BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6084
(106 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2COW|A Chain A, Solution Structure Of The Cap-Gly Domain In Human
Kinesin- Like Protein Kif13b
Length = 100
Score = 78.6 bits (192), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 12 LPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESR 71
+PEW+ GE V + + + GV+ Y+GP +F GTWVGVELD P+GKNDG++ G +YF
Sbjct: 20 VPEWLREGEFVTVGAHKT-GVVRYVGPADFQEGTWVGVELDLPSGKNDGSIGGKQYFRCN 78
Query: 72 PKHGIFVRADKL 83
P +G+ VR ++
Sbjct: 79 PGYGLLVRPSRV 90
>pdb|2CP3|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Human
Clip- 115CYLN2
Length = 84
Score = 74.3 bits (181), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
LG+ VL+ +GV+ Y+G T+FA G W GVELD P GKNDG V GTRYF+ PK G+F
Sbjct: 10 LGDRVLVGG-TKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLF 68
Query: 78 VRADKLIQ 85
K+I+
Sbjct: 69 APIHKVIR 76
>pdb|2CP6|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Human
Clip- 170RESTIN
Length = 172
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
+G+ VL+ +GV+ ++G T+FA G W GVELD P GKNDG V GTRYF+ +PK+G+F
Sbjct: 41 IGDRVLVG-GTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLF 99
Query: 78 VRADKLIQ 85
K+ +
Sbjct: 100 APVHKVTK 107
>pdb|2E4H|A Chain A, Solution Structure Of Cytoskeletal Protein In Complex
With Tubulin Tail
Length = 98
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
+G+ VL+ +GV+ ++G T+FA G W GVELD P GKNDG V GTRYF+ +PK+G+F
Sbjct: 12 IGDRVLVGG-TKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLF 70
Query: 78 VRADKLIQ 85
K+ +
Sbjct: 71 APVHKVTK 78
>pdb|2E3H|A Chain A, Crystal Structure Of The Clip-170 Cap-Gly Domain 2
Length = 90
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
+G+ VL+ +GV+ ++G T+FA G W GVELD P GKNDG V GTRYF+ +PK+G+F
Sbjct: 4 IGDRVLVGG-TKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLF 62
Query: 78 VRADKLIQ 85
K+ +
Sbjct: 63 APVHKVTK 70
>pdb|2CP0|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human
Clip- 170-Related Protein Clipr59
Length = 95
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
LG+ VL+ +G + + G TEFA+G WVGVELD P GKNDG+V G RYF PK G+F
Sbjct: 19 LGDRVLLDG-QKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPPKQGLF 77
Query: 78 VRADKL 83
K+
Sbjct: 78 ASVSKI 83
>pdb|2CP5|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human
Clip- 170RESTIN
Length = 141
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 38/62 (61%)
Query: 28 NSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDR 87
N G I ++G T+FA G W G+ LD P GKNDG+V G RYF+ P GIF R KL +
Sbjct: 76 NKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTRKV 135
Query: 88 RG 89
G
Sbjct: 136 SG 137
>pdb|2CP7|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Mouse
Clip- 170RESTIN
Length = 84
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
+GE V + N G I ++G T+FA G W G+ LD P GKNDG+V G RYF+ P GIF
Sbjct: 10 VGERVWVN-GNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIF 68
Query: 78 VRADKLIQDRRG 89
R KL + G
Sbjct: 69 TRPSKLTRKVSG 80
>pdb|2E3I|A Chain A, Crystal Structure Of The Clip-170 Cap-Gly Domain 1
Length = 86
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
+GE V + N G I ++G T+FA G W G+ LD P GKNDG+V G RYF+ P GIF
Sbjct: 5 VGERVWVN-GNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIF 63
Query: 78 VRADKL 83
R KL
Sbjct: 64 TRPSKL 69
>pdb|3RDV|A Chain A, Structure Of The Slain2c-Clipcg1 Complex
pdb|3RDV|B Chain B, Structure Of The Slain2c-Clipcg1 Complex
pdb|3RDV|C Chain C, Structure Of The Slain2c-Clipcg1 Complex
pdb|3RDV|D Chain D, Structure Of The Slain2c-Clipcg1 Complex
Length = 72
Score = 69.3 bits (168), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
+GE V + N G I ++G T+FA G W G+ LD P GKNDG+V G RYF+ P GIF
Sbjct: 5 VGERVWVNG-NKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIF 63
Query: 78 VRADKL 83
R KL
Sbjct: 64 TRPSKL 69
>pdb|2COY|A Chain A, Solution Structure Of The Cap-Gly Domain In Human Dynactin
1
Length = 112
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 40/66 (60%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
+G V + G +AY+G T FA G WVGV LD GKNDGTVQG +YF HGIF
Sbjct: 36 VGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIF 95
Query: 78 VRADKL 83
VR ++
Sbjct: 96 VRQSQI 101
>pdb|1WHH|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Mouse
Clip170-Related 59kda Protein Clipr-59
Length = 102
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
+G+ VL+ G++ + G T+FA G W G+ELD PTGK+DG+V G RYF P+HG+F
Sbjct: 28 VGDQVLVAG-QKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVRYFTCAPRHGVF 86
Query: 78 VRADKL 83
A ++
Sbjct: 87 APASRI 92
>pdb|1TXQ|A Chain A, Crystal Structure Of The Eb1 C-Terminal Domain Complexed
With The Cap-Gly Domain Of P150glued
pdb|2HQH|A Chain A, Crystal Structure Of P150glued And Clip-170
pdb|2HQH|B Chain B, Crystal Structure Of P150glued And Clip-170
pdb|2HQH|C Chain C, Crystal Structure Of P150glued And Clip-170
pdb|2HQH|D Chain D, Crystal Structure Of P150glued And Clip-170
Length = 93
Score = 68.6 bits (166), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 40/66 (60%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
+G V + G +AY+G T FA G WVGV LD GKNDGTVQG +YF HGIF
Sbjct: 15 VGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIF 74
Query: 78 VRADKL 83
VR ++
Sbjct: 75 VRQSQI 80
>pdb|3TQ7|P Chain P, Eb1cEB3C HETERODIMER IN COMPLEX WITH THE CAP-Gly Domain
Of P150glued
pdb|3TQ7|Q Chain Q, Eb1cEB3C HETERODIMER IN COMPLEX WITH THE CAP-Gly Domain
Of P150glued
Length = 71
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 40/66 (60%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
+G V + G +AY+G T FA G WVGV LD GKNDGTVQG +YF HGIF
Sbjct: 3 VGSRVEVIGKGHRGTVAYVGMTLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIF 62
Query: 78 VRADKL 83
VR ++
Sbjct: 63 VRQSQI 68
>pdb|2HKN|A Chain A, Crystal Structure Of The Cap-Gly Domain Of Human
Dynactin-1 (P150- Glued)
pdb|2HKN|B Chain B, Crystal Structure Of The Cap-Gly Domain Of Human
Dynactin-1 (P150- Glued)
pdb|2HKQ|B Chain B, Crystal Structure Of The C-Terminal Domain Of Human Eb1
In Complex With The Cap-Gly Domain Of Human Dynactin-1
(P150-Glued)
pdb|3E2U|A Chain A, Crystal Structure Of The Zink-Knuckle 2 Domain Of Human
Clip-170 In Complex With Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
pdb|3E2U|B Chain B, Crystal Structure Of The Zink-Knuckle 2 Domain Of Human
Clip-170 In Complex With Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
pdb|3E2U|C Chain C, Crystal Structure Of The Zink-Knuckle 2 Domain Of Human
Clip-170 In Complex With Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
pdb|3E2U|D Chain D, Crystal Structure Of The Zink-Knuckle 2 Domain Of Human
Clip-170 In Complex With Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
Length = 97
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 40/66 (60%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
+G V + G +AY+G T FA G WVGV LD GKNDGTVQG +YF HGIF
Sbjct: 15 VGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIF 74
Query: 78 VRADKL 83
VR ++
Sbjct: 75 VRQSQI 80
>pdb|1TOV|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Cap-Gly
Domain Of F53f4.3
Length = 98
Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 36/49 (73%)
Query: 31 GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVR 79
G +AY+G T+F G WVGV+ D P GKNDG+V G RYF+ PK+G FVR
Sbjct: 33 GEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRYFDCDPKYGGFVR 81
>pdb|1LPL|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Cap-Gly
Domain Of F53f4.3
Length = 95
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 36/49 (73%)
Query: 31 GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVR 79
G +AY+G T+F G WVGV+ D P GKNDG+V G RYF+ PK+G FVR
Sbjct: 30 GEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRYFDCDPKYGGFVR 78
>pdb|2QK0|A Chain A, Structural Basis Of Microtubule Plus End Tracking By
Xmap215, Clip-170 And Eb1
Length = 74
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
+GE V + N G I ++G T+FA G W G+ LD P GKNDG+V G RYF+ P GIF
Sbjct: 6 VGERVWVNG-NKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIF 64
Query: 78 VRADK 82
R K
Sbjct: 65 TRPSK 69
>pdb|1WHK|A Chain A, Solution Structure Of The 3rd Cap-Gly Domain In Mouse
1700024k14rik Hypothetical Protein
Length = 91
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 41/65 (63%)
Query: 19 GESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFV 78
G VL+ N + Y+GPT+FA+G W+G+EL + GKNDG V RYF +P +G+ V
Sbjct: 16 GSQVLLTSSNEMATVRYVGPTDFASGIWLGLELRSAKGKNDGAVGDKRYFTCKPNYGVLV 75
Query: 79 RADKL 83
R ++
Sbjct: 76 RPSRV 80
>pdb|2HL3|A Chain A, Crystal Structure Of The A49m Mutant Cap-Gly Domain Of
Human Dynactin-1 (P150-Glued) In Complex With Human Eb1
C- Terminal Hexapeptide
pdb|2HL3|B Chain B, Crystal Structure Of The A49m Mutant Cap-Gly Domain Of
Human Dynactin-1 (P150-Glued) In Complex With Human Eb1
C- Terminal Hexapeptide
pdb|2HL5|C Chain C, Crystal Structure Of The C-Terminal Domain Of Human Eb1
In Complex With The A49m Mutant Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
pdb|2HL5|D Chain D, Crystal Structure Of The C-Terminal Domain Of Human Eb1
In Complex With The A49m Mutant Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
Length = 97
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 40/66 (60%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
+G V + G +AY+G T FA G WVGV LD GKNDGTVQG +YF HGIF
Sbjct: 15 VGSRVEVIGKGHRGTVAYVGMTLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIF 74
Query: 78 VRADKL 83
VR ++
Sbjct: 75 VRQSQI 80
>pdb|2CP2|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human
Clip- 115CYLN2
Length = 95
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 36/59 (61%)
Query: 31 GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRRG 89
GV+ Y+G T+FA G W GV LD P GKNDG V G RYFE GIF R KL + G
Sbjct: 33 GVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYFECPALQGIFTRPSKLTRQPSG 91
>pdb|1WHG|A Chain A, Solution Structure Of The Cap-Gly Domain In Mouse
Tubulin Specific Chaperone B
Length = 113
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 34/49 (69%)
Query: 31 GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVR 79
G + Y+G T+F G WVGV D P GKNDG+V G RYFE + K+G FV+
Sbjct: 51 GTVMYVGLTDFKPGYWVGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVK 99
>pdb|1WHJ|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Mouse
1700024k14rik Hypothetical Protein
Length = 102
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
LG+ V+I G + + G TEFA+G W G+ELD P GKN+G+V +YF+ PK+GIF
Sbjct: 27 LGDRVVIAG-QKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGRVQYFKCAPKYGIF 85
Query: 78 VRADKL 83
K+
Sbjct: 86 APLSKI 91
>pdb|4B6M|A Chain A, Trypansoma Brucei Tubulin Binding Cofactor B Cap-Gly
Domain
pdb|4B6M|B Chain B, Trypansoma Brucei Tubulin Binding Cofactor B Cap-Gly
Domain
Length = 84
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 14 EWVCLGESVLIRPYNSSGVIAYIG-PTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRP 72
E + +G+ L RP + G + ++G G WVGVE D P GK DGTV+GTR F+ +P
Sbjct: 4 ETIHVGDRCLCRPGDRLGSVRFVGRVASLKPGYWVGVEFDEPVGKGDGTVKGTRVFQCQP 63
Query: 73 KHGIFVRADKL 83
+G F+R D++
Sbjct: 64 NYGGFLRPDQV 74
>pdb|2COZ|A Chain A, Solution Structure Of The Cap-Gly Domain In Human
Centrosome-Associated Protein Cap350
Length = 122
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
+G+ VLI G++ + G T FA G W GVELD P G N+GT G YFE + KHGIF
Sbjct: 34 IGDRVLIGNVQP-GILRFKGETSFAKGFWAGVELDKPEGNNNGTYDGIAYFECKEKHGIF 92
Query: 78 VRADKL 83
K+
Sbjct: 93 APPQKI 98
>pdb|2Z0W|A Chain A, Crystal Structure Of The 2nd Cap-Gly Domain In Human
Restin- Like Protein 2 Reveals A Swapped-Dimer
Length = 96
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
LGE VL+ G I + G T FA G W G+EL+ P GKNDG+V G +YF P++GIF
Sbjct: 13 LGERVLVVG-QRLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIF 71
Query: 78 VRADKL 83
++
Sbjct: 72 APPSRV 77
>pdb|1IXD|A Chain A, Solution Structure Of The Cap-Gly Domain From Human
Cylindromatosis Tomour-Suppressor Cyld
Length = 104
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 31 GVIAYIGPTEFAAGTWVGVEL-DAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRRG 89
GVI +IG G+EL D G DGT +GTRYF K +FV+ D R
Sbjct: 34 GVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCALKKALFVKLKSCRPDSRF 93
Query: 90 RAMRSGG 96
+++ G
Sbjct: 94 ASLQPSG 100
>pdb|1WHL|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human
Cylindromatosis Tumor Suppressor Cyld
Length = 95
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 31 GVIAYIGPT---EFAAGTWVGVELDAP---TGKNDGTVQGTRYFESRPKHGIFVRADKL 83
GV+ + GP +G + GVEL G DG QG + F+ G+FV DKL
Sbjct: 27 GVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQLFQCDEDCGVFVALDKL 85
>pdb|2YHA|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi
Domains
Length = 388
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 9 DVTLPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYF 68
DVT P + G+S P ++ ++ + + G W + + P G+ T Q T F
Sbjct: 163 DVTHPTNLAAGQS----PASAPSIVGLVSTIDQHLGQWPAMVWNNPHGQESMTEQFTDKF 218
Query: 69 ESR 71
++R
Sbjct: 219 KTR 221
>pdb|2YHB|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi
Domains
Length = 437
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 9 DVTLPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYF 68
DVT P + G+S P ++ ++ + + G W + + P G+ T Q T F
Sbjct: 163 DVTHPTNLAAGQS----PASAPSIVGLVSTIDQHLGQWPAMVWNNPHGQESMTEQFTDKF 218
Query: 69 ESR 71
++R
Sbjct: 219 KTR 221
>pdb|1WHM|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Human
Cylindromatosis Tumor Suppressor Cyld
Length = 92
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 38 PTEFAAGTWVGVELDAPTGKNDGTVQGTRYFE-SRPKHGIFVRADKLIQDRRGRA 91
P + + G +VGV++D P G DG G + + + I + + +I + G +
Sbjct: 36 PGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSFACVESTILLHINDIIPESSGPS 90
>pdb|1HFX|A Chain A, Alpha-Lactalbumin
Length = 123
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 7/12 (58%), Positives = 11/12 (91%)
Query: 7 FDDVTLPEWVCL 18
+ D+TLPEW+C+
Sbjct: 18 YRDITLPEWLCI 29
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,484,550
Number of Sequences: 62578
Number of extensions: 139900
Number of successful extensions: 435
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 402
Number of HSP's gapped (non-prelim): 37
length of query: 106
length of database: 14,973,337
effective HSP length: 71
effective length of query: 35
effective length of database: 10,530,299
effective search space: 368560465
effective search space used: 368560465
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)