RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6083
         (74 letters)



>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase
           fragment {Cow (Bos taurus) [TaxId: 9913]}
          Length = 185

 Score =  100 bits (250), Expect = 2e-29
 Identities = 54/71 (76%), Positives = 61/71 (85%)

Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP NTVFDAKRLIGR+FDD  +Q DMKHWPF VVND  +PK+QVE+KGE K+F PEE+S
Sbjct: 58  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 117

Query: 61  SMVLTKMKETA 71
           SMVLTKMKE A
Sbjct: 118 SMVLTKMKEIA 128


>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase
           fragment {Escherichia coli, gene dnaK [TaxId: 562]}
          Length = 183

 Score = 84.3 bits (208), Expect = 4e-23
 Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
            NP+NT+F  KRLIGR+F D ++Q+D+   PF ++         VE KG  +  AP +IS
Sbjct: 58  TNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAA-DNGDAWVEVKG--QKMAPPQIS 114

Query: 61  SMVLTKMKETA 71
           + VL KMK+TA
Sbjct: 115 AEVLKKMKKTA 125


>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus
           furiosus [TaxId: 2261]}
          Length = 322

 Score = 25.9 bits (57), Expect = 0.47
 Identities = 8/19 (42%), Positives = 9/19 (47%)

Query: 13  LIGRKFDDPKIQQDMKHWP 31
            + RKF  PK   D K  P
Sbjct: 107 KLLRKFRKPKTFGDYKVIP 125


>d1ytqa1 b.11.1.1 (A:14-103) beta-Crystallin {Cow (Bos taurus)
          [TaxId: 9913]}
          Length = 90

 Score = 23.6 bits (51), Expect = 1.7
 Identities = 12/67 (17%), Positives = 20/67 (29%), Gaps = 6/67 (8%)

Query: 1  MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKI------QVEFKGERKTF 54
          +NPK  +F+ +   G   +      ++K                     Q   KGE+  F
Sbjct: 1  LNPKIIIFEQENFQGHSHELNGPCPNLKETGVEKAGSVLVQAGPWVGYEQANCKGEQFVF 60

Query: 55 APEEISS 61
             E   
Sbjct: 61 EKGEYPR 67


>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B
          subunit, PccB {Thermotoga maritima [TaxId: 2336]}
          Length = 264

 Score = 23.2 bits (49), Expect = 3.9
 Identities = 6/32 (18%), Positives = 14/32 (43%)

Query: 5  NTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN 36
          N  +D + +I R  D  +  +   ++   +V 
Sbjct: 28 NKGYDVRDVIKRVVDHGEFFEVQPYFAKNIVI 59


>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse
          (Mus musculus) [TaxId: 10090]}
          Length = 105

 Score = 22.3 bits (47), Expect = 5.9
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 2  NPKNTVFDAKRLIGRKFDDPKIQQ 25
              TV D K+ I R     + ++
Sbjct: 25 VQNATVLDLKKAIQRYVQLKQERE 48


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0640    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 274,775
Number of extensions: 10146
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 8
Length of query: 74
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 33
Effective length of database: 1,844,666
Effective search space: 60873978
Effective search space used: 60873978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.1 bits)