RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6083
(74 letters)
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex,
ATP-binding, chaperone, nucleotide-BIND phosphoprotein,
stress response; HET: ADP; 1.30A {Homo sapiens} PDB:
1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A*
1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A*
3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ...
Length = 404
Score = 162 bits (413), Expect = 5e-51
Identities = 54/71 (76%), Positives = 61/71 (85%)
Query: 1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
MNP NT+FDAKRLIGRKF+D +Q DMKHWPF VV++ KPK+QVE+KGE KTF PEEIS
Sbjct: 80 MNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGETKTFFPEEIS 139
Query: 61 SMVLTKMKETA 71
SMVLTKMKE A
Sbjct: 140 SMVLTKMKEIA 150
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP,
chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae}
PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Length = 394
Score = 162 bits (412), Expect = 7e-51
Identities = 41/71 (57%), Positives = 53/71 (74%)
Query: 1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
NP+NT+FD KRLIG K++D +Q+D+KH PF VVN KP ++V KGE+K F PEEIS
Sbjct: 75 ANPQNTIFDIKRLIGLKYNDRSVQKDIKHLPFNVVNKDGKPAVEVSVKGEKKVFTPEEIS 134
Query: 61 SMVLTKMKETA 71
M+L KMK+ A
Sbjct: 135 GMILGKMKQIA 145
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus}
SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Length = 554
Score = 160 bits (408), Expect = 5e-49
Identities = 54/71 (76%), Positives = 61/71 (85%)
Query: 1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
MNP NTVFDAKRLIGR+FDD +Q DMKHWPF VVND +PK+QVE+KGE K+F PEE+S
Sbjct: 61 MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61 SMVLTKMKETA 71
SMVLTKMKE A
Sbjct: 121 SMVLTKMKEIA 131
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 146 bits (370), Expect = 3e-43
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERKTFAPEEI 59
N KNTV + KR+IG + P +Q+ KH+ +V D K +V F GE+ F+ ++
Sbjct: 59 SNIKNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQL 118
Query: 60 SSMVLTKMKETA 71
++M + K+K+T
Sbjct: 119 AAMFIDKVKDTV 130
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor,
coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia
coli} SCOP: c.55.1.1 c.55.1.1
Length = 383
Score = 91.8 bits (229), Expect = 3e-24
Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
NP+NT+F KRLIGR+F D ++Q+D+ PF ++ VE KG + AP +IS
Sbjct: 60 TNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAA-DNGDAWVEVKG--QKMAPPQIS 116
Query: 61 SMVLTKMKETA 71
+ VL KMK+TA
Sbjct: 117 AEVLKKMKKTA 127
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 87.3 bits (217), Expect = 2e-22
Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
NP+NT+F KRLIGR+F D ++Q+D+ PF ++ VE KG + AP +IS
Sbjct: 60 TNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAA-DNGDAWVEVKG--QKMAPPQIS 116
Query: 61 SMVLTKMKETA 71
+ VL KMK+TA
Sbjct: 117 AEVLKKMKKTA 127
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain
rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus
HTA426}
Length = 509
Score = 49.9 bits (120), Expect = 3e-09
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 28/71 (39%)
Query: 1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
NP NT+ KR +G + +VE +G K + P+EIS
Sbjct: 59 TNP-NTIISIKRHMGTDY-------------------------KVEIEG--KQYTPQEIS 90
Query: 61 SMVLTKMKETA 71
+++L +K A
Sbjct: 91 AIILQYLKSYA 101
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 26.0 bits (58), Expect = 0.98
Identities = 6/28 (21%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 11 KRLIGRKFDDPKIQQDMKHW-PFTVVND 37
+ L + D I+ H+ ++VN+
Sbjct: 147 EALQQLQKDSEAIRSQYAHYFDLSLVNN 174
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 26.0 bits (57), Expect = 1.4
Identities = 7/23 (30%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 45 VEFKGERKTFAPEEISSMVLTKM 67
+E G R TF+ +E++ +L +
Sbjct: 689 IEKMGVR-TFSQKEMAFNLLGLL 710
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.3 bits (54), Expect = 1.8
Identities = 4/30 (13%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 40 KPKIQVEFKGERKTFAPEEISSMVLTKMKE 69
K ++ + + K +A + ++ + E
Sbjct: 19 KQALK-KLQASLKLYADDSAPALAIKATME 47
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A
{Saccharomyces cerevisiae} SCOP: a.118.1.9
Length = 480
Score = 24.4 bits (52), Expect = 4.3
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 13 LIGRKFDDPKIQQDMK 28
L RK+ D +++QD+
Sbjct: 327 LSERKYSDEELRQDIS 342
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 23.9 bits (51), Expect = 5.1
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVND 37
+ TV + K+++ + P + +K W V D
Sbjct: 25 LEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVED 61
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ,
RISC, slicer, RNAse H hydrolase-gene regulation complex;
2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10
PDB: 1z25_A 1z26_A
Length = 771
Score = 23.6 bits (50), Expect = 7.2
Identities = 8/31 (25%), Positives = 10/31 (32%)
Query: 1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWP 31
+ + RKF PK D K P
Sbjct: 97 LKENGIGEYELSKLLRKFRKPKTFGDYKVIP 127
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain,
NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.15.1.1
Length = 89
Score = 23.1 bits (50), Expect = 8.2
Identities = 5/29 (17%), Positives = 13/29 (44%)
Query: 1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKH 29
++ K T+ + + + FD Q + +
Sbjct: 26 VSRKATIEELRERVWALFDVRPECQRLFY 54
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.394
Gapped
Lambda K H
0.267 0.0835 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,097,096
Number of extensions: 48811
Number of successful extensions: 128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 17
Length of query: 74
Length of database: 6,701,793
Length adjustment: 44
Effective length of query: 30
Effective length of database: 5,473,269
Effective search space: 164198070
Effective search space used: 164198070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.2 bits)