEEE----ESCCTTSSHHHHHHHHHHHHHC
T ss_pred EECCCeEEEEEE----ecCCCCHHHHHHHHHHHHHHCC
Confidence 345566555442 2346789999999999998875
No 14
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=61.54 E-value=3.1 Score=25.58 Aligned_cols=35 Identities=17% Similarity=0.105 Sum_probs=24.7
Q ss_pred hcchhhcCCCCCChHHHhhcccCCeEEEe-CCCcceEE
Q psy6083 8 FDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQ 44 (74)
Q Consensus 8 ~~~KrliG~~~~d~~v~~~~~~~p~~i~~-~~g~~~~~ 44 (74)
..++|++|+.- ..++...+.++|+|.- .||.+|+.
T Consensus 145 ~~v~rl~~~~~--~~l~~l~~~~~~ei~vG~NG~IWi~ 180 (229)
T 2ba0_A 145 ARVPRVIGKKG--SMIKLLKSELDVQIVVGQNGLIWVN 180 (229)
T ss_dssp GGHHHHHCGGG--HHHHHHHHHHTCEEEECTTSEEEEE
T ss_pred HHhHHHhcCCc--hHHHHhcccCCeEEEEECCcEEEEe
Confidence 45788998642 3455555578999865 89998875
No 15
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=53.14 E-value=4.4 Score=25.28 Aligned_cols=36 Identities=8% Similarity=0.066 Sum_probs=21.5
Q ss_pred hcchhhcCCCCCChHHHhhcccCCeEEEe-CCCcceEEE
Q psy6083 8 FDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQV 45 (74)
Q Consensus 8 ~~~KrliG~~~~d~~v~~~~~~~p~~i~~-~~g~~~~~v 45 (74)
..++|+||+.- ..++...+.++|+|.- .||.+|+.-
T Consensus 164 ~~v~rl~~~~~--~~l~~l~~~~~~ei~vG~NG~IWi~~ 200 (251)
T 2je6_I 164 VKVPRVIGKNK--SMYETLTSKSGCSIFVANNGRIWATC 200 (251)
T ss_dssp GGHHHHHCGGG--HHHHHHHTTC---CEECTTSEEEC--
T ss_pred HHhHHHhcCcc--hHHHHhcccCCeEEEEECCcEEEEeC
Confidence 46789998642 3455555678999854 899999764
No 16
>1hgv_A PH75 inovirus major coat protein; virus coat protein, helical virus coat protein, ssDNA viruses, filamentous bacteriophage, thermophiles; 2.4A {Bacteriophage PH75} SCOP: h.1.4.1 PDB: 1hgz_A 1hh0_A
Probab=46.85 E-value=4.9 Score=18.28 Aligned_cols=19 Identities=32% Similarity=0.503 Sum_probs=14.8
Q ss_pred EchhhhHHHHHHHHHHHHh
Q psy6083 54 FAPEEISSMVLTKMKETAL 72 (74)
Q Consensus 54 ~speev~a~iL~~lk~~ae 72 (74)
|.|.||++.+..++--+|.
T Consensus 3 fnpseia~~v~~yi~~iaa 21 (46)
T 1hgv_A 3 FNPSEVASQVTNYIQAIAA 21 (46)
T ss_dssp SCTHHHHHHHHTTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 6789999888887776653
No 17
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=46.45 E-value=11 Score=23.04 Aligned_cols=35 Identities=14% Similarity=0.223 Sum_probs=23.7
Q ss_pred hcchhhcCCCCCChHHHhhcccCCeEEEe-CCCcceEE
Q psy6083 8 FDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQ 44 (74)
Q Consensus 8 ~~~KrliG~~~~d~~v~~~~~~~p~~i~~-~~g~~~~~ 44 (74)
..++|++|+.- ..+....+..+|++.- .||.+|+.
T Consensus 157 ~~~~rl~~~~~--~~l~~l~~~~~~~i~vG~NG~IWi~ 192 (235)
T 2z0s_A 157 AKVPRVIGRKM--SMLKTLEEKTECKIFVARNGRIHLE 192 (235)
T ss_dssp GGSGGGTCGGG--HHHHHHHHHHCCEEEEETTTEEEEE
T ss_pred HHhHHHhcCcc--hHHHHhcccCCeEEEEeCCCEEEEe
Confidence 56788888642 3344444467999854 89998865
No 18
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=46.36 E-value=6.1 Score=17.97 Aligned_cols=10 Identities=40% Similarity=0.986 Sum_probs=7.9
Q ss_pred EEchhhhHHH
Q psy6083 53 TFAPEEISSM 62 (74)
Q Consensus 53 ~~speev~a~ 62 (74)
-|||||+++.
T Consensus 16 gfspeelaal 25 (48)
T 1g6u_A 16 GFSPEELAAL 25 (48)
T ss_dssp TCSHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 3899999774
No 19
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=40.88 E-value=30 Score=23.79 Aligned_cols=44 Identities=16% Similarity=0.183 Sum_probs=28.8
Q ss_pred hcccCCeEEEe-----CCCcceEEEEECCeeEEEchhhhHHHHHHHHHH
Q psy6083 26 DMKHWPFTVVN-----DCSKPKIQVEFKGERKTFAPEEISSMVLTKMKE 69 (74)
Q Consensus 26 ~~~~~p~~i~~-----~~g~~~~~v~~~~~~~~~speev~a~iL~~lk~ 69 (74)
++..+||.|+- ++|.+.+.-...++...++.+++.+.+-..|.+
T Consensus 366 el~GiP~~ivIG~kele~g~V~vr~R~tgeq~~v~~~el~~~l~~ll~~ 414 (519)
T 4hvc_A 366 ELKGVPIRLEVGPRDMKSCQFVAVRRDTGEKLTVAENEAETKLQAILED 414 (519)
T ss_dssp HHTTCSEEEEECHHHHHHTEEEEEETTTCCEEEEEGGGHHHHHHHHHHH
T ss_pred HhcCCCEEEEECchhhcCCeEEEEECCCCCccceeHHHHHHHHHHHHHH
Confidence 46679999753 245554444335566778999988877655544
No 20
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=40.81 E-value=40 Score=17.68 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=21.2
Q ss_pred cccCCeEEEeCCCcceEEEEECC-eeEEEchhhh
Q psy6083 27 MKHWPFTVVNDCSKPKIQVEFKG-ERKTFAPEEI 59 (74)
Q Consensus 27 ~~~~p~~i~~~~g~~~~~v~~~~-~~~~~speev 59 (74)
.+.+|.+|..-+|...+.|.+.+ ..+.+.+.+|
T Consensus 35 ~~yYPAkI~sV~~~~~YtV~F~DG~~etvk~~~I 68 (85)
T 3qii_A 35 CRFYPAKVTAVNKDGTYTVKFYDGVVQTVKHIHV 68 (85)
T ss_dssp SCEEEEEEEEECTTSEEEEEETTSCEEEEEGGGE
T ss_pred CCEeeEEEEEECCCCeEEEEEeCCCeEEecHHHc
Confidence 45678888774454568887754 4566666655
No 21
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=40.62 E-value=54 Score=22.26 Aligned_cols=45 Identities=22% Similarity=0.231 Sum_probs=29.6
Q ss_pred hcccCCeEEEe-----CCCcceEEEEECCeeEEEchhhhHHHHHHHHHHH
Q psy6083 26 DMKHWPFTVVN-----DCSKPKIQVEFKGERKTFAPEEISSMVLTKMKET 70 (74)
Q Consensus 26 ~~~~~p~~i~~-----~~g~~~~~v~~~~~~~~~speev~a~iL~~lk~~ 70 (74)
++...||.|+- .+|.+.+.-...++...++.+++.+.+...|.++
T Consensus 366 ~~~G~p~~iiiG~~e~~~~~V~vr~r~t~eq~~v~~~el~~~l~~~l~~~ 415 (501)
T 1nj1_A 366 EMRGVPLRVEIGPRDLEKGAAVISRRDTGEKVTADLQGIEETLRELMKDI 415 (501)
T ss_dssp HHEECSEEEEECHHHHTTTEEEEEESSSCCEEEEETTTHHHHHHHHHHHH
T ss_pred HhcCCCEEEEECcchhhCCEEEEEECCCCceEEEeHHHHHHHHHHHHHHH
Confidence 45679999752 3566555443345567789999988776655543
No 22
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=36.89 E-value=48 Score=22.19 Aligned_cols=45 Identities=11% Similarity=0.128 Sum_probs=29.5
Q ss_pred hcccCCeEEEe-----CCCcceEEEEECCeeEEEchhhhHHHHHHHHHHH
Q psy6083 26 DMKHWPFTVVN-----DCSKPKIQVEFKGERKTFAPEEISSMVLTKMKET 70 (74)
Q Consensus 26 ~~~~~p~~i~~-----~~g~~~~~v~~~~~~~~~speev~a~iL~~lk~~ 70 (74)
++...||.|+- .+|.+.+.-...++...++.+++...+...+.++
T Consensus 333 ~~~G~p~~iiiG~~el~~~~V~vr~r~t~eq~~v~~~el~~~l~~~l~~~ 382 (459)
T 1nj8_A 333 EIKGVPLRIEVGPKDIENKKITLFRRDTMEKFQVDETQLMEVVEKTLNNI 382 (459)
T ss_dssp HHTTCSEEEEECHHHHHTTEEEEEETTTCCEEEEETTSHHHHHHHHHHHH
T ss_pred HHcCCCEEEEECcchhcCCEEEEEECCCCceEEEeHHHHHHHHHHHHHHH
Confidence 45678999752 3566555433345567789999988776666554
No 23
>3osj_A Phycobilisome LCM core-membrane linker polypeptid; structural genomics, PSI-biology; 2.30A {Synechocystis SP} PDB: 2l06_A
Probab=35.10 E-value=13 Score=21.52 Aligned_cols=13 Identities=15% Similarity=0.404 Sum_probs=10.3
Q ss_pred hcchhhcCCCCCC
Q psy6083 8 FDAKRLIGRKFDD 20 (74)
Q Consensus 8 ~~~KrliG~~~~d 20 (74)
..+||||||...+
T Consensus 92 l~~khlLGR~p~~ 104 (147)
T 3osj_A 92 LAFRHILGRGPSS 104 (147)
T ss_dssp HHHHHHHSSCCCC
T ss_pred HHhhhhcCCCCCC
Confidence 3689999997655
No 24
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=34.71 E-value=54 Score=18.01 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=25.5
Q ss_pred CCeEEEeCCCcceEEEEECC--e-eEEEchhhhHHHHHHHHHHH
Q psy6083 30 WPFTVVNDCSKPKIQVEFKG--E-RKTFAPEEISSMVLTKMKET 70 (74)
Q Consensus 30 ~p~~i~~~~g~~~~~v~~~~--~-~~~~speev~a~iL~~lk~~ 70 (74)
+-|.+-++.|...+.|-... + -+.+.||+++.+. ++|.+.
T Consensus 58 L~F~vdee~~~~vVkVvD~~TgEVIRqIPpEe~L~l~-~~l~e~ 100 (117)
T 2hc5_A 58 LKFELHDKLNEYYVKVIEDSTNEVIREIPPKRWLDFY-AAMTEF 100 (117)
T ss_dssp EEEEEEEETTEEEEEEEETTTTEEEEEECHHHHHHHH-HHHHHH
T ss_pred eEEEEecCCCcEEEEEEECCCCcEEEeCChHHHHHHH-HHHHHh
Confidence 44666666788888876533 2 2678999987653 445443
No 25
>2ky4_A Phycobilisome linker polypeptide; NESG, PSI, structural genomics, protein structure initiative northeast structural genomics consortium; NMR {Nostoc SP}
Probab=34.62 E-value=14 Score=21.42 Aligned_cols=13 Identities=31% Similarity=0.496 Sum_probs=10.2
Q ss_pred hcchhhcCCCCCC
Q psy6083 8 FDAKRLIGRKFDD 20 (74)
Q Consensus 8 ~~~KrliG~~~~d 20 (74)
..+|+||||...+
T Consensus 84 l~~khlLGRap~~ 96 (149)
T 2ky4_A 84 LGTKHFLGRAPID 96 (149)
T ss_dssp HHHHHHTSSCCCS
T ss_pred HhhhhccCCCCCC
Confidence 3689999998655
No 26
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=34.12 E-value=47 Score=22.59 Aligned_cols=44 Identities=9% Similarity=0.125 Sum_probs=27.6
Q ss_pred hcccCCeEEEe-----CCCcceEEEEECCeeEEEchhhhHHHHHHHHHH
Q psy6083 26 DMKHWPFTVVN-----DCSKPKIQVEFKGERKTFAPEEISSMVLTKMKE 69 (74)
Q Consensus 26 ~~~~~p~~i~~-----~~g~~~~~v~~~~~~~~~speev~a~iL~~lk~ 69 (74)
++...||.|+- ++|.+.+.-...++...++.+++.+.|...+..
T Consensus 401 d~iGiPy~IiVG~kEle~g~VtVR~Rdtgeq~~v~ldeli~~l~~~i~~ 449 (459)
T 3ikl_A 401 DEMSILFTVLVTETTLENGLIHLRSRDTTMKEMMHISKLKDFLIKYISS 449 (459)
T ss_dssp GGGTCSEEEEECTTSTTSSEEEEEETTTCCCCCEETTHHHHHHHHHHHH
T ss_pred HHcCCCEEEEECchhhhCCEEEEEECCCCceEEEEHHHHHHHHHHHHhh
Confidence 45678999753 245444443234455678999998877665554
No 27
>3ohw_B Phycobilisome LCM core-membrane linker polypeptid; structural genomics, PSI-biology; 2.70A {Synechocystis SP}
Probab=33.58 E-value=15 Score=21.28 Aligned_cols=13 Identities=23% Similarity=0.417 Sum_probs=10.2
Q ss_pred hcchhhcCCCCCC
Q psy6083 8 FDAKRLIGRKFDD 20 (74)
Q Consensus 8 ~~~KrliG~~~~d 20 (74)
..+||||||...+
T Consensus 93 l~~khlLGRap~~ 105 (148)
T 3ohw_B 93 MGTKHFLGRAPLN 105 (148)
T ss_dssp HHHHHHTSSCCSC
T ss_pred HHhhhhcCCCCCC
Confidence 3689999997655
No 28
>3nph_B Phycobilisome 32.1 kDa linker polypeptide, phycoc associated, ROD 2; PFAM00427 domain, linker protein, phycobiliprotein, photosyn; 1.85A {Synechocystis SP} PDB: 2l3w_A
Probab=32.83 E-value=13 Score=21.53 Aligned_cols=13 Identities=38% Similarity=0.554 Sum_probs=10.2
Q ss_pred hcchhhcCCCCCC
Q psy6083 8 FDAKRLIGRKFDD 20 (74)
Q Consensus 8 ~~~KrliG~~~~d 20 (74)
..+||||||...+
T Consensus 81 l~~khlLGRap~~ 93 (148)
T 3nph_B 81 LNYKHLLGRAPYD 93 (148)
T ss_dssp HHHHHHTSSCCSS
T ss_pred HHhhhhcCCCCCC
Confidence 4689999997655
No 29
>3pru_C Phycobilisome 32.1 kDa linker polypeptide, phycoc associated, ROD 1; structural genomics, PSI-biology; 2.68A {Synechocystis SP} PDB: 2l8v_A
Probab=31.90 E-value=16 Score=21.39 Aligned_cols=13 Identities=31% Similarity=0.404 Sum_probs=10.2
Q ss_pred hcchhhcCCCCCC
Q psy6083 8 FDAKRLIGRKFDD 20 (74)
Q Consensus 8 ~~~KrliG~~~~d 20 (74)
..+||||||...+
T Consensus 86 l~~khlLGR~p~~ 98 (154)
T 3pru_C 86 LNYKHLLGRAPFS 98 (154)
T ss_dssp HHHHHHHSSCCSC
T ss_pred HHHHHhhCCCCCC
Confidence 3689999997655
No 30
>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus horikoshii}
Probab=30.98 E-value=34 Score=22.24 Aligned_cols=39 Identities=13% Similarity=0.290 Sum_probs=29.1
Q ss_pred hhcchhhcCCCCCChHHHhhcccCCeEEEeCCCcceEEEEE
Q psy6083 7 VFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEF 47 (74)
Q Consensus 7 i~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~g~~~~~v~~ 47 (74)
...+.|++|..++...+...++++-|.+...++. +.|..
T Consensus 287 ~~~i~~~lG~~l~~~~i~~iL~~lg~~~~~~~~~--~~V~v 325 (348)
T 2cxi_A 287 LDYIRKLSGLELNDGEIKELLEKMMYEVEISRGR--AKLKY 325 (348)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHTTCEEEEETTE--EEEEE
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCCeEEeCCCe--EEEEC
Confidence 4567899999999989998899999998543333 44443
No 31
>3mgb_A TEG12; sulfotransferase, glycopeptide, antibiotic, transferase-anti complex; HET: GHP 3MY 3FG OMY PAP; 2.04A {Uncultured soil bacterium} PDB: 3mgc_A* 3mg9_A* 3nib_A*
Probab=27.99 E-value=12 Score=24.24 Aligned_cols=32 Identities=13% Similarity=0.232 Sum_probs=25.5
Q ss_pred Ccccchhcchhhc--CCCCCChHHHhhcccCCeE
Q psy6083 2 NPKNTVFDAKRLI--GRKFDDPKIQQDMKHWPFT 33 (74)
Q Consensus 2 np~nti~~~Krli--G~~~~d~~v~~~~~~~p~~ 33 (74)
||..++..+-+|| |..+++..++...++..|+
T Consensus 207 Dp~~~v~kI~~FL~~G~~~~~e~l~~iv~~~SFe 240 (319)
T 3mgb_A 207 DPVARFSEIVEFLDLGGPVDIEDIRRAVAASTLE 240 (319)
T ss_dssp CHHHHHHHHHHHHTCSSCCCHHHHHHHHHTTSHH
T ss_pred hHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCHH
Confidence 5777888888999 9999988887766666654
No 32
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=27.65 E-value=64 Score=16.03 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=20.6
Q ss_pred cccCCeEEEeCCCcceEEEEECC-eeEEEchhhh
Q psy6083 27 MKHWPFTVVNDCSKPKIQVEFKG-ERKTFAPEEI 59 (74)
Q Consensus 27 ~~~~p~~i~~~~g~~~~~v~~~~-~~~~~speev 59 (74)
.+.+|.+|..-+|...+.|.+.+ ..+.+.+.+|
T Consensus 20 ~~yYpA~I~si~~~~~Y~V~F~dG~~etvk~~~i 53 (67)
T 3p8d_A 20 CRFYPAKVTAVNKDGTYTVKFYDGVVQTVKHIHV 53 (67)
T ss_dssp SCEEEEEEEEECTTSEEEEEETTSCEEEEEGGGE
T ss_pred CCEeeEEEEEECCCCeEEEEEeCCceEEEeHHHc
Confidence 45678888774444557777654 4556666554
No 33
>2wzo_A Transforming growth factor beta regulator 1; nucleus, cell cycle, tumor suppressor; 1.60A {Homo sapiens}
Probab=27.31 E-value=88 Score=17.54 Aligned_cols=39 Identities=8% Similarity=0.188 Sum_probs=28.3
Q ss_pred eEEEeCCCcceEEEEECCe----eEEEchhhhHHHHHHHHHHH
Q psy6083 32 FTVVNDCSKPKIQVEFKGE----RKTFAPEEISSMVLTKMKET 70 (74)
Q Consensus 32 ~~i~~~~g~~~~~v~~~~~----~~~~speev~a~iL~~lk~~ 70 (74)
.+|.+.++.+.|+|...+. -.--||++.-.++|+.+.+.
T Consensus 58 c~I~d~~~~P~F~V~~e~~~~~~~~g~Sp~~~W~~il~~i~~~ 100 (146)
T 2wzo_A 58 CQIKDGGVQPQFEIVPEDDPQNAIVSSSADACHAELLRTISTT 100 (146)
T ss_dssp EEEEECSSSEEEEEEETTCGGGCEEESSHHHHHHHHHHHHHHH
T ss_pred EEEEECCCcceeEEEecCCCCceEEeCChHHHHHHHHHHHHHH
Confidence 4555556789999986543 23458999999999988764
No 34
>1o8r_A Guanylin; prohormone, GAP-I, precursor, prosequence; NMR {Homo sapiens} SCOP: d.234.1.1
Probab=27.15 E-value=45 Score=17.84 Aligned_cols=14 Identities=21% Similarity=0.309 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhc
Q psy6083 60 SSMVLTKMKETALY 73 (74)
Q Consensus 60 ~a~iL~~lk~~ae~ 73 (74)
+++||.+|..+|+.
T Consensus 66 A~~il~RL~~Ia~d 79 (94)
T 1o8r_A 66 AQEILQRLEEIAED 79 (94)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcCC
Confidence 78999999999875
No 35
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=27.08 E-value=13 Score=19.75 Aligned_cols=15 Identities=20% Similarity=0.215 Sum_probs=12.7
Q ss_pred CcccchhcchhhcCC
Q psy6083 2 NPKNTVFDAKRLIGR 16 (74)
Q Consensus 2 np~nti~~~KrliG~ 16 (74)
+|..||.++|.+|..
T Consensus 39 ~p~DTI~~LK~~I~~ 53 (93)
T 3plu_A 39 LGEDSVGDFKKVLSL 53 (93)
T ss_dssp ETTSBHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHH
Confidence 588999999998853
No 36
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=25.58 E-value=52 Score=22.12 Aligned_cols=43 Identities=12% Similarity=0.144 Sum_probs=27.7
Q ss_pred hcccCCeEEEe-----CCCcceEEEEECCe-eEEEchhhhHHHHHHHHH
Q psy6083 26 DMKHWPFTVVN-----DCSKPKIQVEFKGE-RKTFAPEEISSMVLTKMK 68 (74)
Q Consensus 26 ~~~~~p~~i~~-----~~g~~~~~v~~~~~-~~~~speev~a~iL~~lk 68 (74)
++..+||-|+- ++|.+.+.-...++ ...++.+++.+.+-..++
T Consensus 409 d~~g~p~~ivvG~~E~~~g~Vtvr~r~~~e~q~~v~~~el~~~l~~~~~ 457 (460)
T 3uh0_A 409 ILKNYSYLIIVGDEEVQLQKYNIRERDNRKSFEKLTMSQIWEKFIELEK 457 (460)
T ss_dssp HHHTCSEEEEECHHHHHHTCEEEEEGGGTTSCEEECHHHHHHHHHHHHH
T ss_pred HHcCCCEEEEEcchhhhCCeEEEEECCCCceeEEeeHHHHHHHHHHHHH
Confidence 45678999752 25665555433455 577899998776655443
No 37
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=25.51 E-value=68 Score=21.53 Aligned_cols=44 Identities=7% Similarity=0.107 Sum_probs=28.3
Q ss_pred hcccCCeEEEe-----CCCcceEEEEECCeeEEEchhhhHHHHHHHHHH
Q psy6083 26 DMKHWPFTVVN-----DCSKPKIQVEFKGERKTFAPEEISSMVLTKMKE 69 (74)
Q Consensus 26 ~~~~~p~~i~~-----~~g~~~~~v~~~~~~~~~speev~a~iL~~lk~ 69 (74)
++...||.|+- ++|.+.+.-...++...++.+++.+.+...+..
T Consensus 391 d~~GiP~~IiVG~~Ele~g~VtvR~r~t~eq~~v~l~el~~~l~~~l~~ 439 (454)
T 1g5h_A 391 DEMSVLFSVLVTETTLENGLIQLRSRDTTMKEMMHISKLRDFLVKYLAS 439 (454)
T ss_dssp HHTTCSEEEEECHHHHHHCEEEEEETTTCCEEEEETTSHHHHHHHHHHH
T ss_pred HHcCCCEEEEECcchhhCCEEEEEECCCCcEEEEEHHHHHHHHHHHHhc
Confidence 45678999752 256544443234456778999998887665543
No 38
>1w53_A Phosphoserine phosphatase RSBU; stress, kinase, hydrolase; 1.6A {Bacillus subtilis} SCOP: a.186.1.2
Probab=25.05 E-value=47 Score=17.31 Aligned_cols=19 Identities=37% Similarity=0.459 Sum_probs=15.3
Q ss_pred EEEchhhhHHHHHHHHHHH
Q psy6083 52 KTFAPEEISSMVLTKMKET 70 (74)
Q Consensus 52 ~~~speev~a~iL~~lk~~ 70 (74)
+.++||||.+.--..+.+.
T Consensus 40 k~i~PEeiV~iHk~~i~el 58 (84)
T 1w53_A 40 HQIPPEEIISIHRKVLKEL 58 (84)
T ss_dssp TTCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHh
Confidence 4579999999888877765
No 39
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=24.46 E-value=13 Score=16.83 Aligned_cols=13 Identities=15% Similarity=0.370 Sum_probs=10.2
Q ss_pred chhhhHHHHHHHH
Q psy6083 55 APEEISSMVLTKM 67 (74)
Q Consensus 55 speev~a~iL~~l 67 (74)
-|+||...||.+|
T Consensus 12 LP~eil~~I~~~L 24 (53)
T 1fs1_A 12 LPDELLLGIFSCL 24 (53)
T ss_dssp SCHHHHHHHHTTS
T ss_pred CCHHHHHHHHHcC
Confidence 5788888888765
No 40
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=24.38 E-value=39 Score=14.33 Aligned_cols=13 Identities=62% Similarity=0.833 Sum_probs=9.4
Q ss_pred chhhhHHHHHHHHHHHHh
Q psy6083 55 APEEISSMVLTKMKETAL 72 (74)
Q Consensus 55 speev~a~iL~~lk~~ae 72 (74)
+||| |++||+.|.
T Consensus 13 tpee-----lkklkeeak 25 (36)
T 2ki0_A 13 TPEE-----LKKLKEEAK 25 (36)
T ss_dssp CHHH-----HHHHHHHHH
T ss_pred CHHH-----HHHHHHHHH
Confidence 5766 588888775
No 41
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=23.10 E-value=1.4e+02 Score=20.96 Aligned_cols=43 Identities=9% Similarity=0.268 Sum_probs=28.1
Q ss_pred hcccCCeEEEe-----CCCcceEEEEECCeeEEEchhhhHHHHHHHHH
Q psy6083 26 DMKHWPFTVVN-----DCSKPKIQVEFKGERKTFAPEEISSMVLTKMK 68 (74)
Q Consensus 26 ~~~~~p~~i~~-----~~g~~~~~v~~~~~~~~~speev~a~iL~~lk 68 (74)
++...||-++- ++|.+.++-...++...++.+++.+.+...+.
T Consensus 586 ~~~g~p~~ivvG~~E~~~~~V~vr~r~~~~~~~v~~~e~~~~l~~~~~ 633 (642)
T 1qf6_A 586 TLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQEIR 633 (642)
T ss_dssp HHTTCSEEEEECTTTGGGCCEEEEESSSCEEEEECHHHHHHHHHHHHH
T ss_pred HHcCCCEEEEECchhhhcCeEEEEECCCCceEEEEHHHHHHHHHHHHh
Confidence 45678999753 24655555433455677899999887765554
No 42
>2x5c_A Hypothetical protein ORF131; viral protein; HET: GOL; 1.80A {Pyrobaculum spherical virus}
Probab=22.99 E-value=99 Score=16.65 Aligned_cols=36 Identities=11% Similarity=0.220 Sum_probs=21.2
Q ss_pred eEEEe-CCCcceEEEEECCeeEE-EchhhhHHHHHHHHH
Q psy6083 32 FTVVN-DCSKPKIQVEFKGERKT-FAPEEISSMVLTKMK 68 (74)
Q Consensus 32 ~~i~~-~~g~~~~~v~~~~~~~~-~speev~a~iL~~lk 68 (74)
..|++ .||.-.+.+...+...+ +.-.+|+| ||+.|-
T Consensus 64 vsivetkngykylvirhpdggthtvpktdisa-ilkelc 101 (131)
T 2x5c_A 64 VSIVETKNGYKYLVIRHPDGGTHTVPKTDISA-ILKELC 101 (131)
T ss_dssp EEEEECTTSCEEEEEECTTSCEEECCTTCCHH-HHHHHH
T ss_pred eEEEEecCCcEEEEEECCCCCccccccccHHH-HHHHHH
Confidence 35666 78887777776554444 44455544 555543
No 43
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=22.72 E-value=94 Score=20.94 Aligned_cols=44 Identities=16% Similarity=0.308 Sum_probs=28.6
Q ss_pred hcccCCeEEEe-----CCCcceEEEEECCeeEEEchhhhHHHHHHHHHHH
Q psy6083 26 DMKHWPFTVVN-----DCSKPKIQVEFKGERKTFAPEEISSMVLTKMKET 70 (74)
Q Consensus 26 ~~~~~p~~i~~-----~~g~~~~~v~~~~~~~~~speev~a~iL~~lk~~ 70 (74)
++...||.|+- .+|.+.+.-.. ++...++.+++.+.+-..|.++
T Consensus 340 ~~~G~p~~iiiG~~el~~~~V~vr~r~-~eq~~v~~~el~~~l~~~l~~~ 388 (477)
T 1hc7_A 340 ELKGVPFRVELGPKDLEGGQAVLASRL-GGKETLPLAALPEALPGKLDAF 388 (477)
T ss_dssp HHTTCSEEEEECHHHHHTTEEEEEETT-SCCCEEEGGGHHHHHHHHHHHH
T ss_pred hhcCCCEEEEECcchhcCCEEEEEEec-CceEEEeHHHHHHHHHHHHHHH
Confidence 45678999752 36665555433 5567789999888776555443
No 44
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=21.61 E-value=56 Score=13.26 Aligned_cols=11 Identities=36% Similarity=0.736 Sum_probs=8.3
Q ss_pred hhhHHHHHHHH
Q psy6083 57 EEISSMVLTKM 67 (74)
Q Consensus 57 eev~a~iL~~l 67 (74)
||++|.++.+.
T Consensus 5 Ee~aA~vIQrA 15 (27)
T 2kxw_B 5 EEVSAIVIQRA 15 (27)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 67888887754
No 45
>1hyw_A GPW, head-TO-tail joining protein W; novel fold, two helices, one two-stranded beta-sheet, viral protein; NMR {Enterobacteria phage lambda} SCOP: d.186.1.1 PDB: 2l6q_A 2l6r_A
Probab=21.59 E-value=88 Score=15.53 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=15.4
Q ss_pred CcceEEEEECCeeEEEchhhh
Q psy6083 39 SKPKIQVEFKGERKTFAPEEI 59 (74)
Q Consensus 39 g~~~~~v~~~~~~~~~speev 59 (74)
|.-.++|.++|..-.|+...+
T Consensus 20 G~~~vsV~ydgr~V~Y~~asi 40 (68)
T 1hyw_A 20 GKRVATVQKDGRRVEFTATSV 40 (68)
T ss_dssp SCCCEEEECSSCEEEECTTTH
T ss_pred CCceEEEEECCEEEEEecCCH
Confidence 555688888887888876555
No 46
>1aqu_A EST, estrogen sulfotransferase; PAP, sulfonation, 17-beta estradiol, steroid-binding; HET: A3P EST; 1.60A {Mus musculus} SCOP: c.37.1.5 PDB: 1aqy_A* 1bo6_A* 1hy3_A* 1g3m_A*
Probab=21.47 E-value=19 Score=22.43 Aligned_cols=30 Identities=13% Similarity=0.201 Sum_probs=21.7
Q ss_pred CcccchhcchhhcCCCCCChHHHhhcccCC
Q psy6083 2 NPKNTVFDAKRLIGRKFDDPKIQQDMKHWP 31 (74)
Q Consensus 2 np~nti~~~KrliG~~~~d~~v~~~~~~~p 31 (74)
||..++..+-+|||..+++..++...++..
T Consensus 201 dp~~~~~~i~~FLG~~~~~~~l~~iv~~~s 230 (297)
T 1aqu_A 201 DIRREVVKLIEFLERKPSAELVDRIIQHTS 230 (297)
T ss_dssp CHHHHHHHHHHHTTCCCCHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHhCC
Confidence 567778888899999998876665433333
No 47
>1s3a_A NADH-ubiquinone oxidoreductase B8 subunit; CI-B8, ndufa2, complex I; NMR {Homo sapiens} SCOP: c.47.1.22
Probab=20.95 E-value=1e+02 Score=16.10 Aligned_cols=42 Identities=10% Similarity=0.358 Sum_probs=25.3
Q ss_pred hHHHhhcccCCeEEEeCCC-cceEEEEEC-CeeEEE-----chhhhHHH
Q psy6083 21 PKIQQDMKHWPFTVVNDCS-KPKIQVEFK-GERKTF-----APEEISSM 62 (74)
Q Consensus 21 ~~v~~~~~~~p~~i~~~~g-~~~~~v~~~-~~~~~~-----speev~a~ 62 (74)
|.++.....+|+.+....| .|.+...|. |.++.+ +++||...
T Consensus 45 ~~~k~~NP~v~i~v~~~~~~~P~i~a~Y~~G~ek~i~l~n~s~~eI~~~ 93 (102)
T 1s3a_A 45 VELKKANPDLPILIRECSDVQPKLWARYAFGQETNVPLNNFSADQVTRA 93 (102)
T ss_dssp HHHHHHSTTCCEEEECCCSSSCEEEEEESSCCEEEEECTTCCHHHHHHH
T ss_pred HHHHHHCCCceEEEEECCCCCCEEEEEECCCCEEEEECCCCCHHHHHHH
Confidence 4566666677777665434 678888874 444444 56666433
No 48
>3bfx_A Sulfotransferase 1C2; PAP, structural genomics, PSI, protein structure initiative, structural genomics consortium, SGC, alternative splicing; HET: A3P; 1.80A {Homo sapiens} SCOP: c.37.1.5
Probab=20.54 E-value=20 Score=22.21 Aligned_cols=27 Identities=19% Similarity=0.521 Sum_probs=20.5
Q ss_pred CcccchhcchhhcCCCCCChHHHhhcc
Q psy6083 2 NPKNTVFDAKRLIGRKFDDPKIQQDMK 28 (74)
Q Consensus 2 np~nti~~~KrliG~~~~d~~v~~~~~ 28 (74)
+|..++..+-++||..+++..++...+
T Consensus 200 dp~~~~~ri~~FLG~~~~~~~l~~i~~ 226 (296)
T 3bfx_A 200 DPKHEIRKVMQFMGKKVDETVLDKIVQ 226 (296)
T ss_dssp CHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred hhHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 577778888899999998876655333
No 49
>2i3s_B Checkpoint serine/threonine-protein kinase; WD40 protein, beta-propeller, glebs motif, mitotic spindle checkpoint, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=20.45 E-value=21 Score=15.73 Aligned_cols=12 Identities=42% Similarity=0.614 Sum_probs=9.0
Q ss_pred eEEEchhhhHHH
Q psy6083 51 RKTFAPEEISSM 62 (74)
Q Consensus 51 ~~~~speev~a~ 62 (74)
...+|.+||.|+
T Consensus 17 ~~E~s~eEllA~ 28 (36)
T 2i3s_B 17 DEEFNTEEILAM 28 (36)
T ss_dssp SCCCCHHHHHHH
T ss_pred CcEecHHHHHHH
Confidence 457888888874
No 50
>1j99_A Alcohol sulfotransferase; dehydroepiandosterone, DHEA; HET: AND; 1.99A {Homo sapiens} SCOP: c.37.1.5 PDB: 1ov4_A* 3f3y_A* 2qp3_A* 2qp4_A* 1efh_A*
Probab=20.24 E-value=19 Score=22.23 Aligned_cols=31 Identities=13% Similarity=0.323 Sum_probs=22.5
Q ss_pred CcccchhcchhhcCCCCCChHHHhhcccCCe
Q psy6083 2 NPKNTVFDAKRLIGRKFDDPKIQQDMKHWPF 32 (74)
Q Consensus 2 np~nti~~~KrliG~~~~d~~v~~~~~~~p~ 32 (74)
+|..++..+-++||..+++..++...++..|
T Consensus 198 dp~~~~~~i~~FLG~~~~~~~l~~i~~~~sf 228 (293)
T 1j99_A 198 DTGRTIEKICQFLGKTLEPEELNLILKNSSF 228 (293)
T ss_dssp CHHHHHHHHHHHHTCCCCHHHHHHHHHHTCH
T ss_pred CHHHHHHHHHHHcCCCCCHHHHHHHHHhCCH
Confidence 5777788888999999988766654444443
No 51
>1ls6_A ARYL sulfotransferase; SULT 1A1, PAP, P-nitrophenol, positive cooperativity, two substrate binding sites; HET: A3P NPO; 1.90A {Homo sapiens} SCOP: c.37.1.5 PDB: 2d06_A* 3u3o_A* 3u3k_A* 3u3m_A* 3u3j_A* 3u3r_A* 1z28_A* 3qvv_A* 3qvu_A* 1z29_A* 1cjm_A 2a3r_A*
Probab=20.14 E-value=20 Score=22.21 Aligned_cols=31 Identities=19% Similarity=0.439 Sum_probs=22.1
Q ss_pred CcccchhcchhhcCCCCCChHHHhhcccCCe
Q psy6083 2 NPKNTVFDAKRLIGRKFDDPKIQQDMKHWPF 32 (74)
Q Consensus 2 np~nti~~~KrliG~~~~d~~v~~~~~~~p~ 32 (74)
+|..++..+-++||..+++..++...++..|
T Consensus 199 dp~~~~~ri~~FLG~~~~~~~l~~i~~~~sf 229 (295)
T 1ls6_A 199 NPKREIQKILEFVGHSLPEETVDFMVQHTSF 229 (295)
T ss_dssp CHHHHHHHHHHHHTCCCCHHHHHHHHHHTSH
T ss_pred hhHHHHHHHHHHhCCCCCHHHHHHHHHHCCH
Confidence 5777788888999999988766654333333
Done!